Query 014989
Match_columns 415
No_of_seqs 211 out of 1114
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 04:42:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014989.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014989hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eay_A Sentrin-specific protea 100.0 1.4E-50 4.6E-55 399.4 21.8 242 143-399 16-319 (323)
2 1th0_A SMT3-, sentrin-specific 100.0 1E-43 3.5E-48 336.5 18.5 210 129-371 2-214 (226)
3 2xph_A Sentrin-specific protea 100.0 3.8E-43 1.3E-47 335.1 20.0 211 127-371 12-226 (238)
4 1euv_A ULP1 protease; SUMO hyd 100.0 4.1E-41 1.4E-45 317.7 20.6 204 130-392 5-217 (221)
5 2bkr_A Sentrin-specific protea 100.0 3.1E-40 1.1E-44 309.5 16.6 193 158-395 9-211 (212)
6 2oix_A Xanthomonas outer prote 100.0 9.1E-35 3.1E-39 267.5 11.9 180 172-393 1-181 (186)
7 4ekf_A Adenain; alpha and beta 94.8 0.66 2.2E-05 41.7 13.7 86 253-361 52-141 (204)
8 1xg0_C B-phycoerythrin beta ch 16.5 1.9E+02 0.0065 25.3 5.3 72 340-414 84-159 (177)
9 2vml_B Phycocyanin beta chain; 10.9 2.5E+02 0.0087 24.3 4.4 66 341-414 85-154 (172)
10 1c52_A Cytochrome-C552; electr 10.0 1.6E+02 0.0054 23.6 2.6 47 340-386 76-128 (131)
No 1
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-50 Score=399.42 Aligned_cols=242 Identities=26% Similarity=0.542 Sum_probs=196.3
Q ss_pred hccCCeeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhc--C
Q 014989 143 CMIDAKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSH--K 220 (415)
Q Consensus 143 ~~~~~~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~--k 220 (415)
+.....|+||+++++++++|+.+||.||.+++||||+|||||++||..+.... ...+++|+||||||++|...... .
T Consensus 16 ~~~~~~~~yP~~~~k~~i~it~~Dl~~L~~~~wLND~IInFyl~~L~~e~~~~-~~~~r~h~FnSFFy~kL~~~~~~~~~ 94 (323)
T 3eay_A 16 GLVQKLIVYPPPPTKGGLGVTNEDLECLEEGEFLNDVIIDFYLKYLILEKASD-ELVERSHIFSSFFYKCLTRKENNLTE 94 (323)
T ss_dssp -CCCEEEEESCTTSSSCEEEEHHHHHTTSTTCCCCHHHHHHHHHHHHHHTSCH-HHHHTEEECCTHHHHHHSCC------
T ss_pred CCcceeEEeCCCCCCCceEEEHHHHHhhCCCCCcCHHHHHHHHHHHHhhhccc-cccCcEEEEchHHHHHHHhccccccc
Confidence 45557899999999999999999999999999999999999999997554321 13468999999999999863110 0
Q ss_pred CCC----chhHHHHHHHhhhcccCCCCcEEEEEEEcCCceEEEEEEcCCCCC----------------------------
Q 014989 221 GGD----KDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKED---------------------------- 268 (415)
Q Consensus 221 g~d----~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~---------------------------- 268 (415)
+.. ....|.+|+|||+++|||++|+||||||.+.||+|+|||+|..+.
T Consensus 95 ~~~~~s~~~~~y~~VrrWtrkvdlf~kD~I~IPIn~~~HW~LaVI~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 174 (323)
T 3eay_A 95 DNPNLSMAQRRHKRVRTWTRHINIFNKDYIFVPVNESSHWYLAVICFPWLEEAVYEDFPQTVSQQSQAQQSQNDNKTIDN 174 (323)
T ss_dssp --CCSCHHHHHHTTSGGGGTTCCGGGCSEEEEEEEETTEEEEEEEECTTCSSCBCC------------------------
T ss_pred ccccchhHHHHHHHHHHHHhhcccccCCEEEEecCCCCceEEEEEecCCccccccccccccccccccccccccccccccc
Confidence 000 124689999999999999999999999999999999999996410
Q ss_pred ----------------------------CCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhc
Q 014989 269 ----------------------------ESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQ 320 (415)
Q Consensus 269 ----------------------------~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~ 320 (415)
.+.|+|+|||||+++....++..|+.||..||+.+.+.. ..++...|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~pcIl~lDSL~~~~~~~~~~~Lr~YL~~E~~~k~~~~----~~f~~~~~~ 250 (323)
T 3eay_A 175 DLRTTSTLSLSAEDSQSTESNMSVPKKMCKRPCILILDSLKAASVQNTVQNLREYLEVEWEVKLKTH----RQFSKTNMV 250 (323)
T ss_dssp -------------------------CCCCBCSEEEEECSSCCSSHHHHHHHHHHHHHHHHHHHHSSC----CCCCTTTSC
T ss_pred ccccccccccccccccccccccccccccCCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHhhcCCC----cCCCHhHce
Confidence 135799999999998777899999999999999865432 223333443
Q ss_pred cCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHHHHHHHHHHHhhhhcc
Q 014989 321 HLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQFQISSA 399 (415)
Q Consensus 321 ~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~~I~~lIl~l~~~~~~ 399 (415)
...+.+|||.|++|||||||+||++|+.+.|..|++ ++....||++++|..+|.+|++||++|..+...
T Consensus 251 -------~~~~~~P~Q~N~~DCGvfvl~~~e~~~~~~~~~f~~---~~~~~~wf~~~~i~~kR~ei~~LI~~L~~~q~~ 319 (323)
T 3eay_A 251 -------DLCPKVPKQDNSSDCGVYLLQYVESFFKDPIVNFEL---PIHLEKWFPRHVIKTKREDIRELILKLHLQQQK 319 (323)
T ss_dssp -------EECCBCCCCCSTTCHHHHHHHHHHHHHHSCCCCCCS---SCBCTTSSCHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred -------eccCCCCCcCCCCcHHHHHHHHHHHHHhCCcccccc---ccccccCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 234579999999999999999999999998888764 455678999999999999999999999877643
No 2
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=100.00 E-value=1e-43 Score=336.47 Aligned_cols=210 Identities=29% Similarity=0.521 Sum_probs=172.8
Q ss_pred ccccchhHHHHHHhhccC---CeeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEE
Q 014989 129 LHIETTEQADEFAECMID---AKIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFF 205 (415)
Q Consensus 129 ~~p~~~~~~~~~~~~~~~---~~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~if 205 (415)
+.|++.|+..++..++.. ..++. ...++.|+.+|+.+|.+++||||+|||||++||.++..+. ..+++|+|
T Consensus 2 ~~~lt~~~~~~~~~~l~~~~~~~~~~----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~~~f 75 (226)
T 1th0_A 2 LLELTEDMEKEISNALGHGPQDEILS----SAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQ--GYPALHVF 75 (226)
T ss_dssp CCCCCHHHHHHHHHHHSSSCTTCEEE----EETTEEEEHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHH--TCCCEEEC
T ss_pred CCCCCHHHHHHHHHHhccCCccceee----ccCCeEEEHHHHhhcCCCCccChHHHHHHHHHHHHhhhhc--cCCcEEEE
Confidence 458899999999998852 12221 2478999999999999999999999999999998765321 24689999
Q ss_pred chhhHHHHHhhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCc
Q 014989 206 NTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKLHCS 285 (415)
Q Consensus 206 nTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~ 285 (415)
+||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+.+.+ +|+|||||++.+
T Consensus 76 ~s~f~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~l~vi~~~~~------~i~~~DSl~~~~- 138 (226)
T 1th0_A 76 STFFYPKLKSG----------GYQAVKRWTKGVNLFEQEIILVPIHRKVHWSLVVIDLRKK------CLKYLDSMGQKG- 138 (226)
T ss_dssp CTTHHHHHHHH----------TGGGTGGGGTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCCCC-
T ss_pred eHHHHHHhhhc----------ccHHHHHHhhcCCcccCCEEEEeEEeCcEEEEEEEEcCCC------ceEEEcCCCCCc-
Confidence 99999999763 3678999999999999999999999999999999999987 999999999876
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchh
Q 014989 286 LSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKD 365 (415)
Q Consensus 286 ~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~d 365 (415)
..+.+.|..||..++..+.+ .+ +....|+.. .....++|||.||+|||||||+||++++.+.|..|+|++
T Consensus 139 ~~~~~~l~~~l~~e~~~k~~----~~--~~~~~w~~~----~~~~~~~PqQ~Ng~DCGvfvl~~~~~~~~~~~~~f~q~d 208 (226)
T 1th0_A 139 HRICEILLQYLQDESKTKRN----SD--LNLLEWTHH----SMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQ 208 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTS----CC--CCGGGCEEE----ECCTTTSCCCCSSSCHHHHHHHHHHHHTTTCCCCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcC----CC--CCcccceec----cccCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCccChhh
Confidence 46788999999998765432 22 334567642 123568999999999999999999999999988888877
Q ss_pred hhhhcc
Q 014989 366 LAMFGK 371 (415)
Q Consensus 366 m~~fr~ 371 (415)
|+.||+
T Consensus 209 m~~~R~ 214 (226)
T 1th0_A 209 MPLFRK 214 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766544
No 3
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=100.00 E-value=3.8e-43 Score=335.09 Aligned_cols=211 Identities=27% Similarity=0.469 Sum_probs=174.0
Q ss_pred CCccccchhHHHHHHhhccCC----eeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCce
Q 014989 127 GSLHIETTEQADEFAECMIDA----KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDC 202 (415)
Q Consensus 127 ~~~~p~~~~~~~~~~~~~~~~----~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~ 202 (415)
..+.|++.|+..+|..++... .++ .+.++.|+.+|+.+|.+++||||+|||||++||.++.... ..+++
T Consensus 12 ~~~~~lt~e~~~~v~~~l~~~~~~~vl~-----~~~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~--~~~~~ 84 (238)
T 2xph_A 12 DEFPEITEEMEKEIKNVFRNGNQDEVLS-----EAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEK--GLPSV 84 (238)
T ss_dssp CCCCCCCHHHHHHHHHHSSSSCTTCCCE-----EETTEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHHTTST--TSCCE
T ss_pred cCCCCCCHHHHHHHHHHHcCCChhheee-----cCCCcEEeHHHHhhcCCCCccCHHHHHHHHHHHHHhhhhc--CCCce
Confidence 347789999999999988631 122 2468999999999999999999999999999998876432 35789
Q ss_pred EEEchhhHHHHHhhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEEEcCCceEEEEEEcCCCCCCCCCeEEEEcCCCC
Q 014989 203 HFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIHEDVHWSLVIICIPDKEDESGPIILHLDSLKL 282 (415)
Q Consensus 203 ~ifnTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn~~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~ 282 (415)
|+|+||||++|... .|.+|++|++++++|++++||||||.+.||+|+||+.+.+ +|+|||||++
T Consensus 85 ~~f~sff~~~l~~~----------~~~~v~~w~~~~~l~~~~~i~iPin~~~HW~L~vi~~~~~------~i~~~DSl~~ 148 (238)
T 2xph_A 85 HAFNTFFFTKLKTA----------GYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKK------NITYYDSMGG 148 (238)
T ss_dssp EECCTTTTHHHHTT----------CHHHHTTTTTTCCGGGSSEEEEEEEETTEEEEEEEETTTT------EEEEECTTCC
T ss_pred eeeecHHHHHhhhc----------ccHHHHHHhccCCcccCCEEEEcccCCCceEEEEEEcccc------eEEEeecccC
Confidence 99999999999752 3789999999999999999999999999999999999987 9999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCcccc
Q 014989 283 HCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLK 362 (415)
Q Consensus 283 ~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~ 362 (415)
.+. ..+..|..||..++..+.+. .+....|+..+ ....++|||.||+|||||||+||++++.+.|..|+
T Consensus 149 ~~~-~~~~~l~~~L~~e~~~k~~~------~~~~~~w~~~~----~~~~~~PqQ~Ng~DCGvfvl~~~e~~~~~~~~~f~ 217 (238)
T 2xph_A 149 INN-EACRILLQYLKQESIDKKRK------EFDTNGWQLFS----KKSQEIPQQMNGSDCGMFACKYADCITKDRPINFT 217 (238)
T ss_dssp CCH-HHHHHHHHHHHHHHHHHHCS------CCCCTTCEEEE----CCSSSSCCCSBGGGHHHHHHHHHHHHHTTCCCCCC
T ss_pred CCH-HHHHHHHHHHHHHHHHhcCC------CcCcccceecc----cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcC
Confidence 764 56788999999988765322 22335676421 24578999999999999999999999999888888
Q ss_pred chhhhhhcc
Q 014989 363 KKDLAMFGK 371 (415)
Q Consensus 363 q~dm~~fr~ 371 (415)
|++|+.||+
T Consensus 218 q~dm~~~R~ 226 (238)
T 2xph_A 218 QQHMPYFRK 226 (238)
T ss_dssp GGGHHHHHH
T ss_pred hhhHHHHHH
Confidence 777765443
No 4
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=100.00 E-value=4.1e-41 Score=317.66 Aligned_cols=204 Identities=25% Similarity=0.447 Sum_probs=167.0
Q ss_pred cccchhHHHHHHhhccCC---eeecCCCCCCCCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEc
Q 014989 130 HIETTEQADEFAECMIDA---KIYYPSRVDPESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN 206 (415)
Q Consensus 130 ~p~~~~~~~~~~~~~~~~---~i~yp~~~~~~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifn 206 (415)
-|++.|+..+|.+++... .++ ..+++.|+.+|+.+|.+++||||+|||||++||.+.. +++|+|+
T Consensus 5 ~~l~~~~~~~v~~~l~~~~~~~l~-----~~~~i~i~~~Dl~~L~~~~wLND~vI~fy~~~l~~~~-------~~~~~f~ 72 (221)
T 1euv_A 5 PELNEKDDDQVQKALASRENTQLM-----NRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKST-------PNTVAFN 72 (221)
T ss_dssp CCCCHHHHHHHHHHHTCSSCCEEE-----EETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHHS-------TTEEECC
T ss_pred CCCCHHHHHHHHHHhcCCCCeeee-----cCCCeEEEHHHHhhhcCCCCCCHHHHHHHHHHHHhcC-------CCeEEEE
Confidence 357888898998888642 122 3578999999999999999999999999999998752 4799999
Q ss_pred hhhHHHHHhhhhcCCCCchhHHHHHHHhhh--cccCCCCcEEEEEEEc-CCceEEEEEEcCCCCCCCCCeEEEEcCCCCC
Q 014989 207 TYFYSKLKEAVSHKGGDKDSFFIKFRRWWK--GVNIFQKSYVLIPIHE-DVHWSLVIICIPDKEDESGPIILHLDSLKLH 283 (415)
Q Consensus 207 TfF~~~L~~~~~~kg~d~~~~~~~vkrwtk--~~~if~kd~I~IPIn~-~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~ 283 (415)
||||++|.+. +|..|++|++ ++++|++++||||||. +.||+|+||+.+.+ +|+|||||+..
T Consensus 73 s~f~~~l~~~----------~~~~v~rw~~~~~~~~~~~~~i~iPin~~~~HW~l~vi~~~~~------~i~~~DSl~~~ 136 (221)
T 1euv_A 73 SFFYTNLSER----------GYQGVRRWMKRKKTQIDKLDKIFTPINLNQSHWALGIIDLKKK------TIGYVDSLSNG 136 (221)
T ss_dssp THHHHHHHHH----------TGGGTTTTTGGGTSCGGGCSEEEEEEEETTTEEEEEEEETTTT------EEEEECSSCCS
T ss_pred cHHHHHhhhh----------ccHHHHHHHHhccCCcccCCEEEEEEEcCCCeEEEEEEEcCCC------EEEEEecCCCC
Confidence 9999999762 3678999997 6799999999999998 59999999999987 99999999865
Q ss_pred CcH---HHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCcc
Q 014989 284 CSL---SIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPER 360 (415)
Q Consensus 284 ~~~---~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~ 360 (415)
.+. .+++.|+.||..++..+. + ..|. ....++|||.||+|||||||+||++++.+.|..
T Consensus 137 ~~~~~~~i~~~l~~~l~~e~~~~~----~-------~~~~-------~~~~~~PqQ~N~~DCGvfv~~~~~~~~~~~~l~ 198 (221)
T 1euv_A 137 PNAMSFAILTDLQKYVMEESKHTI----G-------EDFD-------LIHLDCPQQPNGYDCGIYVCMNTLYGSADAPLD 198 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSS----C-------TTCE-------EEEECCCCCSSSSTHHHHHHHHHHHHHTTCCCC
T ss_pred CcchHHHHHHHHHHHHHHHHHHhc----C-------CCce-------EeecCCCCCCCCcCHHHHHHHHHHHHhCCCCCC
Confidence 432 577888899987754321 1 1232 234689999999999999999999999997765
Q ss_pred ccchhhhhhcccCcCHHHHHHHHHHHHHHHHH
Q 014989 361 LKKKDLAMFGKRWFRPEEASGLRIKIRNLLKK 392 (415)
Q Consensus 361 f~q~dm~~fr~~~f~~~~i~~~R~~I~~lIl~ 392 (415)
| +++++..+|++|+.+|++
T Consensus 199 f-------------~~~d~~~~R~~i~~~Il~ 217 (221)
T 1euv_A 199 F-------------DYKDAIRMRRFIAHLILT 217 (221)
T ss_dssp C-------------CHHHHHHHHHHHHHHHHT
T ss_pred c-------------CHHHHHHHHHHHHHHHHh
Confidence 4 456777899999998875
No 5
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=100.00 E-value=3.1e-40 Score=309.51 Aligned_cols=193 Identities=18% Similarity=0.264 Sum_probs=152.7
Q ss_pred CCeEEecchhhccCCCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEc---hhhHHHHHhhhhcCCCCchhHHHHHHHh
Q 014989 158 ESVEICYTDINHLAPAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFN---TYFYSKLKEAVSHKGGDKDSFFIKFRRW 234 (415)
Q Consensus 158 ~~i~It~~Dl~~L~~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifn---TfF~~~L~~~~~~kg~d~~~~~~~vkrw 234 (415)
+++.|+.+|+.+|.+++||||+|||||++||.++..++. .+++++|+ ||||..+.. +..|++|
T Consensus 9 ~~~~l~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~--~~~~~~~~p~~s~f~~~~~~------------~~~v~~~ 74 (212)
T 2bkr_A 9 MDSLLRQSDVSLLDPPSWLNDHIIGFAFEYFANSQFHDS--SDHVSFISPEVTQFIKCTSN------------PAEIAMF 74 (212)
T ss_dssp TTEEEEHHHHHTTSTTSCCBHHHHHHHHHHHHHTTTGGG--TTTEEEECHHHHHHHHHCCC------------HHHHHHH
T ss_pred CCEEEeHHHHhhcCCCCCcCHHHHHHHHHHHHHhhccCC--CCcEEEEChHHHHHHHhCCC------------HHHHHHH
Confidence 689999999999999999999999999999999875432 47899999 999854421 5689999
Q ss_pred hhcccCCCCcEEEEEEEc-------CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccC
Q 014989 235 WKGVNIFQKSYVLIPIHE-------DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEV 307 (415)
Q Consensus 235 tk~~~if~kd~I~IPIn~-------~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~ 307 (415)
+++++++++++||||||. +.||+|+||+.+.+ +|+|||||++.+.. ....+..+|...... +.
T Consensus 75 ~~~~~l~~~~~i~iPIn~n~~~~~~~~HW~L~vi~~~~~------~i~~~DSl~~~n~~-~~~~l~~~l~~~l~~---~~ 144 (212)
T 2bkr_A 75 LEPLDLPNKRVVFLAINDNSNQAAGGSHWSLLVYLQDKN------SFFHYDSHSRSNSV-HAKQVAEKLEAFLGR---KG 144 (212)
T ss_dssp HGGGTGGGCSEEEEEEECCCSSSSBCCCEEEEEEEGGGT------EEEEECSSTTTTHH-HHHHHHHHHHHHHSC---TT
T ss_pred hcccccccCCEEEEEEecCCCCCCCCCCeEEEEEEecCC------eEEEEeCCCCCCHH-HHHHHHHHHHHHhCC---cc
Confidence 999999999999999995 79999999999987 99999999987642 333344444432211 10
Q ss_pred CCCCCccchhhhccCCCccccCCCCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHHHHH
Q 014989 308 SPSDLPIAERIWQHLPRRIDDRIIPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIR 387 (415)
Q Consensus 308 ~~~d~~~~~~~w~~lp~~i~~~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~~I~ 387 (415)
..|. ....++|||.||+|||||||+||++++.+.... .... ...||++++|..+|++|+
T Consensus 145 ---------~~~~-------~~~~~~PqQ~N~~DCGvfvl~~~~~l~~~~~~~---~~~~--~~~~~~~~~i~~~R~~i~ 203 (212)
T 2bkr_A 145 ---------DKLA-------FVEEKAPAQQNSYDCGMYVICNTEALCQNFFRQ---QTES--LLQLLTPAYITKKRGEWK 203 (212)
T ss_dssp ---------CCCC-------EEECCCCCCSSSSTHHHHHHHHHHHHHHHHHSC---CCCC--HHHHCCHHHHHHHHHHHH
T ss_pred ---------ccce-------EeECCCCCCCCCCcHHHHHHHHHHHHHHHhhhc---Cccc--ccccCCHHHHHHHHHHHH
Confidence 0121 235689999999999999999999999984211 1111 246799999999999999
Q ss_pred HHHHHHhh
Q 014989 388 NLLKKQFQ 395 (415)
Q Consensus 388 ~lIl~l~~ 395 (415)
++|++|.+
T Consensus 204 ~lI~~L~~ 211 (212)
T 2bkr_A 204 DLIATLAK 211 (212)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhc
Confidence 99999964
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=100.00 E-value=9.1e-35 Score=267.47 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=126.0
Q ss_pred CCCccCHHHHHHHHHHHHHhcCCCCcCCCceEEEchhhHHHHHhhhhcCCCCchhHHHHHHHhhhcccCCCCcEEEEEEE
Q 014989 172 PAAYLTSPIMNFYIRYLQLQASPTNRAIRDCHFFNTYFYSKLKEAVSHKGGDKDSFFIKFRRWWKGVNIFQKSYVLIPIH 251 (415)
Q Consensus 172 ~~~wLND~IInfyl~~L~~~~~~~~~~~~~~~ifnTfF~~~L~~~~~~kg~d~~~~~~~vkrwtk~~~if~kd~I~IPIn 251 (415)
+++||||+|||||++||.++..... ...++++|+++++..+.. +. ...+..+.+|++..++ +++||||||
T Consensus 1 ~~~WLND~iI~fy~~~L~~~~~~~~-~~~~v~f~~p~~~~~l~~-----~~--~~~~~~~~~~~~~~~~--~~~i~iPin 70 (186)
T 2oix_A 1 ATSWLLDGHLRAYTDDLARRLRGEP-NAHLLHFADSQVVTMLSS-----AD--PDQQARAQRLLAGDDI--PPIVFLPIN 70 (186)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTTTST-TGGGEEECCHHHHHHTTC-----SS--HHHHHHHHHHHHSTTS--CSEEEEEEE
T ss_pred CCCCcChHHHHHHHHHHHHHhhhcc-CcceEEEECHHHHHHHHh-----CC--HHHHHHHHHHcccccc--cCEEEEEEe
Confidence 4789999999999999999875432 124599999766544432 11 1346788888887665 999999999
Q ss_pred c-CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhccCCCCCCccchhhhccCCCccccCC
Q 014989 252 E-DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQEVSPSDLPIAERIWQHLPRRIDDRI 330 (415)
Q Consensus 252 ~-~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~~~~~d~~~~~~~w~~lp~~i~~~~ 330 (415)
. +.||+|+||+.+.+. -|+|+|||||++.+.. ...+...|... +.. + +. ....
T Consensus 71 ~~~~HWsLlvi~~~~~~---~~~~~~~DSl~~~~~~--~~~l~~~l~~~---l~~-----~-------~~------~~~~ 124 (186)
T 2oix_A 71 QPNAHWSLLVVDRRNKD---AVAAYHYDSMAQKDPQ--QRYLADMAAYH---LGL-----D-------YQ------QTHE 124 (186)
T ss_dssp ETTTEEEEEEEECSSTT---SCEEEEECCCSSCCHH--HHHHHHHHHHH---TTC-----C-------GG------GCEE
T ss_pred CCCCccEEEEEECCCCe---eeeeEEEcCCCCCCHH--HHHHHHHHHHH---hCC-----C-------cc------cccc
Confidence 8 899999999999871 1234999999985532 22232333221 110 0 00 1234
Q ss_pred CCcCCCCCCCChHHHHHHHHHHHHhhCCccccchhhhhhcccCcCHHHHHHHHHHHHHHHHHH
Q 014989 331 IPVPQQKNDYDCGLFVLFFMERFMEEAPERLKKKDLAMFGKRWFRPEEASGLRIKIRNLLKKQ 393 (415)
Q Consensus 331 ~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~~~f~~~~i~~~R~~I~~lIl~l 393 (415)
.++|||.||+|||||||+||++++++... .+ . ....|+++++|+.+|++|+++|.++
T Consensus 125 ~~~PqQ~Ng~DCGvfv~~~~~~l~~~~~~----~~-~-~~~~~~~~~~i~~~R~~i~~lI~~~ 181 (186)
T 2oix_A 125 MPIAIQSDGYSAGDHVLTGIEVLAHRVLD----GT-F-DYAGGRDLTDIEPDRGLIRDRLAQA 181 (186)
T ss_dssp ECBCCCC--CCHHHHHHHHHHHHHHHHHH----TC-T-TSTTTTCBTTCCCCHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhh----cC-c-cCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 67999999999999999999999976210 00 0 2346788999999999999999977
No 7
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=94.84 E-value=0.66 Score=41.74 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=54.0
Q ss_pred CCceEEEEEEcCCCCCCCCCeEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhcc-CC--CCCCccchhhhccCCCccc-c
Q 014989 253 DVHWSLVIICIPDKEDESGPIILHLDSLKLHCSLSIFSNIRSFLKEEWNYLKQE-VS--PSDLPIAERIWQHLPRRID-D 328 (415)
Q Consensus 253 ~~HW~L~VI~~~~~~~~~~~~I~~yDSL~~~~~~~i~~~I~~~L~~e~~~~~~~-~~--~~d~~~~~~~w~~lp~~i~-~ 328 (415)
+.||..+..+.... +++.||.+|-++.+ |.++-.-++..+.+. +. ..| +.|+ +
T Consensus 52 GvHWiA~Aw~P~s~------~~YmFDPfG~sd~~-----L~qiY~F~Y~~llkRSAL~sspd------------RCv~Lv 108 (204)
T 4ekf_A 52 GVHWMAFAWNPRSK------TCYLFEPFGFSDQR-----LKQVYQFEYESLLRRSAIASSPD------------RCITLE 108 (204)
T ss_dssp CCCEEEEEEETTTT------EEEEECTBTTCSHH-----HHHHHHHHHHHHHHHHCC--------------------EEE
T ss_pred ceeEEEeEecCCcc------eEEEeCCCCCCHHH-----HHHHhhhhHHHHHHHHhhcCCCC------------ceeEEE
Confidence 59999999998877 99999999988742 223333333332111 10 111 1222 2
Q ss_pred CCCCcCCCCCCCChHHHHHHHHHHHHhhCCccc
Q 014989 329 RIIPVPQQKNDYDCGLFVLFFMERFMEEAPERL 361 (415)
Q Consensus 329 ~~~~vPqQ~Ng~DCGvFVl~~ae~~~~~~p~~f 361 (415)
...+.-|=.++--||+|.|.|+.+|...+...+
T Consensus 109 kstqsVQcp~SaACGLFC~lFL~aF~~~p~~pm 141 (204)
T 4ekf_A 109 KSTQSVQGPNSAAAGLFCCMFLHAFANWPQTPM 141 (204)
T ss_dssp ECCSBCSCTTCCCHHHHHHHHHHHHHHCTTSCS
T ss_pred eccccccCcCchhHHHHHHHHHHHHHhCCCCCC
Confidence 233455667888999999999999998743333
No 8
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=16.49 E-value=1.9e+02 Score=25.31 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHHhhCCccccchhhhhhcc----cCcCHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCC
Q 014989 340 YDCGLFVLFFMERFMEEAPERLKKKDLAMFGK----RWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCS 414 (415)
Q Consensus 340 ~DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~----~~f~~~~i~~~R~~I~~lIl~l~~~~~~~~~~~~~~~~~~~~~ 414 (415)
-|++.|+=+...+++.|.+..+...-+..++. .=++.......=+.|+..+.+++..... .-+-.+.+|+|+
T Consensus 84 RD~~~~LRyitYa~laGd~~~L~e~~L~glrEiy~algvp~~~~~~a~~~mk~~~~~~l~~~~~---~~~~~~~~~~~~ 159 (177)
T 1xg0_C 84 RDGEIILRYVSYALLSGDASVLEDRCLNGLKETYSSLGVPANSNARAVSIMKACAVAFVNNTAS---QKKLSTPQGDCS 159 (177)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTCSS---SCCSCCCCCCCH
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHhHHHHHHHhCCChHHHHHHHHHHHHHHHHHhcchhh---hhhccCCccchH
Confidence 39999988888888888775554332322221 1133333222335566666666654322 223345889996
No 9
>2vml_B Phycocyanin beta chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_B*
Probab=10.90 E-value=2.5e+02 Score=24.34 Aligned_cols=66 Identities=11% Similarity=0.093 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHhhCCccccchhhhhhcc----cCcCHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCCCC
Q 014989 341 DCGLFVLFFMERFMEEAPERLKKKDLAMFGK----RWFRPEEASGLRIKIRNLLKKQFQISSAECCNSKSLTSPGGCS 414 (415)
Q Consensus 341 DCGvFVl~~ae~~~~~~p~~f~q~dm~~fr~----~~f~~~~i~~~R~~I~~lIl~l~~~~~~~~~~~~~~~~~~~~~ 414 (415)
|++.|+=+...+++.|.+..+...-+..++. .=.+.......=+.|+....+++.... ...+|+|+
T Consensus 85 D~~~~LR~itYa~lagd~~~L~~~~L~gLrE~y~algvp~~~~~~a~~~mk~~~~~~~~~~~--------~~~~~~~~ 154 (172)
T 2vml_B 85 DMEIILRYVSYALLAGDASVLEDRCLNGLKETYVALGTPTRSVARAVQLMKETAIGYVNSPS--------GVTRGDCS 154 (172)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHSCS--------SCCCCCCH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcccc--------ccccchHH
Confidence 8999988888888888775554333322221 113333323344455555555554422 14688885
No 10
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=9.96 E-value=1.6e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=29.3
Q ss_pred CChHHH-HHHHHHHHHhhC-----CccccchhhhhhcccCcCHHHHHHHHHHH
Q 014989 340 YDCGLF-VLFFMERFMEEA-----PERLKKKDLAMFGKRWFRPEEASGLRIKI 386 (415)
Q Consensus 340 ~DCGvF-Vl~~ae~~~~~~-----p~~f~q~dm~~fr~~~f~~~~i~~~R~~I 386 (415)
.|==+. |+.|+..+..+. ...++.+++...|..-..+.++...|..+
T Consensus 76 sd~ei~~l~~Yl~~~~~~~~~~~~~~~~t~~~v~~~r~~~~~~~~~~~~r~~~ 128 (131)
T 1c52_A 76 KDEEIAAVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKL 128 (131)
T ss_dssp CHHHHHHHHHHHHHTTSTGGGSTTCCCCCHHHHHHHTTSCCCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHhccCCHHHHHHHHHhh
Confidence 344344 345666554332 24567777877777777788888887754
Done!