Query 014980
Match_columns 415
No_of_seqs 346 out of 1311
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 01:56:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13178 DUF4005: Protein of u 99.7 1.9E-17 4.1E-22 141.0 5.4 67 315-384 1-78 (102)
2 KOG0160 Myosin class V heavy c 98.5 4.7E-07 1E-11 100.9 10.6 85 125-213 670-759 (862)
3 PF00612 IQ: IQ calmodulin-bin 97.8 3.3E-05 7.3E-10 47.9 3.6 21 128-148 1-21 (21)
4 COG5022 Myosin heavy chain [Cy 97.3 0.0015 3.3E-08 76.1 10.9 91 124-214 741-884 (1463)
5 smart00015 IQ Short calmodulin 97.2 0.00028 6.1E-09 45.8 2.9 21 127-147 2-22 (26)
6 KOG0160 Myosin class V heavy c 97.2 0.001 2.3E-08 74.8 9.0 78 113-193 679-758 (862)
7 KOG0520 Uncharacterized conser 96.7 0.001 2.2E-08 75.4 3.3 89 126-214 808-933 (975)
8 PTZ00014 myosin-A; Provisional 96.5 0.0047 1E-07 69.9 6.7 40 129-168 778-818 (821)
9 KOG0164 Myosin class I heavy c 96.5 0.011 2.4E-07 65.2 9.1 63 125-197 693-755 (1001)
10 PF00612 IQ: IQ calmodulin-bin 96.3 0.0055 1.2E-07 37.9 3.4 19 151-169 2-20 (21)
11 KOG2128 Ras GTPase-activating 96.0 0.016 3.4E-07 67.8 7.3 71 127-197 564-643 (1401)
12 KOG2128 Ras GTPase-activating 95.2 0.058 1.3E-06 63.3 8.4 80 132-214 539-641 (1401)
13 smart00015 IQ Short calmodulin 94.5 0.044 9.5E-07 35.4 3.0 19 151-169 4-22 (26)
14 PTZ00014 myosin-A; Provisional 94.0 0.15 3.2E-06 58.1 7.8 41 151-194 778-818 (821)
15 KOG0520 Uncharacterized conser 93.7 0.021 4.6E-07 65.0 0.5 67 125-197 788-854 (975)
16 KOG0164 Myosin class I heavy c 91.4 0.59 1.3E-05 52.3 7.6 57 151-214 697-753 (1001)
17 COG5022 Myosin heavy chain [Cy 84.7 2.5 5.5E-05 50.5 7.5 25 150-174 745-769 (1463)
18 KOG0161 Myosin class II heavy 79.9 2.8 6.1E-05 51.9 5.7 39 153-191 776-814 (1930)
19 KOG4427 E3 ubiquitin protein l 75.7 13 0.00028 42.4 8.8 23 125-147 27-49 (1096)
20 KOG0377 Protein serine/threoni 75.5 4.1 8.9E-05 43.7 4.8 33 126-158 15-47 (631)
21 KOG0161 Myosin class II heavy 72.5 16 0.00036 45.5 9.4 46 124-169 769-818 (1930)
22 KOG0942 E3 ubiquitin protein l 72.2 3.3 7.2E-05 47.5 3.3 25 124-148 25-49 (1001)
23 KOG0163 Myosin class VI heavy 65.7 20 0.00044 41.0 7.6 35 126-160 811-846 (1259)
24 KOG0162 Myosin class I heavy c 52.4 23 0.00051 40.4 5.3 21 128-148 696-716 (1106)
25 KOG0942 E3 ubiquitin protein l 48.8 29 0.00062 40.3 5.3 24 148-171 27-50 (1001)
26 PF08763 Ca_chan_IQ: Voltage g 41.3 32 0.00069 24.5 2.8 20 128-147 9-28 (35)
27 KOG4427 E3 ubiquitin protein l 39.1 75 0.0016 36.6 6.6 23 149-171 29-51 (1096)
28 PF15157 IQ-like: IQ-like 32.5 44 0.00094 28.5 2.7 21 127-147 46-66 (97)
29 KOG0163 Myosin class VI heavy 30.6 1.6E+02 0.0035 34.2 7.4 21 151-171 814-834 (1259)
30 KOG0377 Protein serine/threoni 22.9 1.7E+02 0.0036 32.0 5.6 27 145-171 12-38 (631)
31 KOG1419 Voltage-gated K+ chann 21.0 56 0.0012 36.3 1.8 21 125-145 337-357 (654)
32 PF04576 Zein-binding: Zein-bi 20.7 4.3E+02 0.0094 22.7 6.7 46 102-159 32-78 (94)
No 1
>PF13178 DUF4005: Protein of unknown function (DUF4005)
Probab=99.69 E-value=1.9e-17 Score=141.03 Aligned_cols=67 Identities=43% Similarity=0.597 Sum_probs=50.1
Q ss_pred CCCcccCCCCC----CCCCCCCccccCCCCCCCCCCCCCCccccchhhhhhccCCCCCCCCCC-------CCccccchhh
Q 014980 315 STPRFANSILS----NAPPTPAKSVCCDSYFRPYSNHPSYMSNTQSFNAKLRSYSAPKQRPEQ-------GPKKRHSLNE 383 (415)
Q Consensus 315 stP~~~~~~~~----~~~~tp~ks~~~~~~~~~~~~~PnYMAnTeSskAK~RSQSAPRQRp~~-------~~rkR~s~~~ 383 (415)
|||++.+..+. ....++.+.+|.+..+.+ +|||||+|||+|||+||||||||||+. ..+||+||+.
T Consensus 1 nsPr~~s~~~~~~~~~~~~s~~~~~~~~~s~~~---~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~ 77 (102)
T PF13178_consen 1 NSPRLRSASSRSSSSPSRSSPQKSSCRRSSFGS---LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPG 77 (102)
T ss_pred CCCCccCcccCCCCCcccCCCcccccccCcCCC---CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCC
Confidence 56775432221 233446677777765542 999999999999999999999999986 3689999985
Q ss_pred h
Q 014980 384 I 384 (415)
Q Consensus 384 ~ 384 (415)
.
T Consensus 78 ~ 78 (102)
T PF13178_consen 78 S 78 (102)
T ss_pred C
Confidence 4
No 2
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.50 E-value=4.7e-07 Score=100.87 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh
Q 014980 125 VREKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNK----EN 199 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~----vi 199 (415)
.....+++.||+.||||+.|+.| ...++++.||+.+||++.|+ .. + +..|++.||..+|++..|+.|.. ++
T Consensus 670 ~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~-~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~ 745 (862)
T KOG0160|consen 670 DVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ET-E-REAAAIGIQKECRSYLNRRRYRALIPASI 745 (862)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hh-H-HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999 77789999999999999999 22 3 56899999999999999999987 78
Q ss_pred hhccchhhhhhhhh
Q 014980 200 RFQPEFRHRKSLER 213 (415)
Q Consensus 200 ~iQs~~R~r~AR~~ 213 (415)
.+|+.+|+.++|.+
T Consensus 746 ~~qs~~r~~~~r~e 759 (862)
T KOG0160|consen 746 TIQSGVRAMLARNE 759 (862)
T ss_pred HHHHHHHHHHhccc
Confidence 89999999999874
No 3
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.77 E-value=3.3e-05 Score=47.88 Aligned_cols=21 Identities=48% Similarity=0.760 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 128 KWAAVKIQNVFRGFLARKALR 148 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaRk~yr 148 (415)
+.||++||++||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999873
No 4
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=97.26 E-value=0.0015 Score=76.15 Aligned_cols=91 Identities=25% Similarity=0.273 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH----
Q 014980 124 GVREKWAAVKIQNVFRGFLARKAL-RAL-------------------------KGLVKLQALVRGYLVRKRAAATL---- 173 (415)
Q Consensus 124 ~~r~~~AAI~IQa~fRGylaRk~y-r~l-------------------------kaiVkLQAlvRG~lvRrq~~~~l---- 173 (415)
.......++.||++|||++.|++| ..+ +..++||.+++....|+.+...+
T Consensus 741 d~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~ 820 (1463)
T COG5022 741 DAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACII 820 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHH
Confidence 345678999999999999999998 333 34466677776666666553321
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHH----HhhhccchhhhhhhhhH
Q 014980 174 -------------------HSMQALIRAQTAVRTQRARRSFNK----ENRFQPEFRHRKSLERF 214 (415)
Q Consensus 174 -------------------r~~~AavrIQa~vRg~~aRr~y~~----vi~iQs~~R~r~AR~~l 214 (415)
..+.+.+.+|+.+|....+++|.. .+.+|..+|...+++++
T Consensus 821 ~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a~r~~ 884 (1463)
T COG5022 821 KLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQL 884 (1463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 124677888888888888888764 77889999988888887
No 5
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.25 E-value=0.00028 Score=45.81 Aligned_cols=21 Identities=48% Similarity=0.662 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 127 EKWAAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 127 ~~~AAI~IQa~fRGylaRk~y 147 (415)
++.+|++||+.||||++|+.|
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999987
No 6
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.23 E-value=0.001 Score=74.80 Aligned_cols=78 Identities=28% Similarity=0.296 Sum_probs=63.8
Q ss_pred cCCCCccchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 113 LTSNGNRAVLG--GVREKWAAVKIQNVFRGFLARKALRALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQR 190 (415)
Q Consensus 113 l~~~~~~~~~~--~~r~~~AAI~IQa~fRGylaRk~yr~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~ 190 (415)
++...++.+.+ ++....+++.||+.+||+++|+......+.+.||..+|+++.|++|.... .+++.||+.+|++.
T Consensus 679 iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~~~~---~~~~~~qs~~r~~~ 755 (862)
T KOG0160|consen 679 IQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYRALI---PASITIQSGVRAML 755 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44444444433 55788999999999999999983345578899999999999999998744 78999999999999
Q ss_pred HHH
Q 014980 191 ARR 193 (415)
Q Consensus 191 aRr 193 (415)
.|.
T Consensus 756 ~r~ 758 (862)
T KOG0160|consen 756 ARN 758 (862)
T ss_pred hcc
Confidence 987
No 7
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.72 E-value=0.001 Score=75.37 Aligned_cols=89 Identities=34% Similarity=0.480 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHH-
Q 014980 126 REKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAAT------L-HSMQALIRAQTAVRTQRARRSFN- 196 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~------l-r~~~AavrIQa~vRg~~aRr~y~- 196 (415)
....||..||..||||+.|+-| ....-+|+||+.+||+.+|++|... + .-.-++-++|+.+|+++.+..+.
T Consensus 808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 4567899999999999999999 6668999999999999999998642 1 11234455666666655543321
Q ss_pred ------------------------H----HhhhccchhhhhhhhhH
Q 014980 197 ------------------------K----ENRFQPEFRHRKSLERF 214 (415)
Q Consensus 197 ------------------------~----vi~iQs~~R~r~AR~~l 214 (415)
+ ++.||+.+|...++.++
T Consensus 888 ~~~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqy 933 (975)
T KOG0520|consen 888 QETAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQY 933 (975)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 1 67788888777777665
No 8
>PTZ00014 myosin-A; Provisional
Probab=96.50 E-value=0.0047 Score=69.86 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 014980 129 WAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKR 168 (415)
Q Consensus 129 ~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq 168 (415)
..++.||++||||++|+.| +.+.+++.||+.+||+++++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888 456788888888888887764
No 9
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=96.49 E-value=0.011 Score=65.23 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARKALRALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~yr~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~ 197 (415)
.+.-.-++.||+.|||+++|.+|+.++++.+|-.++|.+..+ ..+..||..+|+++.++.|.+
T Consensus 693 ~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~wyR~~K~k----------s~v~el~~~~rg~k~~r~ygk 755 (1001)
T KOG0164|consen 693 ERLPSLVTLLQKAWRGWLARQRYRRMKASATIIRWYRRYKLK----------SYVQELQRRFRGAKQMRDYGK 755 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhhhccccCC
Confidence 344567999999999999999996665555554488855433 344568888999988887754
No 10
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.32 E-value=0.0055 Score=37.88 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014980 151 KGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~ 169 (415)
+++|.||+.|||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666654
No 11
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.97 E-value=0.016 Score=67.78 Aligned_cols=71 Identities=34% Similarity=0.506 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 127 EKWAAVKIQNVFRGFLA---RKAL--RALKGLVKLQALVRGYLVRKRAAATL----HSMQALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 127 ~~~AAI~IQa~fRGyla---Rk~y--r~lkaiVkLQAlvRG~lvRrq~~~~l----r~~~AavrIQa~vRg~~aRr~y~~ 197 (415)
.....+-||..||||+. +..| ...+.+|++|++.||+++|+.+...+ .++...+.||+.+|....|..|+.
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~ 643 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKL 643 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHH
Confidence 45567777777777774 1111 34467777777777777777665432 356677777777777777777764
No 12
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=95.23 E-value=0.058 Score=63.25 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 014980 132 VKIQNVFRGFLARKALRAL--------KGLVKLQALVRGYLVRKRAAA----TLHSMQALIRAQTAVRTQRARRSFNK-- 197 (415)
Q Consensus 132 I~IQa~fRGylaRk~yr~l--------kaiVkLQAlvRG~lvRrq~~~----~lr~~~AavrIQa~vRg~~aRr~y~~-- 197 (415)
.+||+..||+..|..++.. -.++.||++|||++. +.. ......-++.+|+..|++..|+.|.+
T Consensus 539 ~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~ 615 (1401)
T KOG2128|consen 539 LRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKL 615 (1401)
T ss_pred hhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4459999999999998443 468899999999996 211 12344779999999999999998764
Q ss_pred ---------HhhhccchhhhhhhhhH
Q 014980 198 ---------ENRFQPEFRHRKSLERF 214 (415)
Q Consensus 198 ---------vi~iQs~~R~r~AR~~l 214 (415)
+|.||+.+|....+..|
T Consensus 616 q~~~~~~~~~i~iqs~~r~f~~r~~y 641 (1401)
T KOG2128|consen 616 QYFKDNMTKIIKIQSKIRKFPNRKDY 641 (1401)
T ss_pred HHHHHhhhhHHHHHHHHHhcccchHH
Confidence 79999999999988876
No 13
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=94.49 E-value=0.044 Score=35.45 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014980 151 KGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~ 169 (415)
++++.||+.|||+++|+++
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777766
No 14
>PTZ00014 myosin-A; Provisional
Probab=94.03 E-value=0.15 Score=58.07 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 151 KGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRS 194 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~ 194 (415)
..++.||++|||++.|+.+... .+++++||+.+|+++.++.
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~---~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKN---IKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 4577899999999999998774 3789999999999988764
No 15
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=93.69 E-value=0.021 Score=65.01 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARKALRALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~yr~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~ 197 (415)
..+....+.++..|+++..|.. ..++..||..+|||..|+.+..+. +-+|+||+.+|++.+|+.|.+
T Consensus 788 ~~~~~~~m~~~~a~~~~~~r~~---~~aa~~iq~~f~~yk~r~~~l~tr---~p~v~iqa~~rg~q~r~dy~k 854 (975)
T KOG0520|consen 788 SEELAVSMKASSAFSMCDDRSD---PAAASRIQKKFRGYKQRKEFLSTR---QPIVKIQAAVRGYQVRKDYRK 854 (975)
T ss_pred hhhhhhhhhcccchhcCccccc---hhHHHHhhhhhhhHHhhhhhcccC---CccccchhhhhchhHhhhhhe
Confidence 4456678888888885555543 467889999999999999998754 678999999999999999986
No 16
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=91.38 E-value=0.59 Score=52.26 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhH
Q 014980 151 KGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNKENRFQPEFRHRKSLERF 214 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~vi~iQs~~R~r~AR~~l 214 (415)
.-++.||..|||+++|.++..++ .+++.|+ ++|.+..+.. +..||..+|+.+.++.|
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmk---a~~~ii~-wyR~~K~ks~---v~el~~~~rg~k~~r~y 753 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMK---ASATIIR-WYRRYKLKSY---VQELQRRFRGAKQMRDY 753 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHH---HHHHHHHHHhhhhcccc
Confidence 34677899999999999997743 4556666 8887766533 44567777777766554
No 17
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=84.67 E-value=2.5 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 150 LKGLVKLQALVRGYLVRKRAAATLH 174 (415)
Q Consensus 150 lkaiVkLQAlvRG~lvRrq~~~~lr 174 (415)
-..++.||+.|||++.|+++...++
T Consensus 745 ~~~~~~iq~aiR~~~~rrr~~~~~k 769 (1463)
T COG5022 745 DNIATRIQRAIRGRYLRRRYLQALK 769 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999976543
No 18
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.91 E-value=2.8 Score=51.85 Aligned_cols=39 Identities=31% Similarity=0.459 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 153 LVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRA 191 (415)
Q Consensus 153 iVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~a 191 (415)
|+.+|+.+|||+.|+.+.....+..++..||..+|.|+.
T Consensus 776 i~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~ 814 (1930)
T KOG0161|consen 776 ITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLK 814 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555554444444444445555555554433
No 19
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.68 E-value=13 Score=42.37 Aligned_cols=23 Identities=43% Similarity=0.537 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~y 147 (415)
.+.+.||+.||.+||||++|+++
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~ 49 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKA 49 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999987
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=75.50 E-value=4.1 Score=43.69 Aligned_cols=33 Identities=30% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 126 REKWAAVKIQNVFRGFLARKALRALKGLVKLQA 158 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~yr~lkaiVkLQA 158 (415)
+--.||+.||++||+|.+|..-+..-..-.+|+
T Consensus 15 raikaAilIQkWYRr~~ARle~rrr~twqIFqs 47 (631)
T KOG0377|consen 15 RAIKAAILIQKWYRRYEARLEARRRCTWQIFQS 47 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH
Confidence 346899999999999999988755444444444
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.50 E-value=16 Score=45.51 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 014980 124 GVREKWAAVKIQNVFRGFLARKAL----RALKGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 124 ~~r~~~AAI~IQa~fRGylaRk~y----r~lkaiVkLQAlvRG~lvRrq~ 169 (415)
..+...-.+.+|+.+|||++|+.| ..+.+|+.||.-+|.|+..+..
T Consensus 769 d~~ls~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w 818 (1930)
T KOG0161|consen 769 DEKLSQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTW 818 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 345567789999999999999999 2347999999999999766643
No 22
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.17 E-value=3.3 Score=47.53 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 124 GVREKWAAVKIQNVFRGFLARKALR 148 (415)
Q Consensus 124 ~~r~~~AAI~IQa~fRGylaRk~yr 148 (415)
..+++++|++||+.||||++|++.+
T Consensus 25 ~rk~e~~av~vQs~~Rg~~~r~~~~ 49 (1001)
T KOG0942|consen 25 ERKQEKNAVKVQSFWRGFRVRHNQK 49 (1001)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999973
No 23
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.69 E-value=20 Score=40.98 Aligned_cols=35 Identities=34% Similarity=0.514 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014980 126 REKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALV 160 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlv 160 (415)
-+..+++++|+..||||+|+++ ..+.++.++-++.
T Consensus 811 yRae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~ 846 (1259)
T KOG0163|consen 811 YRAECVLKAQRIARGYLARKRHRPRIAGIRKINALL 846 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 3567889999999999999999 4445555554443
No 24
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=52.38 E-value=23 Score=40.36 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 128 KWAAVKIQNVFRGFLARKALR 148 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaRk~yr 148 (415)
..-|.+||++||.|++|+.|.
T Consensus 696 d~~A~~IQkAWRrfv~rrky~ 716 (1106)
T KOG0162|consen 696 DGMARRIQKAWRRFVARRKYE 716 (1106)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999993
No 25
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.75 E-value=29 Score=40.32 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 148 RALKGLVKLQALVRGYLVRKRAAA 171 (415)
Q Consensus 148 r~lkaiVkLQAlvRG~lvRrq~~~ 171 (415)
++.++.|++|++|||+++|++...
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~ 50 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKL 50 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHH
Confidence 455889999999999999998765
No 26
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=41.29 E-value=32 Score=24.47 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014980 128 KWAAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaRk~y 147 (415)
--|+.+||-+||-+..|+.-
T Consensus 9 ~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 9 FYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999998763
No 27
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.14 E-value=75 Score=36.63 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014980 149 ALKGLVKLQALVRGYLVRKRAAA 171 (415)
Q Consensus 149 ~lkaiVkLQAlvRG~lvRrq~~~ 171 (415)
...+.+.||+.+|||++|+++..
T Consensus 29 r~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 29 REAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999998764
No 28
>PF15157 IQ-like: IQ-like
Probab=32.52 E-value=44 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 127 EKWAAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 127 ~~~AAI~IQa~fRGylaRk~y 147 (415)
.+.-+.+||.+||-|++|.-.
T Consensus 46 Leskvkiiqrawre~lq~qd~ 66 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDP 66 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCC
Confidence 466788999999999999764
No 29
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=30.60 E-value=1.6e+02 Score=34.19 Aligned_cols=21 Identities=43% Similarity=0.707 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 151 KGLVKLQALVRGYLVRKRAAA 171 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~~~ 171 (415)
..++++|+++||||+|+++..
T Consensus 814 e~v~k~Q~~~Rg~L~rkr~~~ 834 (1259)
T KOG0163|consen 814 ECVLKAQRIARGYLARKRHRP 834 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhch
Confidence 578999999999999998743
No 30
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=22.87 E-value=1.7e+02 Score=32.00 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 145 KALRALKGLVKLQALVRGYLVRKRAAA 171 (415)
Q Consensus 145 k~yr~lkaiVkLQAlvRG~lvRrq~~~ 171 (415)
+.-+++++.+.||.|+|++.+|..+..
T Consensus 12 ~s~raikaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 12 KSTRAIKAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333568999999999999999987653
No 31
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=21.00 E-value=56 Score=36.29 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARK 145 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk 145 (415)
.+.+.||..||.+||-|.+-.
T Consensus 337 rrr~pAA~LIQc~WR~yaa~~ 357 (654)
T KOG1419|consen 337 RRRNPAASLIQCAWRYYAAEN 357 (654)
T ss_pred hhcchHHHHHHHHHHHHhccc
Confidence 345789999999999998765
No 32
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=20.66 E-value=4.3e+02 Score=22.73 Aligned_cols=46 Identities=26% Similarity=0.372 Sum_probs=26.8
Q ss_pred HHHHHHHHhhhcCCCCccchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 014980 102 AAAQAAVAVVRLTSNGNRAVLGGVREKWAAVKIQNV-FRGFLARKALRALKGLVKLQAL 159 (415)
Q Consensus 102 ~~~~aa~~vvrl~~~~~~~~~~~~r~~~AAI~IQa~-fRGylaRk~yr~lkaiVkLQAl 159 (415)
||-+|-+.+.||+ .++|++.+.+. |+.+..-+.-.....|-.|+.+
T Consensus 32 AA~EAMaMI~RLQ------------~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~ 78 (94)
T PF04576_consen 32 AASEAMAMILRLQ------------EEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDI 78 (94)
T ss_pred HHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445556777776 57889988875 6666554443333444444433
Done!