Query 014979
Match_columns 415
No_of_seqs 230 out of 365
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 01:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 2E-127 4E-132 949.3 28.0 353 1-415 1-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 3.3E-84 7.2E-89 623.2 16.4 245 120-409 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 2.4E-19 5.2E-24 185.0 4.1 77 321-409 485-561 (565)
4 PF12937 F-box-like: F-box-lik 97.8 7.1E-06 1.5E-10 59.7 0.7 36 56-99 1-36 (47)
5 PF00646 F-box: F-box domain; 97.5 1.4E-05 3.1E-10 57.7 -0.6 39 55-101 2-40 (48)
6 PLN03215 ascorbic acid mannose 97.3 0.0001 2.2E-09 76.2 1.8 41 54-101 2-42 (373)
7 smart00256 FBOX A Receptor for 97.2 7.6E-05 1.7E-09 51.4 -0.3 34 59-100 1-34 (41)
8 PF12043 DUF3527: Domain of un 96.7 0.0023 4.9E-08 65.7 5.0 58 345-410 287-344 (346)
9 KOG2997 F-box protein FBX9 [Ge 88.0 0.26 5.6E-06 50.7 1.6 43 53-98 101-146 (366)
10 KOG2120 SCF ubiquitin ligase, 62.0 2.2 4.7E-05 44.2 -0.5 67 56-130 98-167 (419)
11 PF11038 DGF-1_5: Dispersed ge 51.8 34 0.00073 33.5 5.6 105 76-209 15-126 (278)
12 PF04525 Tub_2: Tubby C 2; In 35.0 1.2E+02 0.0026 28.0 6.4 78 125-205 62-144 (187)
13 PF12043 DUF3527: Domain of un 33.4 1.8E+02 0.0038 30.6 7.9 72 125-205 7-108 (346)
14 KOG2477 Uncharacterized conser 24.8 35 0.00076 37.5 1.2 28 237-268 481-509 (628)
15 KOG0274 Cdc4 and related F-box 20.1 23 0.0005 38.7 -1.3 46 49-102 101-146 (537)
16 KOG4341 F-box protein containi 20.1 43 0.00093 36.2 0.7 58 52-118 68-125 (483)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1.9e-127 Score=949.30 Aligned_cols=353 Identities=51% Similarity=0.823 Sum_probs=304.4
Q ss_pred CchhhhhhhhhhcccCcccccccccccccccccCcccccCCccccccCCcccCCccCCCCHHHHHHHHHHhhhcCCCCCc
Q 014979 1 MSFKSIVRELKEMRDGIGSKSRRGVEAGKHWHSRKQTHIAPDQALLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPA 80 (415)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ell~~~~~r~e~se~~wp~ 80 (415)
|++++++++ +++.. +++......+++. +...++.. .+.....+.|++||||||+|+|+|+||+|+.||+
T Consensus 1 ~~~~~~~~~---~~~~~------~~~~~~~~~~~~~-~~~~~~~~-~~s~~~~~~~~~l~~~~L~d~~~r~eese~~wp~ 69 (355)
T KOG2502|consen 1 MGEDGPVRD---PEDKS------SFRAPQGSGTKGP-EDKSEDSG-FPSPSDQSLWAALPPELLSDVLKRDEESEDTWPS 69 (355)
T ss_pred CCccCccCC---CCccc------chhcccccccccC-CCccCCcC-CccccccchhhcCCHhHHHHHhhhcccccccccc
Confidence 789999998 66655 4444333222222 11122110 1111122899999999999999999999999999
Q ss_pred cceeeeecccchhHHHHHHHhhcCccccccccccccccCCCCCCCcEEEEEEEecCCceEEEEeccCCCCC--CCCcEEE
Q 014979 81 RAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLKQPGPHESPIQCFIRRDRGTSTYHLCFGLVPSED--GSDKLLL 158 (415)
Q Consensus 81 r~~vv~ca~vc~~wr~~~~eiv~~pe~~gk~tFpisLkqPgPrd~~iQCfIkR~k~~~tY~LYL~l~~~~~--e~~KfLL 158 (415)
|++||+||+||+.||++++|||++||.+|++|||++|+||||+|.++||+|+|||+|++|+||+++.+++. |++||||
T Consensus 70 r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~Rdks~~~~~Ly~~l~~~l~~~d~~kfLL 149 (355)
T KOG2502|consen 70 RRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKRDKSGMDRGLYLSLYLHLEREDNKKFLL 149 (355)
T ss_pred ccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEEccCCCceeeeecccccccccccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998843 7799999
Q ss_pred EEeeeccCCceeEEEEccCCccccCccceeeeeeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCccee
Q 014979 159 AARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYR 238 (415)
Q Consensus 159 aArK~rr~ttS~YiISld~~dlSr~S~~yVGKLRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~e 238 (415)
||||+||+||+|||||+|++||||++++||||||||||||||||||+|. +.+|+++ ++|+++|+
T Consensus 150 aark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~----------~~~r~~~------~~~~~~~~ 213 (355)
T KOG2502|consen 150 AARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGV----------NPSRRFN------KVPSGRQE 213 (355)
T ss_pred eeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCC----------Ccccccc------cCCcccce
Confidence 9999999999999999999999999999999999999999999999972 2234444 58999999
Q ss_pred EEEEEEeecccCCCCCceeEEeecCCCcccccCCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCC
Q 014979 239 IGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPG 318 (415)
Q Consensus 239 la~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~ 318 (415)
||+|+||+||||+||||||+|+||+||.++ ++|++|.|++..+. ..+. +. .+..
T Consensus 214 la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~-----~~l~--r~-----------------~~k~ 267 (355)
T KOG2502|consen 214 LAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHP-----SLLF--RS-----------------QNKD 267 (355)
T ss_pred eeEEEEeeccccccCCceeEEeccCCCCCC--CCCccccccccccc-----chhh--hc-----------------cccC
Confidence 999999999999999999999999999987 89999988653211 0110 10 1223
Q ss_pred CCCceEeecCCCccccccccEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHH
Q 014979 319 SPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAF 398 (415)
Q Consensus 319 ~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~aSVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~ 398 (415)
++++++|+||.|+|||++||||||||||||+||||||||||. .++++|||||||||||+|||||+||||||
T Consensus 268 ~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~---------~~p~~iiLQFGrV~kD~FTmDYrYPlSa~ 338 (355)
T KOG2502|consen 268 KEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHA---------LDPEYIILQFGRVGKDVFTMDYRYPLSAF 338 (355)
T ss_pred cccceEeecCCCccccccceEEEecCCeEEEeeecceEEecc---------CCCCEEEEEeeeeccceeeecccCccHHH
Confidence 689999999999999999999999999999999999999998 56799999999999999999999999999
Q ss_pred HHHHHHHHcCCCcccCC
Q 014979 399 QAFAICLSSFDTKPACE 415 (415)
Q Consensus 399 QAFaI~LssfdtKlACE 415 (415)
|||||||||||+|||||
T Consensus 339 QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 339 QAFAICLSSFDTKLACE 355 (355)
T ss_pred HHHHHHHHhccccccCC
Confidence 99999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=3.3e-84 Score=623.23 Aligned_cols=245 Identities=51% Similarity=0.848 Sum_probs=182.0
Q ss_pred CCCCCCcEEEEEEEecCCceEEEEeccCCC-CCCCCcEEEEEeeeccCCceeEEEEccCCccccCccceeeeeeeceeec
Q 014979 120 PGPHESPIQCFIRRDRGTSTYHLCFGLVPS-EDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGT 198 (415)
Q Consensus 120 PgPrd~~iQCfIkR~k~~~tY~LYL~l~~~-~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~~yVGKLRSNFlGT 198 (415)
|||+|++|||+|+|||+|++|+||+.+... +.+++||||||||++++++||||||++++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 899999999999999998754443333222 3478899999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCcceeEEEEEEeecccCCCCCceeEEeecCCCcccccCCCCCCCC
Q 014979 199 KFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTP 278 (415)
Q Consensus 199 kFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~~gg~~p~q 278 (415)
+|+|||+|++++.+.. .+|..+..++|||+|.||+||||+||||||+|+||+|+.+..++++..|.+
T Consensus 81 ~F~iyD~g~~~~~~~~-------------~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSKS-------------ISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCSTC-------------CTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCccccc-------------cCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 9999999976654421 256677889999999999999999999999999999988777766665543
Q ss_pred ccccccCCccccccccCCCCCccccCCCCCCCccCCCCCCCCCceEeecCCCccccccccEEeccCCcccccccceeEEE
Q 014979 279 TSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLV 358 (415)
Q Consensus 279 ~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~aSVKNFQLv 358 (415)
..- .+....+ .+ ......++.++|+||.|+||++++||||||+||||+|||||||||
T Consensus 148 p~~----~~~~~~~---------~~----------~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~ 204 (246)
T PF01167_consen 148 PLN----QEKDSLL---------SR----------FQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLV 204 (246)
T ss_dssp -SS-----CCCSHH---------HH----------HHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEE
T ss_pred ccc----ccccccc---------cc----------ccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEE
Confidence 110 0000000 00 012245789999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCC
Q 014979 359 AAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFD 409 (415)
Q Consensus 359 ~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd 409 (415)
++ ++++++|||||||++|+|+|||+|||||+|||||||||||
T Consensus 205 ~~---------~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 205 HP---------SDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp BT---------TBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred cc---------CCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 98 7889999999999999999999999999999999999997
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.76 E-value=2.4e-19 Score=185.00 Aligned_cols=77 Identities=43% Similarity=0.737 Sum_probs=71.6
Q ss_pred CceEeecCCCccccccccEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHH
Q 014979 321 QPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQA 400 (415)
Q Consensus 321 ~~~~L~nK~P~w~e~~q~~~LnF~GRVt~aSVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QA 400 (415)
++.++.||+|-|||+.|-|+|||.||||+.|.||||+-.. .+-|||||+|+.+.|++||+||+|+.||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa 552 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA 552 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence 3469999999999999999999999999999999999865 4669999999999999999999999999
Q ss_pred HHHHHHcCC
Q 014979 401 FAICLSSFD 409 (415)
Q Consensus 401 FaI~Lssfd 409 (415)
||+||++.-
T Consensus 553 Favalanvt 561 (565)
T KOG2503|consen 553 FAVALANVT 561 (565)
T ss_pred HHHHHhhhh
Confidence 999999864
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.78 E-value=7.1e-06 Score=59.66 Aligned_cols=36 Identities=31% Similarity=0.666 Sum_probs=30.3
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHH
Q 014979 56 WANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTK 99 (415)
Q Consensus 56 w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ 99 (415)
|..||+|+|.+|+..++. +++..|+.|||.|++++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999998843 268999999999999983
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.54 E-value=1.4e-05 Score=57.66 Aligned_cols=39 Identities=21% Similarity=0.481 Sum_probs=31.7
Q ss_pred ccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHHh
Q 014979 55 LWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEI 101 (415)
Q Consensus 55 ~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ei 101 (415)
.|.+||+|++.+|+.+++-.+ +++|+.||+.|+.++++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~--------~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKD--------LLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHH--------HHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHH--------HHHHHHHhhHHHHHHcCC
Confidence 488999999999999996543 999999999999998764
No 6
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.30 E-value=0.0001 Score=76.21 Aligned_cols=41 Identities=32% Similarity=0.611 Sum_probs=37.7
Q ss_pred CccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHHh
Q 014979 54 SLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEI 101 (415)
Q Consensus 54 ~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ei 101 (415)
..|+.||+|||+.|..|| |++-|++.-++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 369999999999999999 99999999999999999987653
No 7
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.18 E-value=7.6e-05 Score=51.45 Aligned_cols=34 Identities=29% Similarity=0.621 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH
Q 014979 59 LPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE 100 (415)
Q Consensus 59 ~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e 100 (415)
||+|++.+|+.++ +. +++.+|+.||+.||.++++
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 54 7889999999999998853
No 8
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=96.66 E-value=0.0023 Score=65.67 Aligned_cols=58 Identities=21% Similarity=0.499 Sum_probs=46.7
Q ss_pred CcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCCC
Q 014979 345 GRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDT 410 (415)
Q Consensus 345 GRVt~aSVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfdt 410 (415)
.+.+.+.-+=|.|.... ..++..+|-+--+.++.|.+||+-.||++|||+||++-.++
T Consensus 287 ~~~~~~~~~~feLf~QG--------~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~ 344 (346)
T PF12043_consen 287 SSSSKESSHPFELFVQG--------SKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHS 344 (346)
T ss_pred cccccccCCceeeeecc--------cccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeec
Confidence 45556677778987541 23334899999999999999999999999999999987654
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=88.02 E-value=0.26 Score=50.66 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCccCC---CCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHH
Q 014979 53 HSLWAN---LPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVT 98 (415)
Q Consensus 53 ~~~w~~---~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~ 98 (415)
|++|-+ ||+|+|..|+++|=.+- =.-++.+.||+||+.|+-.|
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHH
Confidence 678866 99999999999995322 12355789999999877655
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=61.97 E-value=2.2 Score=44.24 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=50.5
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH--hhcCccccccccccccccCCCCCCC-cEEEE
Q 014979 56 WANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE--IVQTPEQCGRLTFPISLKQPGPHES-PIQCF 130 (415)
Q Consensus 56 w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e--iv~~pe~~gk~tFpisLkqPgPrd~-~iQCf 130 (415)
|.+||.|+|.+|..-+ ..++...-++||++|-.++.+ .-.+.+.-||---|++|-|=..|+. .++|-
T Consensus 98 ~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred cccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 9999999999999755 567788999999999988754 3345666777666777766666663 45553
No 11
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=51.78 E-value=34 Score=33.50 Aligned_cols=105 Identities=27% Similarity=0.398 Sum_probs=62.5
Q ss_pred CCCCccceeeeecccchhHHHHHHHhhcCccccccccc-cccccCCC----CCCCcE-EEEEEEecCCceEEEEeccCCC
Q 014979 76 TSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTF-PISLKQPG----PHESPI-QCFIRRDRGTSTYHLCFGLVPS 149 (415)
Q Consensus 76 ~~wp~r~~vv~ca~vc~~wr~~~~eiv~~pe~~gk~tF-pisLkqPg----Prd~~i-QCfIkR~k~~~tY~LYL~l~~~ 149 (415)
..-|. +-.|+|+..|| |. +.|+..--++| |.|+.||- |++.++ .-.-.||+.+.
T Consensus 15 ~~~p~-~~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp----------- 74 (278)
T PF11038_consen 15 GAVPK-KLTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNP----------- 74 (278)
T ss_pred ccCCc-ceEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCC-----------
Confidence 33344 34799999999 75 57888888999 78999994 555432 23445555443
Q ss_pred CCCCCcEEEEEeeeccCCceeEEEEccCCccccCcc-ceeeeeeeceeecEEEEecCCCCC
Q 014979 150 EDGSDKLLLAARKIRRATCTDFVISLAANDFSRASN-SYVGKLRSNFLGTKFTIYDSQPPC 209 (415)
Q Consensus 150 ~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~-~yVGKLRSNFlGTkFtIYD~gpp~ 209 (415)
.+.+=|++-+-+ .|.|-+|.+.+-|-+. .-.|--+--++| .|||-.+-||.
T Consensus 75 ---~~vlelavp~~~-----~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~~ 126 (278)
T PF11038_consen 75 ---STVLELAVPVHR-----GYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPPA 126 (278)
T ss_pred ---ceeEEEEEeccC-----ceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcHH
Confidence 233334444433 3777777775544221 222333333444 58998877653
No 12
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=34.97 E-value=1.2e+02 Score=28.02 Aligned_cols=78 Identities=23% Similarity=0.249 Sum_probs=31.9
Q ss_pred CcEEEEEEEecCCc--eEEEEeccCCCCCCCCcEEEEEeeec-cCCceeEEEEccCC-cc-ccCccceeeeeeeceeecE
Q 014979 125 SPIQCFIRRDRGTS--TYHLCFGLVPSEDGSDKLLLAARKIR-RATCTDFVISLAAN-DF-SRASNSYVGKLRSNFLGTK 199 (415)
Q Consensus 125 ~~iQCfIkR~k~~~--tY~LYL~l~~~~~e~~KfLLaArK~r-r~ttS~YiISld~~-dl-Sr~S~~yVGKLRSNFlGTk 199 (415)
|..-..|+|..-+. +|..|.+-. .+..+.+...||.- -...++..+.+.+. .. .-.+...-=+++.||++-.
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 55667888754333 999998532 23345777777761 12223333333322 11 0112223346799999999
Q ss_pred EEEecC
Q 014979 200 FTIYDS 205 (415)
Q Consensus 200 FtIYD~ 205 (415)
|+|||.
T Consensus 139 ~~I~~~ 144 (187)
T PF04525_consen 139 FTIYDS 144 (187)
T ss_dssp -EEEEC
T ss_pred EEEEEc
Confidence 999974
No 13
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=33.44 E-value=1.8e+02 Score=30.62 Aligned_cols=72 Identities=15% Similarity=0.344 Sum_probs=40.2
Q ss_pred CcEEEEEEEecCCceEEEEeccCCCCCCCCcEEEEEeeeccC----Ccee--EEEEc-cC------Cccc-----cCccc
Q 014979 125 SPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRA----TCTD--FVISL-AA------NDFS-----RASNS 186 (415)
Q Consensus 125 ~~iQCfIkR~k~~~tY~LYL~l~~~~~e~~KfLLaArK~rr~----ttS~--YiISl-d~------~dlS-----r~S~~ 186 (415)
+.+||.+| .+...|.+-+ ++.+=.|||+-++-. ...+ |.+-. +. .-++ +...+
T Consensus 7 alLq~t~K--NG~P~F~Fsv-------d~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~~~~ 77 (346)
T PF12043_consen 7 ALLQCTWK--NGLPLFEFSV-------DNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKSSSN 77 (346)
T ss_pred EEEEEEEe--CCeEEEEEEe-------CCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccCCcc
Confidence 67888877 2333555554 344457778766544 2333 43322 21 1111 22346
Q ss_pred eeeeee-----------ece-eecEEEEecC
Q 014979 187 YVGKLR-----------SNF-LGTKFTIYDS 205 (415)
Q Consensus 187 yVGKLR-----------SNF-lGTkFtIYD~ 205 (415)
-||+++ .+. +-|+|++||.
T Consensus 78 iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 78 IVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred eEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 899987 222 7789999995
No 14
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.77 E-value=35 Score=37.52 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=22.4
Q ss_pred eeEEEEEEeecccCCCCC-ceeEEeecCCCccc
Q 014979 237 YRIGSISYELNVLRTRGP-RRMNCIMDTIPFSS 268 (415)
Q Consensus 237 ~ela~V~Ye~NVLg~rGP-RrM~~im~~IP~s~ 268 (415)
.++.+|.||.- .++ |+|+|.|+|||+..
T Consensus 481 ~n~dviFyE~a----~~l~rrpH~~IeCIPvpq 509 (628)
T KOG2477|consen 481 MNLDVIFYENA----PSLQRRPHTAIECIPVPQ 509 (628)
T ss_pred cCCCeEEEecc----CccccCCceeEEEeechH
Confidence 46789999973 455 89999999999743
No 15
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=20.13 E-value=23 Score=38.75 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=36.7
Q ss_pred CcccCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHHhh
Q 014979 49 DSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIV 102 (415)
Q Consensus 49 ~~~~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~eiv 102 (415)
...+..-=..||.||..-|+.-+ +. ++..+|++||+.|+.++..=.
T Consensus 101 ~~~~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 101 PLGQRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred cccccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhccc
Confidence 34566667889999998898888 55 669999999999998875443
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=20.12 E-value=43 Score=36.21 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=38.5
Q ss_pred cCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHHhhcCcccccccccccccc
Q 014979 52 QHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRLTFPISLK 118 (415)
Q Consensus 52 ~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~eiv~~pe~~gk~tFpisLk 118 (415)
+.+-=-.|||||+.-|..-|+- +...-||.+|+.|-..+.+.+-= .--.-.|||..+.
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDt--------ksl~r~a~~c~~~n~~AlD~~~~-q~idL~t~~rDv~ 125 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDT--------KSLCRAAQCCTMWNKLALDGSCW-QHIDLFTFQRDVD 125 (483)
T ss_pred cccccccCCHHHHHHHHHHHhH--------HHHHHHHHHHHHhhhhhhccccc-eeeehhcchhcCC
Confidence 3333346999999999998842 45567999999999888776421 1112346655443
Done!