Query 014987
Match_columns 415
No_of_seqs 204 out of 1510
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 02:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014987.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014987hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03080 Probable beta-xylosid 100.0 5.7E-86 1.2E-90 712.2 38.2 406 1-408 364-779 (779)
2 PRK15098 beta-D-glucoside gluc 100.0 6.6E-78 1.4E-82 651.2 36.9 369 1-405 354-758 (765)
3 PF01915 Glyco_hydro_3_C: Glyc 100.0 3.2E-41 7E-46 317.5 13.0 217 40-270 1-227 (227)
4 PF14310 Fn3-like: Fibronectin 99.8 2.3E-21 5E-26 149.1 7.5 69 332-401 1-71 (71)
5 COG1472 BglX Beta-glucosidase- 97.5 3.9E-05 8.4E-10 78.0 1.8 60 1-78 313-372 (397)
6 PF07705 CARDB: CARDB; InterP 96.9 0.0054 1.2E-07 49.2 7.9 61 315-398 20-82 (101)
7 PF12690 BsuPI: Intracellular 96.2 0.051 1.1E-06 42.7 9.0 70 316-397 2-82 (82)
8 PF10633 NPCBM_assoc: NPCBM-as 95.7 0.064 1.4E-06 41.5 7.9 67 315-397 6-73 (78)
9 PRK13202 ureB urease subunit b 92.7 0.28 6E-06 39.9 5.3 50 317-370 22-83 (104)
10 PRK13203 ureB urease subunit b 92.3 0.3 6.6E-06 39.5 5.0 51 316-370 20-82 (102)
11 PF14874 PapD-like: Flagellar- 91.5 1.5 3.3E-05 35.3 8.6 60 315-380 21-80 (102)
12 cd00407 Urease_beta Urease bet 91.2 0.5 1.1E-05 38.3 5.2 51 316-370 20-82 (101)
13 TIGR00192 urease_beta urease, 90.3 0.64 1.4E-05 37.6 5.1 51 316-370 20-82 (101)
14 PRK13205 ureB urease subunit b 89.8 0.67 1.5E-05 40.2 5.1 51 316-370 20-82 (162)
15 PRK13204 ureB urease subunit b 89.5 0.73 1.6E-05 40.1 5.1 51 316-370 43-105 (159)
16 COG1470 Predicted membrane pro 89.5 1.4 3E-05 45.2 7.9 73 315-401 285-360 (513)
17 PRK13201 ureB urease subunit b 88.2 1 2.3E-05 38.2 5.1 51 316-370 20-82 (136)
18 PF00699 Urease_beta: Urease b 88.2 1.8 3.9E-05 35.0 6.2 51 316-370 19-81 (100)
19 PRK13198 ureB urease subunit b 86.5 1.4 3E-05 38.3 5.0 51 316-370 48-110 (158)
20 PF07610 DUF1573: Protein of u 85.2 2.3 5E-05 29.2 4.8 43 319-370 1-44 (45)
21 PF00345 PapD_N: Pili and flag 84.7 5.6 0.00012 33.2 8.0 54 317-373 17-73 (122)
22 PF13473 Cupredoxin_1: Cupredo 84.5 4.9 0.00011 32.6 7.3 52 317-400 44-95 (104)
23 PRK13986 urease subunit alpha; 83.4 2 4.3E-05 39.7 4.8 51 316-370 125-187 (225)
24 PF05506 DUF756: Domain of unk 83.2 9.5 0.00021 30.1 8.3 47 317-373 21-67 (89)
25 COG0832 UreB Urea amidohydrola 82.9 2.8 6E-05 33.9 4.8 51 316-370 20-82 (106)
26 PRK13192 bifunctional urease s 82.4 2.4 5.1E-05 38.8 4.8 51 316-370 129-191 (208)
27 TIGR02695 azurin azurin. Azuri 81.2 3.8 8.2E-05 34.7 5.4 53 317-373 26-99 (125)
28 COG1470 Predicted membrane pro 79.9 11 0.00024 38.9 9.1 68 316-399 399-467 (513)
29 PF07385 DUF1498: Protein of u 78.0 3.6 7.8E-05 38.3 4.6 44 321-366 111-165 (225)
30 PF10087 DUF2325: Uncharacteri 77.9 19 0.00042 28.7 8.5 41 116-171 41-81 (97)
31 PF04744 Monooxygenase_B: Mono 75.7 5.7 0.00012 39.7 5.6 53 315-372 264-334 (381)
32 PF06030 DUF916: Bacterial pro 75.7 11 0.00025 31.7 6.8 57 315-373 28-103 (121)
33 PF00927 Transglut_C: Transglu 73.0 10 0.00023 30.8 5.8 58 315-373 16-76 (107)
34 PF14796 AP3B1_C: Clathrin-ada 72.7 13 0.00029 32.4 6.6 53 316-373 87-140 (145)
35 PF06280 DUF1034: Fn3-like dom 71.4 46 0.00099 27.2 9.4 59 315-373 9-80 (112)
36 PF14016 DUF4232: Protein of u 67.3 22 0.00048 30.1 6.8 58 316-373 20-82 (131)
37 PRK00286 xseA exodeoxyribonucl 64.7 39 0.00084 34.9 9.3 125 26-180 108-237 (438)
38 TIGR00237 xseA exodeoxyribonuc 60.5 59 0.0013 33.7 9.7 124 26-180 102-232 (432)
39 COG1160 Predicted GTPases [Gen 59.9 24 0.00053 36.4 6.5 46 115-173 75-120 (444)
40 PF03808 Glyco_tran_WecB: Glyc 59.6 43 0.00092 29.9 7.5 49 113-180 89-139 (172)
41 PF09544 DUF2381: Protein of u 59.6 88 0.0019 30.6 10.2 72 315-399 203-275 (289)
42 PF09624 DUF2393: Protein of u 58.6 27 0.00058 30.3 5.9 59 315-373 63-133 (149)
43 TIGR01759 MalateDH-SF1 malate 58.5 9.4 0.0002 37.9 3.3 59 118-180 74-134 (323)
44 cd06533 Glyco_transf_WecG_TagA 57.9 58 0.0012 29.0 8.0 40 122-180 98-137 (171)
45 TIGR01756 LDH_protist lactate 54.7 8.4 0.00018 38.1 2.2 55 119-180 56-115 (313)
46 PLN02303 urease 51.8 20 0.00044 39.9 4.7 50 317-370 151-212 (837)
47 PF05753 TRAP_beta: Translocon 50.8 1E+02 0.0023 27.9 8.5 64 315-383 39-106 (181)
48 PLN00135 malate dehydrogenase 50.5 15 0.00033 36.3 3.2 59 118-180 53-113 (309)
49 PF02601 Exonuc_VII_L: Exonucl 49.7 72 0.0016 31.3 8.0 46 123-180 75-120 (319)
50 PRK05442 malate dehydrogenase; 49.6 17 0.00037 36.1 3.5 57 118-180 75-135 (326)
51 COG0039 Mdh Malate/lactate deh 48.2 18 0.00039 35.8 3.3 58 118-180 64-123 (313)
52 cd00704 MDH Malate dehydrogena 48.2 17 0.00037 36.1 3.2 57 118-180 71-131 (323)
53 PF06510 DUF1102: Protein of u 48.1 1.7E+02 0.0037 25.5 8.8 53 316-373 70-124 (146)
54 PLN00112 malate dehydrogenase 46.7 15 0.00033 38.1 2.7 57 118-180 171-231 (444)
55 TIGR01757 Malate-DH_plant mala 46.7 16 0.00035 37.2 2.8 57 118-180 115-175 (387)
56 PF08530 PepX_C: X-Pro dipepti 46.5 88 0.0019 28.7 7.6 56 315-373 97-162 (218)
57 PF00703 Glyco_hydro_2: Glycos 45.4 1.2E+02 0.0027 23.6 7.5 63 315-382 19-81 (110)
58 PF00056 Ldh_1_N: lactate/mala 44.8 7.8 0.00017 33.5 0.2 55 119-180 65-123 (141)
59 PF07495 Y_Y_Y: Y_Y_Y domain; 44.7 39 0.00085 24.4 4.0 34 350-398 13-46 (66)
60 cd01338 MDH_choloroplast_like 44.6 21 0.00045 35.4 3.2 57 118-180 73-133 (322)
61 PF06205 GT36_AF: Glycosyltran 44.5 22 0.00049 28.2 2.8 26 346-373 59-84 (90)
62 cd01857 HSR1_MMR1 HSR1/MMR1. 44.0 51 0.0011 28.0 5.2 18 114-131 2-19 (141)
63 PF00553 CBM_2: Cellulose bind 42.4 48 0.001 26.7 4.5 15 315-329 14-28 (101)
64 TIGR03079 CH4_NH3mon_ox_B meth 42.2 44 0.00095 33.6 4.9 54 315-373 283-354 (399)
65 PRK15249 fimbrial chaperone pr 41.2 74 0.0016 30.4 6.3 54 317-372 45-103 (253)
66 cd05290 LDH_3 A subgroup of L- 40.2 29 0.00062 34.2 3.4 58 118-180 63-124 (307)
67 TIGR03096 nitroso_cyanin nitro 40.2 1.1E+02 0.0024 26.3 6.6 26 357-398 94-119 (135)
68 TIGR01772 MDH_euk_gproteo mala 40.2 33 0.00073 33.9 3.9 56 118-180 62-121 (312)
69 PRK09926 putative chaperone pr 40.0 82 0.0018 29.9 6.4 54 317-372 42-99 (246)
70 cd00300 LDH_like L-lactate deh 39.9 20 0.00044 35.0 2.3 57 119-180 62-120 (300)
71 cd01336 MDH_cytoplasmic_cytoso 39.7 27 0.00058 34.7 3.1 57 118-180 73-133 (325)
72 TIGR01758 MDH_euk_cyt malate d 39.4 26 0.00057 34.8 3.0 57 118-180 70-130 (324)
73 PRK13556 azoreductase; Provisi 39.1 79 0.0017 28.9 6.0 36 115-161 81-116 (208)
74 PRK13211 N-acetylglucosamine-b 39.1 1.1E+02 0.0024 32.1 7.6 59 315-398 328-386 (478)
75 PRK15299 fimbrial chaperone pr 38.6 97 0.0021 29.0 6.6 54 317-372 39-94 (227)
76 PRK09918 putative fimbrial cha 38.6 90 0.002 29.3 6.4 51 317-372 41-93 (230)
77 PF10662 PduV-EutP: Ethanolami 37.9 1.6E+02 0.0034 25.6 7.3 19 114-132 54-72 (143)
78 PF06858 NOG1: Nucleolar GTP-b 37.7 97 0.0021 22.7 4.9 23 151-173 32-55 (58)
79 PF11611 DUF4352: Domain of un 37.0 66 0.0014 26.3 4.7 59 315-373 37-103 (123)
80 cd03708 GTPBP_III Domain III o 36.9 71 0.0015 24.6 4.6 39 357-398 44-82 (87)
81 PRK15295 fimbrial assembly cha 36.8 1.6E+02 0.0034 27.6 7.7 54 317-372 36-90 (226)
82 cd01337 MDH_glyoxysomal_mitoch 36.2 31 0.00067 34.1 2.9 56 118-180 63-122 (310)
83 PRK13555 azoreductase; Provisi 35.8 90 0.0019 28.8 5.8 36 115-161 81-116 (208)
84 TIGR01771 L-LDH-NAD L-lactate 35.3 26 0.00056 34.4 2.2 55 119-180 60-118 (299)
85 COG1361 S-layer domain [Cell e 35.2 1.4E+02 0.0031 31.3 7.9 58 315-373 168-226 (500)
86 PLN02602 lactate dehydrogenase 35.0 29 0.00062 34.9 2.5 55 119-180 101-159 (350)
87 PRK15218 fimbrial chaperone pr 34.1 1.8E+02 0.0039 27.3 7.5 55 317-373 35-93 (226)
88 PRK15211 fimbrial chaperone pr 33.5 2.2E+02 0.0049 26.7 8.1 49 317-373 39-93 (229)
89 PRK15224 pili assembly chapero 33.4 1.8E+02 0.0039 27.6 7.4 49 317-373 45-98 (237)
90 PF11906 DUF3426: Protein of u 33.4 1.1E+02 0.0025 26.2 5.8 59 315-373 69-136 (149)
91 cd05294 LDH-like_MDH_nadp A la 32.9 44 0.00096 32.8 3.4 57 119-180 68-126 (309)
92 PF00009 GTP_EFTU: Elongation 31.8 1.6E+02 0.0034 26.1 6.7 47 114-173 84-130 (188)
93 PF07233 DUF1425: Protein of u 31.4 2.7E+02 0.0058 22.1 8.7 57 315-373 25-82 (94)
94 TIGR02268 Myxococcus xanthus p 31.3 3.9E+02 0.0084 26.3 9.4 56 316-373 211-266 (295)
95 PF14079 DUF4260: Domain of un 31.1 23 0.0005 29.5 0.9 17 260-276 93-110 (113)
96 TIGR00696 wecB_tagA_cpsF bacte 30.6 2.6E+02 0.0056 25.1 7.7 11 122-132 99-109 (177)
97 PRK15246 fimbrial assembly cha 30.6 1.7E+02 0.0038 27.5 6.9 54 317-372 27-84 (233)
98 cd09030 DUF1425 Putative perip 30.3 2.8E+02 0.0062 22.1 9.8 57 315-373 33-90 (101)
99 TIGR01451 B_ant_repeat conserv 30.1 71 0.0015 22.6 3.2 27 315-342 13-39 (53)
100 TIGR02836 spore_IV_A stage IV 30.1 1.5E+02 0.0034 30.8 6.7 55 119-179 139-194 (492)
101 PF11614 FixG_C: IG-like fold 29.9 2.4E+02 0.0051 23.1 7.0 50 317-373 34-84 (118)
102 PRK15233 putative fimbrial cha 29.8 2.2E+02 0.0049 27.1 7.5 49 317-373 57-110 (246)
103 cd05291 HicDH_like L-2-hydroxy 29.7 39 0.00084 33.1 2.4 55 119-180 64-122 (306)
104 PF06165 Glyco_transf_36: Glyc 29.6 37 0.00079 28.0 1.9 19 259-277 31-49 (110)
105 PF01345 DUF11: Domain of unkn 29.2 65 0.0014 24.2 3.1 18 315-332 42-59 (76)
106 PRK00066 ldh L-lactate dehydro 28.4 44 0.00096 33.0 2.6 55 119-180 69-127 (315)
107 PF09587 PGA_cap: Bacterial ca 28.3 2E+02 0.0042 27.1 6.9 64 122-200 182-245 (250)
108 TIGR03566 FMN_reduc_MsuE FMN r 28.2 1.4E+02 0.0031 26.3 5.6 53 112-175 57-111 (174)
109 PRK15253 putative fimbrial ass 27.9 2.6E+02 0.0056 26.6 7.5 54 317-372 50-107 (242)
110 COG4454 Uncharacterized copper 27.9 85 0.0018 27.7 3.9 17 357-373 116-132 (158)
111 PRK00170 azoreductase; Reviewe 27.8 1.2E+02 0.0026 27.2 5.2 38 113-161 76-113 (201)
112 PRK12360 4-hydroxy-3-methylbut 27.7 1.1E+02 0.0024 29.8 5.1 52 113-183 199-252 (281)
113 PF09912 DUF2141: Uncharacteri 27.5 1.4E+02 0.0031 24.6 5.1 65 320-389 1-70 (112)
114 TIGR01763 MalateDH_bact malate 27.5 61 0.0013 31.8 3.4 54 120-180 66-123 (305)
115 PF01926 MMR_HSR1: 50S ribosom 26.7 1.1E+02 0.0025 24.5 4.5 44 116-173 72-115 (116)
116 cd01858 NGP_1 NGP-1. Autoanti 26.5 1.3E+02 0.0028 25.8 5.0 14 118-131 3-16 (157)
117 PF11071 DUF2872: Protein of u 26.1 1.3E+02 0.0028 25.9 4.5 17 118-134 67-83 (141)
118 PRK10378 inactive ferrous ion 25.2 2.3E+02 0.0051 28.8 7.0 44 318-373 53-96 (375)
119 KOG1496 Malate dehydrogenase [ 24.8 1E+02 0.0022 29.5 4.1 55 118-179 75-134 (332)
120 PRK01045 ispH 4-hydroxy-3-meth 24.5 1.5E+02 0.0033 29.1 5.4 80 112-213 199-282 (298)
121 PF04314 DUF461: Protein of un 24.4 3.9E+02 0.0085 21.7 8.4 25 316-343 16-40 (110)
122 COG1159 Era GTPase [General fu 24.3 1.9E+02 0.0042 28.4 6.0 47 114-173 76-122 (298)
123 PRK15188 fimbrial chaperone pr 23.8 3.7E+02 0.008 25.3 7.7 53 317-373 44-98 (228)
124 PRK05086 malate dehydrogenase; 23.5 73 0.0016 31.4 3.1 57 118-180 64-123 (312)
125 COG3354 FlaG Putative archaeal 23.2 5.1E+02 0.011 22.7 8.6 14 315-328 69-82 (154)
126 PF02421 FeoB_N: Ferrous iron 23.2 1.3E+02 0.0027 26.6 4.2 37 122-173 77-113 (156)
127 TIGR03646 YtoQ_fam YtoQ family 23.0 1.6E+02 0.0034 25.4 4.5 17 118-134 70-86 (144)
128 PRK15308 putative fimbrial pro 22.8 3.4E+02 0.0074 25.7 7.3 53 317-371 34-98 (234)
129 COG0486 ThdF Predicted GTPase 22.5 1.8E+02 0.004 30.3 5.7 46 114-173 287-332 (454)
130 PTZ00325 malate dehydrogenase; 22.2 75 0.0016 31.5 2.9 57 118-180 71-130 (321)
131 smart00854 PGA_cap Bacterial c 21.9 3.1E+02 0.0068 25.5 7.0 64 122-200 171-234 (239)
132 cd05293 LDH_1 A subgroup of L- 21.9 58 0.0013 32.1 2.0 55 119-180 67-125 (312)
133 PF02450 LCAT: Lecithin:choles 21.6 97 0.0021 31.5 3.6 60 154-213 107-174 (389)
134 TIGR03352 VI_chp_3 type VI sec 21.3 2.5E+02 0.0054 24.4 5.6 24 350-373 81-104 (146)
135 PLN00106 malate dehydrogenase 21.1 89 0.0019 31.0 3.1 57 117-179 80-139 (323)
136 cd05295 MDH_like Malate dehydr 21.1 69 0.0015 33.4 2.4 18 118-135 194-211 (452)
137 PF00635 Motile_Sperm: MSP (Ma 20.9 3.3E+02 0.0071 21.5 6.1 50 315-373 19-69 (109)
138 PRK15231 fimbrial adhesin prot 20.7 3.6E+02 0.0078 23.5 6.2 62 324-399 76-145 (150)
139 PF03358 FMN_red: NADPH-depend 20.5 1.9E+02 0.0041 24.5 4.8 52 111-173 58-114 (152)
140 PRK09739 hypothetical protein; 20.4 2E+02 0.0044 25.9 5.2 56 112-178 68-133 (199)
141 PF13598 DUF4139: Domain of un 20.1 3.5E+02 0.0076 26.3 7.2 27 315-343 243-269 (317)
142 COG0059 IlvC Ketol-acid reduct 20.0 8.7E+02 0.019 24.2 9.5 16 116-131 67-82 (338)
No 1
>PLN03080 Probable beta-xylosidase; Provisional
Probab=100.00 E-value=5.7e-86 Score=712.19 Aligned_cols=406 Identities=47% Similarity=0.884 Sum_probs=334.9
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccccC
Q 014987 1 MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGV 80 (415)
Q Consensus 1 ~~lGlfd~~p~~~~~~~~~~~~v~~~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~g~ 80 (415)
||+||||.+|...+|.......+++++|+++|+++|++|||||||++++|||++.+.++|+||||+++....++|+|++.
T Consensus 364 ~rlGlfd~~~~~~~~~~~~~~~v~~~~h~~lA~eaA~~siVLLKN~~~~LPL~~~~~~~IaViGp~A~~~~~~~g~~~~~ 443 (779)
T PLN03080 364 LRLGLFDGDPRNGWYGKLGPNNVCTKEHRELALEAARQGIVLLKNDKKFLPLNKSEVSSLAIIGPMANDPYNLGGDYTGV 443 (779)
T ss_pred HHhCCCcCCCcccccccccccccCCHHHHHHHHHHHHhCEEEEecCCCCCCCCCCCCCEEEEECCCCCCcCcCCCCCCCC
Confidence 58999994343445555556778999999999999999999999999999998765579999999999888778888888
Q ss_pred CCcccCHHHHHhhhc-ceeeeeccCccccCCccchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHH
Q 014987 81 ACGYTTPLQGISRYA-KTIHQAGCFGVACNGNQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSR 159 (415)
Q Consensus 81 ~~~~~t~~~~l~~~~-~~~~~~g~~~~~~~~~~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~ 159 (415)
+++..+++++|+++. .+.|..||....+.+...++++++++++||+|||++|.+...++|+.||.+|.||+.|.+||++
T Consensus 444 ~~~~~t~~~gl~~~~~~~~y~~g~~~~~~~~~~~~~~A~~~A~~aD~vIv~~G~~~~~e~E~~Dr~~l~Lp~~Q~~LI~~ 523 (779)
T PLN03080 444 PCQPTTLFKGLQAYVKKTSFAAGCKDVSCNSDTGFGEAIAIAKRADFVVVVAGLDLSQETEDHDRVSLLLPGKQMDLISS 523 (779)
T ss_pred CCCCCCHHHHHHHHhhcceeccCccccccCchhhHHHHHHHhccCCEEEEEeCCCccccccCCCcccccCCccHHHHHHH
Confidence 888899999999875 3568888754333344567889999999999999999998899999999999999999999999
Q ss_pred HHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCChhHHHHHHHHhhcCCCCCccCCeeeccccccCCCCccccc
Q 014987 160 VAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMR 239 (415)
Q Consensus 160 la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~~~g~AladvL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~ 239 (415)
+++++++|||||+++|+|++|.|+.+.++++|||++|+||+++|+|+||||||++|||||||+||||+++ .++|++|++
T Consensus 524 va~~~~~pvIvVl~~g~Pv~l~~~~~~~~v~AIl~~~ypGqegG~AiAdvLfG~vnPsGkLPvT~~p~~~-~~~P~~~~~ 602 (779)
T PLN03080 524 VASVSKKPVVLVLTGGGPVDVSFAKQDPRIASILWIGYPGEVGGQALAEIIFGDYNPGGRLPMTWYPESF-TAVPMTDMN 602 (779)
T ss_pred HHhhcCCCEEEEEeCCceeeccchhccCCCCeEEEccCCcccchhhhHHHHcCCCCCCCcCeeeeccccc-ccCCccccC
Confidence 9976667899999999999999986567899999999999999999999999999999999999989887 789998887
Q ss_pred ccc--cCCCCCcccccCCCCcccccCcCCCCCCeeecccccCCCcccccc---ccccccc--cccccccceeccc-cCCC
Q 014987 240 MRA--ARGYPGRTYRFYKGPVVFPFGHGMSYTTFAHTLSKAPNQFSVPIA---TSLYAFK--NTTISSNAIRVAH-TNCN 311 (415)
Q Consensus 240 ~~~--~~~~~~~~Yr~~~~~~lypFG~GLSYt~F~ys~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-~~~~ 311 (415)
+++ ..+|++++||||+.+|+||||||||||+|+|++++++........ .....-. ..........+.. ..|+
T Consensus 603 ~~~~~~~~~pg~~Yr~~~~~p~ypFG~GLSYTtF~ys~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (779)
T PLN03080 603 MRADPSRGYPGRTYRFYTGDVVYGFGYGLSYTKFSYKILSAPKKLSLSRSSVQDSISRKPLLQRRDELDYVQIEDIASCE 682 (779)
T ss_pred cccccccCCCCCCceeCCCCcceeccCCCccceeEeccccccccccccccccccccccccccccccccccccccccccCC
Confidence 754 345888999999999999999999999999999875421111000 0000000 0000000000000 1123
Q ss_pred CceeEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecC
Q 014987 312 DAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPM 390 (415)
Q Consensus 312 ~~~~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~ 390 (415)
.. .++|+|+|||||+++|+||||||+++|... .+|.|+|+||+||.|+|||+++|+|+|+.+++|++||..+.|++++
T Consensus 683 ~~-~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~Ges~~V~~~l~~~~~ls~~d~~~~~~v~~ 761 (779)
T PLN03080 683 SL-RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTASGRSTETEIVVDPCKHLSVANEEGKRVLPL 761 (779)
T ss_pred Cc-eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCCCCEEEEEEEeCchHHceEEcCCCcEEEeC
Confidence 22 489999999999999999999999999876 7999999999999999999999999999657999999999999999
Q ss_pred eEEEEEEeCCCceEEEEE
Q 014987 391 GEHSLHIGDLKHSISLQA 408 (415)
Q Consensus 391 G~~~~~vg~~~~~~~~~~ 408 (415)
|+|+|+||+++|+++|++
T Consensus 762 G~y~l~vG~~~~~~~~~~ 779 (779)
T PLN03080 762 GDHVLMLGDLEHSLSIEI 779 (779)
T ss_pred ccEEEEEeCCccceEEeC
Confidence 999999999999998864
No 2
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=100.00 E-value=6.6e-78 Score=651.25 Aligned_cols=369 Identities=31% Similarity=0.484 Sum_probs=305.0
Q ss_pred CccCCCCCCCCCCCC--CC-CCCCCCCCHHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCccccccccc
Q 014987 1 MRLGMFDGEPSAQPF--GN-LGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNY 77 (415)
Q Consensus 1 ~~lGlfd~~p~~~~~--~~-~~~~~v~~~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~ 77 (415)
|++|||| +|+.+.- .. .....+.+++|+++|++++++|||||||++++|||++. ++|+|||+.++....+.|+|
T Consensus 354 ~~~glf~-~p~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~sivLLKN~~~~LPL~~~--~~IaviG~~a~~~~~~~G~~ 430 (765)
T PRK15098 354 YDMGLFN-DPYSHLGPKESDPVDTNAESRLHRKEAREVARESLVLLKNRLETLPLKKS--GTIAVVGPLADSQRDVMGSW 430 (765)
T ss_pred HHhCCCC-CCccccccccccccccccCCHHHHHHHHHHHHhcEEEEecCCCCCCCCCC--CEEEEECCCcccccccCCCc
Confidence 5789999 6763210 00 01123567899999999999999999999999999853 69999999998776566766
Q ss_pred c--cCCCcccCHHHHHhhhc----ceeeeeccCcccc-------------------CCccchHHHHHHhhcCCEEEEEcC
Q 014987 78 A--GVACGYTTPLQGISRYA----KTIHQAGCFGVAC-------------------NGNQLIGAAEVAARQADATVLVMG 132 (415)
Q Consensus 78 ~--g~~~~~~t~~~~l~~~~----~~~~~~g~~~~~~-------------------~~~~~~~~a~~~a~~aD~vIv~~g 132 (415)
+ +.+.+.++++++|+++. .+.|..||..... .....+++++++++++|+|||++|
T Consensus 431 s~~~~~~~~vt~~~gl~~~~~~~~~v~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~A~~aD~vIv~vg 510 (765)
T PRK15098 431 SAAGVADQSVTVLQGIKNAVGDKAKVLYAKGANVTDDKGIIDFLNQYEEAVKVDPRSPQAMIDEAVQAAKQADVVVAVVG 510 (765)
T ss_pred cccCccCCCCCHHHHHHHhhcCCceEEEecccccccCcccchhhhccccccccccccchhhHHHHHHHHhcCCEEEEEEc
Confidence 4 55667899999999864 3567777632100 112356788999999999999999
Q ss_pred CCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCChhHHHHHHHHhhc
Q 014987 133 LDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQAGGAAIADVLFG 212 (415)
Q Consensus 133 ~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~~~g~AladvL~G 212 (415)
.....++|+.||.+|.||+.|.+||+++++ .++|||||+++|+||+|.|+. ++++|||++|+||+++|+|+||+|||
T Consensus 511 ~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~-~~~~vVvVl~~g~P~~l~~~~--~~v~AiL~a~~pG~e~G~AiAdvLfG 587 (765)
T PRK15098 511 EAQGMAHEASSRTDITIPQSQRDLIAALKA-TGKPLVLVLMNGRPLALVKED--QQADAILETWFAGTEGGNAIADVLFG 587 (765)
T ss_pred CCCCccccCCCcccccCCHHHHHHHHHHHH-hCcCEEEEEeCCceeeccchh--hcCCeEEeecCCchhhhHHHHHHHcC
Confidence 998899999999999999999999999986 568999999999999999873 48999999999999999999999999
Q ss_pred CCCCCccCCeeeccccccCCCCcccccccccCCC-----CCcccccCCC--CcccccCcCCCCCCeeecccccCCCcccc
Q 014987 213 RANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGY-----PGRTYRFYKG--PVVFPFGHGMSYTTFAHTLSKAPNQFSVP 285 (415)
Q Consensus 213 ~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~-----~~~~Yr~~~~--~~lypFG~GLSYt~F~ys~~~~~~~~~~~ 285 (415)
++|||||||+|| |++. +++|.++........| .+.+||||+. +|+||||||||||+|+||++++.+
T Consensus 588 ~~nPsGkLPvT~-p~~~-~~~P~~~~~~~~~~~y~e~~~~~y~yry~d~~~~plypFG~GLSYT~F~ys~l~v~~----- 660 (765)
T PRK15098 588 DYNPSGKLPMSF-PRSV-GQIPVYYNHLNTGRPYNPDKPNKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVKLSS----- 660 (765)
T ss_pred CCCCCCCCccce-eCCC-CcCccccccCCCCCccccCcccccccceeccCCCccccccCCCCCccEEeeccEecc-----
Confidence 999999999997 8877 7788653221111111 1125799975 599999999999999999998742
Q ss_pred ccccccccccccccccceeccccCCCCceeEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCE
Q 014987 286 IATSLYAFKNTTISSNAIRVAHTNCNDAMSLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGAL 364 (415)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes 364 (415)
.. ... +. +++|+|+|||||+++|+||||||+++|.++ .+|.|+|+||+||+|+|||+
T Consensus 661 ---------------~~--~~~----~~-~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~~~~P~k~L~gF~Kv~L~pGes 718 (765)
T PRK15098 661 ---------------PT--MKR----DG-KVTASVTVTNTGKREGATVVQLYLQDVTASMSRPVKELKGFEKIMLKPGET 718 (765)
T ss_pred ---------------cc--ccC----CC-eEEEEEEEEECCCCCccEEEEEeccCCCCCCCCHHHhccCceeEeECCCCe
Confidence 00 110 11 699999999999999999999999999877 89999999999999999999
Q ss_pred EEEEEEeCCCCCeeEEeCCCCEEecCeEEEEEEeCCCceEE
Q 014987 365 QSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIGDLKHSIS 405 (415)
Q Consensus 365 ~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~~vg~~~~~~~ 405 (415)
++|+|+|+. ++|++||.+++|++++|+|+|+||.||++++
T Consensus 719 ~~V~~~l~~-~~L~~~d~~~~~~~e~G~y~v~vG~ss~d~~ 758 (765)
T PRK15098 719 QTVSFPIDI-EALKFWNQQMKYVAEPGKFNVFIGLDSARVK 758 (765)
T ss_pred EEEEEeecH-HHhceECCCCcEEEeCceEEEEEECCCCccc
Confidence 999999999 9999999999999999999999999999875
No 3
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=100.00 E-value=3.2e-41 Score=317.47 Aligned_cols=217 Identities=41% Similarity=0.599 Sum_probs=153.4
Q ss_pred eEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccc-cCCCcccCHHHHHhhhcc---eeeeeccCccccCCccchH
Q 014987 40 IVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA-GVACGYTTPLQGISRYAK---TIHQAGCFGVACNGNQLIG 115 (415)
Q Consensus 40 ivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~-g~~~~~~t~~~~l~~~~~---~~~~~g~~~~~~~~~~~~~ 115 (415)
||||||++++|||++++. +|+|+|+.+.....++|+++ ..+.+..+++++|+++.. ..+..++. ...+...++
T Consensus 1 ivLLKN~~~~LPL~~~~~-~v~viG~~~~~~~~~g~g~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~ 77 (227)
T PF01915_consen 1 IVLLKNEGNLLPLKPDKK-KVAVIGPNADNPVAQGGGSGNVNPGYGVTPLDALKQRFGNAGVVVPEGGD--AVDDDEGID 77 (227)
T ss_dssp -EEEEEGCG--SB-TTST-EEEEESTTTTSHHHCHBSTTSSTCSTHBHHHHHHHHHHHTTSEEEECCCC--CCCCCSCHH
T ss_pred CEEEEeCCCCCCCCCCCC-EEEEEcCccccccccCCcccccCccccccHHhhhccccCCCceEEeeecc--ccccccchH
Confidence 799999999999998743 99999999988665555443 345567899999998854 22222110 112456778
Q ss_pred HHHHHhhcCCEEEEEcCCCc------ccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCcCCCCCc
Q 014987 116 AAEVAARQADATVLVMGLDQ------SIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRI 189 (415)
Q Consensus 116 ~a~~~a~~aD~vIv~~g~~~------~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~~~~~~v 189 (415)
++.+.++++|+|||++|... ..+++ .|+.++.++..|.+||+++++. ++|+|||+++++||++.++. +++
T Consensus 78 ~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~-~~~~~~~l~~~q~~li~~v~~~-~~~~Ivvv~~~~P~~l~~~~--~~~ 153 (227)
T PF01915_consen 78 EAVAAAKEADVVIVFVGRPSGEGNDNNTEGE-SDRSDLALPANQQELIKAVAAA-GKKVIVVVNSGNPYDLDPWE--DNV 153 (227)
T ss_dssp HHHHHHHCSSEEEEEEETTSBCCCSS-EETT-GSCSSTBCCCHHHHHHHHHHHH-HSCEEEEEE-SSGGCGHCCH--HC-
T ss_pred HHHHHhhcCCEEEEecccccccccccccccc-CCcccccchhhHHHHHHHHHHh-cCCeEEEEecCCccccHHHH--hhh
Confidence 89999999999999998222 11223 6899999999999999999875 47899999999999998774 489
Q ss_pred cEEEeccCCChhHHHHHHHHhhcCCCCCccCCeeeccccccCCCCcccccccccCCCCCcccccCCCCcccccCcCCCCC
Q 014987 190 GAILWVGYPGQAGGAAIADVLFGRANPGGKLPMTWYPQDYVSRLPMTDMRMRAARGYPGRTYRFYKGPVVFPFGHGMSYT 269 (415)
Q Consensus 190 ~Ail~a~~~g~~~g~AladvL~G~~nPsGkLPvT~~p~~~~~~~p~~~~~~~~~~~~~~~~Yr~~~~~~lypFG~GLSYt 269 (415)
+|||++|++|+++++|+||+|||++|||||||+|| |++. +++|...... ..+++|++....++||||||||||
T Consensus 154 ~Ail~~~~~g~~~~~A~advL~G~~~PsGkLPvT~-p~~~-~~~p~~~~~~-----~~~~~~~~~~~~~~~~fG~GLsyt 226 (227)
T PF01915_consen 154 DAILAAYYPGQEGGEAIADVLFGDVNPSGKLPVTI-PKSM-EDIPAYYNYG-----MYGRTYDYDSGPPLYPFGYGLSYT 226 (227)
T ss_dssp SEEEEEES-GSBHHHHHHHHHTTSS---B--SS-B-ESSG-GGTTTTTTTS------THCCHHHHTTSESB-TT--B-TT
T ss_pred ceEeeccccchHHHHHHHHHHcCCCCCCCCcceec-cCCh-hhCCCccccc-----ccCcccccCCCCccCcCCCCCEee
Confidence 99999999999999999999999999999999998 8776 6777432111 123457777789999999999999
Q ss_pred C
Q 014987 270 T 270 (415)
Q Consensus 270 ~ 270 (415)
+
T Consensus 227 ~ 227 (227)
T PF01915_consen 227 Y 227 (227)
T ss_dssp -
T ss_pred C
Confidence 6
No 4
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=99.85 E-value=2.3e-21 Score=149.13 Aligned_cols=69 Identities=26% Similarity=0.463 Sum_probs=59.8
Q ss_pred eEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCC-CCEEecCeEEEEEEeCCC
Q 014987 332 HTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKF-GIRRIPMGEHSLHIGDLK 401 (415)
Q Consensus 332 evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~-~~~~~~~G~~~~~vg~~~ 401 (415)
||||||+++|.+. .+|.|+|+||+||.|+|||+++|+|+|+. ++|++||.+ ++|++++|+|+|+||+||
T Consensus 1 EVvqlY~~~~~~~~~~P~~~L~gF~rv~l~pGes~~v~~~l~~-~~l~~~d~~~~~~~~~~G~~~l~vG~sS 71 (71)
T PF14310_consen 1 EVVQLYVSDPQSSVQRPVKQLVGFERVSLAPGESKTVSFTLPP-EDLAYWDEDAGKWVIEPGTYTLSVGDSS 71 (71)
T ss_dssp EEEEEEEEESSSSS---S-EEEEEEEEEE-TT-EEEEEEEEEH-HHHEEEETTTTCEEE-SEEEEEEEECCT
T ss_pred CEEEEEEEeCCCCCCCchheecceEEEEECCCCEEEEEEEECH-HHEeeEcCCCCEEEEeCCeEEEEEECCC
Confidence 8999999999987 89999999999999999999999999999 999999998 699999999999999986
No 5
>COG1472 BglX Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism]
Probab=97.51 E-value=3.9e-05 Score=78.04 Aligned_cols=60 Identities=42% Similarity=0.721 Sum_probs=49.9
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccc
Q 014987 1 MRLGMFDGEPSAQPFGNLGPRDVCTPAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYA 78 (415)
Q Consensus 1 ~~lGlfd~~p~~~~~~~~~~~~v~~~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~ 78 (415)
+++|+|+ +|+.. +|++++++++++|+|||||+..+|||+ .+..+|+++||.++.. . |+|+
T Consensus 313 ~~~~~f~-~~~~~-------------~~~~~a~~~~~~~~~ll~n~~~~~p~~-~~~~~i~v~g~~~~~~-~--g~~~ 372 (397)
T COG1472 313 FKLGLFE-NPYSS-------------EHRALAREAARESIVLLKNDGGLLPLK-KSAKRIAVIGPYADDG-D--GGWS 372 (397)
T ss_pred HHhcccc-CCCch-------------hhHHHHHHHHHHHHHHHHhccCCCccc-cccCceEEEccccccC-C--CCee
Confidence 3678999 76521 899999999999999999998899999 5556999999999877 4 5554
No 6
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=96.87 E-value=0.0054 Score=49.23 Aligned_cols=61 Identities=15% Similarity=0.266 Sum_probs=44.1
Q ss_pred eEEEEEEEEeCCCC-CcceEEEEeeeCCCCCCCccceeccccee-eeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeE
Q 014987 315 SLGLHVDIKNTGDM-AGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGE 392 (415)
Q Consensus 315 ~~~vsv~V~NtG~~-~G~evvQlY~~~~~~~~~p~~~L~gF~kv-~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~ 392 (415)
.++++++|+|.|.. ++.-.|++|+... +.+-..| .|+||++++++|++.. . .+|.
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~~~---------~~~~~~i~~L~~g~~~~v~~~~~~-~-------------~~G~ 76 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLDGN---------SVSTVTIPSLAPGESETVTFTWTP-P-------------SPGS 76 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEETTE---------EEEEEEESEB-TTEEEEEEEEEE--S-------------S-CE
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEECCc---------eeccEEECCcCCCcEEEEEEEEEe-C-------------CCCe
Confidence 68999999999987 4666788887653 2255556 7999999999999987 3 5688
Q ss_pred EEEEEe
Q 014987 393 HSLHIG 398 (415)
Q Consensus 393 ~~~~vg 398 (415)
|+|.+-
T Consensus 77 ~~i~~~ 82 (101)
T PF07705_consen 77 YTIRVV 82 (101)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877654
No 7
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=96.15 E-value=0.051 Score=42.73 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=35.1
Q ss_pred EEEEEEEEeCCCCC------cceEEEEeeeCCCCC-----CCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCC
Q 014987 316 LGLHVDIKNTGDMA------GTHTLLVFAKPPAGN-----WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFG 384 (415)
Q Consensus 316 ~~vsv~V~NtG~~~------G~evvQlY~~~~~~~-----~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~ 384 (415)
+.+.++|+|.++.+ ...-.-+.|.++.+. ..-.--.-.++.+.|+|||+.+.+++++. .+++
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~-~~~~------ 74 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDL-KDLS------ 74 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS-----------
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECC-CCCC------
Confidence 56778888888632 111222445544442 11122345667788999999999999998 6554
Q ss_pred CEEecCeEEEEEE
Q 014987 385 IRRIPMGEHSLHI 397 (415)
Q Consensus 385 ~~~~~~G~~~~~v 397 (415)
+|+|++.+
T Consensus 75 -----~G~Y~~~a 82 (82)
T PF12690_consen 75 -----PGEYTLEA 82 (82)
T ss_dssp -----SEEEEEEE
T ss_pred -----CceEEEeC
Confidence 89998853
No 8
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.74 E-value=0.064 Score=41.48 Aligned_cols=67 Identities=18% Similarity=0.319 Sum_probs=35.9
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceeccccee-eeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEE
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 393 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv-~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~ 393 (415)
.++++++|+|.|+.+-. -+.+=+..|.+ .. ..-.. .++ .|+|||+++++|.|.. ..=+ .+|+|
T Consensus 6 ~~~~~~tv~N~g~~~~~-~v~~~l~~P~G-W~--~~~~~-~~~~~l~pG~s~~~~~~V~v-p~~a----------~~G~y 69 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLT-NVSLSLSLPEG-WT--VSASP-ASVPSLPPGESVTVTFTVTV-PADA----------APGTY 69 (78)
T ss_dssp EEEEEEEEE--SSS-BS-S-EEEEE--TT-SE-----EE-EEE--B-TTSEEEEEEEEEE--TT------------SEEE
T ss_pred EEEEEEEEEECCCCcee-eEEEEEeCCCC-cc--ccCCc-cccccCCCCCEEEEEEEEEC-CCCC----------CCceE
Confidence 68999999999976532 23444455543 11 00000 122 7999999999999987 2211 67999
Q ss_pred EEEE
Q 014987 394 SLHI 397 (415)
Q Consensus 394 ~~~v 397 (415)
.|.+
T Consensus 70 ~v~~ 73 (78)
T PF10633_consen 70 TVTV 73 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 9
>PRK13202 ureB urease subunit beta; Reviewed
Probab=92.69 E-value=0.28 Score=39.87 Aligned_cols=50 Identities=22% Similarity=0.143 Sum_probs=29.5
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccc-------eecccceeeeCCCCEEEEEEE
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNK-------QLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~-------~L~gF~kv~l~pGes~~V~~~ 370 (415)
+++++|+|||+|+ ||+=-+.+.-. ..... ..-.=+-|..+||++++|++.
T Consensus 22 ~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 22 RLQMRIINAGDRP----VQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred eEEEEEEeCCCCc----eEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 6899999999998 56521111110 10111 112224467799999999874
No 10
>PRK13203 ureB urease subunit beta; Reviewed
Probab=92.29 E-value=0.3 Score=39.54 Aligned_cols=51 Identities=18% Similarity=0.102 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccc-------eecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNK-------QLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~-------~L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-. ..... ..-.=+-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 20 ETVTLTVANTGDRP----IQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEEEEEEeCCCCc----eEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 66522111110 11111 112223467799999999874
No 11
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=91.46 E-value=1.5 Score=35.26 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=37.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCCCCCeeEE
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVV 380 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~ 380 (415)
.....++|+|+|....+-- ++.+...... --..+..-.|+||++.++++++........+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~----v~~~~~~~~~--~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~ 80 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFR----VRQPESLSSF--FSVEPPSGFLAPGESVELEVTFSPTKPLGDY 80 (102)
T ss_pred EEEEEEEEEECCCCCEEEE----EEeCCcCCCC--EEEECCCCEECCCCEEEEEEEEEeCCCCceE
Confidence 5789999999999885433 3333311111 1112344569999999999999931444433
No 12
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=91.17 E-value=0.5 Score=38.27 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccce-------ecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQ-------LIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~-------L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-. ...... .-.=+-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRp----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T cd00407 20 EAVTLKVKNTGDRP----IQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV 82 (101)
T ss_pred CEEEEEEEeCCCcc----eEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE
Confidence 37899999999998 66521111110 111111 12223467899999999874
No 13
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=90.32 E-value=0.64 Score=37.62 Aligned_cols=51 Identities=24% Similarity=0.132 Sum_probs=30.0
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccc-------eecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNK-------QLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~-------~L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|+|+|+ ||+=-+.+.-. ..... ..-.=+-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 20 KTVSVKVKNTGDRP----IQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred cEEEEEEEeCCCcc----eEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 66521111110 11111 112224467899999999874
No 14
>PRK13205 ureB urease subunit beta; Reviewed
Probab=89.83 E-value=0.67 Score=40.17 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=30.6
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccce-------ecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQ-------LIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~-------L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-. ...... .-.=+-|..+||++++|++.
T Consensus 20 ~~i~L~V~NtGDRP----IQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV 82 (162)
T PRK13205 20 EAKTIEIINTGDRP----VQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV 82 (162)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 36899999999998 66522111110 111111 11224467899999999986
No 15
>PRK13204 ureB urease subunit beta; Reviewed
Probab=89.50 E-value=0.73 Score=40.05 Aligned_cols=51 Identities=16% Similarity=0.090 Sum_probs=30.1
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccce-------ecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQ-------LIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~-------L~gF~kv~l~pGes~~V~~~ 370 (415)
-.++++|+|||+|+ ||+=-+.+.-. ...... +-.=+-|..+||++++|++.
T Consensus 43 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 105 (159)
T PRK13204 43 PRTTLTVRNTGDRP----IQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV 105 (159)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999998 66521111110 111111 11223467899999999885
No 16
>COG1470 Predicted membrane protein [Function unknown]
Probab=89.48 E-value=1.4 Score=45.23 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=45.6
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeee-CCCC-C-CCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCe
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAK-PPAG-N-WSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMG 391 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~-~~~~-~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G 391 (415)
+...+|.+.|.|.-+=.-. |=+. .|.. . ..-. .=-.-.|+.|.|||+++|++++.+ ..=+ ++|
T Consensus 285 t~sf~V~IeN~g~~~d~y~--Le~~g~pe~w~~~Fte-g~~~vt~vkL~~gE~kdvtleV~p-s~na----------~pG 350 (513)
T COG1470 285 TASFTVSIENRGKQDDEYA--LELSGLPEGWTAEFTE-GELRVTSVKLKPGEEKDVTLEVYP-SLNA----------TPG 350 (513)
T ss_pred ceEEEEEEccCCCCCceeE--EEeccCCCCcceEEee-CceEEEEEEecCCCceEEEEEEec-CCCC----------CCC
Confidence 6789999999997552222 2222 2221 1 0000 111235778999999999999988 3222 789
Q ss_pred EEEEEEeCCC
Q 014987 392 EHSLHIGDLK 401 (415)
Q Consensus 392 ~~~~~vg~~~ 401 (415)
+|.+.|-.++
T Consensus 351 ~Ynv~I~A~s 360 (513)
T COG1470 351 TYNVTITASS 360 (513)
T ss_pred ceeEEEEEec
Confidence 9999877544
No 17
>PRK13201 ureB urease subunit beta; Reviewed
Probab=88.23 E-value=1 Score=38.17 Aligned_cols=51 Identities=18% Similarity=0.091 Sum_probs=30.3
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccce-------ecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQ-------LIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~-------L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-. ...... .-.=+-|..+||++++|++.
T Consensus 20 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 82 (136)
T PRK13201 20 PETVIEVENTGDRP----IQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV 82 (136)
T ss_pred CEEEEEEEeCCCcc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 46899999999998 66521111110 111111 11223467899999999985
No 18
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=88.21 E-value=1.8 Score=35.04 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=25.7
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCc-----cc-------eecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSP-----NK-------QLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p-----~~-------~L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-...| .. .+-.=+-|..+||++++|++.
T Consensus 19 ~~~~l~V~N~GDRP----IQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV 81 (100)
T PF00699_consen 19 ERITLEVTNTGDRP----IQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELV 81 (100)
T ss_dssp EEEEEEEEE-SSS-----EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEE
T ss_pred cEEEEEEEeCCCcc----eEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEE
Confidence 57999999999998 66621111110111 10 111223467899999999874
No 19
>PRK13198 ureB urease subunit beta; Reviewed
Probab=86.54 E-value=1.4 Score=38.31 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccce-------ecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQ-------LIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~-------L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|||+|+ ||+=-+.+.-. ...... .-.=+-|..+||++++|++.
T Consensus 48 ~~~~l~V~NtGDRP----IQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV 110 (158)
T PRK13198 48 PVTKVKVRNTGDRP----IQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI 110 (158)
T ss_pred cEEEEEEEeCCCCc----eEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE
Confidence 36899999999998 66521111110 111111 12224567899999999885
No 20
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=85.21 E-value=2.3 Score=29.17 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=27.2
Q ss_pred EEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEE
Q 014987 319 HVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 319 sv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~ 370 (415)
+++++|+|+.. |.+..-..+ + =....+.|-.|+|||+..++++
T Consensus 1 ~F~~~N~g~~~------L~I~~v~tsCg---Ct~~~~~~~~i~PGes~~i~v~ 44 (45)
T PF07610_consen 1 TFEFTNTGDSP------LVITDVQTSCG---CTTAEYSKKPIAPGESGKIKVT 44 (45)
T ss_pred CEEEEECCCCc------EEEEEeeEccC---CEEeeCCcceECCCCEEEEEEE
Confidence 36899999765 444443332 1 0123355566999999998875
No 21
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=84.70 E-value=5.6 Score=33.17 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCC-CC-CCccceeccccee-eeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPA-GN-WSPNKQLIGFKKV-HVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~-~~-~~p~~~L~gF~kv-~l~pGes~~V~~~~~~ 373 (415)
..+++|+|+|+ -.-.+|+.+.... .. ..+...|.=+=.+ .|+||++++|+| +..
T Consensus 17 ~~~i~v~N~~~--~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 17 SASITVTNNSD--QPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp EEEEEEEESSS--SEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred EEEEEEEcCCC--CcEEEEEEEEcCCCcccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 57899999998 4678888888621 11 2333345555555 589999999999 544
No 22
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=84.46 E-value=4.9 Score=32.61 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=28.8
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEEEE
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLH 396 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~~ 396 (415)
.++++++|.|+.. .++ .+.. .+ ....|.||++.+++|+-. .+|+|.++
T Consensus 44 ~v~l~~~N~~~~~-h~~---~i~~-----------~~-~~~~l~~g~~~~~~f~~~----------------~~G~y~~~ 91 (104)
T PF13473_consen 44 PVTLTFTNNDSRP-HEF---VIPD-----------LG-ISKVLPPGETATVTFTPL----------------KPGEYEFY 91 (104)
T ss_dssp EEEEEEEE-SSS--EEE---EEGG-----------GT-EEEEE-TT-EEEEEEEE-----------------S-EEEEEB
T ss_pred eEEEEEEECCCCc-EEE---EECC-----------Cc-eEEEECCCCEEEEEEcCC----------------CCEEEEEE
Confidence 4678889998774 111 1111 11 225789999999988533 56999998
Q ss_pred EeCC
Q 014987 397 IGDL 400 (415)
Q Consensus 397 vg~~ 400 (415)
.+-.
T Consensus 92 C~~~ 95 (104)
T PF13473_consen 92 CTMH 95 (104)
T ss_dssp -SSS
T ss_pred cCCC
Confidence 7743
No 23
>PRK13986 urease subunit alpha; Provisional
Probab=83.38 E-value=2 Score=39.71 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=29.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccc-------eecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNK-------QLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~-------~L~gF~kv~l~pGes~~V~~~ 370 (415)
=+++++|+|||+|+ ||+=-+.+.-. ..... ..-.=+-|..+||++++|++.
T Consensus 125 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 187 (225)
T PRK13986 125 KAVSVKVKNVGDRP----VQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELI 187 (225)
T ss_pred cEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36889999999998 56521111110 11111 111224467899999999874
No 24
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=83.20 E-value=9.5 Score=30.05 Aligned_cols=47 Identities=26% Similarity=0.366 Sum_probs=31.4
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.+.++++|.|+.+ -.++||-.. +....| .++.|+||++.++.+.+..
T Consensus 21 ~l~l~l~N~g~~~--~~~~v~~~~-y~~~~~-------~~~~v~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 21 NLRLTLSNPGSAA--VTFTVYDNA-YGGGGP-------WTYTVAAGQTVSLTWPLAA 67 (89)
T ss_pred EEEEEEEeCCCCc--EEEEEEeCC-cCCCCC-------EEEEECCCCEEEEEEeecC
Confidence 6889999987543 345555422 221233 5578999999999998843
No 25
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=82.92 E-value=2.8 Score=33.90 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=30.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCC---C---C-CCcc-----ceecccceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPA---G---N-WSPN-----KQLIGFKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~---~---~-~~p~-----~~L~gF~kv~l~pGes~~V~~~ 370 (415)
-+++++|.|||+|+ +|+=-+... . . +|.. -..-.=+-|..+||+.++|++.
T Consensus 20 ~~~~i~V~NtGDRP----IQVGSHfHF~EvN~aL~FDR~~a~G~RLdIpagTAVRFEPG~~k~V~LV 82 (106)
T COG0832 20 PTVTIEVANTGDRP----IQVGSHFHFFEVNRALSFDREKAYGMRLDIPAGTAVRFEPGDEKEVELV 82 (106)
T ss_pred cceEEEEeecCCCc----eEeecceeehhhCcceeechhhhcceEecccCCceEeeCCCCccEEEEE
Confidence 57888899999998 675211111 0 0 1110 0122234567899999999874
No 26
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=82.36 E-value=2.4 Score=38.80 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=29.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccceecc-------cceeeeCCCCEEEEEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIG-------FKKVHVTAGALQSVRLD 370 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~L~g-------F~kv~l~pGes~~V~~~ 370 (415)
-+++++|+|+|+|+ ||+=-+.+.-. ....+.=.| =+-|..+||++++|++.
T Consensus 129 ~~~~l~V~NtGDRP----IQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 129 PAVTLDVTNTGDRP----IQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CEEEEEEEeCCCCc----eeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEE
Confidence 36899999999998 56521111110 111111112 23467799999999874
No 27
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=81.22 E-value=3.8 Score=34.74 Aligned_cols=53 Identities=28% Similarity=0.490 Sum_probs=31.7
Q ss_pred EEEEEEEeCCCCC----cceEEEEeeeCCCC---------------CCCcc--ceecccceeeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMA----GTHTLLVFAKPPAG---------------NWSPN--KQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~----G~evvQlY~~~~~~---------------~~~p~--~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
+++|+.+|+|.++ |--.|- ..+.. .-.|. .+..+.+|+ |.|||+.+|+|+.+.
T Consensus 26 ~vtv~l~h~G~lpk~~MgHN~Vl---~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkl-iggGes~svtF~~~~ 99 (125)
T TIGR02695 26 EFTVNLKHTGKLPKAVMGHNWVL---AKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKV-IGGGEKTSVTFDVSK 99 (125)
T ss_pred EEEEEEecCCcCchhccCccEEE---eccccHHHHHHHHHhcccccCccCCCCcceEEEccc-cCCCceEEEEEECCC
Confidence 6889999999876 444442 11111 00121 233333332 699999999999874
No 28
>COG1470 Predicted membrane protein [Function unknown]
Probab=79.88 E-value=11 Score=38.92 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=42.9
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceeccccee-eeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEE
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKV-HVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 394 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv-~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~ 394 (415)
.++.+.|.|+|+.+=.. +-|=+..|.+= ..+.-.+ +| .|+|||+++|.++|+.-.+ ..+|+|.
T Consensus 399 ~~i~i~I~NsGna~Ltd-Ikl~v~~PqgW---ei~Vd~~-~I~sL~pge~~tV~ltI~vP~~-----------a~aGdY~ 462 (513)
T COG1470 399 KTIRISIENSGNAPLTD-IKLTVNGPQGW---EIEVDES-TIPSLEPGESKTVSLTITVPED-----------AGAGDYR 462 (513)
T ss_pred ceEEEEEEecCCCccce-eeEEecCCccc---eEEECcc-cccccCCCCcceEEEEEEcCCC-----------CCCCcEE
Confidence 57777888888655332 23444445431 1133344 45 5899999999999886211 1679999
Q ss_pred EEEeC
Q 014987 395 LHIGD 399 (415)
Q Consensus 395 ~~vg~ 399 (415)
+.+-.
T Consensus 463 i~i~~ 467 (513)
T COG1470 463 ITITA 467 (513)
T ss_pred EEEEE
Confidence 98774
No 29
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=77.99 E-value=3.6 Score=38.29 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=25.2
Q ss_pred EEEeCCCCCcceEEEEeeeCCCCC---CCc--------cceecccceeeeCCCCEEE
Q 014987 321 DIKNTGDMAGTHTLLVFAKPPAGN---WSP--------NKQLIGFKKVHVTAGALQS 366 (415)
Q Consensus 321 ~V~NtG~~~G~evvQlY~~~~~~~---~~p--------~~~L~gF~kv~l~pGes~~ 366 (415)
+|-|.|. |.-+++||.+.+.+. ..| .+.+...+++.|.||||-|
T Consensus 111 DIINRGG--G~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiT 165 (225)
T PF07385_consen 111 DIINRGG--GNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESIT 165 (225)
T ss_dssp EEEEEEE--S-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEE
T ss_pred heeecCC--ceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEe
Confidence 4567664 778889998876543 222 3458889999999999843
No 30
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=77.92 E-value=19 Score=28.74 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.4
Q ss_pred HHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEE
Q 014987 116 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLV 171 (415)
Q Consensus 116 ~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvV 171 (415)
.....++++|+||++++.- +..-...+++.++..++|++.+
T Consensus 41 ~l~~~i~~aD~VIv~t~~v---------------sH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYV---------------SHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred HHHHhcCCCCEEEEEeCCc---------------ChHHHHHHHHHHHHcCCcEEEE
Confidence 3567789999999998522 3344567788887778886654
No 31
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=75.67 E-value=5.7 Score=39.73 Aligned_cols=53 Identities=17% Similarity=0.431 Sum_probs=29.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------eeeCCCCC---CCccceecccc------eeeeCCCCEEEEEEEeC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLV---------FAKPPAGN---WSPNKQLIGFK------KVHVTAGALQSVRLDIH 372 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQl---------Y~~~~~~~---~~p~~~L~gF~------kv~l~pGes~~V~~~~~ 372 (415)
+++++++|||+|+-+ |+| |+...... ..|. +|.+-+ ..-++|||+++++++++
T Consensus 264 ~l~~~l~VtN~g~~p----v~LgeF~tA~vrFln~~v~~~~~~~P~-~l~A~~gL~vs~~~pI~PGETrtl~V~a~ 334 (381)
T PF04744_consen 264 TLTMTLTVTNNGDSP----VRLGEFNTANVRFLNPDVPTDDPDYPD-ELLAERGLSVSDNSPIAPGETRTLTVEAQ 334 (381)
T ss_dssp EEEEEEEEEEESSS-----BEEEEEESSS-EEE-TTT-SS-S---T-TTEETT-EEES--S-B-TT-EEEEEEEEE
T ss_pred EEEEEEEEEcCCCCc----eEeeeEEeccEEEeCcccccCCCCCch-hhhccCcceeCCCCCcCCCceEEEEEEee
Confidence 799999999999644 444 22211111 2333 444432 22489999999999985
No 32
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=75.67 E-value=11 Score=31.71 Aligned_cols=57 Identities=26% Similarity=0.293 Sum_probs=36.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC------------------CCccceecccce-eeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN------------------WSPNKQLIGFKK-VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~------------------~~p~~~L~gF~k-v~l~pGes~~V~~~~~~ 373 (415)
..++++.|+|+++-+- .+++++..-.+. ..+..+|+...+ |.|+|+|+++|+|+|.-
T Consensus 28 ~~~l~v~i~N~s~~~~--tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~~~Vtl~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 28 KQTLEVRITNNSDKEI--TVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIPKEVTLPPNESKTVTFTIKM 103 (121)
T ss_pred EEEEEEEEEeCCCCCE--EEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCCcEEEECCCCEEEEEEEEEc
Confidence 5688999999887543 344443321110 123444555444 68999999999999876
No 33
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=73.01 E-value=10 Score=30.76 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeee--CCCCCCCcc-ceecccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAK--PPAGNWSPN-KQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~--~~~~~~~p~-~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.++++++++|..+..-+. |++.+. .-...+.+. ...+-...+.|+|||++++++++.+
T Consensus 16 d~~v~v~~~N~~~~~l~~-v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p 76 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRN-VSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTITP 76 (107)
T ss_dssp EEEEEEEEEE-SSS-EEC-EEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-H
T ss_pred CEEEEEEEEeCCcCcccc-ceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEEc
Confidence 599999999999877333 233322 111223332 2344455567999999999999987
No 34
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=72.67 E-value=13 Score=32.38 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=39.8
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceee-eCCCCEEEEEEEeCC
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVH-VTAGALQSVRLDIHV 373 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~-l~pGes~~V~~~~~~ 373 (415)
+.|.+..+|+++. ++--+-+..+. -..-.++.+|.+|. |+||++.++.+-|+-
T Consensus 87 vsIql~ftN~s~~---~i~~I~i~~k~--l~~g~~i~~F~~I~~L~pg~s~t~~lgIDF 140 (145)
T PF14796_consen 87 VSIQLTFTNNSDE---PIKNIHIGEKK--LPAGMRIHEFPEIESLEPGASVTVSLGIDF 140 (145)
T ss_pred EEEEEEEEecCCC---eecceEECCCC--CCCCcEeeccCcccccCCCCeEEEEEEEec
Confidence 7899999999974 33334455443 12334799999996 999999999998876
No 35
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=71.43 E-value=46 Score=27.23 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=30.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEe-ee--CC--CCC---CCc---c--ceecccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVF-AK--PP--AGN---WSP---N--KQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY-~~--~~--~~~---~~p---~--~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
..+.+++|+|.|+.+=.--+... +. .. ... ..+ . .....=.++.|+||++++|+++++.
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~ag~s~~v~vti~~ 80 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPAGQSKTVTVTITP 80 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-TTEEEEEEEEEE-
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECCCCEEEEEEEEEe
Confidence 46889999999986644333322 11 11 111 111 1 1222334567899999999999987
No 36
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=67.33 E-value=22 Score=30.09 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=38.0
Q ss_pred EEEEEEEEeCCCC----CcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 316 LGLHVDIKNTGDM----AGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 316 ~~vsv~V~NtG~~----~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
-.+.+++||+|+. .|-=-|++.-..-..- ....++-..=+.+.|+||++....|.+..
T Consensus 20 ~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 20 RHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred cEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 4788999999985 5666666662221100 11222223556788999999999998876
No 37
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.72 E-value=39 Score=34.93 Aligned_cols=125 Identities=22% Similarity=0.189 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccccCCCcccCHHHHHhhhcc-ee-eeecc
Q 014987 26 PAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAK-TI-HQAGC 103 (415)
Q Consensus 26 ~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~~-~~-~~~g~ 103 (415)
.+-.++-+++.+|+.- +.+.-+||..- .++|+||.....+. ...+...++++.+ +. +...+
T Consensus 108 ~~~~~lk~~L~~eGlf---d~~~k~~lP~~-p~~I~viTs~~gAa-------------~~D~~~~~~~r~p~~~~~~~~~ 170 (438)
T PRK00286 108 AAFEQLKEKLAAEGLF---DPERKKPLPFF-PKRIGVITSPTGAA-------------IRDILTVLRRRFPLVEVIIYPT 170 (438)
T ss_pred HHHHHHHHHHHHCCCC---ChhhcCCCCCC-CCEEEEEeCCccHH-------------HHHHHHHHHhcCCCCeEEEecC
Confidence 3456788889999974 33333455332 26999986543221 1234445554433 11 11111
Q ss_pred Cccc-cCCccchHHHHHHhhc--CCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 104 FGVA-CNGNQLIGAAEVAARQ--ADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 104 ~~~~-~~~~~~~~~a~~~a~~--aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++ ......+.++.+.+.. .|++|++=| |+...+|. +=++.++++++++ +..|||.-+ |.=.|.
T Consensus 171 -~vQG~~A~~~i~~al~~~~~~~~Dviii~RG--------GGS~eDL~-~Fn~e~v~~ai~~-~~~Pvis~I--GHE~D~ 237 (438)
T PRK00286 171 -LVQGEGAAASIVAAIERANARGEDVLIVARG--------GGSLEDLW-AFNDEAVARAIAA-SRIPVISAV--GHETDF 237 (438)
T ss_pred -cCcCccHHHHHHHHHHHhcCCCCCEEEEecC--------CCCHHHhh-ccCcHHHHHHHHc-CCCCEEEec--cCCCCc
Confidence 010 1112344455555544 599998865 22222221 1245678899986 678866433 655544
No 38
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=60.47 E-value=59 Score=33.68 Aligned_cols=124 Identities=19% Similarity=0.152 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhCeEEEecCCCCCCCcCCCCCeEEEEccCCCcccccccccccCCCcccCHHHHHhhhcc---eeeeec
Q 014987 26 PAHQQLALQAAHQGIVLLKNSARTLPLSTLRHHTVAVIGPNSDVTVTMIGNYAGVACGYTTPLQGISRYAK---TIHQAG 102 (415)
Q Consensus 26 ~~h~~la~~~a~esivLLKN~~~~LPL~~~~~~~V~viG~~a~~~~~~~G~~~g~~~~~~t~~~~l~~~~~---~~~~~g 102 (415)
.+-.++-+++++|++-=... ..-||.-| ++|+||.....+. ...+...++++.+ +.+. .
T Consensus 102 ~~~~~lk~~L~~eGlfd~~~-k~~lP~~p---~~i~vits~~~aa-------------~~D~~~~~~~r~p~~~~~~~-~ 163 (432)
T TIGR00237 102 LAYEQLKEKLAAEGLFDQEY-KKPLPHFP---KRVGVITSQTGAA-------------LADILHILKRRDPSLKVVIY-P 163 (432)
T ss_pred HHHHHHHHHHHHCCCCCchh-cCCCCCCC---CEEEEEeCCccHH-------------HHHHHHHHHhhCCCceEEEe-c
Confidence 34567888999999763322 23455443 6899986543221 1234555555433 1111 1
Q ss_pred cCccc-cCCccchHHHHHHhh---cCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCcee
Q 014987 103 CFGVA-CNGNQLIGAAEVAAR---QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPV 178 (415)
Q Consensus 103 ~~~~~-~~~~~~~~~a~~~a~---~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~ 178 (415)
+ .++ ......+..+.+.+. +.|++|++=|. ....+|. +=++..+.+++++ +..|||.-+ |.=.
T Consensus 164 ~-~vQG~~a~~~i~~al~~~~~~~~~dviii~RGG--------Gs~eDL~-~Fn~e~~~rai~~-~~~Pvis~i--GHe~ 230 (432)
T TIGR00237 164 T-LVQGEGAVQSIVESIELANTKNECDVLIVGRGG--------GSLEDLW-SFNDEKVARAIFL-SKIPIISAV--GHET 230 (432)
T ss_pred c-cccCccHHHHHHHHHHHhhcCCCCCEEEEecCC--------CCHHHhh-hcCcHHHHHHHHc-CCCCEEEec--CcCC
Confidence 1 000 011233344444333 36999998652 2222221 1245568889985 678866433 6655
Q ss_pred ec
Q 014987 179 DV 180 (415)
Q Consensus 179 ~l 180 (415)
|.
T Consensus 231 D~ 232 (432)
T TIGR00237 231 DF 232 (432)
T ss_pred Cc
Confidence 54
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=59.85 E-value=24 Score=36.42 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 115 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 115 ~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
+++..++.+||++|+++-.. -.+.+...++.+.|. ..++|+|+|++
T Consensus 75 ~Qa~~Ai~eADvilfvVD~~------------~Git~~D~~ia~~Lr-~~~kpviLvvN 120 (444)
T COG1160 75 EQALIAIEEADVILFVVDGR------------EGITPADEEIAKILR-RSKKPVILVVN 120 (444)
T ss_pred HHHHHHHHhCCEEEEEEeCC------------CCCCHHHHHHHHHHH-hcCCCEEEEEE
Confidence 45667889999999998321 234455555666665 45689999987
No 40
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=59.64 E-value=43 Score=29.86 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=25.9
Q ss_pred chHHHHHHh--hcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 113 LIGAAEVAA--RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 113 ~~~~a~~~a--~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.+++.+.+ ..+|+++|++|. +.|..++.+.....+.+ | ++..|..+++
T Consensus 89 ~~~~i~~~I~~~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~-v-~i~vG~~~d~ 139 (172)
T PF03808_consen 89 EEEAIINRINASGPDIVFVGLGA-----------------PKQERWIARHRQRLPAG-V-IIGVGGAFDF 139 (172)
T ss_pred hHHHHHHHHHHcCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC-E-EEEECchhhh
Confidence 334444443 345777777763 34666776665544433 2 2333665554
No 41
>PF09544 DUF2381: Protein of unknown function (DUF2381); InterPro: IPR011754 This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=59.58 E-value=88 Score=30.58 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=48.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceec-ccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEE
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEH 393 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~-gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~ 393 (415)
.+-+.|+|+|...-.-=..-+..+..+. +.+.|.+. -++.=.|.||++..|-+.... ..++ ..|.|
T Consensus 203 ~vav~v~l~N~~g~~PW~~~~A~L~g~~--G~~lr~~~V~~~~~~i~PG~~grVvVe~e~-~~~~----------~~~~f 269 (289)
T PF09544_consen 203 WVAVVVTLRNLSGQPPWTPGEARLTGPS--GEPLRALAVRWQEGPIAPGGSGRVVVEAEA-PAFS----------AGGPF 269 (289)
T ss_pred eEEEEEEEECCCCCCCceeeEEEEECCC--CCcceeeeeecccCccCCCCceeEEEEecC-CCcC----------CCCcE
Confidence 4789999999554333444466666554 34444433 377778999999999999986 4433 33777
Q ss_pred EEEEeC
Q 014987 394 SLHIGD 399 (415)
Q Consensus 394 ~~~vg~ 399 (415)
++.+-+
T Consensus 270 tLel~~ 275 (289)
T PF09544_consen 270 TLELWD 275 (289)
T ss_pred EEEEEc
Confidence 777665
No 42
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=58.61 E-value=27 Score=30.28 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=36.1
Q ss_pred eEEEEEEEEeCCCCCcceEE-E--EeeeCCCCC---CCccceeccccee------eeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTL-L--VFAKPPAGN---WSPNKQLIGFKKV------HVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evv-Q--lY~~~~~~~---~~p~~~L~gF~kv------~l~pGes~~V~~~~~~ 373 (415)
.+.|..+|||+|++.=+.+. + ++-...... ..=..++.+|.+. .|+|||++.-++.++.
T Consensus 63 ~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~~~~ 133 (149)
T PF09624_consen 63 SFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFIFPY 133 (149)
T ss_pred EEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEEecC
Confidence 68999999999987644331 1 221110111 1223445556322 2899999999998875
No 43
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=58.46 E-value=9.4 Score=37.92 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=33.4
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCCh--hhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~--~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++++|+||+..|... .++.+|.++--.. --+++++++.+.+.+..++++. +||.|+
T Consensus 74 ~~~~~daDvVVitAG~~~---k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv 134 (323)
T TIGR01759 74 EEAFKDVDAALLVGAFPR---KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANT 134 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 467889999999998653 3344443221110 1234455665533324555554 899976
No 44
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.85 E-value=58 Score=29.00 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=26.0
Q ss_pred hcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 122 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 122 ~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
..+|+|+|++|. +.|..++.+.....+.+ +++..|..++.
T Consensus 98 ~~pdiv~vglG~-----------------PkQE~~~~~~~~~l~~~--v~~~vG~~~d~ 137 (171)
T cd06533 98 SGADILFVGLGA-----------------PKQELWIARHKDRLPVP--VAIGVGGSFDF 137 (171)
T ss_pred cCCCEEEEECCC-----------------CHHHHHHHHHHHHCCCC--EEEEeceeeEe
Confidence 457999999873 35778888876544333 33334777765
No 45
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=54.70 E-value=8.4 Score=38.10 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCC-EEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGP-VVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~p-vVvVl~~g~P~~l 180 (415)
++++++|+||++.|... .++.+|..+ =... ++++.++.+. ..| .++++ .+||.++
T Consensus 56 ~~~~daDiVVitaG~~~---k~g~tR~dl--l~~N~~I~~~i~~~i~~~-a~~~~iviv-vtNPvDv 115 (313)
T TIGR01756 56 EAFKDIDCAFLVASVPL---KPGEVRADL--LTKNTPIFKATGEALSEY-AKPTVKVLV-IGNPVNT 115 (313)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHhh-CCCCeEEEE-eCCchHH
Confidence 57889999999988653 234444321 1112 2344455543 335 44444 4899976
No 46
>PLN02303 urease
Probab=51.77 E-value=20 Score=39.91 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=30.2
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-----CCccceecc-------cceeeeCCCCEEEEEEE
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-----WSPNKQLIG-------FKKVHVTAGALQSVRLD 370 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-----~~p~~~L~g-------F~kv~l~pGes~~V~~~ 370 (415)
+++++|+|||+|+ ||+=-+.+.-. ..-...=.| =+-|..+||++++|++.
T Consensus 151 ~~~l~v~n~gdrp----iqvgSH~hf~e~N~aL~FdR~~a~G~rLdipaGtavRfePG~~~~V~lv 212 (837)
T PLN02303 151 AVKLKVTNTGDRP----IQVGSHYHFIETNPYLVFDRRKAYGMRLNIPAGTAVRFEPGETKTVTLV 212 (837)
T ss_pred eEEEEEeeCCCCc----eEeccccchHhcCchhhccHHHhcCccccCCCCCeEeECCCCeeEEEEE
Confidence 6889999999998 66522211110 111111112 23467899999999985
No 47
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.81 E-value=1e+02 Score=27.85 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=39.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEee-eCCCCCCCccceecccce---eeeCCCCEEEEEEEeCCCCCeeEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFA-KPPAGNWSPNKQLIGFKK---VHVTAGALQSVRLDIHVCKHLSVVDKF 383 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~-~~~~~~~~p~~~L~gF~k---v~l~pGes~~V~~~~~~~~~ls~~d~~ 383 (415)
.++|+++|.|.|+-+..+ |++.- ..|... -.-..|-.. -.|+||++.+-++.|.+ .....++-.
T Consensus 39 ~v~V~~~iyN~G~~~A~d-V~l~D~~fp~~~---F~lvsG~~s~~~~~i~pg~~vsh~~vv~p-~~~G~f~~~ 106 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAAYD-VKLTDDSFPPED---FELVSGSLSASWERIPPGENVSHSYVVRP-KKSGYFNFT 106 (181)
T ss_pred EEEEEEEEEECCCCeEEE-EEEECCCCCccc---cEeccCceEEEEEEECCCCeEEEEEEEee-eeeEEEEcc
Confidence 699999999999865433 33433 222221 011222111 25899999999999998 666666544
No 48
>PLN00135 malate dehydrogenase
Probab=50.49 E-value=15 Score=36.25 Aligned_cols=59 Identities=15% Similarity=0.253 Sum_probs=32.6
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCC--hhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLP--GRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~--~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||+..|... ..+.+|..+-.. .--+++++++.+..+...++++. +||.++
T Consensus 53 y~~~~daDiVVitAG~~~---k~g~sR~dll~~N~~I~~~i~~~i~~~~~p~aivivv-sNPvDv 113 (309)
T PLN00135 53 VEACKGVNIAVMVGGFPR---KEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVV-ANPANT 113 (309)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-CCcHHH
Confidence 367889999999998654 223344321100 01234455565422344555544 899976
No 49
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=49.73 E-value=72 Score=31.32 Aligned_cols=46 Identities=22% Similarity=0.273 Sum_probs=27.0
Q ss_pred cCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 123 QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 123 ~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+|++|++=| |+...+|. +=+..++.+++++ +..|||.-+ |.=.|.
T Consensus 75 ~~Dviii~RG--------GGs~eDL~-~FN~e~varai~~-~~~PvisaI--GHe~D~ 120 (319)
T PF02601_consen 75 DFDVIIIIRG--------GGSIEDLW-AFNDEEVARAIAA-SPIPVISAI--GHETDF 120 (319)
T ss_pred cccEEEEecC--------CCChHHhc-ccChHHHHHHHHh-CCCCEEEec--CCCCCc
Confidence 4799988855 22222221 1245678899986 678865433 655444
No 50
>PRK05442 malate dehydrogenase; Provisional
Probab=49.55 E-value=17 Score=36.13 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.+++||+||++.|... .++.+|.++ -... +++++++.+..+...++++ .+||.|+
T Consensus 75 y~~~~daDiVVitaG~~~---k~g~tR~dl--l~~Na~i~~~i~~~i~~~~~~~~iiiv-vsNPvDv 135 (326)
T PRK05442 75 NVAFKDADVALLVGARPR---GPGMERKDL--LEANGAIFTAQGKALNEVAARDVKVLV-VGNPANT 135 (326)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHHhCCCCeEEEE-eCCchHH
Confidence 467889999999988543 234444321 1122 2344455542322344444 4899976
No 51
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=48.19 E-value=18 Score=35.80 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=34.0
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCC-CC-hhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLL-LP-GRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~-l~-~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+..+.+|+||++.|.++ ..|.+|.+|- -+ .-..++.+++.+.+ ...++++. +||.++
T Consensus 64 y~~~~~aDiVvitAG~pr---KpGmtR~DLl~~Na~I~~~i~~~i~~~~-~d~ivlVv-tNPvD~ 123 (313)
T COG0039 64 YEDLKGADIVVITAGVPR---KPGMTRLDLLEKNAKIVKDIAKAIAKYA-PDAIVLVV-TNPVDI 123 (313)
T ss_pred hhhhcCCCEEEEeCCCCC---CCCCCHHHHHHhhHHHHHHHHHHHHhhC-CCeEEEEe-cCcHHH
Confidence 466789999999998665 3344553321 11 11234455665533 34555554 999886
No 52
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.17 E-value=17 Score=36.09 Aligned_cols=57 Identities=23% Similarity=0.376 Sum_probs=32.5
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||++.|... .++.+|..+ -... +++..++.+..+...++++. +||.++
T Consensus 71 ~~~~~~aDiVVitAG~~~---~~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 131 (323)
T cd00704 71 EEAFKDVDVAILVGAFPR---KPGMERADL--LRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANT 131 (323)
T ss_pred HHHhCCCCEEEEeCCCCC---CcCCcHHHH--HHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHH
Confidence 467889999999988653 223344321 1112 34445555432344555554 899975
No 53
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=48.07 E-value=1.7e+02 Score=25.53 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=32.2
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCcc-ceecccceeeeCCCCEEEEEEEeCC
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPN-KQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~-~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
+.+.|+|+- ....|++|...-... ..|- -.-+.-=...|.|||+..|=|.++.
T Consensus 70 ~~IcV~I~s-----~~~~i~fy~~~~~~~~~~~~sd~a~~~i~ftv~~ge~v~VGm~~~~ 124 (146)
T PF06510_consen 70 VPICVTISS-----SSDSIEFYTGDYDSYITGPGSDSARQSICFTVEPGESVKVGMIFDS 124 (146)
T ss_pred ceEEEEEec-----CCCcEEEEecCCCccccCCccccccceEEEEecCCCeeEEEEEEec
Confidence 677888872 256789998543322 2221 1111111235899999999999886
No 54
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=46.75 E-value=15 Score=38.13 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=31.8
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+..+++|+||+..|... .++.+|.++ =... +++.+++.+..+...++++ .+||.|+
T Consensus 171 ye~~kdaDiVVitAG~pr---kpG~tR~dL--l~~N~~I~k~i~~~I~~~a~p~~ivIV-VsNPvDv 231 (444)
T PLN00112 171 YEVFQDAEWALLIGAKPR---GPGMERADL--LDINGQIFAEQGKALNEVASRNVKVIV-VGNPCNT 231 (444)
T ss_pred HHHhCcCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhcCCCeEEEE-cCCcHHH
Confidence 367889999999988654 334444322 1111 2334455441233445444 4899876
No 55
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=46.67 E-value=16 Score=37.25 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=30.8
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHH----HHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li----~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||++.|... .++.+|.+ +-....+++ +.+.+..+...+++ +.+||.++
T Consensus 115 y~~~kdaDIVVitAG~pr---kpg~tR~d--ll~~N~~I~k~i~~~I~~~a~~~~ivi-VVsNPvDv 175 (387)
T TIGR01757 115 YEVFEDADWALLIGAKPR---GPGMERAD--LLDINGQIFADQGKALNAVASKNCKVL-VVGNPCNT 175 (387)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEE-EcCCcHHH
Confidence 367899999999988653 22334422 111222333 34443222334444 45899976
No 56
>PF08530 PepX_C: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; InterPro: IPR013736 This domain is found at the C terminus of cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). The domain, which is a beta sandwich, is also found in serine peptidases belonging to MEROPS peptidase family S15: Xaa-Pro dipeptidyl-peptidases. Members of this entry, that are not characterised as peptidases, show extensive low-level similarity to the Xaa-Pro dipeptidyl-peptidases. ; GO: 0008239 dipeptidyl-peptidase activity; PDB: 2B4K_D 1RYY_F 2B9V_O 1NX9_B 3PUH_B 3I2I_A 3I2G_A 1JU4_A 3I2K_A 1L7R_A ....
Probab=46.50 E-value=88 Score=28.69 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=29.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccce----------eeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----------VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~k----------v~l~pGes~~V~~~~~~ 373 (415)
..++++.|+=++. ++.=+|+|+--.|.+..+.+-. |.-| ..|+|||..+++|+|.+
T Consensus 97 ~~~l~L~vs~~~~-d~~l~v~L~dv~pdG~~~~it~--G~l~~s~r~~~~~~~~~~pg~~~~~~i~L~p 162 (218)
T PF08530_consen 97 PPSLRLWVSSDAP-DADLFVRLSDVDPDGTSTLITR--GWLRASHRESDEKPEPLEPGEPYDVTIELQP 162 (218)
T ss_dssp EEEEEEEEEESSS-S-EEEEEEEEEETTSSEEEEEE--EEEEGGGSSCSSST----TT-EEEEEEEEEE
T ss_pred ceEEEEEEEecCC-CcEEEEEEEEeCCCCCEEEccc--eEEEcccccCccccccCCCCcEEEEEEEEch
Confidence 3556666654443 4466666665566653222111 2222 35899999999999876
No 57
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=45.45 E-value=1.2e+02 Score=23.59 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=39.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDK 382 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~ 382 (415)
.+.+.+++.|.+.....-.+++.+....... ....-..+.+..++...+.+++.. .....|+.
T Consensus 19 ~v~v~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i-~~~~lW~p 81 (110)
T PF00703_consen 19 KVSVEVEVRNESNKPLDVTVRVRLFDPEGKK----VVTQSPVVSLSAPGQARITLTIEI-PNPKLWSP 81 (110)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEEEEETTSEE----EEEEEEEEEECCCCEEEEEEEEEE-ESS-BBES
T ss_pred EEEEEEEEEeCCCCcEEEEEEEEEECCCCCE----EEEeeeEEEecCCceeEEEEEEEc-CCCCCcCC
Confidence 5777778899999998888988888765421 111222234566666665444444 44566766
No 58
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=44.82 E-value=7.8 Score=33.48 Aligned_cols=55 Identities=24% Similarity=0.413 Sum_probs=29.5
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHH----HHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~----li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.++++|+||++.|... .++.+|..+ =....+ +.+++.+.+. ..++++. .||.++
T Consensus 65 ~~~~~aDivvitag~~~---~~g~sR~~l--l~~N~~i~~~~~~~i~~~~p-~~~vivv-tNPvd~ 123 (141)
T PF00056_consen 65 EALKDADIVVITAGVPR---KPGMSRLDL--LEANAKIVKEIAKKIAKYAP-DAIVIVV-TNPVDV 123 (141)
T ss_dssp GGGTTESEEEETTSTSS---STTSSHHHH--HHHHHHHHHHHHHHHHHHST-TSEEEE--SSSHHH
T ss_pred cccccccEEEEeccccc---cccccHHHH--HHHhHhHHHHHHHHHHHhCC-ccEEEEe-CCcHHH
Confidence 46789999999988653 233333221 122223 3345554443 3344443 899875
No 59
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=44.74 E-value=39 Score=24.39 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=18.7
Q ss_pred eecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEEEEEe
Q 014987 350 QLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 398 (415)
Q Consensus 350 ~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~~vg 398 (415)
+|.||.+-+...+.... .++.+. +++|+|+|.|-
T Consensus 13 ~l~g~d~~W~~~~~~~~-~~~~~~--------------L~~G~Y~l~V~ 46 (66)
T PF07495_consen 13 RLEGFDDEWITLGSYSN-SISYTN--------------LPPGKYTLEVR 46 (66)
T ss_dssp EEETTESSEEEESSTS--EEEEES----------------SEEEEEEEE
T ss_pred EEECCCCeEEECCCCcE-EEEEEe--------------CCCEEEEEEEE
Confidence 46777766654444431 222222 37899999876
No 60
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=44.62 E-value=21 Score=35.44 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhH----HHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~----~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||++.|... .++.+|.++ -.... ++..++.+......++++ .+||.++
T Consensus 73 ~~~~~daDivvitaG~~~---k~g~tR~dl--l~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~ 133 (322)
T cd01338 73 NVAFKDADWALLVGAKPR---GPGMERADL--LKANGKIFTAQGKALNDVASRDVKVLV-VGNPCNT 133 (322)
T ss_pred HHHhCCCCEEEEeCCCCC---CCCCcHHHH--HHHHHHHHHHHHHHHHhhCCCCeEEEE-ecCcHHH
Confidence 467889999999998654 233344322 12222 334455443212444444 4899976
No 61
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=44.47 E-value=22 Score=28.18 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=16.3
Q ss_pred CccceecccceeeeCCCCEEEEEEEeCC
Q 014987 346 SPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 346 ~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.|.--|+- ++.|+|||+++|.|-+-.
T Consensus 59 Dpc~al~~--~v~L~PGe~~~v~f~lG~ 84 (90)
T PF06205_consen 59 DPCAALQV--RVTLEPGEEKEVVFLLGA 84 (90)
T ss_dssp -EEEEEEE--EEEE-TT-EEEEEEEEEE
T ss_pred CeEEEEEE--EEEECCCCEEEEEEEEEE
Confidence 34434443 578999999999998754
No 62
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=43.97 E-value=51 Score=27.96 Aligned_cols=18 Identities=11% Similarity=0.060 Sum_probs=14.6
Q ss_pred hHHHHHHhhcCCEEEEEc
Q 014987 114 IGAAEVAARQADATVLVM 131 (415)
Q Consensus 114 ~~~a~~~a~~aD~vIv~~ 131 (415)
+.++.+.++.+|++|+++
T Consensus 2 ~~~~~~~i~~aD~vl~Vi 19 (141)
T cd01857 2 WRQLWRVVERSDIVVQIV 19 (141)
T ss_pred HHHHHHHHhhCCEEEEEE
Confidence 356778899999998887
No 63
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=42.35 E-value=48 Score=26.74 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=12.9
Q ss_pred eEEEEEEEEeCCCCC
Q 014987 315 SLGLHVDIKNTGDMA 329 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~ 329 (415)
.+...|+|+|.|+.+
T Consensus 14 Gf~~~v~v~N~~~~~ 28 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSP 28 (101)
T ss_dssp EEEEEEEEEESSSST
T ss_pred CeEEEEEEEECCCCc
Confidence 489999999999865
No 64
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=42.23 E-value=44 Score=33.59 Aligned_cols=54 Identities=20% Similarity=0.447 Sum_probs=32.3
Q ss_pred eEEEEEEEEeCCCCCcceEEEE---------eeeC---CCCC-CCccceec--ccc---eeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLV---------FAKP---PAGN-WSPNKQLI--GFK---KVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQl---------Y~~~---~~~~-~~p~~~L~--gF~---kv~l~pGes~~V~~~~~~ 373 (415)
.++++++|||.|+-+ |.| |+.. +... ..|. +|. |.+ ...++|||+++|+++..-
T Consensus 283 ~l~~~~~VTN~g~~~----vrlgEF~TA~vRFlN~~~v~~~~~~yP~-~lla~GL~v~d~~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 283 ALRVTMEITNNGDQV----ISIGEFTTAGIRFMNANGVRVLDPDYPR-ELLAEGLEVDDQSAIAPGETVEVKMEAKD 354 (399)
T ss_pred EEEEEEEEEcCCCCc----eEEEeEeecceEeeCcccccccCCCChH-HHhhccceeCCCCCcCCCcceEEEEEEeh
Confidence 689999999999643 333 2221 0011 2332 222 222 224899999999998764
No 65
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=41.16 E-value=74 Score=30.40 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccc----eeccccee-eeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNK----QLIGFKKV-HVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~----~L~gF~kv-~l~pGes~~V~~~~~ 372 (415)
.++++|+|+|+. .-.||..+........|.. .+.-.-=+ .|+||+.++|+|-..
T Consensus 45 ~~sl~l~N~~~~--p~LvQsWv~~~~~~~~p~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 103 (253)
T PRK15249 45 SVDVQLKNNDAI--PYIVQTWFDDGDMNTSPENSSAMPFIATPPVFRIQPKAGQVVRVIYN 103 (253)
T ss_pred ceeEEEEcCCCC--cEEEEEEEeCCCCCCCccccccCcEEEcCCeEEecCCCceEEEEEEc
Confidence 578889999986 5999999864322122211 13333333 489999999987644
No 66
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.23 E-value=29 Score=34.23 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=31.5
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHH----HHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELV----SRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li----~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.+++||+||++.|... ..+.+|..+.|=....+++ +++.+. +...+++ +..||.|+
T Consensus 63 y~~~~~aDivvitaG~~~---kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~i-vvsNPvDv 124 (307)
T cd05290 63 YDDCADADIIVITAGPSI---DPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVII-LITNPLDI 124 (307)
T ss_pred HHHhCCCCEEEECCCCCC---CCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE-EecCcHHH
Confidence 467899999999988643 1222321122222333344 445443 3344444 45999876
No 67
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=40.21 E-value=1.1e+02 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=20.4
Q ss_pred eeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEEEEEe
Q 014987 357 VHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 398 (415)
Q Consensus 357 v~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~~vg 398 (415)
-.|+|||+++++|+... +|.|.++++
T Consensus 94 ~~I~pGet~TitF~adK----------------pG~Y~y~C~ 119 (135)
T TIGR03096 94 EVIKAGETKTISFKADK----------------AGAFTIWCQ 119 (135)
T ss_pred eEECCCCeEEEEEECCC----------------CEEEEEeCC
Confidence 35899999999998764 577777766
No 68
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=40.17 E-value=33 Score=33.86 Aligned_cols=56 Identities=25% Similarity=0.351 Sum_probs=31.8
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++++|+||++.|... ..+.+|..+ =... ++.++.+.+. +...+++ +..||.|+
T Consensus 62 ~~~~~daDivvitaG~~~---~~g~~R~dl--l~~N~~I~~~i~~~i~~~-~p~~iii-vvsNPvDv 121 (312)
T TIGR01772 62 ENALKGADVVVIPAGVPR---KPGMTRDDL--FNVNAGIVKDLVAAVAES-CPKAMIL-VITNPVNS 121 (312)
T ss_pred HHHcCCCCEEEEeCCCCC---CCCccHHHH--HHHhHHHHHHHHHHHHHh-CCCeEEE-EecCchhh
Confidence 357899999999998654 234444322 1222 2334455543 3344444 45999983
No 69
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=40.04 E-value=82 Score=29.93 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=33.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccce---eccccee-eeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQ---LIGFKKV-HVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~---L~gF~kv-~l~pGes~~V~~~~~ 372 (415)
.+++.|+|+|+. ...||..+........|... +.-.--+ .|+||+.+.|+|-..
T Consensus 42 ~~sv~l~N~~~~--p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl~p~~~q~lRIi~~ 99 (246)
T PRK09926 42 DVNVRLENKGNN--PLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRIDPKRGQTIKLMYT 99 (246)
T ss_pred eEEEEEEeCCCC--cEEEEEEecCCCCccCccccCCCEEEcCCeEEECCCCccEEEEEeC
Confidence 578889999986 69999998643221222111 2222222 478999988887644
No 70
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=39.94 E-value=20 Score=35.03 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=32.2
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCCh--hhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPG--RQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~--~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.+++||+||++.|... .++.+|.++-... --+++.+++.+. +.+.+++ +.+||.++
T Consensus 62 ~~l~~aDiVIitag~p~---~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~vi-v~sNP~d~ 120 (300)
T cd00300 62 ADAADADIVVITAGAPR---KPGETRLDLINRNAPILRSVITNLKKY-GPDAIIL-VVSNPVDI 120 (300)
T ss_pred HHhCCCCEEEEcCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEE-EccChHHH
Confidence 57889999999998654 2344443321111 123344555543 3344444 45899876
No 71
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.67 E-value=27 Score=34.69 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=30.9
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++++|+||++.|... ..+.+|.. +-... ++++..+.+..+...++++. +||.++
T Consensus 73 ~~~l~~aDiVI~tAG~~~---~~~~~R~~--l~~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~ 133 (325)
T cd01336 73 EEAFKDVDVAILVGAMPR---KEGMERKD--LLKANVKIFKEQGEALDKYAKKNVKVLVV-GNPANT 133 (325)
T ss_pred HHHhCCCCEEEEeCCcCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHhCCCCeEEEEe-cCcHHH
Confidence 366789999999988653 12223321 11222 23344555432234555554 799876
No 72
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=39.45 E-value=26 Score=34.77 Aligned_cols=57 Identities=21% Similarity=0.335 Sum_probs=31.7
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhH----HHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~----~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++++|+||+..|... .++.+|.. +-.... +++.++.+..+...++++. +||.|+
T Consensus 70 ~~~~~~aDiVVitAG~~~---~~~~tr~~--ll~~N~~i~k~i~~~i~~~~~~~~iiivv-sNPvDv 130 (324)
T TIGR01758 70 AVAFTDVDVAILVGAFPR---KEGMERRD--LLSKNVKIFKEQGRALDKLAKKDCKVLVV-GNPANT 130 (324)
T ss_pred HHHhCCCCEEEEcCCCCC---CCCCcHHH--HHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHH
Confidence 467789999999988653 12323322 112222 3444555432234565554 799976
No 73
>PRK13556 azoreductase; Provisional
Probab=39.15 E-value=79 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.083 Sum_probs=25.1
Q ss_pred HHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHH
Q 014987 115 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 161 (415)
Q Consensus 115 ~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la 161 (415)
++..+.+++||.+|++.= --++.+|..=+.+|+.+.
T Consensus 81 ~~~~~~l~~AD~iVi~~P-----------~yn~~~Pa~LK~~iD~v~ 116 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFP-----------LWNFTIPAVLHTYIDYLN 116 (208)
T ss_pred HHHHHHHHHCCEEEEecc-----------ccccCCcHHHHHHHHHHh
Confidence 455678899999998851 125667776667777765
No 74
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=39.06 E-value=1.1e+02 Score=32.15 Aligned_cols=59 Identities=31% Similarity=0.446 Sum_probs=45.5
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEE
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHS 394 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~ 394 (415)
.+++.++|+-+|++ -|.+||-+..+ +.+++.+..|.-+. +.|+|.|.. +++|.|.
T Consensus 328 ~~~i~ftv~a~g~~----~vta~V~d~~g------~~~~~~~~~v~d~s-~~vtL~Ls~--------------~~AG~y~ 382 (478)
T PRK13211 328 AATLDFTVTATGDM----NVEATVYNHDG------EALGSKSQTVNDGS-QSVSLDLSK--------------LKAGHHM 382 (478)
T ss_pred cEEEEEEEEeccce----EEEEEEEcCCC------CeeeeeeEEecCCc-eeEEEeccc--------------CCCceEE
Confidence 58899999888854 57778777655 78888888887766 888888876 2678888
Q ss_pred EEEe
Q 014987 395 LHIG 398 (415)
Q Consensus 395 ~~vg 398 (415)
|.|-
T Consensus 383 Lvv~ 386 (478)
T PRK13211 383 LVVK 386 (478)
T ss_pred EEEE
Confidence 8655
No 75
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=38.65 E-value=97 Score=29.03 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=33.6
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceeccccee-eeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKV-HVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv-~l~pGes~~V~~~~~ 372 (415)
.++++|+|+|+. .-.||..+...... ..+...+.-.=-+ .|+||+++.++|--.
T Consensus 39 ~~sl~l~N~~~~--p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 39 DASISISNSDNV--PYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred EEEEEEEeCCCC--cEEEEEEeecCCCCCCcCCCCEEEcCCeEEECCCCccEEEEEEC
Confidence 578889999985 68999998753211 0111112222223 588999999987644
No 76
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=38.55 E-value=90 Score=29.32 Aligned_cols=51 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccc-eeeeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFK-KVHVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~-kv~l~pGes~~V~~~~~ 372 (415)
.++++|+|+|+. .-.||..+...... ..| +.-.= -..|+||++++|++-..
T Consensus 41 ~~si~v~N~~~~--p~lvQ~wv~~~~~~~~~~---fivtPPl~rl~pg~~q~vRii~~ 93 (230)
T PRK09918 41 EGSINVKNTDSN--PILLYTTLVDLPEDKSKL---LLVTPPVARVEPGQSQQVRFILK 93 (230)
T ss_pred eEEEEEEcCCCC--cEEEEEEEecCCCCCCCC---EEEcCCeEEECCCCceEEEEEEC
Confidence 578888999975 48889888754321 111 11111 14689999999987643
No 77
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=37.85 E-value=1.6e+02 Score=25.65 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=14.4
Q ss_pred hHHHHHHhhcCCEEEEEcC
Q 014987 114 IGAAEVAARQADATVLVMG 132 (415)
Q Consensus 114 ~~~a~~~a~~aD~vIv~~g 132 (415)
.......+.+||+|+++..
T Consensus 54 y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQD 72 (143)
T ss_pred HHHHHHHHhhCCEEEEEec
Confidence 3455667789999999874
No 78
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=37.73 E-value=97 Score=22.66 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHhhC-CCCEEEEEE
Q 014987 151 GRQQELVSRVAKAS-RGPVVLVLM 173 (415)
Q Consensus 151 ~~q~~li~~la~~~-~~pvVvVl~ 173 (415)
..|..|.+++.... ++|+++|++
T Consensus 32 e~Q~~L~~~ik~~F~~~P~i~V~n 55 (58)
T PF06858_consen 32 EEQLSLFKEIKPLFPNKPVIVVLN 55 (58)
T ss_dssp HHHHHHHHHHHHHTTTS-EEEEE-
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEe
Confidence 57889999997655 789888865
No 79
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=37.03 E-value=66 Score=26.26 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=27.2
Q ss_pred eEEEEEEEEeCCCCCcce-EEEEeeeCCCCC-CCccce----ecccceeeeCCCCEEEEEE--EeCC
Q 014987 315 SLGLHVDIKNTGDMAGTH-TLLVFAKPPAGN-WSPNKQ----LIGFKKVHVTAGALQSVRL--DIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~e-vvQlY~~~~~~~-~~p~~~----L~gF~kv~l~pGes~~V~~--~~~~ 373 (415)
-+.|+|+|+|+|+-+-.- ..+..+.+..+. -.+... ...+--..|.||++.+..+ .|+.
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~ 103 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEEST
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECC
Confidence 589999999999744321 113334443332 112111 1114556799999887655 5554
No 80
>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=36.90 E-value=71 Score=24.56 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=27.6
Q ss_pred eeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEEEEEe
Q 014987 357 VHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSLHIG 398 (415)
Q Consensus 357 v~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~~vg 398 (415)
-.|.||++..|+|.+.. +.+ +.+..+.+++..| -++.+|
T Consensus 44 ~~l~~g~~~~v~i~f~~-~p~-~~e~~grf~lr~g-~tva~G 82 (87)
T cd03708 44 DVLRTGDRALVRFRFLY-HPE-YLREGQRLIFREG-RTKGVG 82 (87)
T ss_pred hhccCCCeEEEEEEECC-CCc-EEccCCeEEEECC-CcEEEE
Confidence 46899999999999543 455 3455567777777 566655
No 81
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=36.82 E-value=1.6e+02 Score=27.61 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=33.5
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccce-eeeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK-VHVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~k-v~l~pGes~~V~~~~~ 372 (415)
.+++.|+|+|+. .-.||..+........+...+.---= ..|+||+.++|+|.-.
T Consensus 36 ~~si~i~N~~~~--p~LvQsWv~~~~~~~~~~~pFivtPPl~rl~p~~~q~lRI~~~ 90 (226)
T PRK15295 36 ESSINVENKDSK--ANLVQSWLSVVDPQVTNKQAFIITPPLFRLDAGQKNSIRVIRS 90 (226)
T ss_pred eeEEEEEeCCCC--cEEEEEEEeCCCCCCCCCCCEEEcCCeEEECCCCceEEEEEEC
Confidence 578999999986 58899998754311101000111111 3589999999998654
No 82
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=36.19 E-value=31 Score=34.07 Aligned_cols=56 Identities=25% Similarity=0.355 Sum_probs=31.6
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||++.|... ..+.+|.. |=... +++++.+.+. +...+++ +..||.|+
T Consensus 63 y~~~~daDivvitaG~~~---k~g~tR~d--ll~~N~~i~~~i~~~i~~~-~p~a~vi-vvtNPvDv 122 (310)
T cd01337 63 KKALKGADVVVIPAGVPR---KPGMTRDD--LFNINAGIVRDLATAVAKA-CPKALIL-IISNPVNS 122 (310)
T ss_pred HHhcCCCCEEEEeCCCCC---CCCCCHHH--HHHHHHHHHHHHHHHHHHh-CCCeEEE-EccCchhh
Confidence 467899999999998654 22333322 11122 2344455543 3344444 45999976
No 83
>PRK13555 azoreductase; Provisional
Probab=35.76 E-value=90 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHH
Q 014987 115 GAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 161 (415)
Q Consensus 115 ~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la 161 (415)
...++.++.||.+|++.= --++.+|..=+..|+.+.
T Consensus 81 ~~~~~~~~~AD~lvi~~P-----------~~n~~~Pa~LK~~iD~v~ 116 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFP-----------LWNFTVPAPLITYISYLS 116 (208)
T ss_pred HHHHHHHHHcCEEEEEcC-----------cccccchHHHHHHHHHHh
Confidence 455678899999988751 124555665555665554
No 84
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=35.31 E-value=26 Score=34.38 Aligned_cols=55 Identities=27% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.+++||+||++.|... ..+.+|.++ -... +++++++.+. +...+++ +.+||.++
T Consensus 60 ~~~~daDivVitag~~r---k~g~~R~dl--l~~N~~i~~~~~~~i~~~-~p~~~vi-vvsNP~d~ 118 (299)
T TIGR01771 60 SDCKDADLVVITAGAPQ---KPGETRLEL--VGRNVRIMKSIVPEVVKS-GFDGIFL-VATNPVDI 118 (299)
T ss_pred HHHCCCCEEEECCCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHh-CCCeEEE-EeCCHHHH
Confidence 57889999999988654 224444321 1111 2344555543 3344444 45899875
No 85
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=35.19 E-value=1.4e+02 Score=31.27 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=36.7
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceec-ccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLI-GFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~-gF~kv~l~pGes~~V~~~~~~ 373 (415)
+-++++.|+|+|...-+.+.-.|.. |..-.-|..+.. -+..-.|.|||+..|+|.+..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~-~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~ 226 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLES-PTSYLGPIYSANDTPYIGALGPGESVNVTFSVYA 226 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeC-CcceeccccccccceeeeeeCCCceEEEEEEEEe
Confidence 4589999999999876666655543 111011111111 122336899999999999987
No 86
>PLN02602 lactate dehydrogenase
Probab=34.98 E-value=29 Score=34.92 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=31.1
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhH----HHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~----~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.+++||+||++.|... .++.+|.++ -.... ++++++.+.+ .+.++++. .||.++
T Consensus 101 ~~~~daDiVVitAG~~~---k~g~tR~dl--l~~N~~I~~~i~~~I~~~~-p~~ivivv-tNPvdv 159 (350)
T PLN02602 101 AVTAGSDLCIVTAGARQ---IPGESRLNL--LQRNVALFRKIIPELAKYS-PDTILLIV-SNPVDV 159 (350)
T ss_pred HHhCCCCEEEECCCCCC---CcCCCHHHH--HHHHHHHHHHHHHHHHHHC-CCeEEEEe-cCchHH
Confidence 45789999999988654 223444322 11122 3444555433 34555544 899876
No 87
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=34.11 E-value=1.8e+02 Score=27.34 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccce----eeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~k----v~l~pGes~~V~~~~~~ 373 (415)
.++++|+|.|+. ...||..+.+......|.+.=.-|-= ..|+||+.++++|....
T Consensus 35 ~~si~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~~ 93 (226)
T PRK15218 35 DITVQLMNDGKR--SSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRVAANSGQQLKIKKLA 93 (226)
T ss_pred EEEEEEEcCCCC--cEEEEEEEeCCCCCCCcccccCCEEECCCeEEECCCCceEEEEEECC
Confidence 588889999986 59999999865422111111012322 24899999999997643
No 88
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=33.45 E-value=2.2e+02 Score=26.72 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=33.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCC--Cccceecccce----eeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNW--SPNKQLIGFKK----VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~--~p~~~L~gF~k----v~l~pGes~~V~~~~~~ 373 (415)
.++++|+|+|+. .-.||..+....... .| |-= ..|+||++++|+|-...
T Consensus 39 ~~si~i~N~~~~--p~LvQswv~~~~~~~~~~p------FivtPPlfrl~p~~~q~lRI~~~~ 93 (229)
T PRK15211 39 NISFEVTNQADQ--TYGGQVWIDNTTQGSSTVY------MVPAPPFFKVRPKEKQIIRIMKTD 93 (229)
T ss_pred eEEEEEEeCCCC--cEEEEEEEecCCCCCccCC------EEEcCCeEEECCCCceEEEEEECC
Confidence 578899999986 599999987543211 11 211 35899999999986543
No 89
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=33.42 E-value=1.8e+02 Score=27.59 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=34.6
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccce----eeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKK----VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~k----v~l~pGes~~V~~~~~~ 373 (415)
.++++|+|+++.. ..||..+.+.... ..| |-= ..|+||+..+++|....
T Consensus 45 ~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~p------FivtPPlfRlep~~~~~lRI~~~~ 98 (237)
T PRK15224 45 GATLSVSNPQNYP--ILVQSSVKAADKSSPAP------FLVMPPLFRLEANQQSQLRIVRTG 98 (237)
T ss_pred EEEEEEEcCCCCc--EEEEEEEeCCCCCccCC------EEECCCeEEECCCCceEEEEEECC
Confidence 5788899999764 9999999865432 111 211 24899999999987653
No 90
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=33.37 E-value=1.1e+02 Score=26.16 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=36.5
Q ss_pred eEEEEEEEEeCCCCCc-ceEEEEeeeCCCCC------CCccceeccc--ceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAG-THTLLVFAKPPAGN------WSPNKQLIGF--KKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G-~evvQlY~~~~~~~------~~p~~~L~gF--~kv~l~pGes~~V~~~~~~ 373 (415)
.+.++.+|+|+++.+= -=.+++-+.+..+. -.|..-|..- .+..|+||++.++++.+..
T Consensus 69 ~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~ 136 (149)
T PF11906_consen 69 VLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLED 136 (149)
T ss_pred EEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeC
Confidence 5899999999998751 11233444444432 1342223322 1445999999999998874
No 91
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=32.91 E-value=44 Score=32.84 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCC-C-hhhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLL-P-GRQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l-~-~~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.++++|+||++.|.+. .++.+|.++-. . ..-.++++.+.+.+. .-++++. +||.++
T Consensus 68 ~~l~~aDiViitag~p~---~~~~~r~dl~~~n~~i~~~~~~~i~~~~~-~~~viv~-~npvd~ 126 (309)
T cd05294 68 SDVAGSDIVIITAGVPR---KEGMSRLDLAKKNAKIVKKYAKQIAEFAP-DTKILVV-TNPVDV 126 (309)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-CCchHH
Confidence 45889999999998654 23333322100 0 011233444544332 3344444 799875
No 92
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.83 E-value=1.6e+02 Score=26.14 Aligned_cols=47 Identities=23% Similarity=0.298 Sum_probs=29.6
Q ss_pred hHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 114 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 114 ~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
..+....++.+|.+|+++-... .+.....+.++.+.. .+.|+|+|++
T Consensus 84 ~~~~~~~~~~~D~ailvVda~~------------g~~~~~~~~l~~~~~-~~~p~ivvlN 130 (188)
T PF00009_consen 84 IKEMIRGLRQADIAILVVDAND------------GIQPQTEEHLKILRE-LGIPIIVVLN 130 (188)
T ss_dssp HHHHHHHHTTSSEEEEEEETTT------------BSTHHHHHHHHHHHH-TT-SEEEEEE
T ss_pred eecccceecccccceeeeeccc------------ccccccccccccccc-cccceEEeee
Confidence 4556677889999999984221 133344556666554 5789777776
No 93
>PF07233 DUF1425: Protein of unknown function (DUF1425); InterPro: IPR010824 This family consists of several hypothetical bacterial proteins of around 125 residues in length. Several members of this family are described as putative lipoproteins and are often known as YcfL. The function of this family is unknown.; PDB: 3O0L_A.
Probab=31.42 E-value=2.7e+02 Score=22.12 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=32.0
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
..++++.++|+.+.+-.=--.+|==+..+- ..|. .-.++++.|.++++.++...-+.
T Consensus 25 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~~~l~~~~~~~l~~~ap~ 82 (94)
T PF07233_consen 25 LLRAQATLSNKSSKPLTLQYRFYWYDKQGLEVDPE--QSPWQSLTLPGGQTVTLSAVAPN 82 (94)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEEEE-TTS-EE--T--T---EEEEE-TT-EEEEEEE-SS
T ss_pred eEEEEEEEEECCCCcEEEEEEEEEECCCCCCcCCC--CCCCEEEEEcCCCEEEEEEECCC
Confidence 589999999999877444444444444443 2222 25688899999999999887665
No 94
>TIGR02268 Myxococcus xanthus paralogous family TIGR02268. This family consists of at least 8 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=31.27 E-value=3.9e+02 Score=26.27 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=38.5
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
+-|.|.|.|.+.-..=..-|.=+.... +.+.+.|+-.+.=.|.||++..|-+....
T Consensus 211 ~~v~v~l~N~~g~~pW~~~~A~Lt~~~--G~~~~~l~~~~~~pl~Pg~~~~vvVe~e~ 266 (295)
T TIGR02268 211 VAVAVNLENPPGAAPWQAGGAALTGLD--GNELKELPVWQEGPLLPGGFSRVLVVAEP 266 (295)
T ss_pred EEEEEEEEcCCCCCCcccceEEEeCCC--CCcceEEEeccccccCCCCceeEEEEecC
Confidence 679999999854322222233334332 33578888888888999999999888766
No 95
>PF14079 DUF4260: Domain of unknown function (DUF4260)
Probab=31.10 E-value=23 Score=29.50 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=12.4
Q ss_pred cccCcCCCC-CCeeeccc
Q 014987 260 FPFGHGMSY-TTFAHTLS 276 (415)
Q Consensus 260 ypFG~GLSY-t~F~ys~~ 276 (415)
--|||||.| +.|.++-+
T Consensus 93 R~lGYGLKy~~gF~~THL 110 (113)
T PF14079_consen 93 RALGYGLKYPDGFKDTHL 110 (113)
T ss_pred HHcCcCCCCCCCcccccc
Confidence 358999999 46776643
No 96
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=30.64 E-value=2.6e+02 Score=25.13 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=7.8
Q ss_pred hcCCEEEEEcC
Q 014987 122 RQADATVLVMG 132 (415)
Q Consensus 122 ~~aD~vIv~~g 132 (415)
..+|+++|++|
T Consensus 99 s~~dil~VglG 109 (177)
T TIGR00696 99 SGAGIVFVGLG 109 (177)
T ss_pred cCCCEEEEEcC
Confidence 45687777776
No 97
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=30.62 E-value=1.7e+02 Score=27.55 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=34.7
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccce----eeeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----VHVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~k----v~l~pGes~~V~~~~~ 372 (415)
.++++|+|+++. .-.||..+........|.+.-.-|-= ..|+||+.++++|...
T Consensus 27 ~~sv~l~N~~~~--p~LvQsWvd~~~~~~~p~~~~~pFivtPPlfrl~~~~~~~lRI~~~ 84 (233)
T PRK15246 27 AQSLTLSNDNTT--PMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLLS 84 (233)
T ss_pred eEEEEEEeCCCC--cEEEEEEEeCCCCccCcccccCcEEECCcceEECCCCceEEEEEEC
Confidence 588899999975 68999999753321222111012222 2489999999998754
No 98
>cd09030 DUF1425 Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.
Probab=30.29 E-value=2.8e+02 Score=22.11 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=38.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
..++++.|+|+.+.+-.=--.+|==+..+- ..|. .-.++.+.|.++++.+|...-+.
T Consensus 33 ~~~~~~~l~N~~~~~~~l~Yrf~WyD~~G~~v~~~--~~~w~~l~l~~~~~~~l~~~ap~ 90 (101)
T cd09030 33 LLEAQATLSNTSSKPLTLQYRFYWYDAQGLEVEPE--QEPWQSLTLPGGQTVTLQAVAPN 90 (101)
T ss_pred eEEEEEEEEeCCCCCEEEEEEEEEECCCCCCcCCC--CCCCEEEEECCCCeEEEEEEcCC
Confidence 589999999998765333333343344443 2222 57889999999999999877665
No 99
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=30.14 E-value=71 Score=22.56 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=18.8
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPA 342 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~ 342 (415)
.++.+++|+|+|..... -|++--..|.
T Consensus 13 ~v~Yti~v~N~g~~~a~-~v~v~D~lP~ 39 (53)
T TIGR01451 13 TITYTITVTNNGNVPAT-NVVVTDILPS 39 (53)
T ss_pred EEEEEEEEEECCCCceE-eEEEEEcCCC
Confidence 69999999999986643 3444444443
No 100
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=30.14 E-value=1.5e+02 Score=30.80 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=36.4
Q ss_pred HHhh-cCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceee
Q 014987 119 VAAR-QADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 179 (415)
Q Consensus 119 ~~a~-~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~ 179 (415)
+.+. .+|..||++...+ +. .-.|.+ .-..+.++++++.+ .++|.|+|+++..|+.
T Consensus 139 kVI~dhstIgivVtTDgs-i~--dI~Re~--y~~aEe~~i~eLk~-~~kPfiivlN~~dp~~ 194 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGT-IT--DIPRED--YVEAEERVIEELKE-LNKPFIILLNSTHPYH 194 (492)
T ss_pred HHHHhcCcEEEEEEcCCC-cc--cccccc--chHHHHHHHHHHHh-cCCCEEEEEECcCCCC
Confidence 4455 8899998873211 00 112222 34567789999875 6799999999999884
No 101
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=29.91 E-value=2.4e+02 Score=23.09 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=28.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCcccee-cccceeeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQL-IGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L-~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.-++.|.|...-+ ..+++=+..+ |.-+| .+...+.|+|||++++.|.|..
T Consensus 34 ~Y~lkl~Nkt~~~--~~~~i~~~g~-----~~~~l~~~~~~i~v~~g~~~~~~v~v~~ 84 (118)
T PF11614_consen 34 QYTLKLTNKTNQP--RTYTISVEGL-----PGAELQGPENTITVPPGETREVPVFVTA 84 (118)
T ss_dssp EEEEEEEE-SSS---EEEEEEEES------SS-EE-ES--EEEE-TT-EEEEEEEEEE
T ss_pred EEEEEEEECCCCC--EEEEEEEecC-----CCeEEECCCcceEECCCCEEEEEEEEEE
Confidence 3567788977644 3344444432 23355 5778889999999999997765
No 102
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=29.76 E-value=2.2e+02 Score=27.11 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=34.3
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccce----eeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKK----VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~k----v~l~pGes~~V~~~~~~ 373 (415)
.++++|+|+++.. -.||..+.+.... ..| |-= ..|+||+..+++|....
T Consensus 57 ~~sl~i~N~~~~p--~LvQsWvd~~~~~~~~p------FiVtPPLfRLep~~~~~lRIi~~~ 110 (246)
T PRK15233 57 STSFWIMNEKEYP--ILVQTQVYNDDKSSKAP------FIVTPPILKVESNARTRLKVIPTS 110 (246)
T ss_pred EEEEEEEcCCCCc--EEEEEEEecCCCCccCC------EEECCCeEEECCCCceEEEEEECC
Confidence 5788899998664 8999999864422 111 211 35899999999997754
No 103
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=29.66 E-value=39 Score=33.08 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhH----HHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQ----ELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~----~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.++++|+||++.|... .++.+|.++ -.... ++.+++.+.+ ...+++ +.+||.++
T Consensus 64 ~~l~~aDIVIitag~~~---~~g~~R~dl--l~~N~~i~~~~~~~i~~~~-~~~~vi-vvsNP~d~ 122 (306)
T cd05291 64 SDCKDADIVVITAGAPQ---KPGETRLDL--LEKNAKIMKSIVPKIKASG-FDGIFL-VASNPVDV 122 (306)
T ss_pred HHhCCCCEEEEccCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEE-EecChHHH
Confidence 34689999999998654 234444321 11122 3334444433 344444 44899876
No 104
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=29.57 E-value=37 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=15.3
Q ss_pred ccccCcCCCCCCeeecccc
Q 014987 259 VFPFGHGMSYTTFAHTLSK 277 (415)
Q Consensus 259 lypFG~GLSYt~F~ys~~~ 277 (415)
.|-.-||+.||.|....-.
T Consensus 31 ~y~~~~g~g~~~f~~~~~g 49 (110)
T PF06165_consen 31 EYEVRHGFGYTRFEREDGG 49 (110)
T ss_dssp EEEEEEESSEEEEEEEETT
T ss_pred cEEEEECCCeEEEEEEeCC
Confidence 5788899999999976533
No 105
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.25 E-value=65 Score=24.18 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=15.3
Q ss_pred eEEEEEEEEeCCCCCcce
Q 014987 315 SLGLHVDIKNTGDMAGTH 332 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~e 332 (415)
.++.+++|+|+|+.....
T Consensus 42 ~v~ytitvtN~G~~~a~n 59 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATN 59 (76)
T ss_pred EEEEEEEEEECCCCeeEe
Confidence 699999999999887444
No 106
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=28.40 E-value=44 Score=32.97 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=30.3
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChhh----HHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQ----QELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q----~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.+++||+||++.|... .++.+|.++ -... +++++++.+.+ ...+++ +.+||.++
T Consensus 69 ~~~~~adivIitag~~~---k~g~~R~dl--l~~N~~i~~~i~~~i~~~~-~~~~vi-vvsNP~d~ 127 (315)
T PRK00066 69 SDCKDADLVVITAGAPQ---KPGETRLDL--VEKNLKIFKSIVGEVMASG-FDGIFL-VASNPVDI 127 (315)
T ss_pred HHhCCCCEEEEecCCCC---CCCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCeEEE-EccCcHHH
Confidence 56789999999988653 223344321 1112 23344555433 234444 44899875
No 107
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=28.25 E-value=2e+02 Score=27.10 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=40.0
Q ss_pred hcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCCh
Q 014987 122 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQ 200 (415)
Q Consensus 122 ~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~ 200 (415)
+.+|++||.++- ..|. .....+.|+++.+++.. .|.-+| +...|-.+..++ ..+.-+.+|..|.
T Consensus 182 ~~~D~vIv~~Hw----G~e~----~~~p~~~q~~~a~~lid-aGaDiI---iG~HpHv~q~~E---~y~~~~I~YSLGN 245 (250)
T PF09587_consen 182 KKADVVIVSLHW----GIEY----ENYPTPEQRELARALID-AGADII---IGHHPHVIQPVE---IYKGKPIFYSLGN 245 (250)
T ss_pred cCCCEEEEEecc----CCCC----CCCCCHHHHHHHHHHHH-cCCCEE---EeCCCCcccceE---EECCEEEEEeCcc
Confidence 469999999852 1221 22336789999999886 465432 347888887663 3344455666554
No 108
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=28.19 E-value=1.4e+02 Score=26.32 Aligned_cols=53 Identities=21% Similarity=0.043 Sum_probs=32.0
Q ss_pred cchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHH--hhCCCCEEEEEECC
Q 014987 112 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA--KASRGPVVLVLMCG 175 (415)
Q Consensus 112 ~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la--~~~~~pvVvVl~~g 175 (415)
....+..+.+.+||.+|++.= . -+..+|+.=+.+++.+. .-.+||++++..+|
T Consensus 57 ~~~~~~~~~i~~AD~iIi~tP--~---------Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g 111 (174)
T TIGR03566 57 PDAERILQAIESADLLVVGSP--V---------YRGSYTGLFKHLFDLVDPNALIGKPVLLAATGG 111 (174)
T ss_pred HHHHHHHHHHHHCCEEEEECC--c---------CcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecC
Confidence 345667788999999998851 1 13445555556666542 12367776665433
No 109
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=27.87 E-value=2.6e+02 Score=26.59 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=35.3
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccce----eeeCCCCEEEEEEEeC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKK----VHVTAGALQSVRLDIH 372 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~k----v~l~pGes~~V~~~~~ 372 (415)
.++++|+|+++. ...||..+.+......|.+.-.-|-= ..|+||+..+++|.-.
T Consensus 50 ~~sv~i~N~~~~--pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl~p~~~~~lRI~~~ 107 (242)
T PRK15253 50 EVVVQLVNQGEQ--ASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKM 107 (242)
T ss_pred eEEEEEEcCCCC--cEEEEEEEECCCCCCCcccccCCEEECCCeEEECCCCceEEEEEEC
Confidence 578889999986 59999999864422112111012322 2479999999999643
No 110
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=27.86 E-value=85 Score=27.73 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=14.0
Q ss_pred eeeCCCCEEEEEEEeCC
Q 014987 357 VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 357 v~l~pGes~~V~~~~~~ 373 (415)
+.|+||+|.+..+..+.
T Consensus 116 v~L~PG~s~elvv~ft~ 132 (158)
T COG4454 116 VTLAPGKSGELVVVFTG 132 (158)
T ss_pred eEeCCCCcEEEEEEecC
Confidence 57999999988877763
No 111
>PRK00170 azoreductase; Reviewed
Probab=27.76 E-value=1.2e+02 Score=27.19 Aligned_cols=38 Identities=16% Similarity=0.141 Sum_probs=25.2
Q ss_pred chHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHH
Q 014987 113 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA 161 (415)
Q Consensus 113 ~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la 161 (415)
+..+..+.+..||.+|++.= --++.+|..-+.+|+.+.
T Consensus 76 ~~~~l~~~i~~AD~iV~~sP-----------~y~~~~pa~LK~~iDrv~ 113 (201)
T PRK00170 76 LSDELLEEFLAADKIVIAAP-----------MYNFSIPTQLKAYIDLIA 113 (201)
T ss_pred HHHHHHHHHHHCCEEEEeec-----------ccccCCcHHHHHHHHhhe
Confidence 34566788899999998751 124556666666776653
No 112
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=27.66 E-value=1.1e+02 Score=29.81 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=31.2
Q ss_pred chHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec--cCc
Q 014987 113 LIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV--SFA 183 (415)
Q Consensus 113 ~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l--~~~ 183 (415)
..+++.+.++++|++||+-|..+ .+-.+|. +++...++|+..| .++=+| .|+
T Consensus 199 RQ~a~~~La~~vD~miVVGg~~S---------------sNT~rL~-eia~~~~~~t~~I---e~~~el~~~~~ 252 (281)
T PRK12360 199 RQESAKELSKEVDVMIVIGGKHS---------------SNTQKLV-KICEKNCPNTFHI---ETADELDLEML 252 (281)
T ss_pred HHHHHHHHHHhCCEEEEecCCCC---------------ccHHHHH-HHHHHHCCCEEEE---CChHHCCHHHh
Confidence 34556778889999998876443 2334565 4554445666554 444444 455
No 113
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=27.48 E-value=1.4e+02 Score=24.59 Aligned_cols=65 Identities=14% Similarity=0.275 Sum_probs=37.7
Q ss_pred EEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeee-CCCCEEEEEE-EeCCCCC--ee-EEeCCCCEEec
Q 014987 320 VDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHV-TAGALQSVRL-DIHVCKH--LS-VVDKFGIRRIP 389 (415)
Q Consensus 320 v~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l-~pGes~~V~~-~~~~~~~--ls-~~d~~~~~~~~ 389 (415)
|+|+|.=+..|.-.|+||-....- .+.-..+.+..+ ..+.+.+++| .|++ -. ++ +.|++++..+.
T Consensus 1 V~V~gi~~~~G~v~v~ly~~~~~f----~~~~~~~~~~~~~~~~~~~~~~f~~lp~-G~YAi~v~hD~N~NgklD 70 (112)
T PF09912_consen 1 VTVEGIRNDKGQVRVALYNSAEGF----ENKKKALKRVKVPAKGGTVTITFEDLPP-GTYAIAVFHDENGNGKLD 70 (112)
T ss_pred CEecccCCCCcEEEEEEEcChhch----hhcccceeEEEEEcCCCcEEEEECCCCC-ccEEEEEEEeCCCCCcCC
Confidence 467787788899999999662211 223334444443 4446667777 4554 33 33 34777654444
No 114
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=27.46 E-value=61 Score=31.80 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=29.4
Q ss_pred HhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHH----HHHHHHhhCCCCEEEEEECCceeec
Q 014987 120 AARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQE----LVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 120 ~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~----li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++|+||+++|.+.. ++.+|.+ +-....+ .++++.+.. ...++++ ..||.++
T Consensus 66 ~~~~aDiVIitag~p~~---~~~sR~~--l~~~N~~iv~~i~~~I~~~~-p~~~iIv-~tNP~di 123 (305)
T TIGR01763 66 DTANSDIVVITAGLPRK---PGMSRED--LLSMNAGIVREVTGRIMEHS-PNPIIVV-VSNPLDA 123 (305)
T ss_pred HhCCCCEEEEcCCCCCC---cCCCHHH--HHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecCcHHH
Confidence 36899999999986542 1222311 1122233 344555433 3344444 4999886
No 115
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=26.72 E-value=1.1e+02 Score=24.47 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=28.9
Q ss_pred HHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 116 AAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 116 ~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
...+.+..+|++|+++-... .+.....++++.+. .++|+++|++
T Consensus 72 ~~~~~~~~~d~ii~vv~~~~------------~~~~~~~~~~~~l~--~~~~~i~v~N 115 (116)
T PF01926_consen 72 KFLEQISKSDLIIYVVDASN------------PITEDDKNILRELK--NKKPIILVLN 115 (116)
T ss_dssp HHHHHHCTESEEEEEEETTS------------HSHHHHHHHHHHHH--TTSEEEEEEE
T ss_pred HHHHHHHHCCEEEEEEECCC------------CCCHHHHHHHHHHh--cCCCEEEEEc
Confidence 45666788999999884111 12234567778884 5678888764
No 116
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=26.46 E-value=1.3e+02 Score=25.81 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=11.4
Q ss_pred HHHhhcCCEEEEEc
Q 014987 118 EVAARQADATVLVM 131 (415)
Q Consensus 118 ~~~a~~aD~vIv~~ 131 (415)
.+.++++|++|+++
T Consensus 3 ~~~l~~aD~il~Vv 16 (157)
T cd01858 3 YKVIDSSDVVIQVL 16 (157)
T ss_pred hHhhhhCCEEEEEE
Confidence 45678999999887
No 117
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=26.11 E-value=1.3e+02 Score=25.89 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=13.9
Q ss_pred HHHhhcCCEEEEEcCCC
Q 014987 118 EVAARQADATVLVMGLD 134 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~ 134 (415)
...+++||+|||-.|+.
T Consensus 67 ~~li~~aDvVVvrFGek 83 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEK 83 (141)
T ss_pred HHHHhhCCEEEEEechH
Confidence 45678999999999854
No 118
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=25.24 E-value=2.3e+02 Score=28.79 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=25.2
Q ss_pred EEEEEEeCCCCCcceEEEEeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 318 LHVDIKNTGDMAGTHTLLVFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 318 vsv~V~NtG~~~G~evvQlY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
+.+.|+|.|....+ ..+| ... ++-=+|=.|.||.|.++++++.+
T Consensus 53 ~~f~V~N~~~~~~E--fe~~--~~~--------~vv~e~EnIaPG~s~~l~~~L~p 96 (375)
T PRK10378 53 TQFIIQNHSQKALE--WEIL--KGV--------MVVEERENIAPGFSQKMTANLQP 96 (375)
T ss_pred EEEEEEeCCCCcce--EEee--ccc--------cccccccccCCCCceEEEEecCC
Confidence 67788999987743 2222 110 11001225889999887666643
No 119
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=24.83 E-value=1e+02 Score=29.47 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=35.8
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCC-----CCCCChhhHHHHHHHHhhCCCCEEEEEECCceee
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRA-----GLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVD 179 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~-----~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~ 179 (415)
.+..++-|++|++-+-++ .||..|. |..+-..|...+++.++ .+.+|+|| |||-.
T Consensus 75 ~~afkdv~~ailvGa~PR---~eGMERkDll~~NvkIfk~Qg~AL~k~A~-~~~KVlVV---gNPaN 134 (332)
T KOG1496|consen 75 VEAFKDVDVAILVGAMPR---REGMERKDLLSANVKIFKSQGAALEKYAK-PNVKVLVV---GNPAN 134 (332)
T ss_pred hhhhccCcEEEEeccccC---cccchhhhHHhhcceeehhhhHHHHHhcC-CCceEEEe---cCccc
Confidence 456788899998866554 4565554 45666788888888775 33445444 66643
No 120
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=24.53 E-value=1.5e+02 Score=29.11 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=42.6
Q ss_pred cchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeec--cCcCCCCCc
Q 014987 112 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDV--SFAKNDPRI 189 (415)
Q Consensus 112 ~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l--~~~~~~~~v 189 (415)
...+++.+.+++.|++||+-|..+ .+-.+|. ++++..++|+..| .++=+| .|+. ..
T Consensus 199 ~RQ~a~~~La~~vD~miVVGg~~S---------------sNT~kL~-~i~~~~~~~t~~I---e~~~el~~~~l~---~~ 256 (298)
T PRK01045 199 NRQEAVKELAPQADLVIVVGSKNS---------------SNSNRLR-EVAEEAGAPAYLI---DDASEIDPEWFK---GV 256 (298)
T ss_pred HHHHHHHHHHhhCCEEEEECCCCC---------------ccHHHHH-HHHHHHCCCEEEE---CChHHCcHHHhc---CC
Confidence 334567788899999998876443 2334555 4554455676654 444444 4553 33
Q ss_pred cEE-EeccCCChh-HHHHHHHHhhcC
Q 014987 190 GAI-LWVGYPGQA-GGAAIADVLFGR 213 (415)
Q Consensus 190 ~Ai-l~a~~~g~~-~g~AladvL~G~ 213 (415)
+.| |.|.-+.+. .-+-+.+.|.+-
T Consensus 257 ~~VGitaGASTP~~li~eV~~~l~~~ 282 (298)
T PRK01045 257 KTVGVTAGASAPEWLVQEVIARLKEL 282 (298)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 333 223333332 224555555543
No 121
>PF04314 DUF461: Protein of unknown function (DUF461); InterPro: IPR007410 This entry represents a domain found in of proteins of unknown function, including DR1885 from Deinococcus radiodurans and CC3502 from Caulobacter crescentus (Caulobacter vibrioides), which share a potential metal binding motif H(M)X10MX21HXM. DR1885 was found to bind copper(I) through a histidine and three Mets in a cupredoxin-like fold []. The surface location of the copper-binding site as well as the type of coordination are well poised for metal transfer chemistry, suggesting that DR1885 might transfer copper, taking the role of Cox17 in bacteria (Cox17 being an accessory protein required for correct assembly of eukaryotic cyochrome c oxidase). ; PDB: 2K6W_A 2K6Z_A 2K6Y_A 2K70_A 1X9L_A 2JQA_A.
Probab=24.37 E-value=3.9e+02 Score=21.73 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=15.4
Q ss_pred EEEEEEEEeCCCCCcceEEEEeeeCCCC
Q 014987 316 LGLHVDIKNTGDMAGTHTLLVFAKPPAG 343 (415)
Q Consensus 316 ~~vsv~V~NtG~~~G~evvQlY~~~~~~ 343 (415)
-.+.++|+|+|+ +.+.-+.++.+..
T Consensus 16 ~a~y~ti~N~g~---~~~~L~~v~s~~a 40 (110)
T PF04314_consen 16 TAAYFTITNNGD---QDDRLVGVSSPAA 40 (110)
T ss_dssp EEEEEEEE-CSS---SEEEEEEEE-TTC
T ss_pred EEEEEEEEeCCC---CCeEEEEEEcCCC
Confidence 567799999997 4455556665543
No 122
>COG1159 Era GTPase [General function prediction only]
Probab=24.30 E-value=1.9e+02 Score=28.37 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=29.9
Q ss_pred hHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 114 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 114 ~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
...+...++++|++++++-.+. .+......+++.+.+ .+.|+|++++
T Consensus 76 ~~~a~~sl~dvDlilfvvd~~~------------~~~~~d~~il~~lk~-~~~pvil~iN 122 (298)
T COG1159 76 NKAARSALKDVDLILFVVDADE------------GWGPGDEFILEQLKK-TKTPVILVVN 122 (298)
T ss_pred HHHHHHHhccCcEEEEEEeccc------------cCCccHHHHHHHHhh-cCCCeEEEEE
Confidence 3567788999999999984322 112233445566654 4568888876
No 123
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=23.84 E-value=3.7e+02 Score=25.26 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=33.3
Q ss_pred EEEEEEEeCCCCCcceEEEEeeeCCCCCC-Cccceecccce-eeeCCCCEEEEEEEeCC
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAKPPAGNW-SPNKQLIGFKK-VHVTAGALQSVRLDIHV 373 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~~~~~~~-~p~~~L~gF~k-v~l~pGes~~V~~~~~~ 373 (415)
.++++|+|+++- ....||..+....... .|. .-.-= ..|+||+.++++|-...
T Consensus 44 ~~sv~i~N~~~~-~p~LvQsWv~~~~~~~~~pF---ivtPPlfrl~~~~~~~lRI~~~~ 98 (228)
T PRK15188 44 QTSLPIINSSAS-NVFLIQSWVANADGSRSTDF---IITPPLFVIQPKKENILRIMYVG 98 (228)
T ss_pred eEEEEEEeCCCC-ccEEEEEEEecCCCCccCCE---EEcCCeEEECCCCceEEEEEECC
Confidence 688999999852 2467999997543321 110 00001 35899999999986553
No 124
>PRK05086 malate dehydrogenase; Provisional
Probab=23.48 E-value=73 Score=31.41 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=31.2
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCCh---hhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~---~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.+.++++|+||++.|... ..+.+|.++ +.. .-.++++++.+. +..-++ ++..||.|+
T Consensus 64 ~~~l~~~DiVIitaG~~~---~~~~~R~dl-l~~N~~i~~~ii~~i~~~-~~~~iv-ivvsNP~D~ 123 (312)
T PRK05086 64 TPALEGADVVLISAGVAR---KPGMDRSDL-FNVNAGIVKNLVEKVAKT-CPKACI-GIITNPVNT 123 (312)
T ss_pred HHHcCCCCEEEEcCCCCC---CCCCCHHHH-HHHHHHHHHHHHHHHHHh-CCCeEE-EEccCchHH
Confidence 456688999999998654 122223221 111 223456666654 333344 445999963
No 125
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.22 E-value=5.1e+02 Score=22.66 Aligned_cols=14 Identities=36% Similarity=0.332 Sum_probs=12.1
Q ss_pred eEEEEEEEEeCCCC
Q 014987 315 SLGLHVDIKNTGDM 328 (415)
Q Consensus 315 ~~~vsv~V~NtG~~ 328 (415)
..+..+-|||||+.
T Consensus 69 ~~t~t~yiKNtG~~ 82 (154)
T COG3354 69 PYTYTFYIKNTGSD 82 (154)
T ss_pred ceEEEEEEecCCCc
Confidence 57899999999974
No 126
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=23.20 E-value=1.3e+02 Score=26.61 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.9
Q ss_pred hcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 122 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 122 ~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
.+.|++|+++-.. + ......|..++.+ .++|+|+|++
T Consensus 77 ~~~D~ii~VvDa~-----------~---l~r~l~l~~ql~e-~g~P~vvvlN 113 (156)
T PF02421_consen 77 EKPDLIIVVVDAT-----------N---LERNLYLTLQLLE-LGIPVVVVLN 113 (156)
T ss_dssp TSSSEEEEEEEGG-----------G---HHHHHHHHHHHHH-TTSSEEEEEE
T ss_pred cCCCEEEEECCCC-----------C---HHHHHHHHHHHHH-cCCCEEEEEe
Confidence 5789999998321 1 1234567788876 6899999887
No 127
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=23.00 E-value=1.6e+02 Score=25.38 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=14.0
Q ss_pred HHHhhcCCEEEEEcCCC
Q 014987 118 EVAARQADATVLVMGLD 134 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~ 134 (415)
...+++||+|||-.|+.
T Consensus 70 ~~li~~aDvvVvrFGek 86 (144)
T TIGR03646 70 RKLIEKADVVIALFGEK 86 (144)
T ss_pred HHHHhhCCEEEEEechH
Confidence 45688999999999854
No 128
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=22.81 E-value=3.4e+02 Score=25.68 Aligned_cols=53 Identities=19% Similarity=0.150 Sum_probs=32.9
Q ss_pred EEEEEEEeCCCCCcceEEEEeee---CCCCC-C-------Cccceeccc-ceeeeCCCCEEEEEEEe
Q 014987 317 GLHVDIKNTGDMAGTHTLLVFAK---PPAGN-W-------SPNKQLIGF-KKVHVTAGALQSVRLDI 371 (415)
Q Consensus 317 ~vsv~V~NtG~~~G~evvQlY~~---~~~~~-~-------~p~~~L~gF-~kv~l~pGes~~V~~~~ 371 (415)
...+.|.|.|+.. .-+|+.+. .|... + .|..+|... .|+.|.||+++.|+|--
T Consensus 34 ~~~v~V~N~g~~~--~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~pg~~q~IRli~ 98 (234)
T PRK15308 34 ATSLFVYSKSDHT--QYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPAGTTRTVRVIS 98 (234)
T ss_pred eEEEEEEeCCCCc--EEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECCCCeEEEEEEE
Confidence 4678999999865 44444433 22111 1 233345444 56679999999999754
No 129
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=22.49 E-value=1.8e+02 Score=30.27 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=30.7
Q ss_pred hHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEE
Q 014987 114 IGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLM 173 (415)
Q Consensus 114 ~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~ 173 (415)
++.+.+.+++||.|++++-... .++....++++.+ . .++|+++|++
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~------------~~~~~d~~~~~~~-~-~~~~~i~v~N 332 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQ------------PLDKEDLALIELL-P-KKKPIIVVLN 332 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCC------------CCchhhHHHHHhc-c-cCCCEEEEEe
Confidence 4667889999999999983221 1344555666622 2 4678888876
No 130
>PTZ00325 malate dehydrogenase; Provisional
Probab=22.15 E-value=75 Score=31.52 Aligned_cols=57 Identities=25% Similarity=0.357 Sum_probs=31.9
Q ss_pred HHHhhcCCEEEEEcCCCcccccccCCCCCCCCCh---hhHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 118 EVAARQADATVLVMGLDQSIEAEFIDRAGLLLPG---RQQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~---~q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
.++++++|+||++.|.... .+.+|..+ +.. .-.++++++.+. +..-+++ .+.+|.+.
T Consensus 71 ~~~l~gaDvVVitaG~~~~---~~~tR~dl-l~~N~~i~~~i~~~i~~~-~~~~ivi-v~SNPvdv 130 (321)
T PTZ00325 71 EKALRGADLVLICAGVPRK---PGMTRDDL-FNTNAPIVRDLVAAVASS-APKAIVG-IVSNPVNS 130 (321)
T ss_pred HHHhCCCCEEEECCCCCCC---CCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEE-EecCcHHH
Confidence 4678899999999986431 12223221 111 223455666653 3333444 34899876
No 131
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=21.90 E-value=3.1e+02 Score=25.47 Aligned_cols=64 Identities=17% Similarity=0.177 Sum_probs=37.7
Q ss_pred hcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHhhCCCCEEEEEECCceeeccCcCCCCCccEEEeccCCCh
Q 014987 122 RQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAKASRGPVVLVLMCGGPVDVSFAKNDPRIGAILWVGYPGQ 200 (415)
Q Consensus 122 ~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~~~~~pvVvVl~~g~P~~l~~~~~~~~v~Ail~a~~~g~ 200 (415)
+++|+|||..+... |. + ..-.+.|+++.+++.. .+.-+| +.+.|-.+..++ ..+.-+.+|.-|.
T Consensus 171 ~~~D~vIv~~H~G~----e~-~---~~p~~~~~~~A~~l~~-~G~DvI---iG~H~H~~~~~e---~~~~~~I~YslGN 234 (239)
T smart00854 171 KKADVVIVSLHWGV----EY-Q---YEPTDEQRELAHALID-AGADVV---IGHHPHVLQPIE---IYKGKLIAYSLGN 234 (239)
T ss_pred ccCCEEEEEecCcc----cc-C---CCCCHHHHHHHHHHHH-cCCCEE---EcCCCCcCCceE---EECCEEEEEcccc
Confidence 46899999985322 11 1 1234678888888875 454432 358888776553 2334455676654
No 132
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.86 E-value=58 Score=32.12 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=30.5
Q ss_pred HHhhcCCEEEEEcCCCcccccccCCCCCCCCChh----hHHHHHHHHhhCCCCEEEEEECCceeec
Q 014987 119 VAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR----QQELVSRVAKASRGPVVLVLMCGGPVDV 180 (415)
Q Consensus 119 ~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~----q~~li~~la~~~~~pvVvVl~~g~P~~l 180 (415)
+.++++|+||++.|.... .+.+|.++ =.. -+++++.+.+.+ .+.++++ .+||.++
T Consensus 67 ~~~~~adivvitaG~~~k---~g~~R~dl--l~~N~~i~~~~~~~i~~~~-p~~~viv-vsNP~d~ 125 (312)
T cd05293 67 SVTANSKVVIVTAGARQN---EGESRLDL--VQRNVDIFKGIIPKLVKYS-PNAILLV-VSNPVDI 125 (312)
T ss_pred HHhCCCCEEEECCCCCCC---CCCCHHHH--HHHHHHHHHHHHHHHHHhC-CCcEEEE-ccChHHH
Confidence 357899999999886542 23344221 111 233445555533 3344444 4899876
No 133
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=21.63 E-value=97 Score=31.52 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=40.4
Q ss_pred HHHHHHHHhhCCCCEEEEEEC-CceeeccCcCC-------CCCccEEEeccCCChhHHHHHHHHhhcC
Q 014987 154 QELVSRVAKASRGPVVLVLMC-GGPVDVSFAKN-------DPRIGAILWVGYPGQAGGAAIADVLFGR 213 (415)
Q Consensus 154 ~~li~~la~~~~~pvVvVl~~-g~P~~l~~~~~-------~~~v~Ail~a~~~g~~~g~AladvL~G~ 213 (415)
+++|+++.+.+++||++|.++ |+++....+.. ...|+++|..--|-.-+..|+..+++|.
T Consensus 107 k~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~Gs~~a~~~~~sG~ 174 (389)
T PF02450_consen 107 KQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFGGSPKALRALLSGD 174 (389)
T ss_pred HHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCCCChHHHHHHhhhh
Confidence 356666655567899988775 77766432221 2358888887766555668888888898
No 134
>TIGR03352 VI_chp_3 type VI secretion lipoprotein, VC_A0113 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=21.30 E-value=2.5e+02 Score=24.40 Aligned_cols=24 Identities=13% Similarity=0.309 Sum_probs=21.7
Q ss_pred eecccceeeeCCCCEEEEEEEeCC
Q 014987 350 QLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 350 ~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.|.+-+++.|.|||+.++++++..
T Consensus 81 ~ll~~~e~~l~PG~~~~~~~~~~~ 104 (146)
T TIGR03352 81 DLIEQDEIILLPGEKRKITITLDP 104 (146)
T ss_pred HHhhcceEEECCCCeeEeeeecCC
Confidence 588888999999999999999986
No 135
>PLN00106 malate dehydrogenase
Probab=21.13 E-value=89 Score=31.04 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=31.6
Q ss_pred HHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChh---hHHHHHHHHhhCCCCEEEEEECCceee
Q 014987 117 AEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGR---QQELVSRVAKASRGPVVLVLMCGGPVD 179 (415)
Q Consensus 117 a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~---q~~li~~la~~~~~pvVvVl~~g~P~~ 179 (415)
..++++++|+||+..|.... .+.+|..+ ++.+ -.++++++.+. +...|++ +..||.+
T Consensus 80 ~~~~l~~aDiVVitAG~~~~---~g~~R~dl-l~~N~~i~~~i~~~i~~~-~p~aivi-vvSNPvD 139 (323)
T PLN00106 80 LGDALKGADLVIIPAGVPRK---PGMTRDDL-FNINAGIVKTLCEAVAKH-CPNALVN-IISNPVN 139 (323)
T ss_pred HHHHcCCCCEEEEeCCCCCC---CCCCHHHH-HHHHHHHHHHHHHHHHHH-CCCeEEE-EeCCCcc
Confidence 35678999999999886541 23333221 1111 13445556553 3344444 4599997
No 136
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.10 E-value=69 Score=33.39 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHhhcCCEEEEEcCCCc
Q 014987 118 EVAARQADATVLVMGLDQ 135 (415)
Q Consensus 118 ~~~a~~aD~vIv~~g~~~ 135 (415)
.++.+++|+||++.|...
T Consensus 194 ~ea~~daDvvIitag~pr 211 (452)
T cd05295 194 DVAFKDAHVIVLLDDFLI 211 (452)
T ss_pred HHHhCCCCEEEECCCCCC
Confidence 467889999999987654
No 137
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=20.87 E-value=3.3e+02 Score=21.50 Aligned_cols=50 Identities=10% Similarity=0.164 Sum_probs=28.1
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCCC-CCccceecccceeeeCCCCEEEEEEEeCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAGN-WSPNKQLIGFKKVHVTAGALQSVRLDIHV 373 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~~-~~p~~~L~gF~kv~l~pGes~~V~~~~~~ 373 (415)
.....++|+|.++.. -+-.+-.+.+..= .+|.. =.|+||++.+|.+++..
T Consensus 19 ~~~~~l~l~N~s~~~--i~fKiktt~~~~y~v~P~~-------G~i~p~~~~~i~I~~~~ 69 (109)
T PF00635_consen 19 QQSCELTLTNPSDKP--IAFKIKTTNPNRYRVKPSY-------GIIEPGESVEITITFQP 69 (109)
T ss_dssp -EEEEEEEEE-SSSE--EEEEEEES-TTTEEEESSE-------EEE-TTEEEEEEEEE-S
T ss_pred eEEEEEEEECCCCCc--EEEEEEcCCCceEEecCCC-------EEECCCCEEEEEEEEEe
Confidence 367889999999763 2223322222211 23431 24799999999999886
No 138
>PRK15231 fimbrial adhesin protein SefD; Provisional
Probab=20.73 E-value=3.6e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=39.7
Q ss_pred eCCCCCcceEEE--------EeeeCCCCCCCccceecccceeeeCCCCEEEEEEEeCCCCCeeEEeCCCCEEecCeEEEE
Q 014987 324 NTGDMAGTHTLL--------VFAKPPAGNWSPNKQLIGFKKVHVTAGALQSVRLDIHVCKHLSVVDKFGIRRIPMGEHSL 395 (415)
Q Consensus 324 NtG~~~G~evvQ--------lY~~~~~~~~~p~~~L~gF~kv~l~pGes~~V~~~~~~~~~ls~~d~~~~~~~~~G~~~~ 395 (415)
=.|.++|..++| |+++.......|.. -| +.+... |+ .++.|.|-. +|+-.+.|++|.|
T Consensus 76 q~gg~P~~YIvqGk~dsqh~LrVRlgGeGWqPd~--~g-~Giv~~-~~-eqa~FDVv~---------DGnQ~V~pD~Y~l 141 (150)
T PRK15231 76 KIKNTPGAYIIRGQNNSAHKLRIRIGGEDWQPDN--SG-IGMVSH-SD-FTNEFNIYY---------FGNGDIPVDTYLI 141 (150)
T ss_pred hcCCCccEEEEECCCCCcceEEEEecCCCccCCC--CC-CceEee-cc-cceeEEEEE---------eCCeecCCCeEEE
Confidence 446778888888 88887655567765 22 333322 44 555555543 4777889999999
Q ss_pred EEeC
Q 014987 396 HIGD 399 (415)
Q Consensus 396 ~vg~ 399 (415)
.|-.
T Consensus 142 sv~A 145 (150)
T PRK15231 142 SIYA 145 (150)
T ss_pred EEEe
Confidence 8753
No 139
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=20.45 E-value=1.9e+02 Score=24.48 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=31.9
Q ss_pred ccchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHH-----hhCCCCEEEEEE
Q 014987 111 NQLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVA-----KASRGPVVLVLM 173 (415)
Q Consensus 111 ~~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la-----~~~~~pvVvVl~ 173 (415)
.+.+++..+.+.+||.+|++.=. -...+++.=+.+++.+. ...+|+++++..
T Consensus 58 ~d~~~~~~~~l~~aD~iI~~sP~-----------y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~ 114 (152)
T PF03358_consen 58 PDDVQELYDKLKEADGIIFASPV-----------YNGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAV 114 (152)
T ss_dssp SHHHHHHHHHHHHSSEEEEEEEE-----------BTTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEE
T ss_pred cHHHHHHHhceecCCeEEEeecE-----------EcCcCChhhhHHHHHhccccccccCCCEEEEEEE
Confidence 45667888999999999998510 12345555567777774 123555544433
No 140
>PRK09739 hypothetical protein; Provisional
Probab=20.42 E-value=2e+02 Score=25.93 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=34.0
Q ss_pred cchHHHHHHhhcCCEEEEEcCCCcccccccCCCCCCCCChhhHHHHHHHHh----------hCCCCEEEEEECCcee
Q 014987 112 QLIGAAEVAARQADATVLVMGLDQSIEAEFIDRAGLLLPGRQQELVSRVAK----------ASRGPVVLVLMCGGPV 178 (415)
Q Consensus 112 ~~~~~a~~~a~~aD~vIv~~g~~~~~e~eg~dr~~l~l~~~q~~li~~la~----------~~~~pvVvVl~~g~P~ 178 (415)
.+.++..+.+.+||.+|++. + --++.+|..=+.+|+.+.. ..+++++++..+|+++
T Consensus 68 ~~~~~~~~~l~~AD~iV~~~--P---------~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~ 133 (199)
T PRK09739 68 PEVHQLYSELLEHDALVFVF--P---------LWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSK 133 (199)
T ss_pred HHHHHHHHHHHhCCEEEEEC--c---------hhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCCh
Confidence 34567778899999999875 1 1245566655666666531 1245555555555554
No 141
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=20.12 E-value=3.5e+02 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=18.2
Q ss_pred eEEEEEEEEeCCCCCcceEEEEeeeCCCC
Q 014987 315 SLGLHVDIKNTGDMAGTHTLLVFAKPPAG 343 (415)
Q Consensus 315 ~~~vsv~V~NtG~~~G~evvQlY~~~~~~ 343 (415)
.....++|+|..+.+=. |+|.=+.|.+
T Consensus 243 ~~~~~itv~N~~~~~v~--v~v~d~iPvs 269 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVT--VTVEDQIPVS 269 (317)
T ss_pred EEEEEEEEECCCCCCEE--EEEEeCCCCC
Confidence 47889999998865533 5555555544
No 142
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.03 E-value=8.7e+02 Score=24.16 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=12.7
Q ss_pred HHHHHhhcCCEEEEEc
Q 014987 116 AAEVAARQADATVLVM 131 (415)
Q Consensus 116 ~a~~~a~~aD~vIv~~ 131 (415)
...++++.||+|++.+
T Consensus 67 ~v~ea~k~ADvim~L~ 82 (338)
T COG0059 67 TVEEAAKRADVVMILL 82 (338)
T ss_pred cHHHHhhcCCEEEEeC
Confidence 3457789999998876
Done!