Query 014980
Match_columns 415
No_of_seqs 346 out of 1311
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 99.5 2.8E-14 9.6E-19 160.9 9.0 123 110-233 794-929 (1080)
2 2dfs_A Myosin-5A; myosin-V, in 99.4 2.6E-12 8.8E-17 145.0 13.7 89 126-215 766-859 (1080)
3 2ix7_C Myosin-5A; contractIle 99.2 6.2E-11 2.1E-15 89.4 8.4 54 126-180 3-57 (58)
4 1n2d_C IQ2 and IQ3 motifs from 98.9 5.8E-09 2E-13 75.5 7.1 42 128-169 3-47 (48)
5 1n2d_C IQ2 and IQ3 motifs from 98.7 3.4E-08 1.2E-12 71.5 7.6 45 150-195 3-47 (48)
6 2ix7_C Myosin-5A; contractIle 98.4 9.6E-07 3.3E-11 66.3 7.9 45 150-197 5-49 (58)
7 1wdc_A Scallop myosin; calcium 97.6 0.00015 5.2E-09 55.4 6.9 41 153-193 9-49 (64)
8 2bl0_A Major plasmodial myosin 97.5 0.00014 4.8E-09 55.5 5.9 42 152-193 6-47 (63)
9 1wdc_A Scallop myosin; calcium 97.5 0.00024 8.1E-09 54.3 6.8 45 125-169 3-51 (64)
10 2bl0_A Major plasmodial myosin 97.4 0.00033 1.1E-08 53.4 6.1 43 127-169 3-49 (63)
11 1kk8_A Myosin heavy chain, str 97.1 0.00044 1.5E-08 76.5 6.6 44 126-169 777-824 (837)
12 2l53_B CAM, voltage-gated sodi 96.9 0.00083 2.9E-08 45.1 3.6 23 125-147 3-25 (31)
13 2kxw_B Sodium channel protein 96.9 0.0006 2.1E-08 44.4 2.8 21 125-145 3-23 (27)
14 1kk8_A Myosin heavy chain, str 96.8 0.0028 9.6E-08 70.2 8.7 46 151-196 780-825 (837)
15 1i84_S Smooth muscle myosin he 96.1 0.011 3.7E-07 67.5 8.6 44 127-170 791-838 (1184)
16 1i84_S Smooth muscle myosin he 96.1 0.0061 2.1E-07 69.5 6.5 46 150-195 792-837 (1184)
17 3gn4_A Myosin-VI; unconvention 94.7 0.038 1.3E-06 49.3 5.4 48 106-160 30-78 (148)
18 4anj_A Unconventional myosin-V 88.9 0.32 1.1E-05 55.2 4.9 68 128-214 775-843 (1052)
19 3gn4_A Myosin-VI; unconvention 87.1 2.5 8.7E-05 37.6 8.6 20 177-196 46-65 (148)
20 4anj_A Unconventional myosin-V 86.9 0.98 3.4E-05 51.3 7.3 43 150-195 774-816 (1052)
21 1w7j_A Myosin VA; motor protei 86.3 0.52 1.8E-05 52.0 4.6 26 126-151 766-791 (795)
22 4dck_A Sodium channel protein 81.5 1.3 4.5E-05 40.1 4.3 27 123-149 125-151 (168)
23 2l53_B CAM, voltage-gated sodi 81.2 1.7 5.7E-05 29.1 3.6 21 175-195 5-25 (31)
24 2kxw_B Sodium channel protein 78.1 2.1 7.3E-05 27.6 3.2 19 175-193 5-23 (27)
25 1w7j_A Myosin VA; motor protei 48.2 20 0.00069 39.5 5.7 21 177-197 769-789 (795)
26 3dvk_B Voltage-dependent R-typ 34.3 18 0.00061 22.6 1.5 17 128-144 6-22 (23)
27 4dck_A Sodium channel protein 31.9 50 0.0017 29.7 4.7 24 174-197 128-151 (168)
28 3bxl_B CAM, voltage-dependent 25.1 51 0.0018 21.0 2.4 18 129-146 3-20 (26)
29 2f3y_B Voltage-dependent L-typ 23.1 57 0.0019 20.8 2.3 18 130-147 4-21 (26)
30 1m45_B IQ2, IQ2 motif from MYO 20.4 1.3E+02 0.0045 18.7 3.6 19 152-170 5-23 (26)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.49 E-value=2.8e-14 Score=160.88 Aligned_cols=123 Identities=26% Similarity=0.274 Sum_probs=86.8
Q ss_pred hhhcCCCCccch----hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 110 VVRLTSNGNRAV----LGGVREKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQT 184 (415)
Q Consensus 110 vvrl~~~~~~~~----~~~~r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa 184 (415)
++.+++..++.. +..+++..||++||++||||++|+.| ..+.+++.||++|||+++|+.+.. ++...+++.||+
T Consensus 794 ai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~ 872 (1080)
T 2dfs_A 794 AITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQK 872 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 344555555532 23456788999999999999999999 566899999999999999999887 556679999999
Q ss_pred HHHHHHHHHHHHH----HhhhccchhhhhhhhhH----HhhhhhhcccccccccCCC
Q 014980 185 AVRTQRARRSFNK----ENRFQPEFRHRKSLERF----DETRSEIHSKRISTSLESP 233 (415)
Q Consensus 185 ~vRg~~aRr~y~~----vi~iQs~~R~r~AR~~l----~ears~~h~k~ls~~lE~~ 233 (415)
.||++++|+.|.. ++.||+.||++++|+++ .++++..+++..+..||++
T Consensus 873 ~~Rg~l~R~~y~~~~~aai~iQs~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~k 929 (1080)
T 2dfs_A 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK 929 (1080)
T ss_dssp HHTTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHTTTC--------------------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999864 89999999999999987 5677777887777788775
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.36 E-value=2.6e-12 Score=145.00 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh
Q 014980 126 REKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNK----ENR 200 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~----vi~ 200 (415)
+...+|+.||++||||++|+.| +...+++.||++|||+++|+.+.. +++..|+++||+.||+|++|+.|.. ++.
T Consensus 766 ~l~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~ 844 (1080)
T 2dfs_A 766 KLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYATF-LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIA 844 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccc-cccchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999 566899999999999999999887 5677899999999999999999876 888
Q ss_pred hccchhhhhhhhhHH
Q 014980 201 FQPEFRHRKSLERFD 215 (415)
Q Consensus 201 iQs~~R~r~AR~~l~ 215 (415)
||+.||++++|+++.
T Consensus 845 IQs~~Rg~laRr~~~ 859 (1080)
T 2dfs_A 845 LQALLRGYLVRNKYQ 859 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988773
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.19 E-value=6.2e-11 Score=89.42 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 126 REKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAATLHSMQALI 180 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~lr~~~Aav 180 (415)
+++.||++||++||||++|+.| ....++|.||++|||+++|+.+.. ++...|++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA~ 57 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAAT 57 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCcc
Confidence 5678999999999999999999 555799999999999999999988 44545543
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.86 E-value=5.8e-09 Score=75.54 Aligned_cols=42 Identities=29% Similarity=0.345 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 014980 128 KWAAVKIQNVFRGFLARKALRAL---KGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaRk~yr~l---kaiVkLQAlvRG~lvRrq~ 169 (415)
..+++.||++||||++|+.|..+ .++++||++|||+++|+.+
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 35677777777777777777332 2566666666666666543
No 5
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.72 E-value=3.4e-08 Score=71.45 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 150 LKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSF 195 (415)
Q Consensus 150 lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y 195 (415)
..++|.||+.+||+++|+.+.. ++.+.+++.||+.|||+++|+.|
T Consensus 3 r~a~i~iQ~~~Rg~l~R~~~~~-~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 3 SQAIKYLQNNIKGFIIRQRVND-EMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHhh
Confidence 4689999999999999999988 55667999999999999999876
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=98.39 E-value=9.6e-07 Score=66.27 Aligned_cols=45 Identities=31% Similarity=0.369 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 150 LKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 150 lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~ 197 (415)
..+++.||+.|||+++|+.|..+. .+++.||+.|||+++|+.|..
T Consensus 5 ~~aai~IQ~~~Rg~~~Rk~~~~~r---~aai~IQ~~~Rg~~aR~~~~~ 49 (58)
T 2ix7_C 5 RAACIRIQKTIRGWLLRKRYLCMQ---RAAITVQRYVRGYQARCYAKF 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999998743 699999999999999998875
No 7
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.59 E-value=0.00015 Score=55.38 Aligned_cols=41 Identities=29% Similarity=0.335 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 153 LVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARR 193 (415)
Q Consensus 153 iVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr 193 (415)
++.||+.+||++.|+.+..++.+..|+..||..+|++..++
T Consensus 9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555555444444445555555555555543
No 8
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.53 E-value=0.00014 Score=55.50 Aligned_cols=42 Identities=19% Similarity=0.138 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 152 GLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARR 193 (415)
Q Consensus 152 aiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr 193 (415)
.++.||+.+||+++|+.+..++.+..|+..||..+|++..++
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 355566666666666666665555566666777766666654
No 9
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.49 E-value=0.00024 Score=54.29 Aligned_cols=45 Identities=31% Similarity=0.358 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARKALRA----LKGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~yr~----lkaiVkLQAlvRG~lvRrq~ 169 (415)
.+....++.||+.+|||++|+.|.. ..++..||..+|+++.++..
T Consensus 3 ~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~w 51 (64)
T 1wdc_A 3 ERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 51 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4566789999999999999999933 46888999999999988754
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.36 E-value=0.00033 Score=53.36 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 014980 127 EKWAAVKIQNVFRGFLARKALRA----LKGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 127 ~~~AAI~IQa~fRGylaRk~yr~----lkaiVkLQAlvRG~lvRrq~ 169 (415)
....++.||+.+|||++|+.|.. ..++..||..+|+++.++..
T Consensus 3 l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~w 49 (63)
T 2bl0_A 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49 (63)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45678999999999999999933 46888999999999988754
No 11
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=97.14 E-value=0.00044 Score=76.53 Aligned_cols=44 Identities=32% Similarity=0.380 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 014980 126 REKWAAVKIQNVFRGFLARKALRA----LKGLVKLQALVRGYLVRKRA 169 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~yr~----lkaiVkLQAlvRG~lvRrq~ 169 (415)
+....|+.||++||||++|+.|.. +.+++.||+.|||++.++.+
T Consensus 777 ~l~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 777 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 344567777777777777777733 24556666666666665543
No 12
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=96.89 E-value=0.00083 Score=45.07 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk~y 147 (415)
.+|+.+|++||.+||+|+.|+.+
T Consensus 3 k~Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 3 GSEEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Confidence 36889999999999999999764
No 13
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=96.87 E-value=0.0006 Score=44.41 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 125 VREKWAAVKIQNVFRGFLARK 145 (415)
Q Consensus 125 ~r~~~AAI~IQa~fRGylaRk 145 (415)
..++.||++||.+||+|+.++
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999875
No 14
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.76 E-value=0.0028 Score=70.19 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 151 KGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFN 196 (415)
Q Consensus 151 kaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~ 196 (415)
..++.||++|||++.|+++..++.+..|++.||+.||+++.++.|.
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~~ 825 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQ 825 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchH
Confidence 5688999999999999999987666789999999999999998754
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.09 E-value=0.011 Score=67.51 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 014980 127 EKWAAVKIQNVFRGFLARKALRA----LKGLVKLQALVRGYLVRKRAA 170 (415)
Q Consensus 127 ~~~AAI~IQa~fRGylaRk~yr~----lkaiVkLQAlvRG~lvRrq~~ 170 (415)
....++.||++||||++|+.|.. ..+++.||+.||+|+.++.+.
T Consensus 791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~~ 838 (1184)
T 1i84_S 791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWP 838 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44678999999999999999843 268889999999999887654
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.08 E-value=0.0061 Score=69.55 Aligned_cols=46 Identities=26% Similarity=0.361 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 150 LKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSF 195 (415)
Q Consensus 150 lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y 195 (415)
...++.||+.|||++.|+.|..++....+++.||+.||+|+.++.|
T Consensus 792 ~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 792 TDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678899999999999999998766778999999999999998654
No 17
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=94.72 E-value=0.038 Score=49.34 Aligned_cols=48 Identities=25% Similarity=0.406 Sum_probs=33.8
Q ss_pred HHHHhhhcCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 014980 106 AAVAVVRLTSNGNRAVLGGVREKWAAVKIQNVFRGFLARKAL-RALKGLVKLQALV 160 (415)
Q Consensus 106 aa~~vvrl~~~~~~~~~~~~r~~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlv 160 (415)
++..|+.|... -.-+..++|+||+.+|||++|+.+ -...+++++.++.
T Consensus 30 ~~lsvIKLknK-------I~yR~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 30 CSLSVIKLKNK-------IKYRAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34456666532 134678899999999999999999 3447777776664
No 18
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=88.91 E-value=0.32 Score=55.24 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh
Q 014980 128 KWAAVKIQNVFRGFLARKAL-RALKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSFNKENRFQPEFR 206 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaRk~y-r~lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y~~vi~iQs~~R 206 (415)
..+|+.||+ +|||++|++| +...+++.||.+.|++..|+.. .+...+.|..+..++..+|
T Consensus 775 ~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~------------------~~~w~~l~~~v~pll~~~~ 835 (1052)
T 4anj_A 775 DHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA------------------VSKGEELFTGVVPILVELD 835 (1052)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTTSSCEEEEEEEE
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------chHHHHHHHhhhhhHHHHH
Confidence 344555553 5666666666 3345556666655554322211 1112223444677888888
Q ss_pred hhhhhhhH
Q 014980 207 HRKSLERF 214 (415)
Q Consensus 207 ~r~AR~~l 214 (415)
++..+++|
T Consensus 836 ~~~~~r~~ 843 (1052)
T 4anj_A 836 GDVNGHKF 843 (1052)
T ss_dssp EEETTEEE
T ss_pred HHHHhhhh
Confidence 88888887
No 19
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=87.05 E-value=2.5 Score=37.57 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014980 177 QALIRAQTAVRTQRARRSFN 196 (415)
Q Consensus 177 ~AavrIQa~vRg~~aRr~y~ 196 (415)
.++++||+.+|||++|+.|.
T Consensus 46 ~~~i~iQktvR~~L~rkkhk 65 (148)
T 3gn4_A 46 EACIKMQKTIRMWLCKRRHK 65 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45555555555555555443
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.94 E-value=0.98 Score=51.29 Aligned_cols=43 Identities=14% Similarity=0.055 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 150 LKGLVKLQALVRGYLVRKRAAATLHSMQALIRAQTAVRTQRARRSF 195 (415)
Q Consensus 150 lkaiVkLQAlvRG~lvRrq~~~~lr~~~AavrIQa~vRg~~aRr~y 195 (415)
+..++.||..+||++.|+++..+. .+++.||..+|.++.|+.+
T Consensus 774 ~~~~~~~iq~~r~~l~r~~~~k~~---~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKRVNHWLICSRWKKVQ---WCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHc
Confidence 345555666789999999997633 6888899988888766543
No 21
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=86.31 E-value=0.52 Score=51.97 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 126 REKWAAVKIQNVFRGFLARKALRALK 151 (415)
Q Consensus 126 r~~~AAI~IQa~fRGylaRk~yr~lk 151 (415)
+...+|+.||++||||++|+.|..++
T Consensus 766 ~l~~~~~~iQ~~~Rg~l~R~~~~~~r 791 (795)
T 1w7j_A 766 KLRAACIRIQKTIRGWLMRKKYMRMR 791 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888885443
No 22
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=81.46 E-value=1.3 Score=40.13 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 123 GGVREKWAAVKIQNVFRGFLARKALRA 149 (415)
Q Consensus 123 ~~~r~~~AAI~IQa~fRGylaRk~yr~ 149 (415)
....+..||++||.+||.|+.|+.++.
T Consensus 125 ~~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 125 RRKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 346788999999999999999887743
No 23
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=81.17 E-value=1.7 Score=29.05 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 175 SMQALIRAQTAVRTQRARRSF 195 (415)
Q Consensus 175 ~~~AavrIQa~vRg~~aRr~y 195 (415)
+..+++.||..||+|+.++..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346889999999999988653
No 24
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=78.11 E-value=2.1 Score=27.63 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014980 175 SMQALIRAQTAVRTQRARR 193 (415)
Q Consensus 175 ~~~AavrIQa~vRg~~aRr 193 (415)
+..+++.||..||+|+.++
T Consensus 5 Ee~aA~vIQrA~R~yl~~~ 23 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQ 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3468999999999998874
No 25
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=48.19 E-value=20 Score=39.46 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 014980 177 QALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 177 ~AavrIQa~vRg~~aRr~y~~ 197 (415)
.+++.||+.||++++|+.|.+
T Consensus 769 ~~~~~iQ~~~Rg~l~R~~~~~ 789 (795)
T 1w7j_A 769 AACIRIQKTIRGWLMRKKYMR 789 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666655543
No 26
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=34.29 E-value=18 Score=22.57 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 014980 128 KWAAVKIQNVFRGFLAR 144 (415)
Q Consensus 128 ~~AAI~IQa~fRGylaR 144 (415)
--|+.+||-+||.+..|
T Consensus 6 iYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 6 IYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 35789999999998765
No 27
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=31.94 E-value=50 Score=29.71 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014980 174 HSMQALIRAQTAVRTQRARRSFNK 197 (415)
Q Consensus 174 r~~~AavrIQa~vRg~~aRr~y~~ 197 (415)
++..|++.||..||.++.|+.+..
T Consensus 128 ~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 128 HEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 344688899999999988877655
No 28
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=25.15 E-value=51 Score=21.04 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014980 129 WAAVKIQNVFRGFLARKA 146 (415)
Q Consensus 129 ~AAI~IQa~fRGylaRk~ 146 (415)
-||.+||-+||-+..|+.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 378899999999988764
No 29
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=23.11 E-value=57 Score=20.81 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014980 130 AAVKIQNVFRGFLARKAL 147 (415)
Q Consensus 130 AAI~IQa~fRGylaRk~y 147 (415)
|...||-+||.+..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 456799999998888753
No 30
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=20.36 E-value=1.3e+02 Score=18.70 Aligned_cols=19 Identities=26% Similarity=0.649 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014980 152 GLVKLQALVRGYLVRKRAA 170 (415)
Q Consensus 152 aiVkLQAlvRG~lvRrq~~ 170 (415)
+|--||..++|++.|+++.
T Consensus 5 aikylqnnikgfiirqrvn 23 (26)
T 1m45_B 5 AIKYLQNNIKGFIIRQRVN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccceEEEeeecc
Confidence 4445666666666665543
Done!