Query 014983
Match_columns 415
No_of_seqs 162 out of 417
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 04:35:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pv5_A Hypothetical protein YW 97.7 9.4E-05 3.2E-09 71.1 8.2 56 72-133 38-95 (264)
2 2odd_A Protein CBFA2T1; MYND z 97.3 4.4E-05 1.5E-09 57.6 1.0 44 185-230 16-59 (64)
3 2od1_A Protein CBFA2T1; zinc f 97.2 6.5E-05 2.2E-09 56.1 0.9 45 183-229 10-54 (60)
4 2d8q_A BLU protein, zinc finge 97.2 0.00013 4.5E-09 56.2 2.3 46 184-231 13-58 (70)
5 2dj8_A Protein CBFA2T1; zinc f 97.1 0.00013 4.5E-09 54.3 1.7 44 185-230 14-57 (60)
6 2jw6_A Deformed epidermal auto 96.8 0.00043 1.5E-08 49.8 1.8 41 186-228 9-49 (52)
7 3qwp_A SET and MYND domain-con 87.9 0.14 4.7E-06 52.0 1.1 47 185-232 46-93 (429)
8 3qww_A SET and MYND domain-con 86.0 0.18 6.2E-06 51.3 0.7 47 185-232 48-95 (433)
9 3n71_A Histone lysine methyltr 84.7 0.23 7.7E-06 51.4 0.7 47 185-232 48-95 (490)
10 1qyp_A RNA polymerase II; tran 64.1 6.7 0.00023 28.1 3.7 35 348-395 16-50 (57)
11 1tfi_A Transcriptional elongat 57.7 12 0.0004 26.4 3.9 35 348-395 10-44 (50)
12 1twf_I B12.6, DNA-directed RNA 32.9 32 0.0011 28.5 3.4 35 348-395 73-107 (122)
13 3a9j_C Mitogen-activated prote 28.4 21 0.00073 22.7 1.2 15 345-359 20-34 (34)
14 2j9u_B VPS36, vacuolar protein 23.6 16 0.00056 28.1 -0.1 20 345-364 38-57 (76)
15 3a43_A HYPD, hydrogenase nicke 22.1 36 0.0012 28.9 1.8 18 347-364 107-129 (139)
16 1pqv_S STP-alpha, transcriptio 22.1 58 0.002 31.3 3.5 35 348-395 269-303 (309)
17 2vje_A E3 ubiquitin-protein li 20.9 55 0.0019 23.4 2.4 18 95-112 47-64 (64)
No 1
>1pv5_A Hypothetical protein YWQG; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.75A {Bacillus subtilis} SCOP: d.251.1.1
Probab=97.66 E-value=9.4e-05 Score=71.11 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=42.0
Q ss_pred CCccccCCCCCCCCCCCCCCCccccCccCCCceeEEEEeec-CCCCC-CCcccEEEEEeCCCCc
Q 014983 72 FPSKAGGPPAWLDPINLPTGRSCLCDMCGEPLQFVLQVYAP-IIEKE-STFHRTLFLFMCPSMA 133 (415)
Q Consensus 72 fpSKiGG~P~WL~p~~lP~~~~l~C~~C~~pm~fLlQvYAP-l~~~~-~~fhRtLYVF~C~~~~ 133 (415)
..||+||.|.|......| +| .+|+||.||+|||++ |...+ -+-...|++|+|..-.
T Consensus 38 ~~Sk~GG~p~lp~~~~~P-----~~-~~g~pl~~laQi~~~~lp~~~~lp~~g~L~ff~~~~d~ 95 (264)
T 1pv5_A 38 YDSKIAGDPYFPKHETYP-----TD-ENGQPMKLLAQINFSHIPQLDGYPSSGILQFYISVHDD 95 (264)
T ss_dssp TSCEESSCCCCBTTSCCC-----BC-TTSCBCEEEEEEEGGGSCCCTTSCSSCEEEEEECSSSS
T ss_pred CccccCCccCCCCCCCCC-----cC-CCCCceEEEEEEccccCcccCCCCCCCEEEEEEecCcc
Confidence 479999999998766555 45 589999999999996 22111 2357899999996543
No 2
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=97.35 E-value=4.4e-05 Score=57.64 Aligned_cols=44 Identities=34% Similarity=0.729 Sum_probs=38.1
Q ss_pred CCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhh
Q 014983 185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL 230 (415)
Q Consensus 185 ~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~ 230 (415)
....|..||. .+.+.|++|+.+.||++.+|..||+ .||..|...
T Consensus 16 ~~~~C~~C~~-~~~~~Cs~C~~~~YCs~~CQ~~~W~-~Hk~~C~~~ 59 (64)
T 2odd_A 16 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICGQT 59 (64)
T ss_dssp CSSSCTTTSS-CCCEEETTTSCCEESSHHHHHHHHH-HHTTTTTSS
T ss_pred CCCcCccccC-CCcccCCCCCChhhCCHHHHHHHHH-HHhHHHhcc
Confidence 3468999998 5678899999999999999999999 699999643
No 3
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=97.24 E-value=6.5e-05 Score=56.08 Aligned_cols=45 Identities=33% Similarity=0.720 Sum_probs=38.3
Q ss_pred CCCCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhh
Q 014983 183 GPGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQ 229 (415)
Q Consensus 183 ~~~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~ 229 (415)
......|..||. .+.+.|++|+.+.||++.+|..||+ .||..|..
T Consensus 10 ~~~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~dW~-~Hk~~C~~ 54 (60)
T 2od1_A 10 SDSSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 54 (60)
T ss_dssp -CCSSCCTTTSS-CCCEECTTTSCCEESSHHHHHHHHH-HHTTTSSC
T ss_pred CCCCCccccCCC-cccccCCCCCCeeecCHHHHHHHHH-HHhHHHcc
Confidence 345568999998 5678899999999999999999999 69998864
No 4
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Probab=97.21 E-value=0.00013 Score=56.23 Aligned_cols=46 Identities=33% Similarity=0.836 Sum_probs=39.5
Q ss_pred CCCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhhc
Q 014983 184 PGVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLN 231 (415)
Q Consensus 184 ~~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~ 231 (415)
.....|..|+. .+.+.|++|+.+.||++.+|..||+. ||..|....
T Consensus 13 ~~~~~C~~C~~-~~~~~Cs~Ck~v~YCs~eCQ~~~W~~-HK~~C~~~~ 58 (70)
T 2d8q_A 13 PERPRCAYCSA-EASKRCSRCQNEWYCCRECQVKHWEK-HGKTCVLAA 58 (70)
T ss_dssp CCCCBCSSSCC-BCCCBCTTTSCCBCSCHHHHHHTHHH-HHHHCCCCC
T ss_pred CCCCcCCCCCC-cccccCCCCCCEeeCCHHHhHHHHHH-HHHHHHHHH
Confidence 34568999998 46788999999999999999999998 999997543
No 5
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=97.14 E-value=0.00013 Score=54.34 Aligned_cols=44 Identities=32% Similarity=0.702 Sum_probs=37.7
Q ss_pred CCCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhhhh
Q 014983 185 GVSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQL 230 (415)
Q Consensus 185 ~~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~ 230 (415)
....|..|+. .+.+.|++|+.+.||++.+|..||+ .||..|...
T Consensus 14 ~~~~C~~C~~-~~~~~Cs~C~~v~YCs~~CQ~~~W~-~Hk~~C~~~ 57 (60)
T 2dj8_A 14 SSESCWNCGR-KASETCSGCNTARYCGSFCQHKDWE-KHHHICSGP 57 (60)
T ss_dssp CSCCCSSSCS-CCCEECTTTSCCEESSHHHHHHTHH-HHTTTSCCS
T ss_pred CCcccccCCC-CCcccCCCCCCEeeeCHHHHHHHHH-HHHHHHHhc
Confidence 4468999998 5678899999999999999999999 599988643
No 6
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=96.79 E-value=0.00043 Score=49.78 Aligned_cols=41 Identities=27% Similarity=0.756 Sum_probs=34.8
Q ss_pred CCcccccCCCCCCCcCCcccccccchhhhhcccccccchhhhh
Q 014983 186 VSLCNWCGTWKGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQ 228 (415)
Q Consensus 186 ~~~c~~cg~w~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~ 228 (415)
...|..||. .+.+.|++|+.+.||++.+|..||+. ||..|.
T Consensus 9 ~~~C~~C~~-~~~~~C~~C~~~~YCs~~CQ~~~W~~-Hk~~C~ 49 (52)
T 2jw6_A 9 EQSCVNCGR-EAMSECTGCHKVNYCSTFCQRKDWKD-HQHICG 49 (52)
T ss_dssp --CCSSSSS-SCSEECTTTCSSEESSHHHHHHHTTT-GGGTTT
T ss_pred CCcCCCCCC-CCcCcCCCCCCEeecCHHHHHHHHHH-HCHHHc
Confidence 357888987 46788999999999999999999995 999885
No 7
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=87.91 E-value=0.14 Score=52.01 Aligned_cols=47 Identities=36% Similarity=0.661 Sum_probs=38.0
Q ss_pred CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983 185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL 232 (415)
Q Consensus 185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~ 232 (415)
....|..|+.. .....|++|+.+.|||+..|..+|+ .||..|.....
T Consensus 46 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~ 93 (429)
T 3qwp_A 46 RGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWP-DHKRECKCLKS 93 (429)
T ss_dssp BTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHH-HHHHHHHHHHH
T ss_pred CCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhh-hhHHhhhhHHh
Confidence 34578888853 2446699999999999999999998 79999976543
No 8
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.02 E-value=0.18 Score=51.30 Aligned_cols=47 Identities=30% Similarity=0.709 Sum_probs=38.0
Q ss_pred CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983 185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL 232 (415)
Q Consensus 185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~ 232 (415)
....|..|+.- .....|++|+.+.|||+..|..+|. .||..|.....
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~l~~ 95 (433)
T 3qww_A 48 RGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWP-LHKLECSSMVV 95 (433)
T ss_dssp TTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHH-HHTTTHHHHHH
T ss_pred cCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhh-HHHHHHHHHHH
Confidence 44678888852 3456799999999999999999995 89999976543
No 9
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.66 E-value=0.23 Score=51.43 Aligned_cols=47 Identities=30% Similarity=0.630 Sum_probs=37.7
Q ss_pred CCCcccccCCC-CCCCcCCcccccccchhhhhcccccccchhhhhhhcc
Q 014983 185 GVSLCNWCGTW-KGDKVCSSCRRAHYCQQKHQVTHWRSGHKVECQQLNL 232 (415)
Q Consensus 185 ~~~~c~~cg~w-~~~~~cs~c~~~~ycs~~hq~~~~~~ghk~~c~~~~~ 232 (415)
....|..|+.. .....|+.|+.+.|||+..|..+|+ .||..|.....
T Consensus 48 ~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~-~Hk~eC~~~~~ 95 (490)
T 3n71_A 48 INFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWL-NHKNECAAIKK 95 (490)
T ss_dssp TTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHH-HHHHHHHHHHH
T ss_pred cCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhh-HHHHHhHHHHh
Confidence 45678888642 3456799999999999999999998 79999975543
No 10
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=64.12 E-value=6.7 Score=28.10 Aligned_cols=35 Identities=17% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCCCCCCCceeeEeechhhhhhcccCCCCCcceeeEEEEEecCCCCC
Q 014983 348 PKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCE 395 (415)
Q Consensus 348 P~C~~CG~~R~FEfQlmP~ll~~L~~~~~~~~ldwGTi~VYTCs~sC~ 395 (415)
-+|+.||..+.+=||+.-- ..++ +..++|+|.+ |.
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~r------sade------p~T~fy~C~~-Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTR------AGDE------PSTIFYKCTK-CG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCS------SSSC------SSEEEEEESS-SC
T ss_pred eECCCCCCCEEEEEEeecc------cCCC------CCcEEEEcCC-CC
Confidence 3599999998887776532 1222 3347899975 85
No 11
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=57.72 E-value=12 Score=26.40 Aligned_cols=35 Identities=17% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCCCCCCCceeeEeechhhhhhcccCCCCCcceeeEEEEEecCCCCC
Q 014983 348 PKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCE 395 (415)
Q Consensus 348 P~C~~CG~~R~FEfQlmP~ll~~L~~~~~~~~ldwGTi~VYTCs~sC~ 395 (415)
-.|+.||..+.+=||+.. ...++ +..+.|+|.+ |.
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~------RsaDE------~mT~Fy~C~~-Cg 44 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQT------RSADE------PMTTFVVCNE-CG 44 (50)
T ss_dssp SCCSSSCSSCEEEEEECS------SSSSS------CCEEEEEESS-SC
T ss_pred cCCCCCCCCEEEEEEecC------cCCCC------CceEEEEcCC-CC
Confidence 479999999998888532 22222 5567999965 74
No 12
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=32.92 E-value=32 Score=28.52 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=24.5
Q ss_pred CCCCCCCCCceeeEeechhhhhhcccCCCCCcceeeEEEEEecCCCCC
Q 014983 348 PKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCE 395 (415)
Q Consensus 348 P~C~~CG~~R~FEfQlmP~ll~~L~~~~~~~~ldwGTi~VYTCs~sC~ 395 (415)
-.|+.||..+.+=||+. +...++ +..+.|+|.+ |.
T Consensus 73 ~~Cp~C~~~~a~~~q~q------~rsade------~~t~fy~C~~-C~ 107 (122)
T 1twf_I 73 RECPKCHSRENVFFQSQ------QRRKDT------SMVLFFVCLS-CS 107 (122)
T ss_dssp CCCTTTCCCCEEEEECS------SCCTTC------CCCEEEEETT-TC
T ss_pred CCCCCCCCCEEEEEEec------CccCCC------CceEEEEeCC-CC
Confidence 46999999998877765 222222 4467999975 85
No 13
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=28.38 E-value=21 Score=22.67 Aligned_cols=15 Identities=33% Similarity=0.846 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCcee
Q 014983 345 ADIPKCSYCGGPRCF 359 (415)
Q Consensus 345 ~~iP~C~~CG~~R~F 359 (415)
...+.|..|+.+|-|
T Consensus 20 ~~~~~Ce~C~~~r~~ 34 (34)
T 3a9j_C 20 PALIRCEQCEMPRHF 34 (34)
T ss_dssp TTCSBCTTTCCBSCC
T ss_pred CCCCeeCCCCCcCcC
Confidence 357999999999976
No 14
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=23.60 E-value=16 Score=28.08 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCceeeEeec
Q 014983 345 ADIPKCSYCGGPRCFEFQIL 364 (415)
Q Consensus 345 ~~iP~C~~CG~~R~FEfQlm 364 (415)
..+|+|..||.++.|++=+-
T Consensus 38 ~~lPpC~aCGIkP~~~~i~~ 57 (76)
T 2j9u_B 38 LPTPICINCGVPADYELTKS 57 (76)
T ss_dssp SSCCBCTTTCCBCCHHHHGG
T ss_pred CCCCcccccCccCCHHHHHH
Confidence 46899999999999887544
No 15
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=22.11 E-value=36 Score=28.86 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=13.6
Q ss_pred CCCCCCCCCCcee-----eEeec
Q 014983 347 IPKCSYCGGPRCF-----EFQIL 364 (415)
Q Consensus 347 iP~C~~CG~~R~F-----EfQlm 364 (415)
.-.|+.||+++.. ||+|+
T Consensus 107 ~~~CP~Cgs~~~~i~~G~el~I~ 129 (139)
T 3a43_A 107 FLACPKCGSHDFEVVKGRGVYVA 129 (139)
T ss_dssp GCSCSSSSCCCEEEEESSCEEEE
T ss_pred CCcCccccCCccEEecCCeEEEE
Confidence 3579999999875 66654
No 16
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=22.06 E-value=58 Score=31.35 Aligned_cols=35 Identities=20% Similarity=0.504 Sum_probs=24.2
Q ss_pred CCCCCCCCCceeeEeechhhhhhcccCCCCCcceeeEEEEEecCCCCC
Q 014983 348 PKCSYCGGPRCFEFQILPQLLFYFGVSNDVDSLDWATMVVYTCESSCE 395 (415)
Q Consensus 348 P~C~~CG~~R~FEfQlmP~ll~~L~~~~~~~~ldwGTi~VYTCs~sC~ 395 (415)
-.|+.||..+++=||+.. ...++ |.-+.|+|.+ |.
T Consensus 269 ~~C~~C~~~~~~~~q~Q~------rsaDe------~~t~f~~C~~-Cg 303 (309)
T 1pqv_S 269 FTCGKCKEKKVSYYQLQT------RSADE------PLTTFCTCEA-CG 303 (309)
T ss_pred ccCCCCCCCeeEEEEeec------ccCCC------CCcEEEEeCC-CC
Confidence 479999999987777532 22222 5567999965 85
No 17
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=20.90 E-value=55 Score=23.41 Aligned_cols=18 Identities=33% Similarity=0.988 Sum_probs=16.0
Q ss_pred ccCccCCCceeEEEEeec
Q 014983 95 LCDMCGEPLQFVLQVYAP 112 (415)
Q Consensus 95 ~C~~C~~pm~fLlQvYAP 112 (415)
.|+.|.++..-++++|-|
T Consensus 47 ~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 47 PCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp CCTTTCCCCCEEEEEECC
T ss_pred cCCCcCcchhceEeeecC
Confidence 699999999999999964
Done!