Query 014981
Match_columns 415
No_of_seqs 125 out of 676
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:33:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014981.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014981hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bc8_C SAP-1, protein (SAP-1 E 21.6 2E+02 0.0069 22.4 5.9 52 335-390 37-90 (93)
2 1awc_A Protein (GA binding pro 18.1 94 0.0032 25.1 3.3 60 334-397 32-93 (110)
3 2veb_A Protoglobin; hemoprotei 17.5 28 0.00096 31.1 0.1 23 309-331 26-48 (195)
4 4avp_A ETS translocation varia 16.7 2.2E+02 0.0075 22.7 5.2 57 334-394 43-101 (106)
5 1yo5_C SAM pointed domain cont 16.0 1.7E+02 0.0058 23.0 4.3 42 328-373 38-79 (97)
6 2l27_B Peptide agonist; CRF, E 15.2 27 0.00091 22.7 -0.5 22 277-299 1-22 (38)
7 1hbx_G ETS-domain protein ELK- 15.0 2.5E+02 0.0087 24.0 5.4 60 328-391 22-92 (157)
8 1fli_A FLI-1; transcription/DN 14.6 1.8E+02 0.0062 22.9 4.1 36 334-373 37-72 (98)
9 3jtg_A ETS-related transcripti 14.3 1.9E+02 0.0063 23.0 4.2 41 328-372 32-72 (103)
10 2kru_A Light-independent proto 14.1 52 0.0018 23.9 0.7 14 159-172 15-28 (63)
No 1
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=21.60 E-value=2e+02 Score=22.40 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=33.3
Q ss_pred ChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCch-hhhh-hhhcccccccchH
Q 014981 335 NSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPW-HSWK-ANLRQNYFNTPWA 390 (415)
Q Consensus 335 sdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~-~~~~-a~l~~~yf~npw~ 390 (415)
+.++||+++-.- |+- +.=+ |.++.+.+.-||++.- .+.. ..+...|-..|..
T Consensus 37 d~~~VArlWG~r-Knk--~~Mn-YeklSRaLRyYY~~~il~Kv~g~r~vY~F~~~p~~ 90 (93)
T 1bc8_C 37 QAEEVARLWGIR-KNK--PNMN-YDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYPEI 90 (93)
T ss_dssp THHHHHHHHHHH-HTC--TTCC-HHHHHHHHHHHHHHTSEEECTTSTTEEEETTTTGG
T ss_pred CHHHHHHHHHhc-CCC--CCcC-HHHHHHHHHHHHhcCcEEecCCCeEEEEeCCChHH
Confidence 679999999744 221 2335 9999999999998653 2221 2344555556653
No 2
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=18.15 E-value=94 Score=25.10 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=41.7
Q ss_pred CChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCch-hhhh-hhhcccccccchHHHHHHHH
Q 014981 334 GNSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPW-HSWK-ANLRQNYFNTPWASISVAGA 397 (415)
Q Consensus 334 gsdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~-~~~~-a~l~~~yf~npw~~is~~aA 397 (415)
-+.++||+++-.- |+- +.=+ |.++.+.+.-||++.- .+-. ..+...|-.+|+..++.-++
T Consensus 32 ~d~e~VArlWG~r-Knk--p~Mn-YeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~ 93 (110)
T 1awc_A 32 NQPELVAQKWGQR-KNK--PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAA 93 (110)
T ss_dssp SSHHHHHHHHHHH-HTC--TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHH
T ss_pred cCHHHHHHHHHHc-cCC--CCCC-HHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHH
Confidence 4779999999754 332 2335 9999999999999763 2222 23566677889987776554
No 3
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=17.50 E-value=28 Score=31.13 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=17.2
Q ss_pred HHHHHhhcCChhhHHHHHHCCce
Q 014981 309 IIIMSYLAHTPEDGKLLIQNGIV 331 (415)
Q Consensus 309 v~fM~~Li~t~~DV~lL~~~gIi 331 (415)
=.+-...-=|++|++.|++.|=+
T Consensus 26 e~Lk~~~~fTeeD~~~L~~l~~~ 48 (195)
T 2veb_A 26 KLLKEAVMFTAEDEEYIQKAGEV 48 (195)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHhHHH
Confidence 34444555699999999998876
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=16.68 E-value=2.2e+02 Score=22.72 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=37.5
Q ss_pred CChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCch-hhhhh-hhcccccccchHHHHH
Q 014981 334 GNSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPW-HSWKA-NLRQNYFNTPWASISV 394 (415)
Q Consensus 334 gsdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~-~~~~a-~l~~~yf~npw~~is~ 394 (415)
-+.++||+++-.-- +- +.-+ |.++.+.+.-||.+.- .+... .+..++-.+|-..+|.
T Consensus 43 ~dp~~VA~lWG~rK-nk--p~M~-YeKlSRaLRyYY~kgii~Kv~G~r~vYkF~~~p~~l~~~ 101 (106)
T 4avp_A 43 IEPEEVARRWGIQK-NR--PAMN-YDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSM 101 (106)
T ss_dssp SSHHHHHHHHHHHT-TC--TTCC-HHHHHHHHHHHHHHTSEEECTTCSSEEEECCSHHHHHHH
T ss_pred cCHHHHHHHHHhcc-CC--CCcC-HHHHHHHHHHHHhcCeEEecCCCeEEEEecCCHHHHHhc
Confidence 36789999997543 21 2345 9999999999999653 22221 3445566778766654
No 5
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=16.01 E-value=1.7e+02 Score=23.04 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCceecCChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCch
Q 014981 328 NGIVGLGNSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPW 373 (415)
Q Consensus 328 ~gIi~lgsdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~ 373 (415)
+|++-+-+.++||+++-.- |+- +.=+ |.++.+.+.-||++.-
T Consensus 38 ~g~Fkl~d~~~VArlWG~r-Knk--p~Mn-YeklSRaLRyYY~~~i 79 (97)
T 1yo5_C 38 KGIFKIEDSAQVARLWGIR-KNR--PAMN-YDKLSRSIRQYYKKGI 79 (97)
T ss_dssp TTEEEESCHHHHHHHHHHH-HTC--TTCC-HHHHHHHHHHTTTTTS
T ss_pred CCEEEecCHHHHHHHHHhc-CCC--CCcC-HHHHHHHHHHHHhcCc
Confidence 4444234679999999744 221 2335 9999999999998753
No 6
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=15.16 E-value=27 Score=22.66 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.6
Q ss_pred ceEEeecCchhhhhhHHHHHHhc
Q 014981 277 PFVTIYDNTEKFYRNVLAFERMH 299 (415)
Q Consensus 277 P~l~id~~T~~llrNLiA~Eq~~ 299 (415)
||+.+| -|-.+|||++-....-
T Consensus 1 PPiSlD-LTFhlLR~m~emar~e 22 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKAE 22 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHHG
T ss_pred CCcchh-HHHHHHHHHHHHHHHH
Confidence 677776 6789999998765543
No 7
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=15.00 E-value=2.5e+02 Score=23.97 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCce-ecC--------ChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCchh-hhh-hhhcccccccchHH
Q 014981 328 NGIV-GLG--------NSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPWH-SWK-ANLRQNYFNTPWAS 391 (415)
Q Consensus 328 ~gIi-~lg--------sdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~~-~~~-a~l~~~yf~npw~~ 391 (415)
.++| |.+ +.++||+++-.- |+- +.=+ |.++.+.+.-||++.-. +.. ..+..+|-.+|+..
T Consensus 22 ~~~I~Wt~~~geFklvdpe~VArLWG~r-Knk--p~Mn-YeKLSRALRyYY~k~Ii~KV~GqrlvYkF~~~p~~l 92 (157)
T 1hbx_G 22 KHMICWTSNDGQFKLLQAEEVARLWGIR-KNK--PNMN-YDKLSRALRYYYVKNIIKKVNGQKFVYKFVSYPEIL 92 (157)
T ss_dssp TTTEEECSSSSCEEETTHHHHHHHHHHG-GGC--TTCC-HHHHHHHHHHHHHTTSEEECSSCTTEEEESSTTGGG
T ss_pred CCceEEeCCCCEEEecCcHHHHHHHHhc-cCC--CCcC-HHHHHHHHHHHHhcCcEEecCCCeEEEeeCCCHHHh
Confidence 5677 544 679999999744 221 2335 99999999999987632 221 23555666677753
No 8
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=14.60 E-value=1.8e+02 Score=22.89 Aligned_cols=36 Identities=14% Similarity=0.159 Sum_probs=26.8
Q ss_pred CChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCch
Q 014981 334 GNSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSPW 373 (415)
Q Consensus 334 gsdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r~ 373 (415)
-+.++||+++-.- |+- +.=+ |.++.+.+.-||++.-
T Consensus 37 vd~e~VArlWG~r-K~k--p~Mn-YeklSRaLRyYY~k~i 72 (98)
T 1fli_A 37 TDPDEVARRWGER-KSK--PNMN-YDKLSRALRYYYDKNI 72 (98)
T ss_dssp CCHHHHHHHHHHH-TCC--TTCS-SHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHhc-cCC--CCcC-HHHHHHHHHHHHHcCc
Confidence 3679999999744 331 2335 9999999999998653
No 9
>3jtg_A ETS-related transcription factor ELF-3; ELF3, protein-DNA complex, type II TGF-beta receptor, activa alternative splicing, cytoplasm; HET: DNA; 2.20A {Mus musculus} SCOP: a.4.5.21
Probab=14.29 E-value=1.9e+02 Score=23.03 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=28.8
Q ss_pred CCceecCChHHHHHHHHhhhccCCCCCCcchHHHHHHHHhHhcCc
Q 014981 328 NGIVGLGNSERLSNFFLSLIKECPMGTRFGYTNLVEDLQSYCKSP 372 (415)
Q Consensus 328 ~gIi~lgsdeeva~lFn~L~~~~~~~~~~y~~~~~~~ln~y~~~r 372 (415)
+|++-+-+.++||+++-.- |+- +.-+ |.++.+.|.-||.+.
T Consensus 32 ~g~Fkl~dp~~VArlWG~r-Knk--p~Mn-YeKlSRaLRyYy~~~ 72 (103)
T 3jtg_A 32 EGVFKFLRSEAVAQLWGQK-KKN--SNMT-YEKLSRAMRYYYKRE 72 (103)
T ss_dssp TTEEEESSHHHHHHHHHHH-TTC--TTCC-HHHHHHHHHHHHHTT
T ss_pred CceEEecCHHHHHHHHHhc-cCC--CCcC-HHHHHHHHHHHHhcC
Confidence 3444233578999999764 332 2445 999999999999975
No 10
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=14.06 E-value=52 Score=23.92 Aligned_cols=14 Identities=14% Similarity=0.460 Sum_probs=10.5
Q ss_pred cCchHHHHHHHHHh
Q 014981 159 NQLPLFILNELFDL 172 (415)
Q Consensus 159 NQiPffVLe~L~~~ 172 (415)
++|||||=.++=.-
T Consensus 15 kkIP~FVR~kvrr~ 28 (63)
T 2kru_A 15 GKVPFFVRKKVRKN 28 (63)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 56999998776553
Done!