Query 014982
Match_columns 415
No_of_seqs 111 out of 221
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 04:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 98.9 3.6E-06 1.2E-10 82.9 33.7 274 27-389 25-330 (438)
2 1pw4_A Glycerol-3-phosphate tr 98.8 3.2E-06 1.1E-10 83.5 28.4 267 48-389 52-325 (451)
3 2gfp_A EMRD, multidrug resista 98.4 1.7E-05 6E-10 76.8 18.2 146 32-231 4-152 (375)
4 4aps_A DI-OR tripeptide H+ sym 97.9 0.0035 1.2E-07 62.7 25.1 147 29-231 14-174 (491)
5 2cfq_A Lactose permease; trans 97.9 0.0013 4.6E-08 65.2 20.5 72 28-103 7-83 (417)
6 1pw4_A Glycerol-3-phosphate tr 96.9 0.025 8.5E-07 55.3 16.6 175 28-253 252-434 (451)
7 2xut_A Proton/peptide symporte 96.7 0.026 8.9E-07 56.9 15.2 149 30-231 14-176 (524)
8 2cfq_A Lactose permease; trans 95.9 0.074 2.5E-06 52.5 12.9 46 187-232 331-378 (417)
9 3o7q_A L-fucose-proton symport 95.2 0.33 1.1E-05 47.1 14.6 146 29-231 259-409 (438)
10 4aps_A DI-OR tripeptide H+ sym 94.1 0.27 9.1E-06 48.9 10.9 43 186-228 404-446 (491)
11 4gc0_A D-xylose-proton symport 93.9 1.8 6E-05 42.7 16.3 110 69-227 320-429 (491)
12 2gfp_A EMRD, multidrug resista 80.3 2.1 7.4E-05 40.5 5.7 42 186-228 309-350 (375)
13 4gc0_A D-xylose-proton symport 80.2 45 0.0015 32.4 22.5 43 186-228 144-186 (491)
14 2xut_A Proton/peptide symporte 24.3 4.9E+02 0.017 25.1 18.6 64 328-391 120-185 (524)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.95 E-value=3.6e-06 Score=82.94 Aligned_cols=274 Identities=9% Similarity=-0.011 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhhcccC--cCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 014982 27 TSALLHSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (415)
Q Consensus 27 ~~~~l~~~l~~F~Il~~y~iLRpirDsl~vs~G--ae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~ 104 (415)
...++...+.+|+..+.+...-|+-..+.-..| .+++-++.........+..++.+++.+ |++|||.+......++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~~~~ 102 (438)
T 3o7q_A 25 IIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHHHHH
Confidence 345555566666666666666655444333333 445666666667788889999999999 9999999877666654
Q ss_pred HHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHH
Q 014982 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (415)
Q Consensus 105 ~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~ 184 (415)
+..+++... .... + .| .+. +..+...+..-.
T Consensus 103 ~~~~~~~~~-~~~~--------------------------~-------------~~-----~l~----~~~~l~G~~~~~ 133 (438)
T 3o7q_A 103 LGAALFWPA-AEIM--------------------------N-------------YT-----LFL----VGLFIIAAGLGC 133 (438)
T ss_dssp HHHHHHHHH-HHTT--------------------------C-------------HH-----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHhc-cccc--------------------------c-------------HH-----HHH----HHHHHHHhhHHH
Confidence 444433221 1110 0 12 111 122222332223
Q ss_pred HHHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH-HH-hH------------------------H--H-H
Q 014982 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y--L-L 235 (415)
Q Consensus 185 ~~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la-~~-g~------------------------~--L-l 235 (415)
.....-..++|.++.+|-.+..++..++.++|.++|+.+...+. .. +. + . +
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 213 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM 213 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHH
Confidence 33344567899999999999999999999999999998877765 22 11 2 2 2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHhhHHHHhhch
Q 014982 236 LFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFSSN 315 (415)
Q Consensus 236 lvaa~ll~la~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~g~~~I~~S~ 315 (415)
..+++.+. ....... ....+ . ++ + .. +++.+.+..++++.++++|
T Consensus 214 ~~~~~~~~-~~~~~~~--~~~p~----------~--~~--~--~~----------------~~~~~~~~~~~~~~~~~~~ 258 (438)
T 3o7q_A 214 IIVAIVLL-VALLIML--TKFPA----------L--QS--D--NH----------------SDAKQGSFSASLSRLARIR 258 (438)
T ss_dssp HHHHHHHH-HHHHHHH--CCCCC----------C--TT--T--CC----------------CCSSTTSHHHHHHHHTTCS
T ss_pred HHHHHHHH-HHHHHHH--HcCCc----------c--cc--c--cc----------------ccccccchhhhHHHHHhCh
Confidence 22222221 1111111 11100 0 00 0 00 0000124567788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcHHHHHHH
Q 014982 316 YLLSVSLFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYL 389 (415)
Q Consensus 316 YL~~Ia~~v~l~~v~~tlv~f~~~~~-v~~~~~d~~~~t~f~g~~~~~~~i~tl~~qlf~t~iirrlG~~~~l~~ 389 (415)
.+...++...++......+....... .++.+.-+++..... ....++..++..++...+.+|+|-+..+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 330 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY---LTGTMVCFFIGRFTGTWLISRFAPHKVLAA 330 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 99988888777776665554444455 556554333333333 333445555555554447899998887644
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.83 E-value=3.2e-06 Score=83.46 Aligned_cols=267 Identities=8% Similarity=-0.020 Sum_probs=146.5
Q ss_pred hhhhhhhhcccCcCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccchhh
Q 014982 48 LPLRDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLES 127 (415)
Q Consensus 48 RpirDsl~vs~Gae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~~~ll~F~~l~~~~~~~~~~~~~~ 127 (415)
-.+.+.+ .+.+++.++.....+...+..++.+++.+ |++|++++......+++..+++++......
T Consensus 52 ~~~~~~~---~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--------- 117 (451)
T 1pw4_A 52 PYLVEQG---FSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVMLFMGFVPWATS--------- 117 (451)
T ss_dssp HHTTSST---TCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHCHHHHS---------
T ss_pred HHHHHHh---ccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHHHHHHhhhhccc---------
Confidence 3344444 35667778777778888899999999999 999999877666555444433322111010
Q ss_pred hhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHH
Q 014982 128 VSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFG 207 (415)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~~~slFWsfandif~~~eAKRlyg 207 (415)
+ .| .+. +..+...+..-.........+.|.++.+|-.|.++
T Consensus 118 -----------------~-------------~~-----~l~----~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~ 158 (451)
T 1pw4_A 118 -----------------S-------------IA-----VMF----VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVS 158 (451)
T ss_dssp -----------------S-------------SS-----HHH----HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHH
T ss_pred -----------------c-------------HH-----HHH----HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHH
Confidence 0 12 111 22233333333344566688999999999999999
Q ss_pred HHHHHHhHHHHHhHHHHHHHH-HHh-H-H-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 014982 208 FIGAGATLGQLFGSLFAAGMA-FLG-P-Y-LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAP 283 (415)
Q Consensus 208 li~aGg~lG~I~Gg~l~~~la-~~g-~-~-Lllvaa~ll~la~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (415)
+..++.++|.++|+.++..+. ..| . + ..+.+++.+ ++..+.....+...+. ....+.++.+++.+
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-- 227 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAI-LVALFAFAMMRDTPQS--------CGLPPIEEYKNDYP-- 227 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHH-HHHHHHHHHCCCSSTT--------TCCCSCTTTCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHHHHhhccCCHhh--------cCCCChhhhccccc--
Confidence 999999999999999987765 555 3 2 333333222 2222222221111110 00000000000000
Q ss_pred CCCCCCCCCCcccccCcccchHhh-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 014982 284 AAKVPSPRSSTSIVKPHLWAILDG-LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIAMTVSSSLGRRRLLAEINSF 362 (415)
Q Consensus 284 ~~~~~~~~~~~~~~k~~~~~~~~g-~~~I~~S~YL~~Ia~~v~l~~v~~tlv~f~~~~~v~~~~~d~~~~t~f~g~~~~~ 362 (415)
. +. +++++.+.+..+. .+.++++|.+..+++...++......+..-.....++.+.-+.+. .|.+...
T Consensus 228 -----~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~ 296 (451)
T 1pw4_A 228 -----D-DY--NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK---SSWAYFL 296 (451)
T ss_dssp -------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH---HHHHHHH
T ss_pred -----c-cc--hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH---HHHHHHH
Confidence 0 00 0001111122222 467888999888888887777666665554445555544322222 3444555
Q ss_pred HHHHHHHHHHHHHHHHhHh--cHHHHHHH
Q 014982 363 IAVFILAGQLTLTYAACRL--GFAMFFYL 389 (415)
Q Consensus 363 ~~i~tl~~qlf~t~iirrl--G~~~~l~~ 389 (415)
.++..++..++...+.+|+ |-+..+.+
T Consensus 297 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~ 325 (451)
T 1pw4_A 297 YEYAGIPGTLLCGWMSDKVFRGNRGATGV 325 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHH
Confidence 5666666666655478898 88777644
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.36 E-value=1.7e-05 Score=76.75 Aligned_cols=146 Identities=10% Similarity=0.010 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccC--cCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 014982 32 HSSSCFFFILSAYFVVLPLRDEGAISLG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLV 109 (415)
Q Consensus 32 ~~~l~~F~Il~~y~iLRpirDsl~vs~G--ae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~~~ll~ 109 (415)
...+..|+...++...-|.-..+.-+.| .++..++.........+..++.+++.| |++|||.+........+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHHH
Confidence 3444555666666666666555444434 445666666778888899999999999 999999987666555444333
Q ss_pred HHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHHHHHHH
Q 014982 110 FFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISST 189 (415)
Q Consensus 110 F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~~~slF 189 (415)
..+. .+ .| .+. +..+...+..-......
T Consensus 82 ~~~~--~~-----------------------------------------~~-----~l~----~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 82 AVTT--SS-----------------------------------------LT-----VLI----AASAMQGMGTGVGGVMA 109 (375)
T ss_dssp HHHH--HH-----------------------------------------HH-----HHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHh--cc-----------------------------------------HH-----HHH----HHHHHHHHHHHhhhhhH
Confidence 3221 11 11 111 12222233333344466
Q ss_pred HHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH-HHh
Q 014982 190 WARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (415)
Q Consensus 190 Wsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la-~~g 231 (415)
...+.|.++.+|-.|.+++...+.++|.++|+.+...+. ..|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 110 RTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 677899999899899999999999999999999887765 445
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.92 E-value=0.0035 Score=62.70 Aligned_cols=147 Identities=10% Similarity=0.068 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-----hhh-----hhcccCcCchhhHHHHHHHHHHHHHHHHHHHhcCCC-CCchhHHH
Q 014982 29 ALLHSSSCFFFILSAYFVVLPL-----RDE-----GAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALV 97 (415)
Q Consensus 29 ~~l~~~l~~F~Il~~y~iLRpi-----rDs-----l~vs~Gae~LP~l~~~t~~~~ll~~~lys~L~~~~r-~sr~rl~~ 97 (415)
.+.......|+..++|+...+. .+. +.+ +.++..++.........+..++.+++.| | +.|++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~ 89 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVF 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHH
Confidence 3444444555555555544332 222 222 3445666666667888889999999999 9 89999886
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHH
Q 014982 98 LIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLW 177 (415)
Q Consensus 98 ~i~~fF~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw 177 (415)
.....+.+..+++ .... + .| .+. +..+.
T Consensus 90 ~~~~~~~~~~~~~----~~~~--------------------------~-------------~~-----~~~----~~~~l 117 (491)
T 4aps_A 90 WGGVLIMLGHIVL----ALPF--------------------------G-------------AS-----ALF----GSIIL 117 (491)
T ss_dssp HHHHHHHHHHHHH----HSCC--------------------------S-------------TT-----HHH----HHHHH
T ss_pred HHHHHHHHHHHHH----HHhh--------------------------h-------------HH-----HHH----HHHHH
Confidence 6554443222222 1110 0 12 111 12222
Q ss_pred HHHHHHHHHHHHHHHHHhhcCccchhH--HHHHHHHHHhHHHHHhHHHHHHHH-HHh
Q 014982 178 VALLNLITISSTWARVIDVMDSESGSR--LFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (415)
Q Consensus 178 ~~vfnl~~~slFWsfandif~~~eAKR--lygli~aGg~lG~I~Gg~l~~~la-~~g 231 (415)
..+..-.........++|.++.+|.+| .+++...+.++|.++|+.++..+. ..|
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 118 IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 333333445577788999999988555 688899999999999999988876 455
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.85 E-value=0.0013 Score=65.24 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh-----hhhhhcccCcCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 014982 28 SALLHSSSCFFFILSAYFVVLPL-----RDEGAISLGLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRF 102 (415)
Q Consensus 28 ~~~l~~~l~~F~Il~~y~iLRpi-----rDsl~vs~Gae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~f 102 (415)
+++.......|+..+++...-|. ++.+.+ ..++...+.........+..++.|+++| |+.|||.+......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITG 82 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHH
Confidence 34445555555555555554443 333333 3555667766778888899999999999 99999998765544
Q ss_pred H
Q 014982 103 F 103 (415)
Q Consensus 103 F 103 (415)
+
T Consensus 83 ~ 83 (417)
T 2cfq_A 83 M 83 (417)
T ss_dssp T
T ss_pred H
Confidence 4
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.95 E-value=0.025 Score=55.30 Aligned_cols=175 Identities=9% Similarity=-0.031 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhcc-cCc--CchhhHHHHHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHH
Q 014982 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGL--SKLPGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIHRF 102 (415)
Q Consensus 28 ~~~l~~~l~~F~Il~~y~iLRpirDsl~vs-~Ga--e~LP~l~~~t~~~~ll~~~lys~L~~~~r~--sr~rl~~~i~~f 102 (415)
+.++...+..|+....++.....--....+ .|. +...++........++..++.+++.+ |+ +|++.+......
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHHHH
Confidence 345555555666665555554433333333 333 33445555556677788889999999 98 777766543322
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHH
Q 014982 103 FSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLN 182 (415)
Q Consensus 103 F~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfn 182 (415)
.. ....+.....+ + .+ .| ... +.........
T Consensus 330 ~~----~~~~~~~~~~~----~-------------------~~-------------~~-----~~~----~~~~~~g~~~ 360 (451)
T 1pw4_A 330 LV----TIATIVYWMNP----A-------------------GN-------------PT-----VDM----ICMIVIGFLI 360 (451)
T ss_dssp HH----HHHHHHTTSCC----T-------------------TC-------------HH-----HHH----HHHHHHHHHH
T ss_pred HH----HHHHHHHHHhc----c-------------------cC-------------HH-----HHH----HHHHHHHHHH
Confidence 21 01111111100 0 00 12 111 1222222222
Q ss_pred HHHHHHHHHHHHhhcCccchhHHHHHHHHHHhH-HHHHhHHHHHHHH-HHhH-HHHHHHHHHHHHHHHHHHHHh
Q 014982 183 LITISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMA-FLGP-YLLLFAACLMELAAQSSKGIY 253 (415)
Q Consensus 183 l~~~slFWsfandif~~~eAKRlygli~aGg~l-G~I~Gg~l~~~la-~~g~-~Lllvaa~ll~la~~~~~~L~ 253 (415)
.......+..+.|.++.++.-+.+|+.+...++ |+.+|+.+...+. ..|. ....+.+++..++..+...+.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456688999999999999999999999999 9999999888776 4453 222222333334444444443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=96.74 E-value=0.026 Score=56.92 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcc-c--------CcCchhhHHHHHHHHHHHHHHHHHHHhcCCCC-CchhHHHHH
Q 014982 30 LLHSSSCFFFILSAYFVVLPLRDEGAIS-L--------GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVLI 99 (415)
Q Consensus 30 ~l~~~l~~F~Il~~y~iLRpirDsl~vs-~--------Gae~LP~l~~~t~~~~ll~~~lys~L~~~~r~-sr~rl~~~i 99 (415)
+....+..|+...+++...+.--..... . ..+...++.........+..++.+++.+ |+ +|+|.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~~ 91 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILWL 91 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHH
Confidence 3444555566666665444432222221 2 3445666666667778888999999999 99 999987654
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHH
Q 014982 100 HRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVA 179 (415)
Q Consensus 100 ~~fF~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~ 179 (415)
...+.+..++. ..... + .| .+. +..+...
T Consensus 92 ~~~~~~~~~~~----~~~~~-------------------------~-------------~~-----~~~----~~~~l~g 120 (524)
T 2xut_A 92 SLIYCVGHAFL----AIFEH-------------------------S-------------VQ-----GFY----TGLFLIA 120 (524)
T ss_dssp HHHHHHHHHHH----HHTSS-------------------------C-------------HH-----HHH----HHHHHHH
T ss_pred HHHHHHHHHHH----HHhcc-------------------------c-------------HH-----HHH----HHHHHHH
Confidence 44433322221 11100 0 11 110 1222223
Q ss_pred HHHHHHHHHHHHHHHhhcCccch---hHHHHHHHHHHhHHHHHhHHHHHHHH-HHh
Q 014982 180 LLNLITISSTWARVIDVMDSESG---SRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (415)
Q Consensus 180 vfnl~~~slFWsfandif~~~eA---KRlygli~aGg~lG~I~Gg~l~~~la-~~g 231 (415)
+..-.......+.++|.++.+|- ...|+....+.++|.++|+.++..+. ..|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 121 LGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC
T ss_pred HhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33233445667889999988774 34688899999999999998877765 345
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.91 E-value=0.074 Score=52.49 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=36.6
Q ss_pred HHHHHHHHhhcCccchhHHHHH-HHHHHhHHHHHhHHHHHHHH-HHhH
Q 014982 187 SSTWARVIDVMDSESGSRLFGF-IGAGATLGQLFGSLFAAGMA-FLGP 232 (415)
Q Consensus 187 slFWsfandif~~~eAKRlygl-i~aGg~lG~I~Gg~l~~~la-~~g~ 232 (415)
...|..++|.++.+..-+-+++ .+.+..+|+++|+.+...+. ..|.
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~ 378 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF 378 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc
Confidence 3568999999998877778998 48888899999998877665 4453
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=95.25 E-value=0.33 Score=47.09 Aligned_cols=146 Identities=11% Similarity=-0.002 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hcc-cC--cCchhhHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 014982 29 ALLHSSSCFFFILSAYFVVLPLRDEG-AIS-LG--LSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (415)
Q Consensus 29 ~~l~~~l~~F~Il~~y~iLRpirDsl-~vs-~G--ae~LP~l~~~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~ 104 (415)
++....+..|+....+...-..--.. ..+ .| .+...++.......+++..++.+++.+ |++|++.+........
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIAM 336 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH
Confidence 34444444455544443333222222 212 23 333344444556677788899999999 9999988765443332
Q ss_pred HHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccccccCCCCCCccccccccchhhhhHHHHHHHHHHHHH
Q 014982 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (415)
Q Consensus 105 ~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~ 184 (415)
+.++ ++.... + .| .. ..++........
T Consensus 337 ~~~~----~~~~~~-----~----------------------------------~~-----~~-----~~~~~~g~~~~~ 363 (438)
T 3o7q_A 337 ALCL----ISAFAG-----G----------------------------------HV-----GL-----IALTLCSAFMSI 363 (438)
T ss_dssp HHHH----HHHHCC-----H----------------------------------HH-----HH-----HHHHHHHHHHTT
T ss_pred HHHH----HHHHcC-----C----------------------------------cH-----HH-----HHHHHHHHHHHH
Confidence 2211 111111 0 11 00 111222223233
Q ss_pred HHHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH-HHh
Q 014982 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG 231 (415)
Q Consensus 185 ~~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la-~~g 231 (415)
.....++.+.|.++.+ .++-.++.. .+.+|+.+|+.+...+. ..|
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4457888888988855 556666655 56799999998887776 556
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=94.13 E-value=0.27 Score=48.87 Aligned_cols=43 Identities=5% Similarity=0.040 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH
Q 014982 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (415)
Q Consensus 186 ~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la 228 (415)
....+..++|.++.++.-+..|+.....++|..+|+.+...+.
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467889999999998899999999999999999998866554
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=93.86 E-value=1.8 Score=42.75 Aligned_cols=110 Identities=9% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhhhhccccccCCCccc
Q 014982 69 GSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAA 148 (415)
Q Consensus 69 ~t~~~~ll~~~lys~L~~~~r~sr~rl~~~i~~fF~~~ll~F~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (415)
......++..++.+.+.+ |+.|++..........+.++.+........ +
T Consensus 320 ~~~~~~~~~~~~~~~l~d--r~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--------------------------~--- 368 (491)
T 4gc0_A 320 IVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMFSLGTAFYTQA--------------------------P--- 368 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------------C---
T ss_pred HHHHHHHHHHHHHHHHHH--hhcCcchhccchHHHHHHHHHHHHHHhccc--------------------------c---
Confidence 345566777788889999 999999876555554444443333222211 0
Q ss_pred cccCCCCCCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHH
Q 014982 149 VDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (415)
Q Consensus 149 ~~~~~~~~~~~w~~~~W~y~~~~~~FYiw~~vfnl~~~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~l 227 (415)
.|. -. + ..++....++.-...+.|..++|+|+++---.-.|+..+.+.+|+++++.+...+
T Consensus 369 ----------~~~-----~~-~--~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 369 ----------GIV-----AL-L--SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp ----------HHH-----HH-H--HHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred ----------hHH-----HH-H--HHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 00 0 1222233333333457899999999988777778999999999999988765554
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=80.30 E-value=2.1 Score=40.52 Aligned_cols=42 Identities=7% Similarity=0.025 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH
Q 014982 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (415)
Q Consensus 186 ~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la 228 (415)
....+..++|.++ ++.-+.+|+.+..+++|..+|+.+...+.
T Consensus 309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~ 350 (375)
T 2gfp_A 309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLP 350 (375)
T ss_dssp SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466788899997 88889999999999999999988776665
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=80.18 E-value=45 Score=32.38 Aligned_cols=43 Identities=14% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCccchhHHHHHHHHHHhHHHHHhHHHHHHHH
Q 014982 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (415)
Q Consensus 186 ~slFWsfandif~~~eAKRlygli~aGg~lG~I~Gg~l~~~la 228 (415)
...-...++|..+.++-.|.-++...+...|.++++.+.....
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 3456677999999999999999999999999998887766554
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=24.32 E-value=4.9e+02 Score=25.14 Aligned_cols=64 Identities=13% Similarity=-0.033 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcHHHHHHHHH
Q 014982 328 AVVSSFFYFQKVTVIAMTVSSSLG--RRRLLAEINSFIAVFILAGQLTLTYAACRLGFAMFFYLMF 391 (415)
Q Consensus 328 ~v~~tlv~f~~~~~v~~~~~d~~~--~t~f~g~~~~~~~i~tl~~qlf~t~iirrlG~~~~l~~m~ 391 (415)
++......-.-...+.+.+|+++. ....+|......++-..+.......+....||+..+.+..
T Consensus 120 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 185 (524)
T 2xut_A 120 ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPG 185 (524)
T ss_dssp HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 333334444445667777765432 4677777887777776666555443677889999886643
Done!