Query 014989
Match_columns 415
No_of_seqs 211 out of 1114
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:01:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014989.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014989hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0778 Protease, Ulp1 family 100.0 6E-49 1.3E-53 401.6 16.3 218 124-372 283-500 (511)
2 PLN03189 Protease specific for 100.0 1.3E-46 2.8E-51 381.7 20.4 218 127-372 254-479 (490)
3 COG5160 ULP1 Protease, Ulp1 fa 100.0 2.5E-43 5.3E-48 355.4 16.0 186 150-370 372-557 (578)
4 PF02902 Peptidase_C48: Ulp1 p 100.0 9.4E-31 2E-35 244.4 16.6 194 174-394 1-212 (216)
5 KOG3246 Sentrin-specific cyste 100.0 1.3E-28 2.8E-33 225.7 15.6 192 157-396 14-217 (223)
6 KOG0779 Protease, Ulp1 family 99.9 8.8E-27 1.9E-31 248.0 8.0 242 158-400 351-594 (595)
7 PF03290 Peptidase_C57: Vaccin 97.2 0.00067 1.5E-08 68.2 6.6 91 241-361 229-350 (423)
8 PRK14848 deubiquitinase SseL; 95.8 0.016 3.5E-07 55.5 5.7 33 246-282 191-223 (317)
9 PRK11836 deubiquitinase; Provi 95.4 0.032 6.9E-07 54.5 5.9 45 238-282 214-260 (403)
10 PF00770 Peptidase_C5: Adenovi 93.1 0.32 7E-06 44.3 6.8 82 253-357 33-118 (183)
11 PF03421 YopJ: YopJ Serine/Thr 87.2 3 6.5E-05 38.4 8.1 88 246-356 74-163 (177)
12 PRK15371 effector protein YopJ 74.0 15 0.00032 36.6 8.0 29 329-357 159-187 (287)
13 PHA02130 hypothetical protein 32.4 25 0.00055 27.1 1.2 35 228-262 16-51 (81)
14 PF12252 SidE: Dot/Icm substra 25.5 1.4E+02 0.0031 34.8 6.0 33 247-286 49-88 (1439)
No 1
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-49 Score=401.63 Aligned_cols=218 Identities=28% Similarity=0.498 Sum_probs=182.8
Q ss_pred cccCCccccchhHHHHHHhhccCCeeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceE
Q 014989 124 ESEGSLHIETTEQADEFAECMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCH 203 (415)
Q Consensus 124 ~~~~~~~p~~~~~~~~~~~~~~~~~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ 203 (415)
..+..+.|++.+...+|..++....-. -...+.+++.||.+||.||.+++||||+||||||++|+++.....+ .+++|
T Consensus 283 ~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~i~It~~dl~tl~~~~WLNDevINfYm~ll~ers~~~~~-yp~~h 360 (511)
T KOG0778|consen 283 KKEDSFPPLTEEREAQVQRAFSSRNST-EILVTHFNIDITGKDLQTLRPGNWLNDEVINFYMELLKERSKKDSK-YPKVH 360 (511)
T ss_pred cCccccccccHHHHHHHHHHhccCCcc-cceehhccccccHHHHhhccCccchhHHHHHHHHHHHHhhccccCC-CceEE
Confidence 345677888888888888887632100 0011346699999999999999999999999999999999876654 88999
Q ss_pred EEchhhHHHHHhhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCCC
Q 014989 204 FFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLH 283 (415)
Q Consensus 204 ifnTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~ 283 (415)
+||||||++|.+. +|++|+|||++++||++|+||||||.+.||+|+||++.++ +|.|||||++.
T Consensus 361 ~FnTFFy~kL~~~----------gy~~VkRWTk~v~if~~d~i~vPIH~~vHW~l~vid~r~k------~i~y~DS~~~~ 424 (511)
T KOG0778|consen 361 AFNTFFYTKLVGR----------GYAGVKRWTKKVDIFDKDIIFVPIHLGVHWCLAVIDLREK------TIEYYDSLGGG 424 (511)
T ss_pred EEechhhhhhhhc----------chHHHHhHhhccCccccceeEeeeecCceEEEEEEEcccc------eEEEeeccCCC
Confidence 9999999999862 4899999999999999999999999999999999999998 99999999977
Q ss_pred CcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccc
Q 014989 284 CSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKK 363 (415)
Q Consensus 284 ~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q 363 (415)
.++ ++..|..||.+|+..+.+. + ++-+.|... ...++|||.||+|||||+|+|++|++++.|..|+|
T Consensus 425 ~nr-~~~aL~~Yl~~E~~~k~~~----~--~d~s~w~~~------~~~~iP~Q~Ng~DCG~f~c~~~~~~s~~~p~~ftq 491 (511)
T KOG0778|consen 425 PNR-ICDALAKYLQDESRDKSKK----D--FDVSGWTIE------FVQNIPQQRNGSDCGMFVCKYADYISRDVPLTFTQ 491 (511)
T ss_pred Ccc-hHHHHHHHHHHHHhhhhcC----C--CCccchhhh------hhhccccccCCCccceEEeeechhhccCCCcccCh
Confidence 654 4499999999999775432 2 334578742 35589999999999999999999999999999999
Q ss_pred hhhhhhccc
Q 014989 364 KDLAMFGKR 372 (415)
Q Consensus 364 ~dm~~fr~~ 372 (415)
+|||+||++
T Consensus 492 ~dmp~fR~~ 500 (511)
T KOG0778|consen 492 QDMPYFRKK 500 (511)
T ss_pred hhhHHHHHH
Confidence 999886554
No 2
>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional
Probab=100.00 E-value=1.3e-46 Score=381.66 Aligned_cols=218 Identities=24% Similarity=0.486 Sum_probs=179.9
Q ss_pred CCccccchhHHHHHHhhccCC----eeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCce
Q 014989 127 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 202 (415)
Q Consensus 127 ~~~~p~~~~~~~~~~~~~~~~----~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~ 202 (415)
..+.|++.|+..+|.+++... .++.+ .+.+++||.+||.||.+++||||+|||||++||.+..........++
T Consensus 254 ~~~~pLT~e~~~~V~~al~~~~~~~vlvs~---~~~~i~IT~~DL~~L~Pg~WLNDeVINfYm~LL~er~~~~p~~~~k~ 330 (490)
T PLN03189 254 EPFIPLTREEETEVKRAFSANNRRKVLVTH---ENSNIDITGEILRCLKPGAWLNDEVINLYLELLKEREAREPKKFLKC 330 (490)
T ss_pred ccCcCCCHHHHHHHHHHhcCCCccceeeec---CCCceEEEHHHhhccCCCCccCHHHHHHHHHHHHHhhhcCcccccce
Confidence 568899999999999999742 23322 24789999999999999999999999999999988654444445789
Q ss_pred EEEchhhHHHHHhhhhcCCCCchhHHHHHHHhhhc----ccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEc
Q 014989 203 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKG----VNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLD 278 (415)
Q Consensus 203 ~ifnTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~----~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yD 278 (415)
|+||||||++|... + ....|.+|+||+++ ++||++++||||||.+.||+|+||+++.+ +|.|||
T Consensus 331 h~FNTFFytkL~~~----~--~~ygY~~VrRWTk~kKigv~Lfs~D~IFIPIh~n~HWsLaVId~k~k------~I~yyD 398 (490)
T PLN03189 331 HFFNTFFYKKLVSG----K--SGYDYKAVRRWTTQKKLGYHLIDCDKIFVPIHQEIHWTLAVINKKDQ------KFQYLD 398 (490)
T ss_pred EEEehHHHHHHhhc----C--CcCChHHHHHHhhhcccccccccCceEEeeeecCCeeEEEEEEcCCC------eEEEEe
Confidence 99999999999873 1 11348999999974 57999999999999999999999999988 999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCC
Q 014989 279 SLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAP 358 (415)
Q Consensus 279 SL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p 358 (415)
||++.+. .+++.|+.||..|+..+. +.++ ..+.|... ...++|||.||+|||||||+||++++.|.+
T Consensus 399 SLgg~~~-~vL~~L~rYL~~E~kdK~----g~d~--D~s~W~~~------~~~~vPQQ~NG~DCGVFVL~yAE~~SrG~~ 465 (490)
T PLN03189 399 SLKGRDP-KILDALAKYYVDEVKDKS----EKDI--DVSSWEQE------FVEDLPEQKNGYDCGMFMIKYIDFYSRGLG 465 (490)
T ss_pred CCCCCCH-HHHHHHHHHHHHHHhhhc----CCCc--chhcceec------cCCCCCCCCCCCCHHHHHHHHHHHHcCCCC
Confidence 9998764 588999999999987643 2233 33567531 245899999999999999999999999999
Q ss_pred ccccchhhhhhccc
Q 014989 359 ERLKKKDLAMFGKR 372 (415)
Q Consensus 359 ~~f~q~dm~~fr~~ 372 (415)
..|+|+||+.||++
T Consensus 466 LtFSQeDMp~fRrR 479 (490)
T PLN03189 466 LCFGQEHMPYFRLR 479 (490)
T ss_pred CCcChhhhHHHHHH
Confidence 99999888776554
No 3
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-43 Score=355.43 Aligned_cols=186 Identities=35% Similarity=0.616 Sum_probs=159.7
Q ss_pred ecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhcCCCCchhHHH
Q 014989 150 YYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFI 229 (415)
Q Consensus 150 ~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~kg~d~~~~~~ 229 (415)
+||+. ++.+|+||.+||.+|.+++||||+||||||+||...... ....+++|+||||||++|.+. +|+
T Consensus 372 ~~~~~-~~~~i~IT~~D~~~L~~~~wLNDtIIdFy~k~ls~~sk~-~s~~~~vh~FnTFFYT~Lsrr----------Gy~ 439 (578)
T COG5160 372 CYPFN-DRSSIEITNQDFKRLRNGDWLNDTIIDFYMKLLSKISKN-TSKREQVHLFNTFFYTKLSRR----------GYS 439 (578)
T ss_pred ccccc-CcCcceeehHhhhhhccccchhhHHHHHHHHHHHHhccC-cccccceEEeehhhHHHHHHH----------HhH
Confidence 68886 458999999999999999999999999999999665443 335789999999999999863 589
Q ss_pred HHHHhhhcccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCC
Q 014989 230 KFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSP 309 (415)
Q Consensus 230 ~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~ 309 (415)
+|+||+++++||++++||||||...||+|+||+.+.+ .|.|||||++.+ ..+++.|..|+.+||+....
T Consensus 440 gVrrW~kk~dif~~k~I~iPIni~~HW~l~II~~~~~------~i~~~DSLan~~-~~v~~~L~~Y~ldE~k~~~~---- 508 (578)
T COG5160 440 GVRRWTKKTDIFSKKYIFIPINISYHWFLAIIDNPKK------NILYFDSLANTH-DPVLEFLRSYLLDEYKIQHD---- 508 (578)
T ss_pred HHHHHHhccCccccceEEEEecccceEEEEEeecCcc------eeEEecccccCc-HHHHHHHHHHHHHHHhcccC----
Confidence 9999999999999999999999999999999999887 999999999877 57899999999999865321
Q ss_pred CCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhc
Q 014989 310 SDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFG 370 (415)
Q Consensus 310 ~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr 370 (415)
.+.|. .....+||||.||+|||||||+|++++++++|..|.++|++.+|
T Consensus 509 ------k~~~~------~~~~~~vPqQ~Ng~DCGV~vc~~~~~~~~~~p~~f~~nd~~r~R 557 (578)
T COG5160 509 ------KDPQI------KMKHCKVPQQRNGSDCGVFVCMFIRYFLENPPEQFSKNDRPRAR 557 (578)
T ss_pred ------Cchhh------hhhcCCCCCCCCCCccceEEEEeeeecccCChhhcCccchHHHH
Confidence 12232 24577899999999999999999999999988887776665433
No 4
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification.; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....
Probab=99.97 E-value=9.4e-31 Score=244.42 Aligned_cols=194 Identities=32% Similarity=0.604 Sum_probs=136.4
Q ss_pred CccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhcCCCC----------chhHHHHHHHhhhcc---cC
Q 014989 174 AYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD----------KDSFFIKFRRWWKGV---NI 240 (415)
Q Consensus 174 ~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~kg~d----------~~~~~~~vkrwtk~~---~i 240 (415)
+||||+|||||++||.+....+.....++++|+|+|++.|......-+.. ....+..+.+|++.. ++
T Consensus 1 ~wLnd~iId~y~~~l~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (216)
T PF02902_consen 1 EWLNDSIIDFYLEYLRHRLESENKNSKRVHFFSSFFYQKLTECFKQFKKDKERSKFKWNESKDFYNGVQRWFRKKNKKNL 80 (216)
T ss_dssp --EEHHHHHHHHHHHHHHTCCTHHTSTTEEEE-THHHHHHH----HHHCCH--S-----HHHHCHHHCGGGGTTCCTSTG
T ss_pred CcCCHHHHHHHHHHHHHhhccCccCCCcEEEECceeeeccccccccccccccccccchhhhhHhhhhhhhhhhccccccc
Confidence 59999999999999986654333456899999999999998432110001 023467788999887 99
Q ss_pred CCCcEEEEEEEc-CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCc----HHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 014989 241 FQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCS----LSIFSNIRSFLKEEWNYLKQEVSPSDLPIA 315 (415)
Q Consensus 241 f~kd~I~IPIn~-~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~----~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~ 315 (415)
+++++|+||||. +.||+|+||+.+.+ +|++||||+.... ..++..+..+|..++....... . .
T Consensus 81 ~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~--~ 148 (216)
T PF02902_consen 81 FDKDYIFIPININNNHWVLLVIDLPKK------RIYVYDSLGSSNNDKRYKRVIENIIPFLKREYKKKEGRD----P--D 148 (216)
T ss_dssp GGSSEEEEEEEETTTEEEEEEEETTTT------EEEEE-TTSTSSH-HHHHHHHHHHHHHHHHHHHHHHSSC----T---
T ss_pred cccCEEEEEEechhhccceeEEccccc------EEEEEeccccccccccchhhhhhhhhhhhhccccccccc----c--c
Confidence 999999999999 99999999999998 9999999998775 3567788888887765433211 1 1
Q ss_pred hhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHHHHHHHHHHHh
Q 014989 316 ERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQF 394 (415)
Q Consensus 316 ~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~~I~~lIl~l~ 394 (415)
...|.. ....++|||.|++|||+|||+||++++.+.+....+ .|..+++..+|.++...|.+..
T Consensus 149 ~~~~~~------~~~~~~pqQ~n~~dCGv~vl~~~~~~~~~~~~~~~~---------~l~~~~i~~~r~~~a~~~~e~~ 212 (216)
T PF02902_consen 149 KSPFKI------VRPPNVPQQPNGYDCGVYVLKFMECLLEGPSFDFSQ---------ELTEEDIKNFRKKLAVDLYEEL 212 (216)
T ss_dssp TTTCEE------EEECTS-SSSSSSCHHHHHHHHHHHHHCTHHSTGCC---------SBTGHHHHHHHHHHHH------
T ss_pred cceeee------cccccccCCCCCCCcHHHHHHHHHHHHhCCCCcccc---------cCCHHHHHHHHHHHHhhccccc
Confidence 122321 345689999999999999999999999885443211 1566788888888888776654
No 5
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=225.72 Aligned_cols=192 Identities=24% Similarity=0.414 Sum_probs=141.9
Q ss_pred CCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhcCCCCchhHHHHHHHhhh
Q 014989 157 PESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWK 236 (415)
Q Consensus 157 ~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk 236 (415)
.+.+.++.+|+..|.++.||||.+|+||.+||.+...... ...|++++- +...+.+.+.+ +.+.....
T Consensus 14 y~dv~Lr~sDVdlL~~p~wlnD~~I~F~~e~l~~~~~~s~---~~~~ll~P~----~t~~l~~~~~~-----~e~~~~~~ 81 (223)
T KOG3246|consen 14 YFDVSLRQSDVDLLQPPEWLNDRLIDFYYEYLEHRRSRSE---PDLHLLRPS----LTFFLRHAPNP-----EEIAMVLD 81 (223)
T ss_pred eeehhhhhhhhhhcCCCchhhhhHHHHHHHHHHHhhcccC---cchhccCHH----HHHHHHhCCCc-----HHHHHhcC
Confidence 4779999999999999999999999999999999876543 235666543 33332222221 23455566
Q ss_pred cccCCCCcEEEEEEEcC---------CceEEEEEEcCCCCCCCCCeEEEEcCCCCCCc---HHHHHHHHHHHHHHHHHhh
Q 014989 237 GVNIFQKSYVLIPIHED---------VHWSLVIICIPDKEDESGPIILHLDSLKLHCS---LSIFSNIRSFLKEEWNYLK 304 (415)
Q Consensus 237 ~~~if~kd~I~IPIn~~---------~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~---~~i~~~I~~~L~~e~~~~~ 304 (415)
..++.+|++||+|||++ +||+|+|+..+++ +++||||+.+.+. +.+.++++.+|+.....
T Consensus 82 pl~l~~k~~iflpiNDn~~~~~~~GGsHWSLLV~sr~~~------~f~hyDS~~n~nt~~a~~l~~kl~~ll~~~~~~-- 153 (223)
T KOG3246|consen 82 PLDLNDKDFIFLPINDNSNVTRASGGSHWSLLVFSRPDG------KFYHYDSLSNGNTKDAKSLMKKLRALLKKKFAK-- 153 (223)
T ss_pred hhhcCCCceEEEEecCCCcccccCCCcceEEEEEEeeCC------cEEEeecccCCCcHHHHHHHHHHHHHHhhhhhh--
Confidence 77999999999999984 6999999999998 9999999988775 45666666666642211
Q ss_pred ccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHH
Q 014989 305 QEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRI 384 (415)
Q Consensus 305 ~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~ 384 (415)
..+..+|||.||||||+|||.+.+.++... .+..|+. ......+..|.++|+
T Consensus 154 -----------------------~~~~~~~qQqNgyDCG~hV~~~t~~l~~~~----~~~~~~~-~~~~~~~~~i~~lr~ 205 (223)
T KOG3246|consen 154 -----------------------RVECKCLQQQNGYDCGLHVCCNTRVLAERL----LRCPYAT-SSQLLVVDLIKALRE 205 (223)
T ss_pred -----------------------cccccChhhhcCCchhHHHHHHHHHHHHHH----hcccccc-ccchhhHHHHHHHHH
Confidence 125679999999999999999999888652 2222221 122345678899999
Q ss_pred HHHHHHHHHhhh
Q 014989 385 KIRNLLKKQFQI 396 (415)
Q Consensus 385 ~I~~lIl~l~~~ 396 (415)
.|+.||..|-..
T Consensus 206 ~l~~LI~slg~~ 217 (223)
T KOG3246|consen 206 ELLDLIQSLGSI 217 (223)
T ss_pred HHHHHHHHhCcc
Confidence 999999988643
No 6
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.8e-27 Score=248.01 Aligned_cols=242 Identities=36% Similarity=0.649 Sum_probs=206.3
Q ss_pred CCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhcCCCC--chhHHHHHHHhh
Q 014989 158 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGD--KDSFFIKFRRWW 235 (415)
Q Consensus 158 ~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~kg~d--~~~~~~~vkrwt 235 (415)
..+.++..|+.||.++.+|||.|++||++|+.............+|+|++|||..+.+.+..++.+ ....+..+++|+
T Consensus 351 ~~~~v~~~Dl~cl~~~e~L~d~i~dfyl~~i~~~~l~~~~~s~~~h~f~tffyk~l~~~~~~~~~d~~~~~~~~~~~~~~ 430 (595)
T KOG0779|consen 351 QSHQVNNNDLVCLEEGEFLNDTIKDFYLEYIRQYLLSQKELSNDRHIFSTFFYKRLCRKLRQKSNDQIQDNRAVRLRTWT 430 (595)
T ss_pred cccceeccchhhccccchhhhhhhhhhhHHHHHhhhcccccCcchhhhhhHHHhhhhhhhhhhhhhhhhccccCceeeee
Confidence 367999999999999999999999999999999887655568899999999999999987766666 445567889999
Q ss_pred hcccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 014989 236 KGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIA 315 (415)
Q Consensus 236 k~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~ 315 (415)
+.+++|.++||++|+|...||.|++|+++..+.+........+++..+........+..++..++.+.+......+.++.
T Consensus 431 ~~~d~~~k~yi~~P~~E~~hw~laiic~p~~e~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (595)
T KOG0779|consen 431 RHFDLFNKDYVFVPTHERFHWKLAIICNPDLETETPRPRLELLILKLSADFPIVENILDFMKVASIYNNELIVTEDLELE 510 (595)
T ss_pred eccccccceeEEecCchHhhhhccccccCccccCccccchhhhhhccccccchhhhhhhhhhhcccccCccccccccccc
Confidence 99999999999999999999999999999987777778888888887766667788999999888776554334566666
Q ss_pred hhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHHHHHHHHHHHhh
Q 014989 316 ERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQ 395 (415)
Q Consensus 316 ~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~~I~~lIl~l~~ 395 (415)
+..|..+|+.....++. |||.|..|||+|++.|++.++.+++.+++..+...+...||.|.++.++|..++++++.|+.
T Consensus 511 ~~~~~~~~~~~s~~v~~-p~q~n~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~r~~~~~l~~ 589 (595)
T KOG0779|consen 511 EELPRRLPRGKSETVRE-PQQNNDVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPKEILKFRDEIRNLGRKLFT 589 (595)
T ss_pred ccccccCcccccccccc-cCccCcccchhhHHHHHHHhhhChhhhcccccccccccccCCchHHhhhhhhhhcccccccc
Confidence 77788888766544444 99999999999999999999999998888777777767799999999999999999999998
Q ss_pred hhccc
Q 014989 396 ISSAE 400 (415)
Q Consensus 396 ~~~~~ 400 (415)
...++
T Consensus 590 ~~~~~ 594 (595)
T KOG0779|consen 590 SQSSE 594 (595)
T ss_pred ccCCC
Confidence 76543
No 7
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This is a group of cysteine peptidases which constitute MEROPS peptidase family C57 (clan CE). The type example is vaccinia virus I7 processing peptidase (vaccinia virus); protein I7 is expressed in the late phase of infection [].
Probab=97.22 E-value=0.00067 Score=68.15 Aligned_cols=91 Identities=21% Similarity=0.277 Sum_probs=64.7
Q ss_pred CCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcH------------------------------HHHH
Q 014989 241 FQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCSL------------------------------SIFS 290 (415)
Q Consensus 241 f~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~------------------------------~i~~ 290 (415)
-++.++.+|++...||..+|+|...+ .+.+|||-|..+.. .-++
T Consensus 229 ~~~RyvmFgfcY~~Hwkc~IfDk~~~------~v~FydSgG~~P~efhhy~nfyFysfs~gfn~n~~~~s~l~n~n~dID 302 (423)
T PF03290_consen 229 SKKRYVMFGFCYMSHWKCCIFDKEKK------IVYFYDSGGNIPEEFHHYKNFYFYSFSDGFNRNNKSTSNLDNENCDID 302 (423)
T ss_pred ccccEEEeeeeehhcceEEEEecccc------EEEEEcCCCCCHHHcCcCCceEEEEccCccccCCCcccccccccCchH
Confidence 35789999999999999999998877 88889998754310 1235
Q ss_pred HHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCC-cCCCCCCCChHHHHHHHHHHHHhhCCccc
Q 014989 291 NIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIP-VPQQKNDYDCGLFVLFFMERFMEEAPERL 361 (415)
Q Consensus 291 ~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~-vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f 361 (415)
.|.+|+...+.... -..+ --.|--.++||+|++.||......+|..|
T Consensus 303 VLfrfF~d~f~~~~------------------------gciNvevnQl~eseCGMF~~iFm~~c~~~ppk~f 350 (423)
T PF03290_consen 303 VLFRFFEDSFGVKY------------------------GCINVEVNQLLESECGMFISIFMILCTLTPPKGF 350 (423)
T ss_pred HHHHHHHhhcccce------------------------eEEEhhhhhhcccccchHHHHHHHHHHccCchhH
Confidence 56666665432110 0111 12577889999999999998888878655
No 8
>PRK14848 deubiquitinase SseL; Provisional
Probab=95.84 E-value=0.016 Score=55.45 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=23.8
Q ss_pred EEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 014989 246 VLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 282 (415)
Q Consensus 246 I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~ 282 (415)
=+||||.+.||.|+++..-.. +...++|.|+..
T Consensus 191 evF~INtg~HWil~~~~Ki~~----kiKC~iFNs~~~ 223 (317)
T PRK14848 191 EVFLINTGDHWLLCLFYKLAE----KIKCLIFNTYYD 223 (317)
T ss_pred eEEEecCCCcEEEEEhHHhhh----hceEEEeecHhh
Confidence 359999999999998754332 135677888754
No 9
>PRK11836 deubiquitinase; Provisional
Probab=95.37 E-value=0.032 Score=54.54 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=30.5
Q ss_pred ccCCCCcEEEEEEEcCCceEEEEEEcCCCC--CCCCCeEEEEcCCCC
Q 014989 238 VNIFQKSYVLIPIHEDVHWSLVIICIPDKE--DESGPIILHLDSLKL 282 (415)
Q Consensus 238 ~~if~kd~I~IPIn~~~HW~L~VI~~~~~~--~~~~~~I~~yDSL~~ 282 (415)
..++-++.=+||||.+.||.|+++..-..+ ...+...++|.|+..
T Consensus 214 ~~~~~k~~elFpINtg~HWil~~l~Ki~~~~~~~ekiKC~IFNs~~~ 260 (403)
T PRK11836 214 DPSWPKEVQLFPINTGGHWILVSLQKIVNEKNNTQQIKCVIFNSLRA 260 (403)
T ss_pred CCCCcccceEEEecCCCcEEEEEeHHhhhcccccceeEEEEEecHhh
Confidence 345567788999999999999988643321 112335677888753
No 10
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=93.06 E-value=0.32 Score=44.28 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=39.7
Q ss_pred CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhcc-C-C-CCCCccchhhhccCCCccc-c
Q 014989 253 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQE-V-S-PSDLPIAERIWQHLPRRID-D 328 (415)
Q Consensus 253 ~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~-~-~-~~d~~~~~~~w~~lp~~i~-~ 328 (415)
+.||..+..+.... +++.||.+|-++.+ |+++-.-+++.+.+. + . ..| +.++ +
T Consensus 33 GvHWlA~Aw~P~s~------t~YmFDPfGfsd~~-----L~qiY~FeYe~llrRSAL~~~~d------------RCv~Lv 89 (183)
T PF00770_consen 33 GVHWLAFAWDPRSR------TFYMFDPFGFSDQK-----LKQIYQFEYEGLLRRSALSSTPD------------RCVTLV 89 (183)
T ss_dssp -S-EEEEEEETTTT------EEEEE-TT---HHH-----HHHHH----HHHHHHHHHHH-TT------------SEEEEE
T ss_pred ceeEEEEEecCCcc------eEEEeCCCCCCHHH-----HHHHHhhhHHHHHHHHhhcCCCC------------ceEEEE
Confidence 59999999998877 99999999987532 222222222221100 0 0 011 1222 1
Q ss_pred CCCCcCCCCCCCChHHHHHHHHHHHHhhC
Q 014989 329 RIIPVPQQKNDYDCGLFVLFFMERFMEEA 357 (415)
Q Consensus 329 ~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~ 357 (415)
...+.-|=.++--||+|.|.|..+|...+
T Consensus 90 kstqtVQ~p~SaaCGLFC~lFL~aF~~~p 118 (183)
T PF00770_consen 90 KSTQTVQCPCSAACGLFCCLFLHAFVHYP 118 (183)
T ss_dssp EE-EE-S-TT---HHHHHHHHHHHHHH-T
T ss_pred eccceeeccCchhHHHHHHHHHHHHHhCC
Confidence 22234455678899999999999999874
No 11
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=87.24 E-value=3 Score=38.45 Aligned_cols=88 Identities=17% Similarity=0.332 Sum_probs=50.6
Q ss_pred EEEEEEc-CCceEEEEEE-cCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCC
Q 014989 246 VLIPIHE-DVHWSLVIIC-IPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLP 323 (415)
Q Consensus 246 I~IPIn~-~~HW~L~VI~-~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp 323 (415)
.++|... ..|-..+=|- .++ .++.|++++|-........ +..+.........+ .+|
T Consensus 74 ~Iv~~~~~~~H~~a~Dvr~~~~----~k~SlI~~Epa~~~~~~~~---l~~~~~~~~~~~~~---------------~~~ 131 (177)
T PF03421_consen 74 AIVNLGGDGIHHVALDVRHTPN----GKPSLIVFEPASFYGMKPA---LAGYTKLAEEARQK---------------LLP 131 (177)
T ss_pred EEEeCCCCCCcEEEEEEeecCC----CCceEEEEccccccCCcch---hhhHHHHHHHHHhc---------------cCC
Confidence 3455443 5676655554 333 3569999999864432111 22222221111100 011
Q ss_pred CccccCCCCcCCCCCCCChHHHHHHHHHHHHhh
Q 014989 324 RRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEE 356 (415)
Q Consensus 324 ~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~ 356 (415)
.......++.-|+..+|||+|.|.+|..+...
T Consensus 132 -~~~~~~ie~diQkS~~dC~IFsLs~AkK~~~~ 163 (177)
T PF03421_consen 132 -NAKFAVIEMDIQKSPSDCGIFSLSLAKKMYKE 163 (177)
T ss_pred -CcEEEEEecccccCcCcchhhHHHHHHHHhhc
Confidence 12244667899999999999999999998765
No 12
>PRK15371 effector protein YopJ; Provisional
Probab=74.04 E-value=15 Score=36.55 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=24.1
Q ss_pred CCCCcCCCCCCCChHHHHHHHHHHHHhhC
Q 014989 329 RIIPVPQQKNDYDCGLFVLFFMERFMEEA 357 (415)
Q Consensus 329 ~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~ 357 (415)
.....--|+-.+|||+|.|.+|..+....
T Consensus 159 avie~d~QkS~~dC~mFSL~~AkK~~~e~ 187 (287)
T PRK15371 159 SMVEMDIQRSSSECGIFSLALAKKLYLER 187 (287)
T ss_pred EEEecccccCcccchhhhHHHHHHHhhhh
Confidence 34567789999999999999999988763
No 13
>PHA02130 hypothetical protein
Probab=32.40 E-value=25 Score=27.07 Aligned_cols=35 Identities=20% Similarity=0.540 Sum_probs=29.6
Q ss_pred HHHHHHhhh-cccCCCCcEEEEEEEcCCceEEEEEE
Q 014989 228 FIKFRRWWK-GVNIFQKSYVLIPIHEDVHWSLVIIC 262 (415)
Q Consensus 228 ~~~vkrwtk-~~~if~kd~I~IPIn~~~HW~L~VI~ 262 (415)
++.++.|.. +.+-++-|++-||.-...||-|+-++
T Consensus 16 ~~sl~~wl~~~~dswdddil~ipfkstv~w~lcp~~ 51 (81)
T PHA02130 16 WESLREWLDERFDSWDDDILSIPFKSTVYWDLCPYA 51 (81)
T ss_pred HHHHHHHHHhcccccccchhcccccceeeeccCcch
Confidence 567888985 56889999999999999999998654
No 14
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=25.53 E-value=1.4e+02 Score=34.82 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=23.6
Q ss_pred EEEEEc-------CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcH
Q 014989 247 LIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSL 286 (415)
Q Consensus 247 ~IPIn~-------~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~ 286 (415)
|+||-. ..||..+|= -+++ ..+.||.||.....
T Consensus 49 fmpvltgv~p~~~sghwimlik-g~gn------~y~lfdplg~~sg~ 88 (1439)
T PF12252_consen 49 FMPVLTGVSPRQDSGHWIMLIK-GQGN------QYYLFDPLGKTSGE 88 (1439)
T ss_pred CceeecCcCCCCcCceeEEEEE-cCCC------ceEEeccccccccc
Confidence 566654 599987764 3444 89999999976543
Done!