BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014981
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 117/429 (27%), Positives = 201/429 (46%), Gaps = 54/429 (12%)
Query: 24 GCCIYRVPQGWRCLHPNDYTPKMVSIGPLHHGNEELKAMEEHKLRYLRCFL---QRTNVS 80
CCI+RVP+ + L+P Y PK+VSIGP H+G + L+ +++HK R L+ FL ++ +V
Sbjct: 45 SCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVE 104
Query: 81 IEYFLTFIKVKEAELRNCYAETIAFNSDDFATMIFVDAIFLLEFFLRGFLRDFITSDDRI 140
+ + E ++R Y+E + D M+ +D F+L FL + S+D I
Sbjct: 105 ENVLVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLI-MSGNIELSEDPI 162
Query: 141 YGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATYGDYYEGLSLFRISRWFWRSGFP 200
+ P L+ + DL LLENQ+P F+L L+ +K D L RI+ F+++
Sbjct: 163 FSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVSSD------LNRIAFHFFKN--- 213
Query: 201 NLPIDKD---LLDTKFSEAKHFLDLPRLCLQP----------PQSPAQI---------GF 238
PIDK+ + +AKH LDL R P P Q+
Sbjct: 214 --PIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSV 271
Query: 239 RGQKMP---GAMELHQTGVKFNVGTSKNP--FDITFDKGIVKIPFVTIYDNTEKFYRNVL 293
+ +P A L G+KF + SK ++ K ++IP + F+ N +
Sbjct: 272 DSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNCV 331
Query: 294 AFERMH-GYTRYLNDYIIIMSYLAHTPED------GKLLIQNGIVGLGNSERLSNFFLSL 346
AFE+ + + + YI+ M L + ED KL+I+N G++ +S FF ++
Sbjct: 332 AFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIEN---HFGSNNEVSEFFKTI 388
Query: 347 IKECPMGTRFGY-TNLVEDLQSYCKSPWHSWKANLRQNYFNTPWASISVAGAVILLVLTL 405
K+ Y N+ + + Y K ++ A R +F +PW +S + +++LT+
Sbjct: 389 SKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTM 448
Query: 406 IQTACSVIG 414
+Q+ +++
Sbjct: 449 LQSTVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 95/203 (46%), Gaps = 17/203 (8%)
Query: 25 CCIYRVPQGWRCLHPNDYTPKMVSIGPLHHGNEELKAMEEHKLRYLRCFLQRTN-VSIEY 83
I+ VP+ C HP+ YTP VSIGP H EL ME +KL R + N
Sbjct: 43 VSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFRFHD 102
Query: 84 FLTFIKVKEAELRNCYAETIAFNSDDFATMIFVDAIFLLEFFLRGFLRDFITSDDRIYGK 143
+ ++ E ++R CY + I FN + ++ VD+ FL+EF R T +R+
Sbjct: 103 LVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINRVGH- 161
Query: 144 PRLIDQLIGDLWLLENQLPLFILNEL--FDLAKTATYGDYYEGLSLFRISRWFWRSGFPN 201
++++ D+ ++ENQ+PLF+L + F L T + D L + + P
Sbjct: 162 ----NEILRDIMMIENQIPLFVLRKTLEFQLESTESADDL-----LLSVLTGLCKDLSP- 211
Query: 202 LPI---DKDLLDTKFSEAKHFLD 221
L I D +L +F E H LD
Sbjct: 212 LVIKFDDDQILKAQFQECNHILD 234
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 243 MPGAMELHQTGVKFNVGTSKNPFDITFD--KGIVKIPFVTIYDNTEKFYRNVLAFERMHG 300
+P +LH+ GV+F N +TFD G +P + + NTE RN++A+E +
Sbjct: 345 IPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNT 404
Query: 301 -----YTRYLNDYIIIMSYLAHTPEDGKLLIQNGIV--GLGNSERLSNFFLSLIKECPMG 353
+TRY +++ + + ED +LL + G++ L + + + + + K +
Sbjct: 405 SGPLVFTRYTE----LINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL- 459
Query: 354 TRFGYTN-LVEDLQSYCKSPWHSWKANLRQNYFNTPW 389
T+ G+ + +ED+ Y W L + Y W
Sbjct: 460 TKVGFLDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496
>sp|P39011|BEM4_YEAST Bud emergence protein 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=BEM4 PE=1 SV=1
Length = 633
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 19/121 (15%)
Query: 72 CFLQRTNVSIEYFLTFIKVKEAELRNCYAETIAFNSDDFATMIFVDAIFLLEFFLRGFLR 131
CF T++SI + F ++ +R C A I N D+ ++ LL +++ G L+
Sbjct: 72 CF-HDTSISINDKIAFYEISSEVIR-CIANAIIDNDDNREILLDSGGKKLLNYYIGGVLQ 129
Query: 132 -DFITSDDRIYGKPRLIDQL------------IGDLWLLENQLPLFILNELFDLAKTATY 178
D I+SD + L+D+L IG+L EN P FI LF L KT Y
Sbjct: 130 LDEISSDK---SEDSLVDKLQMRSVVLLRNFCIGNLKYTENLAP-FIRGPLFVLLKTTQY 185
Query: 179 G 179
Sbjct: 186 S 186
>sp|Q54MV6|BGAL2_DICDI Probable beta-galactosidase 2 OS=Dictyostelium discoideum GN=glb2
PE=3 SV=1
Length = 761
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 198 GFPNLPIDKDLLDTKFSEAKHFLDLPRLCLQPPQSPAQIGFRGQKMPGAMELHQTGVKF- 256
G PN P K L +KF + H ++ L QPP+SP F Q +E+HQ G+
Sbjct: 337 GQPNEP--KFSLSSKFHQVLHAIESDLLNNQPPKSPT---FLSQ----FIEVHQYGINLS 387
Query: 257 ---NVGTSKNP 264
N GTS P
Sbjct: 388 FITNYGTSTTP 398
>sp|Q9PL51|GLGB_CHLMU 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia muridarum
(strain MoPn / Nigg) GN=glgB PE=3 SV=1
Length = 737
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 125 FLRGFLRDFITSDDRIYGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATY--GDYY 182
F FL F + D+ ++GK LI ++ GD W QL L + ++ K + G++
Sbjct: 509 FSERFLLPF-SHDEVVHGKRSLIGKMPGDAWRQFAQLRLLLGYQICQPGKKLLFMGGEFG 567
Query: 183 EGLSLFRISRWFWRSGFPNLPIDKDLLDTKFSEAKHFLD--LPRLCLQPPQ 231
+G R PN +D DLLD + + H L L + PQ
Sbjct: 568 QG-----------REWSPNRELDWDLLDIHYHQGVHLCSQKLNSLYVNSPQ 607
>sp|B0B998|GLGB_CHLT2 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
serovar L2 (strain 434/Bu / ATCC VR-902B) GN=glgB PE=3
SV=1
Length = 738
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 125 FLRGFLRDFITSDDRIYGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATY--GDYY 182
F FL F + D+ ++GK LI ++ GD W QL L + ++ K + G++
Sbjct: 509 FSERFLLPF-SHDEVVHGKRSLIGKMPGDAWRQFAQLRLLLGYQICQPGKKLLFMGGEFG 567
Query: 183 EGLSLFRISRWFWRSGFPNLPIDKDLLDTKFSEAKHFL--DLPRLCLQPPQ 231
+G R P +D +LLD + + H +L L +Q PQ
Sbjct: 568 QG-----------REWSPGRELDWELLDISYHQGVHLCSQELNALYVQSPQ 607
>sp|Q3KKH0|GLGB_CHLTA 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
serovar A (strain HAR-13 / ATCC VR-571B) GN=glgB PE=3
SV=1
Length = 738
Score = 32.3 bits (72), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 125 FLRGFLRDFITSDDRIYGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATY--GDYY 182
F FL F + D+ ++GK LI ++ GD W QL L + ++ K + G++
Sbjct: 509 FSERFLLPF-SHDEVVHGKRSLIGKMPGDAWRQFAQLRLLLGYQICQPGKKLLFMGGEFG 567
Query: 183 EGLSLFRISRWFWRSGFPNLPIDKDLLDTKFSEAKHFL--DLPRLCLQPPQ 231
+G R P +D +LLD + + H +L L +Q PQ
Sbjct: 568 QG-----------REWSPGRELDWELLDISYHQGVHLCSQELNALYVQSPQ 607
>sp|O84874|GLGB_CHLTR 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=glgB PE=3 SV=1
Length = 738
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 125 FLRGFLRDFITSDDRIYGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATY--GDYY 182
F FL F + D+ ++GK LI ++ GD W QL L + ++ K + G++
Sbjct: 509 FSERFLLPF-SHDEVVHGKRSLIGKMPGDAWRQFAQLRLLLGYQICQPGKKLLFMGGEFG 567
Query: 183 EGLSLFRISRWFWRSGFPNLPIDKDLLDTKFSEAKHFL--DLPRLCLQPPQ 231
+G R P +D +LLD + + H +L L +Q PQ
Sbjct: 568 QG-----------REWSPGRELDWELLDISYHQGVHLCSQELNALYVQSPQ 607
>sp|B0BAX7|GLGB_CHLTB 1,4-alpha-glucan branching enzyme GlgB OS=Chlamydia trachomatis
serovar L2b (strain UCH-1/proctitis) GN=glgB PE=3 SV=1
Length = 738
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 16/111 (14%)
Query: 125 FLRGFLRDFITSDDRIYGKPRLIDQLIGDLWLLENQLPLFILNELFDLAKTATY--GDYY 182
F FL F + D+ ++GK LI ++ GD W QL L + ++ K + G++
Sbjct: 509 FSERFLLPF-SHDEVVHGKRSLIGKMPGDAWRQFAQLRLLLGYQICQPGKKLLFMGGEFG 567
Query: 183 EGLSLFRISRWFWRSGFPNLPIDKDLLDTKFSEAKHFL--DLPRLCLQPPQ 231
+G R P +D +LLD + + H +L L +Q PQ
Sbjct: 568 QG-----------REWSPGRELDWELLDISYHQGVHLCSQELNALYVQSPQ 607
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,854,239
Number of Sequences: 539616
Number of extensions: 6959475
Number of successful extensions: 17301
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 17290
Number of HSP's gapped (non-prelim): 13
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)