Query 014979
Match_columns 415
No_of_seqs 230 out of 365
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 04:31:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 2.3E-89 7.8E-94 667.3 21.9 242 117-415 29-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 1.3E-86 4.4E-91 638.9 22.0 236 117-409 5-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.1 7E-07 2.4E-11 65.2 1.3 40 52-99 5-44 (53)
4 2ast_B S-phase kinase-associat 96.9 0.00022 7.7E-09 66.9 1.5 41 51-99 4-44 (336)
5 2e31_A FBS1, F-box only protei 96.8 0.00036 1.2E-08 68.6 1.7 39 53-99 48-87 (297)
6 2p1m_B Transport inhibitor res 96.6 0.00044 1.5E-08 69.7 0.8 42 52-100 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 94.9 0.0075 2.6E-07 58.1 1.6 41 51-99 14-54 (445)
8 3v7d_B Cell division control p 94.8 0.004 1.4E-07 60.0 -0.7 43 50-100 9-51 (464)
9 3l2o_B F-box only protein 4; s 92.7 0.015 5.2E-07 57.6 -0.9 38 55-100 4-41 (312)
10 3ogk_B Coronatine-insensitive 92.0 0.033 1.1E-06 56.2 0.4 37 56-99 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 91.9 0.021 7.2E-07 55.1 -1.1 42 51-100 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 27.0 1.4E+02 0.0049 26.8 7.0 11 237-247 166-176 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=2.3e-89 Score=667.32 Aligned_cols=242 Identities=38% Similarity=0.693 Sum_probs=184.6
Q ss_pred ccCCCCCCCcEEEEEEEecCCc------eEEEEeccCCCCCCCCcEEEEEeeeccCCceeEEEEccCCccccCccceeee
Q 014979 117 LKQPGPHESPIQCFIRRDRGTS------TYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGK 190 (415)
Q Consensus 117 LkqPgPrd~~iQCfIkR~k~~~------tY~LYL~l~~~~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~~yVGK 190 (415)
|+||+|+|+++||+|+|||+|+ +|||||+ .++++|||||||+|+++++||+||+|++||||++++||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK 103 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 103 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence 9999999999999999999984 9999994 4678999999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCcceeEEEEEEeecccCCCCCceeEEeecCCCccccc
Q 014979 191 LRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIE 270 (415)
Q Consensus 191 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~ 270 (415)
|||||+||+|+|||+|++++. ..+|.++.+++|||+|+||+||||++|||+|+|+||.+ . +
T Consensus 104 LrSNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~---~-~ 164 (276)
T 2fim_A 104 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 164 (276)
T ss_dssp EEECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 999999999999999955431 13566778899999999999999999999999998753 1 2
Q ss_pred CCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCCCCCceEeecCCCccccccccEEeccCCccccc
Q 014979 271 EGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVA 350 (415)
Q Consensus 271 ~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~a 350 (415)
.|+..|.+. ...++++ + .++ .+...+++++|+||+|+|||++|||||||+||||+|
T Consensus 165 ~~~~~~~~p---~~~~~~l--l---------~~~----------~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~a 220 (276)
T 2fim_A 165 ENERVPIRP---RNASDGL--L---------VRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 220 (276)
T ss_dssp TSCBCCCCC---SSTTCSH--H---------HHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSC
T ss_pred CCCEecccC---CCccccc--c---------hhh----------hccCCcceEeeeccCCcccccCCEEEEecCCeeecc
Confidence 333333221 0011111 0 000 012457889999999999999999999999999999
Q ss_pred ccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCCCcccCC
Q 014979 351 SVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 415 (415)
Q Consensus 351 SVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE 415 (415)
||||||||++ +++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 221 SvKNFQLv~~---------~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 221 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CTTCEEEECT---------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred ccceEEEEec---------CCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 9999999998 6778999999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=1.3e-86 Score=638.87 Aligned_cols=236 Identities=37% Similarity=0.686 Sum_probs=190.1
Q ss_pred ccCCCCCCCcEEEEEEEecCCc------eEEEEeccCCCCCCCCcEEEEEeeeccCCceeEEEEccCCccccCccceeee
Q 014979 117 LKQPGPHESPIQCFIRRDRGTS------TYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGK 190 (415)
Q Consensus 117 LkqPgPrd~~iQCfIkR~k~~~------tY~LYL~l~~~~~e~~KfLLaArK~rr~ttS~YiISld~~dlSr~S~~yVGK 190 (415)
|+||||+|++|||+|+|||+|+ +||||++ .++++|||||||+|++++||||||+|++||||++++||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 9999999999999999999984 8999984 4567899999999999999999999999999999999999
Q ss_pred eeeceeecEEEEecCCCCCCCCCCCCCCCCccccccccCCCCCCcceeEEEEEEeecccCCCCCceeEEeecCCCccccc
Q 014979 191 LRSNFLGTKFTIYDSQPPCDMTIQPTGGMSRRFHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMDTIPFSSIE 270 (415)
Q Consensus 191 LRSNFlGTkFtIYD~gpp~~~a~~~~~r~sr~~~sk~vsP~vp~~~~ela~V~Ye~NVLg~rGPRrM~~im~~IP~s~i~ 270 (415)
|||||+||+|+|||+|++++. ..+|.++.+++|||+|.||+||||++|||+|+|+||.+ . +
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~---------------~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~---~-~ 140 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGM---S-A 140 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGG---------------CTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECB---C-T
T ss_pred EEEccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCc---c-c
Confidence 999999999999999965432 13566778899999999999999999999999998753 1 2
Q ss_pred CCCCCCCCccccccCCccccccccCCCCCccccCCCCCCCccCCCCCCCCCceEeecCCCccccccccEEeccCCccccc
Q 014979 271 EGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYSSSPSPSLSLASTPGSPQPLALKNKAPRWHEQLQCWCLNFRGRVTVA 350 (415)
Q Consensus 271 ~gg~~p~q~~~~~~~~e~f~~~~~~k~~~~~~~~~s~~~~~~~~~~~~~~~~~~L~nK~P~w~e~~q~~~LnF~GRVt~a 350 (415)
.|+..|.+. ...++++ + .++ .+...+++++|+||+|+|||++|||||||+||||+|
T Consensus 141 ~~~~~~~~p---~~~~~~~--~---------~~~----------~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~a 196 (246)
T 3c5n_A 141 ENERVPIRP---RNASDGL--L---------VRW----------QNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQA 196 (246)
T ss_dssp TSCBCCCCC---SSTTSSH--H---------HHH----------HHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBC
T ss_pred CCCEeeccC---CCccccc--h---------hhh----------hccCCcceEEEeccCCcccccCCEEEEecCCeeecc
Confidence 343333221 1111111 0 000 012457889999999999999999999999999999
Q ss_pred ccceeEEEeccCCCCCCCCCCCCeEEEEeeeccCCeeEEEccCCCCHHHHHHHHHHcCC
Q 014979 351 SVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFD 409 (415)
Q Consensus 351 SVKNFQLv~~~~~s~~~~~~~~~~iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd 409 (415)
||||||||++ +|+++||||||||++|+|||||+|||||||||||||||||
T Consensus 197 SvKNFqLv~~---------~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 197 SVKNFQIVHA---------DDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp CTTCEEEEBT---------TBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred ccceEEEEec---------CCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 9999999998 6788999999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.09 E-value=7e-07 Score=65.17 Aligned_cols=40 Identities=28% Similarity=0.566 Sum_probs=32.8
Q ss_pred cCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHH
Q 014979 52 QHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTK 99 (415)
Q Consensus 52 ~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ 99 (415)
++..|+.||+|+|..|+.++ | .++++.|+.||+.|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 45679999999999999999 4 4678999999999999874
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.92 E-value=0.00022 Score=66.88 Aligned_cols=41 Identities=27% Similarity=0.528 Sum_probs=34.0
Q ss_pred ccCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHH
Q 014979 51 SQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTK 99 (415)
Q Consensus 51 ~~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ 99 (415)
.++..|+.||+|+|..|+..+ |.+ ++++|+.||++|++++.
T Consensus 4 ~~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred cccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 346789999999999999999 443 68999999999999983
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=96.78 E-value=0.00036 Score=68.65 Aligned_cols=39 Identities=36% Similarity=0.722 Sum_probs=34.0
Q ss_pred CCccCCCCHHHHHHHHHHhhhcCCCCCccceee-eecccchhHHHHHH
Q 014979 53 HSLWANLPPELLLDIVRRVEESETSWPARAVVV-FCASVCRTWREVTK 99 (415)
Q Consensus 53 ~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv-~ca~vc~~wr~~~~ 99 (415)
....+.||+|||.+|+.|| |.+ +++ .|+.||+.||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhc
Confidence 3467899999999999999 775 577 99999999999874
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.58 E-value=0.00044 Score=69.74 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=31.0
Q ss_pred cCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH
Q 014979 52 QHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE 100 (415)
Q Consensus 52 ~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e 100 (415)
+...|+.||+|+|..|+.+| |..+++++|+.||++|+.+...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 45789999999999999999 8778999999999999998433
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=94.93 E-value=0.0075 Score=58.14 Aligned_cols=41 Identities=29% Similarity=0.479 Sum_probs=35.1
Q ss_pred ccCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHH
Q 014979 51 SQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTK 99 (415)
Q Consensus 51 ~~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ 99 (415)
.+..-++.||+|||..|+..|+ -+++..||.||+.|++++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~--------~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLE--------PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSC--------HHHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCC--------HHHHHHHHHHhHHHHhhcC
Confidence 4566799999999999999993 3568999999999998874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.80 E-value=0.004 Score=59.98 Aligned_cols=43 Identities=19% Similarity=0.394 Sum_probs=36.4
Q ss_pred cccCCccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH
Q 014979 50 SSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE 100 (415)
Q Consensus 50 ~~~~~~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e 100 (415)
..+..-++.||+|+|..|+..| |. ++++.|+.||+.|++++.+
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 3556678999999999999999 44 4688999999999998764
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=92.74 E-value=0.015 Score=57.64 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=33.1
Q ss_pred ccCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH
Q 014979 55 LWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE 100 (415)
Q Consensus 55 ~w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e 100 (415)
-|..||.|++..|+.-|+ + +++..||.||+.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~-------p-~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLS-------P-HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSC-------H-HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCC-------H-HHHHHHHHHHHHHHHHhcc
Confidence 478999999999999993 3 4589999999999999865
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=91.97 E-value=0.033 Score=56.18 Aligned_cols=37 Identities=11% Similarity=0.257 Sum_probs=32.6
Q ss_pred cCCCCHHHHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHH
Q 014979 56 WANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTK 99 (415)
Q Consensus 56 w~~~~~ell~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~ 99 (415)
...||+|+|..|+..| +..++.++|+.||++|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 3579999999999999 556889999999999999853
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=91.87 E-value=0.021 Score=55.07 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=34.9
Q ss_pred ccCCccCCCCHH----HHHHHHHHhhhcCCCCCccceeeeecccchhHHHHHHH
Q 014979 51 SQHSLWANLPPE----LLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKE 100 (415)
Q Consensus 51 ~~~~~w~~~~~e----ll~~~~~r~e~se~~wp~r~~vv~ca~vc~~wr~~~~e 100 (415)
.+.+-.+.||+| ||..|+..|+. +++..||.||+.|++++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 456667889999 99999999943 5688999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=27.05 E-value=1.4e+02 Score=26.76 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=6.1
Q ss_pred eeEEEEEEeec
Q 014979 237 YRIGSISYELN 247 (415)
Q Consensus 237 ~ela~V~Ye~N 247 (415)
..||.|+=+.+
T Consensus 166 ~~Va~I~kk~~ 176 (217)
T 1zxu_A 166 AIVAQMHRKHT 176 (217)
T ss_dssp CEEEEEEEC--
T ss_pred EEEEEEEeeee
Confidence 45777776644
Done!