BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014987
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 146/309 (47%), Gaps = 47/309 (15%)
Query: 100 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 159
QAG + ++ AAE+AA+ D VL++GL+ E E DR + LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRA 609
Query: 160 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 219
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 220 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 272
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 273 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 331
+S FK ++ + I ++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FK---VTDDKIAIS-------------VDVKNTGDKFAGS 753
Query: 332 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 389
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 390 MGEHSLHIG 398
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 145/309 (46%), Gaps = 47/309 (15%)
Query: 100 QAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 159
QAG + ++ AAE+AA+ D VL++GL+ E E DR LP R ELV
Sbjct: 551 QAGVIKAIDDDEEIRNAAELAAKH-DKAVLIIGLNGEWETEGYDRENXDLPKRTNELVRA 609
Query: 160 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGK 219
V KA+ V+ V G PV+ + ++ A++ Y G G AIADVL+G P GK
Sbjct: 610 VLKANPNTVI-VNQSGTPVEFPWLED---ANALVQAWYGGNELGNAIADVLYGDVVPNGK 665
Query: 220 LPMTWYPQDYVSRLPMTDMRMRAARGYPGRT----YRFYKG---PVVFPFGHGMSYTTFA 272
L ++W P + + R G YR+Y+ V FPFG+G+SYTTF
Sbjct: 666 LSLSW-PFKLQDNPAFLNFKTEFGRVIYGEDIFVGYRYYEKLQRKVAFPFGYGLSYTTFE 724
Query: 273 HTLSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGD-MAGT 331
+S FK T +D +++ VD+KNTGD AG+
Sbjct: 725 LDISD---------------FKVT--------------DDKIAIS--VDVKNTGDKFAGS 753
Query: 332 HTLLVFAKPPAGNWS-PNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV-DKFGIRRIP 389
+ V+ S P K+L GF+KVH+ G ++V +D+ + +S ++ G +
Sbjct: 754 EVVQVYFSALNSKVSRPVKELKGFEKVHLEPGEKKTVNIDLELKDAISYFNEELGKWHVE 813
Query: 390 MGEHSLHIG 398
GE+ + +G
Sbjct: 814 AGEYLVSVG 822
>pdb|3ZYZ|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution.
pdb|3ZZ1|A Chain A, Crystal Structure Of A Glycoside Hydrolase Family 3
Beta-Glucosidase, Bgl1 From Hypocrea Jecorina At 2.1a
Resolution
Length = 713
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 171/410 (41%), Gaps = 65/410 (15%)
Query: 39 GIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVAC 82
GIVLLKN A LPL + ++AV+G + +IGN+A G+
Sbjct: 330 GIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGW 382
Query: 83 G--------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLD 134
G + P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 383 GSGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITAD 438
Query: 135 Q-----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRI 189
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 439 SGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQV 497
Query: 190 GAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYP 247
A++W G P Q G A+ DVL+G +P GKL T P DY +R+ ++ + G
Sbjct: 498 KAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRI-VSGGSDSFSEGL- 555
Query: 248 GRTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAI 303
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N
Sbjct: 556 FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVA 615
Query: 304 RVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAG 362
V VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 616 TVT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPG 662
Query: 363 ALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 411
+ +I + LS D + +P G + +G I L + L
Sbjct: 663 QSGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 711
>pdb|4I8D|A Chain A, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
pdb|4I8D|B Chain B, Crystal Structure Of Beta-D-Glucoside Glucohydrolase From
Trichoderma Reesei
Length = 714
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 108/410 (26%), Positives = 171/410 (41%), Gaps = 65/410 (15%)
Query: 39 GIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA----------------GVAC 82
GIVLLKN A LPL + ++AV+G + +IGN+A G+
Sbjct: 331 GIVLLKNDANILPLK--KPASIAVVG-----SAAIIGNHARNSPSCNDKGCDDGALGMGW 383
Query: 83 G--------YTTPLQGISRYAKTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLD 134
G + P I+ A + Q ++ N GA+ AAR D ++ + D
Sbjct: 384 GSGAVNYPYFVAPYDAINTRASS--QGTQVTLSNTDNTSSGAS--AARGKDVAIVFITAD 439
Query: 135 Q-----SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRI 189
++E DR L LV VA A+ V++V+ G + + P++
Sbjct: 440 SGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSN-VIVVVHSVGAIILEQILALPQV 498
Query: 190 GAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTW--YPQDYVSRLPMTDMRMRAARGYP 247
A++W G P Q G A+ DVL+G +P GKL T P DY +R+ ++ + G
Sbjct: 499 KAVVWAGLPSQESGNALVDVLWGDVSPSGKLVYTIAKSPNDYNTRI-VSGGSDSFSEGL- 556
Query: 248 GRTYRFYKGPVVFP---FGHGMSYTTFAHT-LSKAPNQFSVPIATSLYAFKNTTISSNAI 303
Y+ + + P FG+G+SYT F ++ LS S P ++ + + N
Sbjct: 557 FIDYKHFDDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVPGGPSDLFQNVA 616
Query: 304 RVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL-LVFAKPPAGNWSPNKQLIGFKKVHVTAG 362
V VDI N+G + G L P + +P KQL GF K+++T G
Sbjct: 617 TVT-------------VDIANSGQVTGAEVAQLYITYPSSAPRTPPKQLRGFAKLNLTPG 663
Query: 363 ALQSVRLDIHVCKHLSVVDKFGIRR-IPMGEHSLHIGDLKHSISLQANLE 411
+ +I + LS D + +P G + +G I L + L
Sbjct: 664 QSGTATFNIR-RRDLSYWDTASQKWVVPSGSFGISVGASSRDIRLTSTLS 712
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 123/273 (45%), Gaps = 68/273 (24%)
Query: 120 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 179
+AR+A T +V D E +DR L LPG Q +L+S VA A+ +V VL G V
Sbjct: 562 SARKAR-TAVVFAYDDGTEG--VDRPNLSLPGTQDKLISAVADANPNTIV-VLNTGSSVL 617
Query: 180 VSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYP----QDYVSRLPM 235
+ + + A+L + YPGQAG A A +L+G NP GKL + +P Q V+ P
Sbjct: 618 MPWLS---KTRAVLDMWYPGQAGAEATAALLYGDVNPSGKLTQS-FPAAENQHAVAGDPT 673
Query: 236 TDMRMRAARGYPG----RTYR---------FYKGPV--VFPFGHGMSYTTFAHTLSKAPN 280
+ YPG +TYR F K V +FPFGHG+SYT+F +
Sbjct: 674 S---------YPGVDNQQTYREGIHVGYRWFDKENVKPLFPFGHGLSYTSFTQS------ 718
Query: 281 QFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVF--A 338
A V T+ L + V ++N+G AG + + A
Sbjct: 719 ---------------------APTVVRTSTG---GLKVTVTVRNSGKRAGQEVVQAYLGA 754
Query: 339 KPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDI 371
P K+L+G+ KV + AG ++V +++
Sbjct: 755 SPNVTAPQAKKKLVGYTKVSLAAGEAKTVTVNV 787
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 39 GIVLLKNSARTLPLSTLRHHTVAVIGPNS-DVTVTMIGNYAGVACGYTTPLQGISRYA 95
G VLL+N + LPL+ ++AVIGP + D VT +G+ V PL I A
Sbjct: 373 GAVLLRNEGQALPLAGDAGKSIAVIGPTAVDPKVTGLGSAHVVPDSAAAPLDTIKARA 430
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 131/318 (41%), Gaps = 76/318 (23%)
Query: 121 ARQADATVLVMGLDQSIEAEFIDRA----GLLLPGRQQELVSRVAKA--SRGPVVLVLM- 173
A++ D V+V+ I E DR L + +L+ V++ +G V+VL+
Sbjct: 442 AKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498
Query: 174 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 233
G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +
Sbjct: 499 IGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDV 554
Query: 234 PMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHT 274
P + +PG YR+Y V P FG+G+SYTTF
Sbjct: 555 P--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-- 604
Query: 275 LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL 334
Y+ N + +RV + I+NTG AG
Sbjct: 605 ----------------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVS 635
Query: 335 LVFAKPPAGNWS-PNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 392
V+ K P G P ++L F K + G + V L+I V S + + + GE
Sbjct: 636 QVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGE 693
Query: 393 HSLHIGDLKHSISLQANL 410
+ + +G +I L+
Sbjct: 694 YEVRVGASSRNIKLKGTF 711
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 87/318 (27%), Positives = 131/318 (41%), Gaps = 76/318 (23%)
Query: 121 ARQADATVLVMGLDQSIEAEFIDRA----GLLLPGRQQELVSRVAKA--SRGPVVLVLM- 173
A++ D V+V+ I E DR L + +L+ V++ +G V+VL+
Sbjct: 442 AKKNDVAVIVIS---RISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498
Query: 174 CGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRL 233
G PV+V ++ + IL V GQ G +ADVL GR NP GKLP T +P+DY S +
Sbjct: 499 IGSPVEVVSWRD--LVDGILLVWQAGQETGRIVADVLTGRINPSGKLPTT-FPRDY-SDV 554
Query: 234 PMTDMRMRAARGYPGRT----------------YRFYKGPVVFP---FGHGMSYTTFAHT 274
P + +PG YR+Y V P FG+G+SYTTF
Sbjct: 555 P--------SWTFPGEPKDNPQKVVYEEDIYVGYRYYDTFGVEPAYEFGYGLSYTTFE-- 604
Query: 275 LSKAPNQFSVPIATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTL 334
Y+ N + +RV + I+NTG AG
Sbjct: 605 ----------------YSDLNVSFDGETLRVQYR-------------IENTGGRAGKEVS 635
Query: 335 LVFAKPPAGNWS-PNKQLIGFKKVH-VTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 392
V+ K P G P ++L F K + G + V L+I V S + + + GE
Sbjct: 636 QVYIKAPKGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGEEWV--VEAGE 693
Query: 393 HSLHIGDLKHSISLQANL 410
+ + +G +I L+
Sbjct: 694 YEVRVGASSRNIKLKGTF 711
>pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
4i,4iii,4v-S-Trithiocellohexaose
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With
2-Deoxy-2-Fluoro-Alpha-D-Glucoside
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl
3i-Thiolaminaritrioside
Length = 605
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 171 VLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQD 228
VL+ G PV V A +D + A L PG G + D LFG G+LP TW+
Sbjct: 521 VLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRLPRTWFKS- 574
Query: 229 YVSRLPM 235
V +LPM
Sbjct: 575 -VDQLPM 580
>pdb|1LQ2|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X38|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
pdb|1X39|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Gluco-Phenylimidazole
Length = 602
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 171 VLMCGGPVDVS--FAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQD 228
VL+ G PV V A +D + A L PG G + D LFG G+LP TW+
Sbjct: 521 VLISGRPVVVQPLLAASDALVAAWL----PGSEG-QGVTDALFGDFGFTGRLPRTWFKS- 574
Query: 229 YVSRLPM 235
V +LPM
Sbjct: 575 -VDQLPM 580
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 98/271 (36%), Gaps = 35/271 (12%)
Query: 1 MRLGMF-DGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHT 59
+R G+F +PSA+P P+ + +VLLKN+ LP+
Sbjct: 359 IRWGVFTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRIL 417
Query: 60 VAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLI 114
VA G N+ I AG G++ QG A G I
Sbjct: 418 VAGKGANA------INMQAG---GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKI 468
Query: 115 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVV 169
+E + V ++ + + AE+ LL Q E +A KA PVV
Sbjct: 469 TLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELL--EFQHETKHALALLKQLKADNIPVV 526
Query: 170 LVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRA------NPGGKLPMT 223
V + G P+ V+ N W+ PG + G +ADVL + GKL +
Sbjct: 527 TVFLSGRPLWVNKELNASDAFVAAWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFS 583
Query: 224 W--YPQDYVSRLPMTDMRMRAARGYPGRTYR 252
W Y + L D A GY G TY+
Sbjct: 584 WPKYDDQFTLNLNDADYDPLFAYGY-GLTYQ 613
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 98/271 (36%), Gaps = 35/271 (12%)
Query: 1 MRLGMF-DGEPSAQPFGNLGPRDVCTPXXXXXXXXXXXXGIVLLKNSARTLPLSTLRHHT 59
+R G+F +PSA+P P+ + +VLLKN+ LP+
Sbjct: 359 IRWGVFTKSKPSARPESQ-HPQWLGAAEHRTLAREAVRKSLVLLKNNESILPIKASSRIL 417
Query: 60 VAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAKTIHQA-----GCFGVACNGNQLI 114
VA G N+ I AG G++ QG A G I
Sbjct: 418 VAGKGANA------INMQAG---GWSVSWQGTDNTNSDFPNATSIFSGLQSQVTKAGGKI 468
Query: 115 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVV 169
+E + V ++ + + AE+ LL Q E +A KA PVV
Sbjct: 469 TLSESGEYTSKPDVAIVVIGEEPYAEWFGDIELL--EFQHETKHALALLKQLKADNIPVV 526
Query: 170 LVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRA------NPGGKLPMT 223
V + G P+ V+ N W+ PG + G +ADVL + GKL +
Sbjct: 527 TVFLSGRPLWVNKELNASDAFVAAWL--PG-SEGEGVADVLLTNKQGKTQFDFTGKLSFS 583
Query: 224 W--YPQDYVSRLPMTDMRMRAARGYPGRTYR 252
W Y + L D A GY G TY+
Sbjct: 584 WPKYDDQFTLNLNDADYDPLFAYGY-GLTYQ 613
>pdb|3EOJ|A Chain A, Fmo Protein From Prosthecochloris Aestuarii 2k At 1.3a
Resolution
Length = 366
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 364 LQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSISLQANL 410
+ SV+ ++V + + ++ RRI +GE SL +GD HS S + ++
Sbjct: 74 VDSVKNTLNV--EVDIANETKDRRIAVGEGSLSVGDFSHSFSFEGSV 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,532,550
Number of Sequences: 62578
Number of extensions: 513116
Number of successful extensions: 1041
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 17
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)