BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014983
         (415 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
           Palustris
 pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
           Palustris
 pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
           Palustris
 pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
           Palustris
          Length = 503

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 25/100 (25%)

Query: 98  MCGEPLQFVLQVYAPIIEKESTFHRTLFLFMCPSMACLRRDQHEQWKRPPEKASRSVKVF 157
           + G P  +   + +P + KE+T H  LF+      A L  D H +W         S K  
Sbjct: 246 LXGVPTFYTRLLQSPRLTKETTGHXRLFI---SGSAPLLADTHREW---------SAKTG 293

Query: 158 RCQLPR----------SNPYYSSEPPKCNGTDKPSGPGVS 187
              L R          SNPY     P   G   P+ PGVS
Sbjct: 294 HAVLERYGXTETNXNTSNPYDGDRVPGAVG---PALPGVS 330


>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
           Enzyme Type 2 From Drosophila Melanogaster
          Length = 613

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 363 ILPQLLFYFGVSNDVDSLDWATMVVYTCESSCEANVSYKE 402
           ILP +LF     N++     A +V Y C  SCE N SY E
Sbjct: 214 ILPDILF-----NELKPKLIAPVVAYLCHESCEDNGSYIE 248


>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
           Adohcy
 pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
           Adohcy
          Length = 441

 Score = 28.9 bits (63), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 189 CNWCGTWK-GDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C +C T K G   C  C++A YC  + Q   W   HK+EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDW-PMHKLEC 90


>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
           Of Smyd2
 pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
           Of Smyd2
 pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
           Of Smyd2
 pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
           Of Smyd2
          Length = 433

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 189 CNWCGTWK-GDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C +C T K G   C  C++A YC  + Q   W   HK+EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDW-PMHKLEC 90


>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
 pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
          Length = 433

 Score = 28.5 bits (62), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 189 CNWCGTWK-GDKVCSSCRRAHYCQQKHQVTHWRSGHKVEC 227
           C +C T K G   C  C++A YC  + Q   W   HK+EC
Sbjct: 52  CEYCFTRKEGLSKCGRCKQAFYCNVECQKEDW-PMHKLEC 90


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,244,829
Number of Sequences: 62578
Number of extensions: 476296
Number of successful extensions: 863
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 19
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)