Query 014990
Match_columns 415
No_of_seqs 135 out of 2394
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:02:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02852 ferredoxin-NADP+ redu 100.0 1.8E-50 3.8E-55 405.3 37.6 408 4-413 6-419 (491)
2 KOG1800 Ferredoxin/adrenodoxin 100.0 2.5E-47 5.3E-52 354.5 27.6 381 18-413 19-404 (468)
3 PTZ00188 adrenodoxin reductase 100.0 1.7E-42 3.7E-47 341.9 33.6 379 10-413 30-437 (506)
4 PRK12779 putative bifunctional 100.0 1.4E-39 3E-44 350.4 31.5 317 16-414 303-625 (944)
5 PRK12831 putative oxidoreducta 100.0 2.7E-39 5.9E-44 326.9 30.4 317 15-414 136-459 (464)
6 TIGR01316 gltA glutamate synth 100.0 9.7E-39 2.1E-43 322.3 30.5 316 16-415 130-449 (449)
7 PRK12775 putative trifunctiona 100.0 5.1E-38 1.1E-42 341.1 30.9 317 17-414 428-753 (1006)
8 PRK12778 putative bifunctional 100.0 7.7E-38 1.7E-42 334.2 31.0 316 16-414 428-748 (752)
9 PRK11749 dihydropyrimidine deh 100.0 1.2E-36 2.6E-41 308.3 31.3 313 16-414 137-450 (457)
10 PRK12769 putative oxidoreducta 100.0 1.2E-36 2.7E-41 320.3 31.8 318 17-414 325-650 (654)
11 PRK12814 putative NADPH-depend 100.0 2.8E-36 6.1E-41 316.4 29.6 307 17-414 191-499 (652)
12 PRK12809 putative oxidoreducta 100.0 6.3E-36 1.4E-40 313.6 30.9 317 17-414 308-633 (639)
13 PRK09853 putative selenate red 100.0 5.4E-36 1.2E-40 318.1 30.5 302 17-413 537-839 (1019)
14 TIGR01318 gltD_gamma_fam gluta 100.0 1.3E-35 2.7E-40 300.7 31.4 317 17-414 139-464 (467)
15 PRK12810 gltD glutamate syntha 100.0 2.9E-35 6.2E-40 298.9 29.0 322 17-414 141-463 (471)
16 TIGR03315 Se_ygfK putative sel 100.0 9.7E-35 2.1E-39 310.1 30.3 301 17-413 535-837 (1012)
17 TIGR01317 GOGAT_sm_gam glutama 100.0 1.1E-34 2.4E-39 294.9 28.8 330 18-414 142-477 (485)
18 PRK12770 putative glutamate sy 100.0 2.8E-34 6.1E-39 281.6 29.7 324 4-414 5-348 (352)
19 KOG0399 Glutamate synthase [Am 100.0 3.2E-35 6.9E-40 300.4 15.1 330 16-413 1782-2117(2142)
20 PRK13984 putative oxidoreducta 100.0 2.6E-33 5.6E-38 293.2 28.8 320 16-414 280-600 (604)
21 PRK12771 putative glutamate sy 100.0 9.7E-33 2.1E-37 286.4 30.0 307 16-414 134-442 (564)
22 COG1252 Ndh NADH dehydrogenase 100.0 6.8E-33 1.5E-37 269.2 23.5 306 18-414 2-330 (405)
23 TIGR01292 TRX_reduct thioredox 100.0 2.6E-32 5.6E-37 261.4 27.4 281 20-415 1-300 (300)
24 PRK06370 mercuric reductase; V 100.0 4.7E-32 1E-36 275.4 30.5 289 17-413 3-333 (463)
25 TIGR01421 gluta_reduc_1 glutat 100.0 1.3E-31 2.9E-36 270.6 29.3 282 19-412 2-326 (450)
26 COG0493 GltD NADPH-dependent g 100.0 4.3E-33 9.4E-38 277.2 17.8 323 16-412 120-447 (457)
27 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.8E-31 3.8E-36 265.4 27.8 287 18-413 3-334 (454)
28 TIGR02053 MerA mercuric reduct 100.0 2.1E-31 4.6E-36 270.7 28.1 286 20-413 1-328 (463)
29 PRK10262 thioredoxin reductase 100.0 2.3E-31 5E-36 257.9 26.7 289 17-414 4-313 (321)
30 COG0492 TrxB Thioredoxin reduc 100.0 2.5E-31 5.5E-36 252.4 26.2 280 18-413 2-298 (305)
31 PRK06467 dihydrolipoamide dehy 100.0 8.5E-31 1.9E-35 266.2 28.8 287 18-413 3-336 (471)
32 PRK06116 glutathione reductase 100.0 8.3E-31 1.8E-35 265.4 27.9 283 18-413 3-327 (450)
33 TIGR03140 AhpF alkyl hydropero 100.0 4.9E-31 1.1E-35 270.6 26.4 284 17-414 210-511 (515)
34 PRK09564 coenzyme A disulfide 100.0 3.7E-31 8E-36 267.7 25.0 290 20-413 1-316 (444)
35 TIGR01424 gluta_reduc_2 glutat 100.0 1.2E-30 2.7E-35 263.6 28.5 281 19-413 2-325 (446)
36 PRK05249 soluble pyridine nucl 100.0 2.6E-30 5.7E-35 262.6 29.3 286 17-413 3-334 (461)
37 PRK15317 alkyl hydroperoxide r 100.0 1.9E-30 4E-35 266.7 27.5 283 17-413 209-509 (517)
38 PRK06416 dihydrolipoamide dehy 100.0 6.1E-30 1.3E-34 260.0 29.6 284 18-413 3-333 (462)
39 TIGR03143 AhpF_homolog putativ 100.0 2.9E-30 6.4E-35 266.9 27.2 282 18-414 3-307 (555)
40 PRK04965 NADH:flavorubredoxin 100.0 3.2E-30 6.9E-35 255.3 25.6 285 20-413 3-301 (377)
41 PRK08010 pyridine nucleotide-d 100.0 6.8E-30 1.5E-34 258.1 27.9 284 18-413 2-316 (441)
42 PLN02507 glutathione reductase 100.0 6.4E-30 1.4E-34 260.9 27.7 286 14-412 20-361 (499)
43 PRK07251 pyridine nucleotide-d 100.0 1.4E-29 3E-34 255.6 29.5 283 18-412 2-314 (438)
44 PRK14989 nitrite reductase sub 100.0 4.7E-30 1E-34 274.4 25.5 291 19-413 3-309 (847)
45 PLN02546 glutathione reductase 100.0 1.2E-29 2.6E-34 260.5 26.8 284 18-413 78-412 (558)
46 PTZ00318 NADH dehydrogenase-li 100.0 6.2E-30 1.3E-34 256.8 24.0 303 17-413 8-345 (424)
47 PTZ00058 glutathione reductase 100.0 3.9E-29 8.4E-34 256.6 30.2 283 18-413 47-431 (561)
48 PRK13512 coenzyme A disulfide 100.0 5.9E-30 1.3E-34 258.0 23.7 282 19-413 1-311 (438)
49 PRK07846 mycothione reductase; 100.0 2.8E-29 6.1E-34 253.6 28.2 281 19-413 1-324 (451)
50 PRK07818 dihydrolipoamide dehy 100.0 2.3E-29 5E-34 255.8 26.9 286 19-413 4-335 (466)
51 TIGR01423 trypano_reduc trypan 100.0 3.7E-29 8.1E-34 254.0 27.7 287 18-413 2-350 (486)
52 PRK06115 dihydrolipoamide dehy 100.0 7.8E-29 1.7E-33 251.6 29.6 287 18-413 2-337 (466)
53 PRK06912 acoL dihydrolipoamide 100.0 6.3E-29 1.4E-33 252.0 28.7 283 20-413 1-329 (458)
54 PRK06292 dihydrolipoamide dehy 100.0 7.7E-29 1.7E-33 251.8 29.2 284 18-413 2-330 (460)
55 PRK07845 flavoprotein disulfid 100.0 7.2E-29 1.6E-33 251.9 28.7 284 19-413 1-336 (466)
56 PRK13748 putative mercuric red 100.0 8.6E-29 1.9E-33 257.5 29.1 282 18-413 97-427 (561)
57 TIGR02374 nitri_red_nirB nitri 100.0 1.9E-29 4.2E-34 269.7 24.1 285 22-413 1-300 (785)
58 PRK09754 phenylpropionate diox 100.0 2.9E-29 6.3E-34 250.0 23.7 286 18-413 2-308 (396)
59 PRK05976 dihydrolipoamide dehy 100.0 2.2E-28 4.8E-33 249.0 29.4 287 18-413 3-342 (472)
60 PRK14694 putative mercuric red 100.0 2.4E-28 5.2E-33 248.4 29.1 282 17-413 4-334 (468)
61 TIGR01350 lipoamide_DH dihydro 100.0 2E-28 4.4E-33 248.8 28.0 285 19-413 1-331 (461)
62 TIGR03169 Nterm_to_SelD pyridi 100.0 2.9E-29 6.3E-34 247.4 21.0 288 21-413 1-308 (364)
63 TIGR01438 TGR thioredoxin and 100.0 3.2E-28 6.9E-33 247.6 28.7 286 19-413 2-343 (484)
64 PRK06327 dihydrolipoamide dehy 100.0 3.2E-28 7E-33 247.8 28.7 289 18-413 3-346 (475)
65 PRK14727 putative mercuric red 100.0 6.5E-28 1.4E-32 245.7 28.3 284 17-413 14-345 (479)
66 PRK06567 putative bifunctional 100.0 9.4E-28 2E-32 252.3 26.8 316 16-413 380-767 (1028)
67 PTZ00052 thioredoxin reductase 100.0 3E-27 6.5E-32 241.5 29.1 282 19-413 5-340 (499)
68 TIGR03452 mycothione_red mycot 100.0 4.7E-27 1E-31 237.6 28.0 281 18-413 1-327 (452)
69 PTZ00153 lipoamide dehydrogena 100.0 2.3E-26 4.9E-31 239.2 30.2 300 19-413 116-494 (659)
70 TIGR01372 soxA sarcosine oxida 100.0 2.8E-26 6.2E-31 250.7 27.5 278 18-413 162-469 (985)
71 COG3634 AhpF Alkyl hydroperoxi 99.9 3.7E-26 8E-31 210.9 17.7 281 17-412 209-511 (520)
72 KOG1336 Monodehydroascorbate/f 99.9 2.2E-25 4.7E-30 215.3 20.4 289 18-411 73-380 (478)
73 PLN02172 flavin-containing mon 99.9 1.5E-24 3.3E-29 218.5 25.2 273 16-412 7-349 (461)
74 KOG0405 Pyridine nucleotide-di 99.9 2.7E-24 6E-29 198.6 22.3 285 17-413 18-349 (478)
75 KOG2495 NADH-dehydrogenase (ub 99.9 5.5E-25 1.2E-29 208.8 17.4 313 17-414 53-395 (491)
76 KOG0404 Thioredoxin reductase 99.9 4.4E-24 9.6E-29 186.2 20.3 288 19-410 8-313 (322)
77 TIGR03385 CoA_CoA_reduc CoA-di 99.9 3.8E-24 8.3E-29 215.4 22.4 274 33-413 1-303 (427)
78 COG1251 NirB NAD(P)H-nitrite r 99.9 9.2E-24 2E-28 212.8 20.7 291 18-413 2-305 (793)
79 KOG1335 Dihydrolipoamide dehyd 99.9 7.5E-23 1.6E-27 191.4 22.1 288 18-412 38-375 (506)
80 PF00743 FMO-like: Flavin-bind 99.9 9.5E-23 2.1E-27 208.2 22.4 162 19-215 1-218 (531)
81 KOG4716 Thioredoxin reductase 99.9 4.7E-23 1E-27 189.8 17.6 294 14-413 14-364 (503)
82 PF13738 Pyr_redox_3: Pyridine 99.8 3.7E-19 8E-24 160.7 14.5 156 23-214 1-201 (203)
83 COG2072 TrkA Predicted flavopr 99.8 1E-17 2.2E-22 168.4 24.2 165 16-215 5-210 (443)
84 COG0446 HcaD Uncharacterized N 99.8 2.8E-17 6.1E-22 164.2 21.8 286 22-412 1-308 (415)
85 KOG1399 Flavin-containing mono 99.8 1.4E-17 3.1E-22 165.4 18.4 150 17-180 4-207 (448)
86 PF13434 K_oxygenase: L-lysine 99.7 6.2E-17 1.4E-21 157.2 17.5 166 19-215 2-227 (341)
87 COG3486 IucD Lysine/ornithine 99.7 1.1E-14 2.4E-19 138.8 20.9 305 16-390 2-386 (436)
88 KOG2755 Oxidoreductase [Genera 99.6 3.7E-15 8E-20 133.5 8.3 164 22-227 2-179 (334)
89 COG1148 HdrA Heterodisulfide r 99.6 1.5E-13 3.2E-18 133.0 19.6 82 327-411 457-540 (622)
90 KOG3851 Sulfide:quinone oxidor 99.6 6.4E-15 1.4E-19 135.5 9.3 296 16-411 36-356 (446)
91 PF07992 Pyr_redox_2: Pyridine 99.5 3.5E-15 7.6E-20 134.3 5.2 103 21-128 1-130 (201)
92 KOG1346 Programmed cell death 99.4 1.6E-12 3.4E-17 123.6 13.2 292 17-412 176-517 (659)
93 COG4529 Uncharacterized protei 99.3 9.2E-10 2E-14 108.2 23.5 45 19-63 1-46 (474)
94 PRK05329 anaerobic glycerol-3- 99.3 7.8E-11 1.7E-15 117.3 14.8 34 19-54 2-35 (422)
95 PRK09897 hypothetical protein; 99.1 4.9E-09 1.1E-13 107.4 17.4 39 19-57 1-39 (534)
96 COG2081 Predicted flavoprotein 98.9 1.6E-08 3.6E-13 97.2 11.7 98 18-117 2-165 (408)
97 TIGR03378 glycerol3P_GlpB glyc 98.8 1.5E-06 3.3E-11 86.0 23.9 33 20-54 1-33 (419)
98 PF03486 HI0933_like: HI0933-l 98.8 2.7E-08 5.9E-13 99.0 9.8 96 20-117 1-164 (409)
99 PRK04176 ribulose-1,5-biphosph 98.7 9.2E-08 2E-12 89.5 10.2 39 18-58 24-62 (257)
100 TIGR00292 thiazole biosynthesi 98.6 3.9E-07 8.4E-12 85.1 10.4 53 4-58 5-58 (254)
101 COG0644 FixC Dehydrogenases (f 98.5 5.6E-07 1.2E-11 89.8 11.6 99 18-118 2-151 (396)
102 TIGR02032 GG-red-SF geranylger 98.5 5.1E-07 1.1E-11 85.8 9.7 97 20-118 1-147 (295)
103 PLN02463 lycopene beta cyclase 98.4 1.9E-06 4E-11 87.1 11.9 100 17-118 26-168 (447)
104 PF13450 NAD_binding_8: NAD(P) 98.4 3.7E-07 7.9E-12 67.1 4.9 37 24-62 1-37 (68)
105 PF00070 Pyr_redox: Pyridine n 98.4 1.4E-06 3E-11 66.2 8.3 79 161-311 1-79 (80)
106 PRK12842 putative succinate de 98.4 1.5E-06 3.3E-11 90.9 10.0 42 18-61 8-49 (574)
107 COG1635 THI4 Ribulose 1,5-bisp 98.3 5.1E-07 1.1E-11 80.0 4.8 44 18-63 29-72 (262)
108 PRK06847 hypothetical protein; 98.3 4.7E-06 1E-10 82.5 12.3 36 18-55 3-38 (375)
109 PRK10157 putative oxidoreducta 98.3 3.7E-06 7.9E-11 84.9 11.6 38 18-57 4-41 (428)
110 PLN02661 Putative thiazole syn 98.3 4.1E-06 8.9E-11 80.9 11.3 39 18-58 91-130 (357)
111 PRK10015 oxidoreductase; Provi 98.3 4.1E-06 8.9E-11 84.5 11.8 37 18-56 4-40 (429)
112 PF00070 Pyr_redox: Pyridine n 98.3 1E-05 2.2E-10 61.4 10.3 65 21-97 1-65 (80)
113 TIGR01790 carotene-cycl lycope 98.3 4.6E-06 9.9E-11 83.0 10.7 36 21-58 1-36 (388)
114 PF01946 Thi4: Thi4 family; PD 98.3 8.4E-07 1.8E-11 79.0 4.5 44 18-63 16-59 (230)
115 PRK06834 hypothetical protein; 98.2 1.2E-05 2.7E-10 82.3 12.4 36 18-55 2-37 (488)
116 PRK07333 2-octaprenyl-6-methox 98.2 8.7E-06 1.9E-10 81.3 10.8 36 19-54 1-36 (403)
117 PRK06184 hypothetical protein; 98.2 1.2E-05 2.5E-10 83.0 11.6 36 18-55 2-37 (502)
118 TIGR02023 BchP-ChlP geranylger 98.2 1.5E-05 3.3E-10 79.3 12.0 32 20-53 1-32 (388)
119 PRK06134 putative FAD-binding 98.2 6.6E-06 1.4E-10 86.2 9.7 42 17-60 10-51 (581)
120 TIGR02028 ChlP geranylgeranyl 98.2 1.1E-05 2.4E-10 80.6 10.8 34 20-55 1-34 (398)
121 TIGR00275 flavoprotein, HI0933 98.2 1.2E-05 2.5E-10 80.5 10.6 34 23-58 1-34 (400)
122 PRK07843 3-ketosteroid-delta-1 98.2 1E-05 2.2E-10 84.3 10.3 40 18-59 6-45 (557)
123 COG1232 HemY Protoporphyrinoge 98.1 3.6E-06 7.7E-11 84.0 5.4 42 20-61 1-42 (444)
124 COG1249 Lpd Pyruvate/2-oxoglut 98.1 3.2E-05 6.9E-10 77.9 11.9 93 17-122 171-274 (454)
125 PRK07190 hypothetical protein; 98.1 2.6E-05 5.7E-10 79.9 11.5 37 17-55 3-39 (487)
126 PRK07251 pyridine nucleotide-d 98.1 3.4E-05 7.3E-10 78.2 11.9 92 18-122 156-255 (438)
127 PLN02697 lycopene epsilon cycl 98.1 3.3E-05 7.2E-10 79.5 11.6 34 18-53 107-140 (529)
128 PRK08244 hypothetical protein; 98.1 2.5E-05 5.4E-10 80.4 10.7 34 20-55 3-36 (493)
129 PRK11883 protoporphyrinogen ox 98.0 6.2E-06 1.3E-10 83.6 5.6 42 20-61 1-42 (451)
130 PRK05192 tRNA uridine 5-carbox 98.0 3E-05 6.5E-10 80.2 10.5 34 18-53 3-36 (618)
131 PRK08255 salicylyl-CoA 5-hydro 98.0 2.3E-05 4.9E-10 84.8 10.0 36 20-55 1-36 (765)
132 COG1252 Ndh NADH dehydrogenase 98.0 3.7E-05 8.1E-10 75.8 10.4 91 18-118 154-261 (405)
133 TIGR01350 lipoamide_DH dihydro 98.0 5.4E-05 1.2E-09 77.2 11.6 92 18-122 169-271 (461)
134 KOG0029 Amine oxidase [Seconda 98.0 8.3E-06 1.8E-10 83.1 5.6 45 15-61 11-55 (501)
135 PRK04965 NADH:flavorubredoxin 98.0 6.1E-05 1.3E-09 74.7 11.4 89 18-117 140-237 (377)
136 COG1233 Phytoene dehydrogenase 98.0 8.7E-06 1.9E-10 83.4 5.5 42 18-61 2-43 (487)
137 PRK09754 phenylpropionate diox 97.9 5.2E-05 1.1E-09 75.7 10.6 89 18-117 143-239 (396)
138 PRK05976 dihydrolipoamide dehy 97.9 7.1E-05 1.5E-09 76.5 11.6 91 19-122 180-283 (472)
139 PRK06912 acoL dihydrolipoamide 97.9 9.3E-05 2E-09 75.4 11.8 92 18-122 169-270 (458)
140 PRK13512 coenzyme A disulfide 97.9 7.2E-05 1.6E-09 75.8 10.7 87 19-117 148-239 (438)
141 PRK04176 ribulose-1,5-biphosph 97.9 0.00035 7.5E-09 65.5 14.5 202 159-413 25-252 (257)
142 PRK07208 hypothetical protein; 97.9 1.5E-05 3.3E-10 81.6 5.7 42 18-61 3-44 (479)
143 PF01134 GIDA: Glucose inhibit 97.9 6.6E-05 1.4E-09 73.7 9.6 28 21-50 1-28 (392)
144 PRK06416 dihydrolipoamide dehy 97.9 0.00011 2.3E-09 75.1 11.4 92 18-122 171-274 (462)
145 COG3349 Uncharacterized conser 97.9 1.6E-05 3.4E-10 79.4 4.9 42 20-63 1-42 (485)
146 PF13454 NAD_binding_9: FAD-NA 97.9 0.00014 3E-09 62.8 10.3 33 23-55 1-36 (156)
147 TIGR03385 CoA_CoA_reduc CoA-di 97.9 0.00012 2.5E-09 74.0 11.3 89 18-117 136-231 (427)
148 TIGR02053 MerA mercuric reduct 97.9 0.00013 2.8E-09 74.5 11.6 91 19-122 166-268 (463)
149 PRK07364 2-octaprenyl-6-methox 97.8 2E-05 4.3E-10 79.1 5.6 39 16-56 15-53 (415)
150 KOG1276 Protoporphyrinogen oxi 97.8 2.2E-05 4.8E-10 76.1 5.5 45 18-62 10-54 (491)
151 PF01494 FAD_binding_3: FAD bi 97.8 1.7E-05 3.7E-10 77.2 4.9 34 20-55 2-35 (356)
152 PRK09564 coenzyme A disulfide 97.8 0.00014 2.9E-09 73.8 11.4 89 18-117 148-244 (444)
153 PF12831 FAD_oxidored: FAD dep 97.8 2.2E-05 4.8E-10 79.2 5.6 41 21-63 1-41 (428)
154 PRK07233 hypothetical protein; 97.8 2E-05 4.4E-10 79.4 5.2 39 21-61 1-39 (434)
155 PRK13977 myosin-cross-reactive 97.8 3.2E-05 7E-10 79.3 6.6 47 15-61 18-66 (576)
156 TIGR00562 proto_IX_ox protopor 97.8 2.1E-05 4.5E-10 80.1 5.3 43 19-61 2-46 (462)
157 PLN02268 probable polyamine ox 97.8 2.3E-05 4.9E-10 79.3 5.4 40 20-61 1-40 (435)
158 PLN02576 protoporphyrinogen ox 97.8 2.4E-05 5.1E-10 80.6 5.6 43 17-61 10-53 (496)
159 PRK06327 dihydrolipoamide dehy 97.8 0.00018 3.8E-09 73.7 11.9 92 18-122 182-286 (475)
160 TIGR01424 gluta_reduc_2 glutat 97.8 0.00017 3.6E-09 73.3 11.4 88 18-117 165-261 (446)
161 KOG2415 Electron transfer flav 97.8 1.9E-05 4E-10 76.3 4.2 47 18-64 75-125 (621)
162 PRK06370 mercuric reductase; V 97.8 0.00017 3.7E-09 73.6 11.5 92 18-122 170-273 (463)
163 COG0446 HcaD Uncharacterized N 97.8 0.00011 2.3E-09 73.3 9.9 89 19-118 136-236 (415)
164 PRK14694 putative mercuric red 97.8 0.00018 3.9E-09 73.5 11.7 90 19-122 178-275 (468)
165 PLN00093 geranylgeranyl diphos 97.8 3.1E-05 6.8E-10 78.5 5.6 37 16-54 36-72 (450)
166 TIGR02733 desat_CrtD C-3',4' d 97.8 3.1E-05 6.8E-10 79.6 5.6 40 20-61 2-41 (492)
167 PRK05249 soluble pyridine nucl 97.8 0.00018 4E-09 73.3 11.2 92 18-122 174-274 (461)
168 PRK07045 putative monooxygenas 97.8 3.2E-05 6.8E-10 77.0 5.3 38 17-56 3-40 (388)
169 PRK08010 pyridine nucleotide-d 97.8 0.00024 5.3E-09 72.0 11.8 92 18-122 157-256 (441)
170 TIGR01421 gluta_reduc_1 glutat 97.8 0.00021 4.6E-09 72.6 11.3 92 18-122 165-267 (450)
171 PF05834 Lycopene_cycl: Lycope 97.7 0.0002 4.3E-09 71.0 10.6 36 21-56 1-36 (374)
172 PRK06116 glutathione reductase 97.7 0.00025 5.4E-09 72.1 11.5 92 18-122 166-267 (450)
173 PRK08013 oxidoreductase; Provi 97.7 3.9E-05 8.4E-10 76.7 5.4 37 18-56 2-38 (400)
174 COG3380 Predicted NAD/FAD-depe 97.7 4.6E-05 9.9E-10 69.8 5.2 39 20-60 2-40 (331)
175 PRK07818 dihydrolipoamide dehy 97.7 0.00026 5.7E-09 72.2 11.5 92 18-122 171-275 (466)
176 PRK12416 protoporphyrinogen ox 97.7 4.1E-05 8.9E-10 78.1 5.6 42 20-61 2-47 (463)
177 PRK08849 2-octaprenyl-3-methyl 97.7 3.9E-05 8.4E-10 76.3 5.2 34 19-54 3-36 (384)
178 PRK06753 hypothetical protein; 97.7 3.7E-05 8.1E-10 76.0 5.0 35 20-56 1-35 (373)
179 PRK07494 2-octaprenyl-6-methox 97.7 4.5E-05 9.8E-10 75.8 5.5 38 17-56 5-42 (388)
180 TIGR02734 crtI_fam phytoene de 97.7 3.8E-05 8.3E-10 79.2 4.8 38 22-61 1-38 (502)
181 PRK06115 dihydrolipoamide dehy 97.7 0.00037 7.9E-09 71.2 11.8 88 18-117 173-274 (466)
182 PRK07236 hypothetical protein; 97.7 4.9E-05 1.1E-09 75.6 5.3 37 17-55 4-40 (386)
183 PRK14727 putative mercuric red 97.7 0.00034 7.4E-09 71.7 11.5 91 18-122 187-285 (479)
184 PRK13748 putative mercuric red 97.7 0.00032 7E-09 73.4 11.4 91 18-122 269-367 (561)
185 PRK08020 ubiF 2-octaprenyl-3-m 97.7 4.8E-05 1E-09 75.7 5.1 36 17-54 3-38 (391)
186 PRK07608 ubiquinone biosynthes 97.7 5.4E-05 1.2E-09 75.2 5.4 37 18-56 4-40 (388)
187 TIGR02731 phytoene_desat phyto 97.7 5.2E-05 1.1E-09 77.1 5.2 38 21-60 1-38 (453)
188 TIGR00031 UDP-GALP_mutase UDP- 97.7 6.4E-05 1.4E-09 74.1 5.5 40 20-61 2-41 (377)
189 PLN02507 glutathione reductase 97.7 0.00038 8.2E-09 71.7 11.4 91 19-122 203-302 (499)
190 PRK08773 2-octaprenyl-3-methyl 97.6 5.8E-05 1.3E-09 75.2 5.2 37 17-55 4-40 (392)
191 PRK07846 mycothione reductase; 97.6 0.00044 9.6E-09 70.3 11.7 91 18-122 165-264 (451)
192 PRK05732 2-octaprenyl-6-methox 97.6 5.5E-05 1.2E-09 75.3 4.9 34 18-53 2-38 (395)
193 PRK08163 salicylate hydroxylas 97.6 6.8E-05 1.5E-09 74.8 5.5 36 19-56 4-39 (396)
194 TIGR01988 Ubi-OHases Ubiquinon 97.6 5.7E-05 1.2E-09 74.8 4.9 34 21-56 1-34 (385)
195 PRK07845 flavoprotein disulfid 97.6 0.00044 9.6E-09 70.6 11.5 91 19-122 177-276 (466)
196 PRK09126 hypothetical protein; 97.6 6.1E-05 1.3E-09 75.0 5.0 35 19-55 3-37 (392)
197 PTZ00318 NADH dehydrogenase-li 97.6 0.00046 9.9E-09 69.6 11.3 88 20-117 174-278 (424)
198 COG0654 UbiH 2-polyprenyl-6-me 97.6 6.3E-05 1.4E-09 74.9 4.9 33 19-53 2-34 (387)
199 TIGR02360 pbenz_hydroxyl 4-hyd 97.6 6.7E-05 1.5E-09 74.8 5.0 35 19-55 2-36 (390)
200 PRK07538 hypothetical protein; 97.6 7.3E-05 1.6E-09 75.1 5.1 35 20-56 1-35 (413)
201 PRK05714 2-octaprenyl-3-methyl 97.6 6.9E-05 1.5E-09 75.0 4.8 34 19-54 2-35 (405)
202 TIGR02730 carot_isom carotene 97.6 8E-05 1.7E-09 76.6 5.4 40 20-61 1-40 (493)
203 PLN02529 lysine-specific histo 97.6 9.1E-05 2E-09 78.8 5.8 44 16-61 157-200 (738)
204 PRK14989 nitrite reductase sub 97.6 0.00039 8.5E-09 75.7 10.8 93 18-122 144-247 (847)
205 PRK07588 hypothetical protein; 97.6 8E-05 1.7E-09 74.2 5.1 34 20-55 1-34 (391)
206 TIGR02374 nitri_red_nirB nitri 97.6 0.00041 8.8E-09 75.3 10.8 93 18-122 139-240 (785)
207 PRK05868 hypothetical protein; 97.6 8.9E-05 1.9E-09 73.4 5.3 36 19-56 1-36 (372)
208 PRK08850 2-octaprenyl-6-methox 97.6 8.8E-05 1.9E-09 74.3 5.1 34 18-53 3-36 (405)
209 TIGR00136 gidA glucose-inhibit 97.5 0.00074 1.6E-08 70.0 11.6 33 20-54 1-33 (617)
210 PLN02568 polyamine oxidase 97.5 0.00013 2.9E-09 75.5 6.2 45 17-61 3-50 (539)
211 PRK01438 murD UDP-N-acetylmura 97.5 0.00038 8.3E-09 71.4 9.5 79 18-123 15-93 (480)
212 KOG0685 Flavin-containing amin 97.5 0.00013 2.8E-09 72.0 5.6 44 17-61 19-62 (498)
213 PRK06292 dihydrolipoamide dehy 97.5 0.00068 1.5E-08 69.1 11.3 91 18-122 168-270 (460)
214 PRK06185 hypothetical protein; 97.5 9.9E-05 2.1E-09 73.9 5.1 36 18-55 5-40 (407)
215 PRK08243 4-hydroxybenzoate 3-m 97.5 0.0001 2.2E-09 73.5 4.9 35 19-55 2-36 (392)
216 PRK06126 hypothetical protein; 97.5 0.00012 2.6E-09 76.3 5.6 36 17-54 5-40 (545)
217 PLN02676 polyamine oxidase 97.5 0.00013 2.8E-09 74.8 5.6 43 17-61 24-67 (487)
218 TIGR01438 TGR thioredoxin and 97.5 0.00064 1.4E-08 69.7 10.7 91 18-122 179-281 (484)
219 PTZ00058 glutathione reductase 97.5 0.00074 1.6E-08 70.3 11.2 87 19-117 237-334 (561)
220 PRK06617 2-octaprenyl-6-methox 97.5 0.00011 2.4E-09 72.8 4.8 33 20-54 2-34 (374)
221 PRK06475 salicylate hydroxylas 97.5 0.00012 2.7E-09 73.1 5.2 34 20-55 3-36 (400)
222 TIGR01423 trypano_reduc trypan 97.5 0.00083 1.8E-08 68.9 11.2 88 18-117 186-286 (486)
223 PF01266 DAO: FAD dependent ox 97.5 0.00017 3.7E-09 70.2 6.0 35 21-57 1-35 (358)
224 PRK06467 dihydrolipoamide dehy 97.5 0.00083 1.8E-08 68.7 11.2 91 18-122 173-276 (471)
225 PTZ00052 thioredoxin reductase 97.5 0.00086 1.9E-08 69.1 11.2 91 18-122 181-280 (499)
226 PLN02328 lysine-specific histo 97.5 0.00017 3.7E-09 77.2 5.9 43 17-61 236-278 (808)
227 TIGR03452 mycothione_red mycot 97.5 0.00093 2E-08 67.9 11.0 91 18-122 168-267 (452)
228 PLN02487 zeta-carotene desatur 97.4 0.00019 4.1E-09 74.6 5.9 42 18-61 74-115 (569)
229 COG2907 Predicted NAD/FAD-bind 97.4 0.00012 2.6E-09 69.4 3.9 41 18-61 7-47 (447)
230 TIGR01989 COQ6 Ubiquinone bios 97.4 0.00014 3.1E-09 73.6 4.8 32 20-53 1-36 (437)
231 PF00890 FAD_binding_2: FAD bi 97.4 0.00015 3.3E-09 72.8 4.9 37 21-59 1-37 (417)
232 COG1231 Monoamine oxidase [Ami 97.4 0.00021 4.5E-09 70.4 5.7 42 17-60 5-46 (450)
233 PRK12409 D-amino acid dehydrog 97.4 0.00019 4.2E-09 71.9 5.7 35 20-56 2-36 (410)
234 TIGR01373 soxB sarcosine oxida 97.4 0.00021 4.6E-09 71.6 5.9 41 13-55 24-66 (407)
235 PRK08132 FAD-dependent oxidore 97.4 0.00019 4E-09 74.9 5.6 37 17-55 21-57 (547)
236 TIGR03219 salicylate_mono sali 97.4 0.00018 3.9E-09 72.3 5.3 37 20-57 1-37 (414)
237 TIGR00292 thiazole biosynthesi 97.4 0.0012 2.7E-08 61.6 10.5 201 159-413 21-251 (254)
238 PRK06183 mhpA 3-(3-hydroxyphen 97.4 0.0002 4.3E-09 74.6 5.7 37 17-55 8-44 (538)
239 PLN02546 glutathione reductase 97.4 0.0011 2.5E-08 68.9 11.2 89 18-118 251-349 (558)
240 PRK08274 tricarballylate dehyd 97.4 0.00023 4.9E-09 72.7 5.9 37 17-55 2-38 (466)
241 PLN02612 phytoene desaturase 97.4 0.00024 5.2E-09 74.2 6.1 44 16-61 90-133 (567)
242 PLN02985 squalene monooxygenas 97.4 0.00021 4.6E-09 73.7 5.5 39 15-55 39-77 (514)
243 PRK06481 fumarate reductase fl 97.4 0.00021 4.6E-09 73.7 5.5 39 18-58 60-98 (506)
244 TIGR02732 zeta_caro_desat caro 97.4 0.00018 3.9E-09 73.5 5.0 39 21-61 1-39 (474)
245 COG0493 GltD NADPH-dependent g 97.4 0.00034 7.4E-09 70.6 6.5 36 158-214 122-157 (457)
246 TIGR01377 soxA_mon sarcosine o 97.4 0.00023 5E-09 70.4 5.3 35 20-56 1-35 (380)
247 PRK05335 tRNA (uracil-5-)-meth 97.4 0.00022 4.9E-09 70.8 5.0 36 19-56 2-37 (436)
248 PRK11259 solA N-methyltryptoph 97.4 0.00025 5.5E-09 70.0 5.5 36 19-56 3-38 (376)
249 PLN02927 antheraxanthin epoxid 97.4 0.00021 4.6E-09 75.1 5.1 36 17-54 79-114 (668)
250 PTZ00367 squalene epoxidase; P 97.4 0.00022 4.8E-09 74.2 5.2 37 16-54 30-66 (567)
251 PRK08294 phenol 2-monooxygenas 97.4 0.00022 4.8E-09 75.5 5.2 37 17-55 30-67 (634)
252 PRK11728 hydroxyglutarate oxid 97.3 0.00024 5.2E-09 70.8 5.3 38 20-57 3-40 (393)
253 KOG1336 Monodehydroascorbate/f 97.3 0.0017 3.7E-08 64.3 10.6 96 19-126 213-319 (478)
254 PTZ00153 lipoamide dehydrogena 97.3 0.0014 3E-08 69.3 10.9 91 19-122 312-429 (659)
255 PRK07121 hypothetical protein; 97.3 0.00031 6.7E-09 72.3 5.9 41 18-60 19-59 (492)
256 PRK13369 glycerol-3-phosphate 97.3 0.00031 6.7E-09 72.4 5.9 40 17-58 4-43 (502)
257 COG0665 DadA Glycine/D-amino a 97.3 0.00032 6.9E-09 69.5 5.8 39 17-57 2-40 (387)
258 PRK11445 putative oxidoreducta 97.3 0.00025 5.4E-09 69.7 4.9 34 19-55 1-34 (351)
259 TIGR01292 TRX_reduct thioredox 97.3 0.0014 3.1E-08 62.3 10.0 32 161-213 2-33 (300)
260 PRK12266 glpD glycerol-3-phosp 97.3 0.00035 7.5E-09 72.1 5.9 39 18-58 5-43 (508)
261 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0021 4.5E-08 63.3 11.1 90 18-118 144-242 (364)
262 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.00027 5.9E-09 70.0 4.8 34 21-55 1-34 (382)
263 TIGR03329 Phn_aa_oxid putative 97.3 0.00033 7.2E-09 71.4 5.4 38 18-55 23-60 (460)
264 TIGR03364 HpnW_proposed FAD de 97.3 0.00036 7.8E-09 68.8 5.5 34 20-55 1-34 (365)
265 PRK06996 hypothetical protein; 97.3 0.00033 7.2E-09 70.0 5.1 40 15-54 7-48 (398)
266 PRK00711 D-amino acid dehydrog 97.3 0.00034 7.3E-09 70.2 5.2 34 20-55 1-34 (416)
267 PRK05257 malate:quinone oxidor 97.3 0.00036 7.9E-09 71.5 5.4 40 17-56 3-42 (494)
268 PRK10262 thioredoxin reductase 97.2 0.0024 5.2E-08 61.8 10.7 87 18-118 145-247 (321)
269 TIGR01789 lycopene_cycl lycope 97.2 0.00039 8.4E-09 68.8 5.2 38 21-58 1-38 (370)
270 PRK12837 3-ketosteroid-delta-1 97.2 0.00039 8.5E-09 71.9 5.3 38 18-58 6-43 (513)
271 PRK08641 sdhA succinate dehydr 97.2 0.00051 1.1E-08 72.2 5.6 38 18-57 2-39 (589)
272 PRK05945 sdhA succinate dehydr 97.2 0.00051 1.1E-08 72.0 5.4 39 19-57 3-41 (575)
273 PLN02172 flavin-containing mon 97.2 0.011 2.3E-07 60.3 14.8 35 158-213 9-43 (461)
274 PTZ00139 Succinate dehydrogena 97.1 0.00055 1.2E-08 72.2 5.3 39 18-58 28-66 (617)
275 PRK01747 mnmC bifunctional tRN 97.1 0.00061 1.3E-08 72.7 5.7 36 19-56 260-295 (662)
276 KOG2960 Protein involved in th 97.1 0.00011 2.4E-09 64.8 0.1 43 19-61 76-118 (328)
277 PRK08401 L-aspartate oxidase; 97.1 0.00065 1.4E-08 69.4 5.6 34 20-55 2-35 (466)
278 PLN00128 Succinate dehydrogena 97.1 0.00058 1.3E-08 72.2 5.3 37 19-57 50-86 (635)
279 PLN03000 amine oxidase 97.1 0.00073 1.6E-08 72.7 6.0 43 17-61 182-224 (881)
280 KOG2820 FAD-dependent oxidored 97.1 0.0026 5.5E-08 60.4 8.8 36 17-54 5-40 (399)
281 PRK12834 putative FAD-binding 97.1 0.00066 1.4E-08 70.8 5.6 40 18-59 3-44 (549)
282 TIGR00137 gid_trmFO tRNA:m(5)U 97.1 0.0006 1.3E-08 68.1 4.9 35 20-56 1-35 (433)
283 PRK11101 glpA sn-glycerol-3-ph 97.1 0.00076 1.6E-08 70.3 5.9 36 18-55 5-40 (546)
284 PF03486 HI0933_like: HI0933-l 97.1 0.0017 3.7E-08 64.9 8.1 126 161-346 2-166 (409)
285 COG0579 Predicted dehydrogenas 97.1 0.00079 1.7E-08 67.0 5.4 41 18-58 2-42 (429)
286 PTZ00363 rab-GDP dissociation 97.1 0.00076 1.7E-08 68.1 5.5 43 17-61 2-44 (443)
287 TIGR01320 mal_quin_oxido malat 97.1 0.00068 1.5E-08 69.4 5.2 36 20-55 1-36 (483)
288 PRK07804 L-aspartate oxidase; 97.1 0.00069 1.5E-08 70.5 5.2 38 18-57 15-52 (541)
289 PRK12835 3-ketosteroid-delta-1 97.1 0.00082 1.8E-08 70.5 5.8 40 17-58 9-48 (584)
290 PRK07057 sdhA succinate dehydr 97.1 0.00081 1.7E-08 70.7 5.7 36 18-55 11-46 (591)
291 PTZ00383 malate:quinone oxidor 97.1 0.0008 1.7E-08 68.9 5.5 39 17-55 43-81 (497)
292 PLN02661 Putative thiazole syn 97.0 0.012 2.5E-07 57.3 13.1 124 280-413 185-325 (357)
293 PRK12844 3-ketosteroid-delta-1 97.0 0.0009 1.9E-08 69.9 5.5 39 18-58 5-43 (557)
294 PRK09231 fumarate reductase fl 97.0 0.00085 1.8E-08 70.4 5.3 39 19-57 4-42 (582)
295 PF04820 Trp_halogenase: Trypt 97.0 0.00098 2.1E-08 67.7 5.5 35 21-55 1-36 (454)
296 COG1635 THI4 Ribulose 1,5-bisp 97.0 0.0078 1.7E-07 53.9 10.3 202 158-413 29-257 (262)
297 TIGR01813 flavo_cyto_c flavocy 97.0 0.00098 2.1E-08 67.5 5.4 38 21-59 1-38 (439)
298 TIGR01176 fum_red_Fp fumarate 97.0 0.00089 1.9E-08 70.2 5.2 40 19-58 3-42 (580)
299 TIGR01812 sdhA_frdA_Gneg succi 97.0 0.00084 1.8E-08 70.3 5.0 34 21-56 1-34 (566)
300 PLN02976 amine oxidase 97.0 0.001 2.2E-08 74.3 5.8 44 16-61 690-733 (1713)
301 PRK08275 putative oxidoreducta 97.0 0.00097 2.1E-08 69.6 5.4 38 18-55 8-45 (554)
302 PLN02464 glycerol-3-phosphate 97.0 0.0011 2.5E-08 70.0 5.8 40 18-59 70-109 (627)
303 PRK07803 sdhA succinate dehydr 97.0 0.0009 2E-08 70.8 5.0 37 18-56 7-43 (626)
304 PRK06452 sdhA succinate dehydr 96.9 0.00098 2.1E-08 69.7 5.2 37 18-56 4-40 (566)
305 PRK12839 hypothetical protein; 96.9 0.0013 2.9E-08 68.7 6.0 41 17-59 6-46 (572)
306 KOG2614 Kynurenine 3-monooxyge 96.9 0.0012 2.5E-08 64.4 5.0 35 19-55 2-36 (420)
307 PRK09078 sdhA succinate dehydr 96.9 0.0011 2.3E-08 69.9 5.2 36 18-55 11-46 (598)
308 KOG1335 Dihydrolipoamide dehyd 96.9 0.0019 4.1E-08 62.2 6.2 94 16-122 208-316 (506)
309 PRK12845 3-ketosteroid-delta-1 96.9 0.0013 2.9E-08 68.6 5.7 40 17-59 14-53 (564)
310 TIGR03140 AhpF alkyl hydropero 96.9 0.0057 1.2E-07 63.3 10.4 86 18-122 351-452 (515)
311 TIGR01316 gltA glutamate synth 96.9 0.0039 8.4E-08 63.4 8.9 36 18-55 271-306 (449)
312 PRK08958 sdhA succinate dehydr 96.9 0.0012 2.6E-08 69.3 5.4 38 18-57 6-43 (588)
313 COG2081 Predicted flavoprotein 96.9 0.015 3.2E-07 56.7 12.3 22 159-180 3-24 (408)
314 PRK13339 malate:quinone oxidor 96.9 0.0013 2.8E-08 67.2 5.5 40 18-57 5-44 (497)
315 COG2072 TrkA Predicted flavopr 96.9 0.0061 1.3E-07 61.8 10.2 36 158-213 7-42 (443)
316 TIGR02462 pyranose_ox pyranose 96.9 0.002 4.3E-08 66.5 6.7 39 20-60 1-39 (544)
317 PRK06854 adenylylsulfate reduc 96.9 0.0012 2.6E-08 69.6 5.1 35 19-55 11-47 (608)
318 PRK07573 sdhA succinate dehydr 96.9 0.0013 2.7E-08 69.8 5.2 37 18-56 34-70 (640)
319 PF07992 Pyr_redox_2: Pyridine 96.8 0.0029 6.3E-08 56.4 6.7 64 327-392 103-199 (201)
320 PRK12779 putative bifunctional 96.8 0.0036 7.9E-08 69.0 8.6 36 158-214 305-340 (944)
321 COG0029 NadB Aspartate oxidase 96.8 0.0019 4.1E-08 64.4 5.7 33 21-56 9-41 (518)
322 PRK06175 L-aspartate oxidase; 96.8 0.0013 2.8E-08 66.5 4.7 38 18-58 3-40 (433)
323 TIGR00551 nadB L-aspartate oxi 96.8 0.0015 3.3E-08 67.1 5.2 36 19-57 2-37 (488)
324 COG0445 GidA Flavin-dependent 96.8 0.0044 9.6E-08 62.5 8.1 34 18-53 3-36 (621)
325 PF01494 FAD_binding_3: FAD bi 96.8 0.0091 2E-07 57.9 10.4 34 161-215 3-36 (356)
326 PRK07395 L-aspartate oxidase; 96.8 0.0015 3.1E-08 68.2 5.0 38 18-58 8-45 (553)
327 PF00732 GMC_oxred_N: GMC oxid 96.8 0.0013 2.9E-08 62.7 4.0 36 20-56 1-36 (296)
328 PRK08071 L-aspartate oxidase; 96.7 0.0017 3.7E-08 67.0 5.0 37 19-58 3-39 (510)
329 PRK12831 putative oxidoreducta 96.7 0.01 2.2E-07 60.5 10.6 36 17-54 279-314 (464)
330 COG0562 Glf UDP-galactopyranos 96.7 0.0024 5.2E-08 60.2 5.2 41 19-61 1-41 (374)
331 PRK06069 sdhA succinate dehydr 96.7 0.0019 4.2E-08 67.8 5.2 40 19-58 5-45 (577)
332 PF13434 K_oxygenase: L-lysine 96.7 0.0048 1E-07 60.3 7.5 40 16-55 187-226 (341)
333 KOG2495 NADH-dehydrogenase (ub 96.7 0.0027 5.8E-08 62.1 5.6 94 18-122 217-331 (491)
334 PRK12843 putative FAD-binding 96.7 0.0024 5.2E-08 67.0 5.8 41 18-60 15-55 (578)
335 PRK08626 fumarate reductase fl 96.7 0.002 4.4E-08 68.4 5.1 37 18-56 4-40 (657)
336 PTZ00306 NADH-dependent fumara 96.7 0.0022 4.7E-08 72.6 5.3 40 18-59 408-447 (1167)
337 PRK06263 sdhA succinate dehydr 96.6 0.0023 5.1E-08 66.6 5.0 35 18-55 6-40 (543)
338 PRK14106 murD UDP-N-acetylmura 96.6 0.01 2.2E-07 60.3 9.5 75 18-117 4-78 (450)
339 PRK12770 putative glutamate sy 96.6 0.011 2.4E-07 58.1 9.3 34 19-54 172-206 (352)
340 TIGR01811 sdhA_Bsu succinate d 96.6 0.0021 4.6E-08 67.6 4.4 32 22-55 1-32 (603)
341 PLN02852 ferredoxin-NADP+ redu 96.6 0.011 2.4E-07 60.4 9.4 38 158-214 25-62 (491)
342 COG3075 GlpB Anaerobic glycero 96.6 0.0039 8.4E-08 59.0 5.4 34 19-54 2-35 (421)
343 TIGR02061 aprA adenosine phosp 96.5 0.0029 6.2E-08 66.6 5.0 33 21-55 1-37 (614)
344 PRK07364 2-octaprenyl-6-methox 96.5 0.018 4E-07 57.6 10.6 36 158-214 17-52 (415)
345 PRK06847 hypothetical protein; 96.5 0.031 6.7E-07 55.1 11.8 35 158-213 3-37 (375)
346 PRK09853 putative selenate red 96.5 0.011 2.3E-07 65.1 9.0 36 158-214 538-573 (1019)
347 COG1053 SdhA Succinate dehydro 96.4 0.0041 8.9E-08 64.6 5.3 39 17-57 4-42 (562)
348 PRK09077 L-aspartate oxidase; 96.4 0.004 8.7E-08 64.8 5.2 38 18-58 7-44 (536)
349 PLN02815 L-aspartate oxidase 96.4 0.0046 1E-07 64.9 5.3 38 18-58 28-65 (594)
350 PRK15317 alkyl hydroperoxide r 96.4 0.019 4.1E-07 59.5 9.8 82 18-117 350-447 (517)
351 COG0578 GlpA Glycerol-3-phosph 96.4 0.0058 1.2E-07 62.4 5.7 42 17-60 10-51 (532)
352 KOG0405 Pyridine nucleotide-di 96.3 0.0096 2.1E-07 56.8 6.6 94 12-117 182-285 (478)
353 PRK11749 dihydropyrimidine deh 96.3 0.023 5E-07 57.9 10.0 35 18-54 272-307 (457)
354 PRK06184 hypothetical protein; 96.3 0.054 1.2E-06 55.9 12.8 35 159-214 3-37 (502)
355 PRK12810 gltD glutamate syntha 96.3 0.022 4.8E-07 58.3 9.8 37 18-56 280-317 (471)
356 PRK02705 murD UDP-N-acetylmura 96.3 0.014 3.1E-07 59.4 8.2 77 21-117 2-78 (459)
357 PRK02106 choline dehydrogenase 96.3 0.006 1.3E-07 63.8 5.5 36 18-55 4-40 (560)
358 PF13738 Pyr_redox_3: Pyridine 96.2 0.0022 4.8E-08 57.4 1.9 32 163-214 1-32 (203)
359 KOG4254 Phytoene desaturase [C 96.2 0.0039 8.5E-08 61.2 3.6 49 9-59 3-52 (561)
360 PRK08205 sdhA succinate dehydr 96.2 0.0057 1.2E-07 64.3 5.0 34 19-55 5-38 (583)
361 TIGR01318 gltD_gamma_fam gluta 96.2 0.013 2.9E-07 59.8 7.5 36 158-214 140-175 (467)
362 PRK06126 hypothetical protein; 96.2 0.029 6.3E-07 58.5 10.2 35 158-213 6-40 (545)
363 COG1004 Ugd Predicted UDP-gluc 96.2 0.0074 1.6E-07 58.7 5.1 45 20-66 1-45 (414)
364 PRK12778 putative bifunctional 96.2 0.027 5.8E-07 61.1 10.0 36 18-55 569-605 (752)
365 PRK11445 putative oxidoreducta 96.1 0.066 1.4E-06 52.5 11.8 31 161-213 3-33 (351)
366 PF00743 FMO-like: Flavin-bind 96.1 0.0095 2.1E-07 61.7 6.1 36 159-215 1-36 (531)
367 PRK12809 putative oxidoreducta 96.1 0.016 3.5E-07 61.6 8.0 36 158-214 309-344 (639)
368 PRK13800 putative oxidoreducta 96.1 0.0059 1.3E-07 67.4 4.8 36 18-55 12-47 (897)
369 PF13454 NAD_binding_9: FAD-NA 96.1 0.062 1.4E-06 46.1 10.3 36 163-214 1-36 (156)
370 PTZ00188 adrenodoxin reductase 96.1 0.022 4.7E-07 57.8 8.3 37 158-214 38-74 (506)
371 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.0064 1.4E-07 53.9 3.9 86 20-117 1-86 (185)
372 KOG1399 Flavin-containing mono 96.1 0.056 1.2E-06 54.5 11.1 37 158-215 5-41 (448)
373 PRK07236 hypothetical protein; 96.1 0.069 1.5E-06 53.0 11.8 36 158-214 5-40 (386)
374 COG0644 FixC Dehydrogenases (f 96.0 0.05 1.1E-06 54.4 10.6 134 160-345 4-151 (396)
375 PF01134 GIDA: Glucose inhibit 96.0 0.047 1E-06 53.9 10.0 20 161-180 1-20 (392)
376 TIGR02032 GG-red-SF geranylger 96.0 0.09 1.9E-06 49.6 11.6 33 161-214 2-34 (295)
377 KOG1298 Squalene monooxygenase 96.0 0.0092 2E-07 57.6 4.6 35 17-53 43-77 (509)
378 PRK07512 L-aspartate oxidase; 96.0 0.0075 1.6E-07 62.4 4.4 34 18-55 8-41 (513)
379 PLN02463 lycopene beta cyclase 96.0 0.075 1.6E-06 53.9 11.5 34 159-213 28-61 (447)
380 PRK10157 putative oxidoreducta 95.9 0.071 1.5E-06 53.8 11.3 35 160-215 6-40 (428)
381 PRK08243 4-hydroxybenzoate 3-m 95.9 0.067 1.4E-06 53.3 10.8 34 160-214 3-36 (392)
382 TIGR01317 GOGAT_sm_gam glutama 95.8 0.023 5E-07 58.3 7.4 36 158-214 142-177 (485)
383 PRK07608 ubiquinone biosynthes 95.8 0.055 1.2E-06 53.6 9.9 34 160-214 6-39 (388)
384 PRK06185 hypothetical protein; 95.8 0.046 1E-06 54.6 9.3 35 158-213 5-39 (407)
385 PRK08244 hypothetical protein; 95.8 0.12 2.7E-06 53.1 12.6 34 160-214 3-36 (493)
386 PRK07045 putative monooxygenas 95.8 0.11 2.5E-06 51.5 11.9 36 159-215 5-40 (388)
387 PRK06834 hypothetical protein; 95.8 0.12 2.5E-06 53.2 12.2 34 159-213 3-36 (488)
388 TIGR03143 AhpF_homolog putativ 95.8 0.044 9.5E-07 57.3 9.2 61 18-95 142-202 (555)
389 PRK12769 putative oxidoreducta 95.8 0.025 5.4E-07 60.3 7.5 36 158-214 326-361 (654)
390 PRK10015 oxidoreductase; Provi 95.7 0.082 1.8E-06 53.4 10.8 35 160-215 6-40 (429)
391 KOG2852 Possible oxidoreductas 95.7 0.0061 1.3E-07 56.6 2.3 45 14-58 5-53 (380)
392 PRK09897 hypothetical protein; 95.6 0.072 1.6E-06 55.2 10.0 35 160-213 2-36 (534)
393 PF13241 NAD_binding_7: Putati 95.5 0.015 3.3E-07 46.3 3.6 35 18-54 6-40 (103)
394 PRK05868 hypothetical protein; 95.5 0.15 3.1E-06 50.5 11.4 35 160-215 2-36 (372)
395 PRK08132 FAD-dependent oxidore 95.4 0.14 3E-06 53.5 11.5 35 158-213 22-56 (547)
396 PRK06183 mhpA 3-(3-hydroxyphen 95.4 0.19 4E-06 52.4 12.4 36 158-214 9-44 (538)
397 PF01210 NAD_Gly3P_dh_N: NAD-d 95.4 0.026 5.7E-07 48.6 5.0 32 21-54 1-32 (157)
398 PF12831 FAD_oxidored: FAD dep 95.4 0.016 3.5E-07 58.5 4.2 46 280-343 102-147 (428)
399 PRK06475 salicylate hydroxylas 95.4 0.23 5E-06 49.6 12.5 34 160-214 3-36 (400)
400 KOG2404 Fumarate reductase, fl 95.4 0.02 4.4E-07 54.1 4.4 37 21-59 11-47 (477)
401 PRK07333 2-octaprenyl-6-methox 95.4 0.072 1.6E-06 53.1 8.8 34 161-214 3-37 (403)
402 COG0654 UbiH 2-polyprenyl-6-me 95.4 0.2 4.4E-06 49.8 12.0 33 159-212 2-34 (387)
403 PRK08773 2-octaprenyl-3-methyl 95.4 0.12 2.6E-06 51.4 10.3 35 158-213 5-39 (392)
404 COG2509 Uncharacterized FAD-de 95.3 0.16 3.4E-06 50.5 10.6 100 17-116 16-227 (486)
405 PRK08850 2-octaprenyl-6-methox 95.3 0.14 3.1E-06 51.2 10.8 33 159-212 4-36 (405)
406 KOG2844 Dimethylglycine dehydr 95.3 0.079 1.7E-06 54.8 8.7 36 16-53 36-72 (856)
407 COG0492 TrxB Thioredoxin reduc 95.3 0.14 3.1E-06 49.1 10.1 22 159-180 3-24 (305)
408 PRK07588 hypothetical protein; 95.3 0.2 4.3E-06 49.8 11.6 34 160-214 1-34 (391)
409 PRK12775 putative trifunctiona 95.3 0.052 1.1E-06 60.6 8.1 36 158-214 429-464 (1006)
410 KOG2311 NAD/FAD-utilizing prot 95.3 0.023 5E-07 56.4 4.5 35 17-53 26-60 (679)
411 TIGR03315 Se_ygfK putative sel 95.2 0.058 1.3E-06 59.6 8.2 36 158-214 536-571 (1012)
412 PRK06753 hypothetical protein; 95.2 0.22 4.8E-06 49.0 11.7 34 161-215 2-35 (373)
413 TIGR01470 cysG_Nterm siroheme 95.2 0.033 7.1E-07 50.3 5.3 34 18-53 8-41 (205)
414 PF06100 Strep_67kDa_ant: Stre 95.2 0.028 6.1E-07 56.5 5.2 43 19-61 2-46 (500)
415 KOG0399 Glutamate synthase [Am 95.2 0.08 1.7E-06 57.7 8.7 38 157-215 1783-1820(2142)
416 PLN02785 Protein HOTHEAD 95.2 0.025 5.4E-07 59.4 5.1 36 17-55 53-88 (587)
417 PRK08163 salicylate hydroxylas 95.2 0.11 2.3E-06 51.8 9.4 37 158-215 3-39 (396)
418 PRK09126 hypothetical protein; 95.2 0.15 3.2E-06 50.6 10.3 34 160-214 4-37 (392)
419 PRK06719 precorrin-2 dehydroge 95.1 0.04 8.6E-07 47.5 5.3 34 17-52 11-44 (157)
420 PRK05192 tRNA uridine 5-carbox 95.1 0.3 6.4E-06 51.2 12.3 32 160-212 5-36 (618)
421 COG4529 Uncharacterized protei 95.0 0.38 8.3E-06 48.3 12.4 21 160-180 2-22 (474)
422 PLN02985 squalene monooxygenas 95.0 0.29 6.2E-06 50.7 12.2 35 158-213 42-76 (514)
423 TIGR02023 BchP-ChlP geranylger 95.0 0.32 6.9E-06 48.4 12.1 31 161-212 2-32 (388)
424 TIGR02485 CobZ_N-term precorri 95.0 0.018 3.9E-07 58.2 3.2 30 24-55 1-30 (432)
425 TIGR01810 betA choline dehydro 94.9 0.025 5.4E-07 58.8 4.2 34 21-55 1-34 (532)
426 PLN02697 lycopene epsilon cycl 94.9 0.23 5.1E-06 51.4 11.2 21 160-180 109-129 (529)
427 PRK12814 putative NADPH-depend 94.9 0.17 3.8E-06 53.9 10.5 36 17-54 321-357 (652)
428 PRK08274 tricarballylate dehyd 94.9 0.51 1.1E-05 48.2 13.6 48 280-344 143-190 (466)
429 PRK01438 murD UDP-N-acetylmura 94.9 0.1 2.2E-06 53.5 8.5 35 158-213 15-49 (480)
430 TIGR02028 ChlP geranylgeranyl 94.9 0.16 3.5E-06 50.7 9.6 34 161-215 2-35 (398)
431 PRK06481 fumarate reductase fl 94.9 0.55 1.2E-05 48.5 13.7 50 280-346 202-252 (506)
432 TIGR01790 carotene-cycl lycope 94.8 0.17 3.8E-06 50.1 9.8 33 161-214 1-33 (388)
433 TIGR01372 soxA sarcosine oxida 94.8 0.14 3E-06 57.4 9.8 80 18-117 316-409 (985)
434 PRK08849 2-octaprenyl-3-methyl 94.8 0.18 3.9E-06 50.0 9.8 33 160-213 4-36 (384)
435 TIGR01988 Ubi-OHases Ubiquinon 94.7 0.18 3.9E-06 49.7 9.4 33 161-214 1-33 (385)
436 PF00899 ThiF: ThiF family; I 94.7 0.073 1.6E-06 44.4 5.7 35 19-54 2-36 (135)
437 KOG3855 Monooxygenase involved 94.7 0.041 8.9E-07 53.8 4.5 36 18-53 35-72 (481)
438 TIGR01813 flavo_cyto_c flavocy 94.6 0.69 1.5E-05 46.8 13.6 51 280-346 142-192 (439)
439 COG2303 BetA Choline dehydroge 94.6 0.039 8.5E-07 57.4 4.6 36 17-54 5-40 (542)
440 PRK06718 precorrin-2 dehydroge 94.6 0.064 1.4E-06 48.3 5.3 33 18-52 9-41 (202)
441 PRK04148 hypothetical protein; 94.6 0.066 1.4E-06 44.6 4.9 35 18-55 16-50 (134)
442 PRK07190 hypothetical protein; 94.5 0.29 6.3E-06 50.3 10.8 34 159-213 5-38 (487)
443 PRK05714 2-octaprenyl-3-methyl 94.5 0.19 4.2E-06 50.2 9.3 33 160-213 3-35 (405)
444 PF06039 Mqo: Malate:quinone o 94.5 0.058 1.3E-06 53.8 5.1 40 18-57 2-41 (488)
445 PF00890 FAD_binding_2: FAD bi 94.4 0.22 4.7E-06 49.9 9.5 64 259-347 141-204 (417)
446 COG3573 Predicted oxidoreducta 94.3 0.065 1.4E-06 51.0 4.9 35 18-54 4-38 (552)
447 PRK08020 ubiF 2-octaprenyl-3-m 94.3 0.34 7.5E-06 48.0 10.5 34 159-213 5-38 (391)
448 PRK13984 putative oxidoreducta 94.2 0.12 2.5E-06 54.7 7.3 37 157-214 281-317 (604)
449 PRK06996 hypothetical protein; 94.2 0.53 1.1E-05 46.9 11.6 36 158-213 10-48 (398)
450 COG0569 TrkA K+ transport syst 94.2 0.062 1.3E-06 49.2 4.5 33 20-54 1-33 (225)
451 KOG2853 Possible oxidoreductas 94.2 0.095 2.1E-06 50.1 5.6 38 18-55 85-124 (509)
452 PRK08013 oxidoreductase; Provi 94.2 0.38 8.3E-06 48.0 10.5 35 159-214 3-37 (400)
453 KOG2665 Predicted FAD-dependen 94.2 0.043 9.3E-07 51.8 3.3 40 17-56 46-85 (453)
454 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.081 1.8E-06 46.7 5.0 32 21-54 1-32 (180)
455 PRK11101 glpA sn-glycerol-3-ph 94.1 0.55 1.2E-05 49.0 11.9 21 160-180 7-27 (546)
456 PRK15116 sulfur acceptor prote 94.1 0.21 4.6E-06 46.9 7.8 36 18-54 29-64 (268)
457 TIGR02356 adenyl_thiF thiazole 94.0 0.21 4.5E-06 45.0 7.4 34 18-53 20-54 (202)
458 PRK12771 putative glutamate sy 94.0 0.17 3.8E-06 53.0 7.8 38 156-214 134-171 (564)
459 TIGR01984 UbiH 2-polyprenyl-6- 93.9 0.74 1.6E-05 45.4 12.0 34 161-214 1-34 (382)
460 TIGR02360 pbenz_hydroxyl 4-hyd 93.9 0.23 5.1E-06 49.4 8.4 34 160-214 3-36 (390)
461 PF01488 Shikimate_DH: Shikima 93.9 0.12 2.5E-06 43.3 5.2 34 18-53 11-45 (135)
462 COG1206 Gid NAD(FAD)-utilizing 93.9 0.061 1.3E-06 51.1 3.8 35 19-55 3-37 (439)
463 COG1086 Predicted nucleoside-d 93.8 0.36 7.8E-06 49.4 9.3 50 15-64 112-161 (588)
464 PRK12475 thiamine/molybdopteri 93.8 0.27 5.8E-06 48.0 8.2 35 18-54 23-58 (338)
465 PLN00093 geranylgeranyl diphos 93.7 0.75 1.6E-05 46.8 11.6 36 158-214 38-73 (450)
466 cd01483 E1_enzyme_family Super 93.6 0.33 7.1E-06 40.9 7.5 32 21-54 1-33 (143)
467 TIGR03219 salicylate_mono sali 93.5 0.97 2.1E-05 45.3 12.1 35 161-215 2-36 (414)
468 KOG1346 Programmed cell death 93.5 0.16 3.6E-06 49.7 6.0 94 18-122 346-451 (659)
469 PF01262 AlaDh_PNT_C: Alanine 93.5 0.14 3E-06 44.6 5.1 34 18-53 19-52 (168)
470 PRK07573 sdhA succinate dehydr 93.4 1.3 2.9E-05 47.1 13.3 49 280-344 182-230 (640)
471 PRK07538 hypothetical protein; 93.4 0.27 5.8E-06 49.3 7.7 33 161-214 2-34 (413)
472 TIGR00275 flavoprotein, HI0933 93.2 0.76 1.7E-05 45.9 10.7 18 163-180 1-18 (400)
473 PRK07121 hypothetical protein; 93.2 1.3 2.7E-05 45.7 12.6 50 280-346 189-239 (492)
474 cd00757 ThiF_MoeB_HesA_family 93.2 0.38 8.1E-06 44.1 7.7 35 18-53 20-54 (228)
475 PRK06249 2-dehydropantoate 2-r 93.1 0.16 3.4E-06 49.0 5.5 36 17-54 3-38 (313)
476 TIGR00551 nadB L-aspartate oxi 93.1 1.4 3E-05 45.4 12.6 48 281-346 142-189 (488)
477 TIGR00136 gidA glucose-inhibit 93.1 1.4 3E-05 46.2 12.5 20 161-180 2-21 (617)
478 KOG1238 Glucose dehydrogenase/ 93.0 0.12 2.5E-06 53.6 4.5 40 16-56 54-93 (623)
479 PRK07494 2-octaprenyl-6-methox 92.8 1.3 2.8E-05 43.8 11.7 36 158-214 6-41 (388)
480 TIGR02355 moeB molybdopterin s 92.8 0.53 1.1E-05 43.6 8.2 36 18-54 23-58 (240)
481 COG0445 GidA Flavin-dependent 92.8 0.65 1.4E-05 47.4 9.1 22 159-180 4-25 (621)
482 COG0686 Ald Alanine dehydrogen 92.7 0.22 4.7E-06 47.1 5.4 34 18-53 167-200 (371)
483 cd01485 E1-1_like Ubiquitin ac 92.6 0.58 1.2E-05 41.9 8.0 35 18-53 18-52 (198)
484 PF01593 Amino_oxidase: Flavin 92.6 0.12 2.7E-06 51.1 4.0 31 29-61 1-31 (450)
485 KOG0042 Glycerol-3-phosphate d 92.6 0.064 1.4E-06 54.2 1.9 41 18-60 66-106 (680)
486 PRK05708 2-dehydropantoate 2-r 92.5 0.18 3.8E-06 48.5 4.8 34 19-54 2-35 (305)
487 PF02558 ApbA: Ketopantoate re 92.5 0.21 4.6E-06 42.3 4.9 29 22-52 1-29 (151)
488 PRK06129 3-hydroxyacyl-CoA deh 92.5 0.18 3.9E-06 48.5 4.8 34 20-55 3-36 (308)
489 PRK05690 molybdopterin biosynt 92.5 0.58 1.3E-05 43.4 8.0 35 18-53 31-65 (245)
490 PRK05732 2-octaprenyl-6-methox 92.4 2.5 5.3E-05 41.8 13.1 22 159-180 3-24 (395)
491 cd01075 NAD_bind_Leu_Phe_Val_D 92.3 0.34 7.3E-06 43.5 6.1 36 16-53 25-60 (200)
492 PRK06175 L-aspartate oxidase; 92.3 1.3 2.8E-05 44.8 11.0 48 280-345 141-188 (433)
493 PRK06617 2-octaprenyl-6-methox 92.2 1.6 3.4E-05 43.1 11.3 20 161-180 3-22 (374)
494 PF01488 Shikimate_DH: Shikima 92.2 0.27 5.9E-06 41.1 4.9 36 158-213 11-46 (135)
495 TIGR01812 sdhA_frdA_Gneg succi 92.1 1.7 3.8E-05 45.5 12.0 50 280-345 141-190 (566)
496 KOG4716 Thioredoxin reductase 92.0 0.14 3.1E-06 48.8 3.3 86 19-117 198-298 (503)
497 PRK07688 thiamine/molybdopteri 92.0 0.61 1.3E-05 45.5 7.9 34 18-53 23-57 (339)
498 PF00056 Ldh_1_N: lactate/mala 91.8 0.37 8.1E-06 40.6 5.4 35 20-54 1-36 (141)
499 COG1251 NirB NAD(P)H-nitrite r 91.8 0.46 9.9E-06 50.0 7.0 93 18-122 144-245 (793)
500 PRK12921 2-dehydropantoate 2-r 91.8 0.23 4.9E-06 47.5 4.6 31 20-52 1-31 (305)
No 1
>PLN02852 ferredoxin-NADP+ reductase
Probab=100.00 E-value=1.8e-50 Score=405.32 Aligned_cols=408 Identities=74% Similarity=1.183 Sum_probs=339.1
Q ss_pred hhhhhhcccc-----cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHH
Q 014990 4 ARAWLSRSFT-----ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQF 78 (415)
Q Consensus 4 ~~~~~~~~~~-----~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~ 78 (415)
++.|+++... .+....++|+|||+||||++||..|++..++++|+|||+.+.+||+++|++.|.+...+.+...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~ 85 (491)
T PLN02852 6 ARTWLSRALSFSNSSSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQF 85 (491)
T ss_pred hhhccccccccccCCCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHH
Confidence 4566666532 23456789999999999999999999732239999999999999999999989998889888888
Q ss_pred HHHhhccCeEEEeceEeceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 79 SRVVQHERCSFFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.+.+...++.|..++.++.+++.++....||+||||||+..++.+++||.+.++++++.+|..|++++++.......+..
T Consensus 86 ~~~~~~~~v~~~~nv~vg~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~ 165 (491)
T PLN02852 86 SRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKS 165 (491)
T ss_pred HHHHHHCCeEEEcCEEECccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccC
Confidence 88888889999999999999998888778999999999966788899999999999999999988876554333323346
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.+..++|..+||.+.+++.++..++++|+++.|+.+...+|+.+|++++.+.+++.+.+.
T Consensus 166 gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~ 245 (491)
T PLN02852 166 SDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIK 245 (491)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeec
Confidence 89999999999999999999998899999999999999999999999999999999999999999999999999888888
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCC-
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGG- 317 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~- 317 (415)
..++...+.........+.++|..+++.+++...........++|.++|..+|++|+.+.+.++++.++++..+.+...
T Consensus 246 ~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~ 325 (491)
T PLN02852 246 EADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAA 325 (491)
T ss_pred hhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCc
Confidence 7777655666666667888999999998875321100011347999999999999972110136899999988776543
Q ss_pred CCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccch
Q 014990 318 GPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGII 397 (415)
Q Consensus 318 ~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~ 397 (415)
.+|....+++|+.++++||.||.++|+++.++..++|....++..+++|++.+++. ++|+.|||||+|||.+||.+++
T Consensus 326 ~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~--~~T~ipGvyAaGDi~~Gp~gvI 403 (491)
T PLN02852 326 GSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSAS--GADTEPGLYVVGWLKRGPTGII 403 (491)
T ss_pred ccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCC--CccCCCCEEEeeeEecCCCCee
Confidence 34555455678888999999999999996555566777667788888999999875 6799999999999999999999
Q ss_pred hhhhhhHHHHHhhccc
Q 014990 398 ATNLYCAEETVSSLSL 413 (415)
Q Consensus 398 ~~a~~~g~~~a~~i~~ 413 (415)
..++.+|+.+|.+|..
T Consensus 404 ~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 404 GTNLTCAEETVASIAE 419 (491)
T ss_pred eecHhhHHHHHHHHHH
Confidence 9999999999999875
No 2
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-47 Score=354.47 Aligned_cols=381 Identities=54% Similarity=0.874 Sum_probs=333.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+||||+++|..|.++.++.+|+|+|+.+.++|+.+||++|++++.+.....+.+.+++.++.|..|+.++.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~ 98 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR 98 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc
Confidence 45599999999999999999999877799999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHH
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARI 177 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~ 177 (415)
++++.+.+..||+||||.|+..++.++|||.+..+|.++.+|..|+++.|+.+++.+++. +.+|+|||.|++++++|..
T Consensus 99 dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls-~~~vvIvG~GNVAlDvARi 177 (468)
T KOG1800|consen 99 DVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLS-GRKVVIVGNGNVALDVARI 177 (468)
T ss_pred cccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccc-cceEEEEccCchhhhhhhh
Confidence 999999999999999999998899999999999999999999999999999988888885 9999999999999999999
Q ss_pred HhcCccccc-ccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchH
Q 014990 178 LLRPTEELA-TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (415)
Q Consensus 178 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (415)
|..+...|. .+||..+++..+++...++|+++.|+.+...+|+.+||||++..++....+...++..-...+......+
T Consensus 178 Lls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~R 257 (468)
T KOG1800|consen 178 LLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHR 257 (468)
T ss_pred hhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccC
Confidence 998554454 8999999999999999999999999999999999999999999999998888877776666666666688
Q ss_pred HHHHHHHHHHHHHhccCC--CCC-CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEE
Q 014990 257 IQRRVYELLSKAAASASS--QPM-LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDL 333 (415)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i 333 (415)
+|+++.+++.+....+.. .++ ...+...+.|...|..|. . ..+.+.++.+..+.+. +.. .+++|+.+++
T Consensus 258 pRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~--~-~~~~v~~~~~~~t~l~----~~~-~~~tg~~e~~ 329 (468)
T KOG1800|consen 258 PRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAIL--P-GADGVSGVRFQVTILE----GTQ-AVPTGAFETL 329 (468)
T ss_pred chhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhc--c-CcccccceEEEeeeeh----hhc-ccccCceEee
Confidence 999999999988775321 222 234456677888888998 4 3344777877665443 122 3457888999
Q ss_pred ecCeeEEeeccCCccCC-CCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 334 DCGMVLKSIGYKSVPVN-GLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 334 ~~D~vi~atG~~p~~~~-~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
+|+++|-++||+..+++ ++||+...|+..+..|++.+.. ..|+||+.||+.+||.++++.+|.++-.+|..|.
T Consensus 330 p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~------~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~ 403 (468)
T KOG1800|consen 330 PCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSG------CSPGLYASGWVKHGPTGVIATTMQDAFEVADTIV 403 (468)
T ss_pred ccceeEeeeeecccccCCCCCcccccCcccCCCceEEeec------cCCceEEEeeeccCCcceeeehhhhHHHHHHHHH
Confidence 99999999999987766 7899999999999999998432 6799999999999999999999999999999886
Q ss_pred c
Q 014990 413 L 413 (415)
Q Consensus 413 ~ 413 (415)
.
T Consensus 404 q 404 (468)
T KOG1800|consen 404 Q 404 (468)
T ss_pred H
Confidence 4
No 3
>PTZ00188 adrenodoxin reductase; Provisional
Probab=100.00 E-value=1.7e-42 Score=341.94 Aligned_cols=379 Identities=26% Similarity=0.503 Sum_probs=301.2
Q ss_pred cccccCCCCCCeEEEECCCHHHHHHHHHHH-HcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeE
Q 014990 10 RSFTALSSNPLRVCVVGSGPAGFYTAEKTL-KAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCS 88 (415)
Q Consensus 10 ~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~-~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (415)
+++..+.++.++|+|||+||||++||.+|+ +.+ ++|+|||+.+.+||+++|++.|++...+.+...+...+...+++
T Consensus 30 ~~~~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~ 107 (506)
T PTZ00188 30 KCFFTNEAKPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYR 107 (506)
T ss_pred cccCCCCCCCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeE
Confidence 455555567889999999999999999876 456 99999999999999999999999988888888888878778899
Q ss_pred EEeceEeceEEEecccccccCEEEEccCCCCCCCCCCC------------CCC----CCCeeechhhHHHhcCCCCCC--
Q 014990 89 FFGNVTLGSSVSLSELRQLYHVVVLAYGAESDRALGIP------------GED----LIGVHSAREFVWWYNGHPDGK-- 150 (415)
Q Consensus 89 ~~~~~~v~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~------------g~~----~~~v~~~~~~~~~~~~~~~~~-- 150 (415)
+..+..++.+++.++....||+||+|+|+... .+| |.+ ..+++++.+|..|++.+++..
T Consensus 108 f~gnv~VG~Dvt~eeL~~~YDAVIlAtGA~~l---~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~ 184 (506)
T PTZ00188 108 FFGNVHVGVDLKMEELRNHYNCVIFCCGASEV---SIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRC 184 (506)
T ss_pred EEeeeEecCccCHHHHHhcCCEEEEEcCCCCC---CCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccc
Confidence 99999999999888888899999999999532 334 444 569999999999999987542
Q ss_pred -CCC---CCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 151 -NLS---PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 151 -~~~---~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
... ......++++|||+|++++++|..|.+..++|+.|||.+.+++++++...++|+++.|+.+...+|+.+||+|
T Consensus 185 ~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrE 264 (506)
T PTZ00188 185 KAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRE 264 (506)
T ss_pred ccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHH
Confidence 111 0112567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHH----HHHHHHHHHhccCCCCC--CCceeEEEEeccccccccccCCC
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR----VYELLSKAAASASSQPM--LGQRELHFVFFRKPDSFLESNER 300 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~~ 300 (415)
+.+.+++.+.+...++.............+.++| ..+++.+++... ..+. ...+.+.++|..+|++++ . .
T Consensus 265 L~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~-~~~~~~~~~r~i~l~F~~sP~ei~--~-~ 340 (506)
T PTZ00188 265 LISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVE-KNKEFYKTYKIIEFIFYFEIRQIR--P-I 340 (506)
T ss_pred HhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhc-cCccCCCCceEEEEEccCCceEEE--C-C
Confidence 9999998888876665321011111122444444 666777765310 0111 145789999999999998 5 3
Q ss_pred CCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCccc
Q 014990 301 SGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVE 380 (415)
Q Consensus 301 ~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~ 380 (415)
+++++++++..+.+.. +.. ..+|+.++++||+|+-++||+..+++++||+ .. ..+.+|++.. ..
T Consensus 341 ~~~v~~v~~~~n~l~~---~~~--~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd-~~--~~n~~grv~~--------~~ 404 (506)
T PTZ00188 341 DGAMKNVELELNKNVP---MSF--SSFKENKVLVTPLVIFATGFKKSNFAENLYN-QS--VQMFKEDIGQ--------HK 404 (506)
T ss_pred CCcEeEEEEEEeeccc---Ccc--CCCCeeEEEEcCEEEEcccccCCCCCCCCcc-cc--CCCCCCcccC--------CC
Confidence 5789999998766543 221 3467888999999999999999888888886 32 3344455531 26
Q ss_pred CCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 381 NGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 381 p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
||+|++||+.+||.+++++.|.++..++..|..
T Consensus 405 ~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~ 437 (506)
T PTZ00188 405 FAIFKAGWFDKGPKGNIASQILNSKNSTHLVLN 437 (506)
T ss_pred CCcEEeeecCcCCCceeccCcccHHHHHHHHHH
Confidence 999999999999999999999999999988764
No 4
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=1.4e-39 Score=350.41 Aligned_cols=317 Identities=22% Similarity=0.346 Sum_probs=249.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.++.++|+|||||||||+||.+|++.| ++|+|||+.+.+||++.|++ |.+..++++.+...+.++..|++|+.++.+
T Consensus 303 ~~~gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 303 AAVKPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEe
Confidence 356899999999999999999999999 99999999999999999998 888889999998889999999999999999
Q ss_pred ceEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC-CCC--CCCCCCCCeEEEEcCChhH
Q 014990 96 GSSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KNL--SPDLKSTDTAVILGQGNVA 171 (415)
Q Consensus 96 ~~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~--~~~~~~~k~V~VVG~G~sg 171 (415)
+++++.+++.. .||+||||||++.|+.+++||.+.++++++.+|+...+..... ... ......+|+|+|||||++|
T Consensus 380 G~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA 459 (944)
T PRK12779 380 GKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTA 459 (944)
T ss_pred ccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHH
Confidence 99999888765 7999999999977999999999999999999998754321100 000 0011268999999999999
Q ss_pred HHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHh
Q 014990 172 LDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEE 251 (415)
Q Consensus 172 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~ 251 (415)
+|+|..+.+ .|+ +|+++.|+.... +|....+
T Consensus 460 ~D~A~ta~R--------------------~Ga-~Vtlv~rr~~~~----------------------------mpa~~~e 490 (944)
T PRK12779 460 MDAARTAKR--------------------LGG-NVTIVYRRTKSE----------------------------MPARVEE 490 (944)
T ss_pred HHHHHHHHH--------------------cCC-EEEEEEecCccc----------------------------ccccHHH
Confidence 999999986 566 699999875321 2322211
Q ss_pred hhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCC-CCCeeeEEEeeeee-cCCCCCcceeccCCc
Q 014990 252 MKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNER-SGHVSGVHFEKTAL-KGGGPGKQYAVGTGE 329 (415)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~-~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~ 329 (415)
+. ... ++|+++++...++++. .++ .+.+.++++....+ ..+.+|....+.+|+
T Consensus 491 ~~---------~a~--------------eeGV~~~~~~~p~~i~--~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~ 545 (944)
T PRK12779 491 LH---------HAL--------------EEGINLAVLRAPREFI--GDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGE 545 (944)
T ss_pred HH---------HHH--------------HCCCEEEeCcceEEEE--ecCCCCEEEEEEEEEEEeccccCcCceeeecCCc
Confidence 11 111 5689999999999997 411 23577777665444 234456554455677
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
+.+++||.||+|+|+.|+.. + .....++..+++|.+.+|+.. ++|+.|||||+|||+++++.++ .|+.+|+.||.
T Consensus 546 e~~i~aD~VI~AiG~~p~~~--l-~~~~~gle~~~~G~I~vd~~~-~~Ts~pgVFAaGD~~~G~~~vv-~Ai~eGr~AA~ 620 (944)
T PRK12779 546 IERVPVDLVIMALGNTANPI--M-KDAEPGLKTNKWGTIEVEKGS-QRTSIKGVYSGGDAARGGSTAI-RAAGDGQAAAK 620 (944)
T ss_pred eEEEECCEEEEcCCcCCChh--h-hhcccCceECCCCCEEECCCC-CccCCCCEEEEEcCCCChHHHH-HHHHHHHHHHH
Confidence 77999999999999999752 1 223356778888999999755 8899999999999998877666 79999999999
Q ss_pred hcccc
Q 014990 410 SLSLI 414 (415)
Q Consensus 410 ~i~~~ 414 (415)
+|++.
T Consensus 621 ~I~~~ 625 (944)
T PRK12779 621 EIVGE 625 (944)
T ss_pred HHHHH
Confidence 99764
No 5
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-39 Score=326.93 Aligned_cols=317 Identities=27% Similarity=0.393 Sum_probs=240.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHH-HHHHHHHHhhccCeEEEece
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKI-VINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++.++|+||||||||+++|.+|++.| ++|+|||+.+.+||.+.|++ |.+..+.+ +.....+.++..+++++.++
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~ 212 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNV 212 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCC
Confidence 3457899999999999999999999999 99999999999999999887 65544444 66677777888899999999
Q ss_pred EeceEEEecccc--cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCC-CCCCCCCCCCeEEEEcCChh
Q 014990 94 TLGSSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGK-NLSPDLKSTDTAVILGQGNV 170 (415)
Q Consensus 94 ~v~~~v~~~~~~--~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~k~V~VVG~G~s 170 (415)
.++.+++.++.. ..||+||||||++.|+.+++||.+.++++++.+|+...+....+. ........+++|+|||+|++
T Consensus 213 ~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~v 292 (464)
T PRK12831 213 VVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNV 292 (464)
T ss_pred EECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHH
Confidence 887766665542 259999999999668889999999999999998886543221111 00112346899999999999
Q ss_pred HHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHH
Q 014990 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (415)
Q Consensus 171 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 250 (415)
|+|+|..+.+ .|.+ |+++.|+.... +|....
T Consensus 293 a~d~A~~l~r--------------------~Ga~-Vtlv~r~~~~~----------------------------m~a~~~ 323 (464)
T PRK12831 293 AMDAARTALR--------------------LGAE-VHIVYRRSEEE----------------------------LPARVE 323 (464)
T ss_pred HHHHHHHHHH--------------------cCCE-EEEEeecCccc----------------------------CCCCHH
Confidence 9999999986 5664 99999875321 222111
Q ss_pred hhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CC
Q 014990 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TG 328 (415)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g 328 (415)
++. .+. ++||++++...+.++. .++++.+.++++..+.+. .+.+|....+. +|
T Consensus 324 e~~----------~a~-------------~eGV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g 378 (464)
T PRK12831 324 EVH----------HAK-------------EEGVIFDLLTNPVEIL--GDENGWVKGMKCIKMELGEPDASGRRRPVEIEG 378 (464)
T ss_pred HHH----------HHH-------------HcCCEEEecccceEEE--ecCCCeEEEEEEEEEEecCcCCCCCccceecCC
Confidence 110 111 6689999999999987 423567888887655432 22344432322 45
Q ss_pred ceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
+..++++|+||+|+|+.|+. .+... .|+.++++|.+.+|+.+ ++|+.|||||+|||..++..++ .|+.+|+.|
T Consensus 379 ~~~~i~~D~Vi~AiG~~p~~----~~~~~~~gl~~~~~G~i~vd~~~-~~Ts~pgVfAaGD~~~g~~~v~-~Ai~~G~~A 452 (464)
T PRK12831 379 SEFVLEVDTVIMSLGTSPNP----LISSTTKGLKINKRGCIVADEET-GLTSKEGVFAGGDAVTGAATVI-LAMGAGKKA 452 (464)
T ss_pred ceEEEECCEEEECCCCCCCh----hhhcccCCceECCCCcEEECCCC-CccCCCCEEEeCCCCCCchHHH-HHHHHHHHH
Confidence 66689999999999999975 23233 57778888999999876 7899999999999998777655 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 453 A~~I~~~ 459 (464)
T PRK12831 453 AKAIDEY 459 (464)
T ss_pred HHHHHHH
Confidence 9999864
No 6
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=100.00 E-value=9.7e-39 Score=322.26 Aligned_cols=316 Identities=24% Similarity=0.356 Sum_probs=238.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.....+.++..+++++.+..+
T Consensus 130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 130 PSTHKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 346789999999999999999999999 99999999999999998887 655566677777777778889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC--CCCCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG--KNLSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+.+++.++....||+||||||+..|+.|++||.+.++++++.+++......... .........+++|+|||+|++|+|
T Consensus 207 ~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 286 (449)
T TIGR01316 207 GKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVD 286 (449)
T ss_pred CCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHH
Confidence 777776655567999999999866888899999988999988877543321110 000111236899999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
+|..+.+ .|. +|+++.|+...+ ++.....+
T Consensus 287 ~A~~l~~--------------------~G~-~Vtlv~~~~~~~----------------------------~~~~~~~~- 316 (449)
T TIGR01316 287 SARTALR--------------------LGA-EVHCLYRRTRED----------------------------MTARVEEI- 316 (449)
T ss_pred HHHHHHH--------------------cCC-EEEEEeecCccc----------------------------CCCCHHHH-
Confidence 9999986 565 599999885321 12111111
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CCceE
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEFE 331 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g~~~ 331 (415)
+.+. ++||+++++..++++. .++++++.++++..+.+. .+.+|....++ +++..
T Consensus 317 ---------~~l~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~ 372 (449)
T TIGR01316 317 ---------AHAE-------------EEGVKFHFLCQPVEII--GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAEC 372 (449)
T ss_pred ---------HHHH-------------hCCCEEEeccCcEEEE--EcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceE
Confidence 1111 6799999999999987 423567878877654332 12234322221 45566
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhc
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i 411 (415)
++++|+||+|+|+.|+. .+....++.++++|.+.+|+. ++|+.|||||+|||..++..+. .|+.||+.||.+|
T Consensus 373 ~i~~D~Vi~AiG~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~Ts~~~VfA~GD~~~g~~~v~-~Ai~~G~~AA~~I 445 (449)
T TIGR01316 373 KLEADAVIVAIGNGSNP----IMAETTRLKTSERGTIVVDED--QRTSIPGVFAGGDIILGAATVI-RAMGQGKRAAKSI 445 (449)
T ss_pred EEECCEEEECCCCCCCc----hhhhccCcccCCCCeEEeCCC--CccCCCCEEEecCCCCCcHHHH-HHHHHHHHHHHHH
Confidence 89999999999999975 244556778888899999986 8899999999999987776555 7999999999999
Q ss_pred cccC
Q 014990 412 SLIS 415 (415)
Q Consensus 412 ~~~~ 415 (415)
++.+
T Consensus 446 ~~~L 449 (449)
T TIGR01316 446 NEYL 449 (449)
T ss_pred HhhC
Confidence 8753
No 7
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=5.1e-38 Score=341.06 Aligned_cols=317 Identities=26% Similarity=0.387 Sum_probs=245.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||||||||+||.+|+++| ++|+|||+.+.+||.+.+++ |.+..++++.....+.+...|+++..++.++
T Consensus 428 ~~~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg 504 (1006)
T PRK12775 428 KKLGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIG 504 (1006)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccC
Confidence 35789999999999999999999999 99999999999999999998 7777788888888888889999999998888
Q ss_pred eEEEecccc--cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC-C-CCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELR--QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-D-GKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~--~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++.. ..||+||||||++.++.+++||.+.++++++.+|+...+... . ..........+|+|+|||+|++|+
T Consensus 505 ~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~ 584 (1006)
T PRK12775 505 KTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAM 584 (1006)
T ss_pred CccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHH
Confidence 777766553 469999999999668999999999999999999987764211 0 000011233689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..+.+ .|++.|+++.|+.... +|....++
T Consensus 585 D~A~~a~r--------------------lGa~~Vtiv~rr~~~e----------------------------m~a~~~e~ 616 (1006)
T PRK12775 585 DCLRVAKR--------------------LGAPTVRCVYRRSEAE----------------------------APARIEEI 616 (1006)
T ss_pred HHHHHHHH--------------------cCCCEEEEEeecCccc----------------------------CCCCHHHH
Confidence 99988875 6888899998875432 22211111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceE
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFE 331 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~ 331 (415)
+.+ .+.||++++...+.++. .++++.+.++++..+.+. .+.+|....+++|+..
T Consensus 617 ----------~~a-------------~eeGI~~~~~~~p~~i~--~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~ 671 (1006)
T PRK12775 617 ----------RHA-------------KEEGIDFFFLHSPVEIY--VDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFK 671 (1006)
T ss_pred ----------HHH-------------HhCCCEEEecCCcEEEE--eCCCCeEEEEEEEEEEecccCCCCCccccCCCceE
Confidence 011 16789999999999986 424678888888765432 2334554444456667
Q ss_pred EEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc----CCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI----SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~----~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
+++||.||+|+|+.|+.. + +....++.++++|.+.+|+ .+ ++|++|||||+||+++++..++ .|+.+|+.|
T Consensus 672 ~i~~D~Vi~AiG~~p~~~--~-~~~~~gl~l~~~G~I~vd~~~v~~~-~~Ts~pgVFAaGDv~~G~~~vv-~Ai~~Gr~A 746 (1006)
T PRK12775 672 DLECDTVIYALGTKANPI--I-TQSTPGLALNKWGNIAADDGKLEST-QSTNLPGVFAGGDIVTGGATVI-LAMGAGRRA 746 (1006)
T ss_pred EEEcCEEEECCCcCCChh--h-hhccCCcccCCCCcEEeCCCccccC-cCCCCCCEEEecCcCCCccHHH-HHHHHHHHH
Confidence 899999999999999752 1 1122356777789998886 23 7899999999999998887666 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 747 A~~I~~~ 753 (1006)
T PRK12775 747 ARSIATY 753 (1006)
T ss_pred HHHHHHH
Confidence 9998764
No 8
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=7.7e-38 Score=334.17 Aligned_cols=316 Identities=24% Similarity=0.368 Sum_probs=243.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+||||||||++||.+|++.| ++|+|||+.+.+||.+.|++ |.+..++++.....+.+.+.+++++.++.+
T Consensus 428 ~~~~~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 428 EKNGKKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 346889999999999999999999999 99999999999999999998 777777777777777788889999999998
Q ss_pred ceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCC-CCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN-LSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+++++.++.. ..||+||||||++.++.+++||.+.++++++.+|+...+....+.. .......+++|+|||+|++|+|
T Consensus 505 ~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d 584 (752)
T PRK12778 505 GKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMD 584 (752)
T ss_pred CCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHH
Confidence 8887777654 4699999999996688899999999999999988875532211110 0111336899999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
+|..+.+ .+.++|+++.|+.... +|....++
T Consensus 585 ~A~~~~r--------------------~Ga~~Vtlv~r~~~~~----------------------------~~~~~~e~- 615 (752)
T PRK12778 585 SARTAKR--------------------LGAERVTIVYRRSEEE----------------------------MPARLEEV- 615 (752)
T ss_pred HHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH-
Confidence 9999986 6777799999875321 22211111
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceec-cCCceE
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAV-GTGEFE 331 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~-~~g~~~ 331 (415)
+.+. ++||++++...+.++. .++++.+.++++..+.+. .+.+|....+ .+|++.
T Consensus 616 ---------~~~~-------------~~GV~i~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~ 671 (752)
T PRK12778 616 ---------KHAK-------------EEGIEFLTLHNPIEYL--ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTF 671 (752)
T ss_pred ---------HHHH-------------HcCCEEEecCcceEEE--ECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeE
Confidence 1111 6689999999999986 423567888887655442 2233442222 246667
Q ss_pred EEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 332 DLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 332 ~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
+++||+||+|+|++|+. .+... .++.++++|++.+|++ ++|+.|||||+|||++++..++ .|+.+|+.||.+
T Consensus 672 ~i~~D~Vi~A~G~~p~~----~l~~~~~gl~~~~~G~i~vd~~--~~Ts~~gVfA~GD~~~g~~~vv-~Av~~G~~AA~~ 744 (752)
T PRK12778 672 TVDVDLVIVSVGVSPNP----LVPSSIPGLELNRKGTIVVDEE--MQSSIPGIYAGGDIVRGGATVI-LAMGDGKRAAAA 744 (752)
T ss_pred EEECCEEEECcCCCCCc----cccccccCceECCCCCEEeCCC--CCCCCCCEEEeCCccCCcHHHH-HHHHHHHHHHHH
Confidence 89999999999999975 22222 3677888899999987 6899999999999998776655 799999999999
Q ss_pred cccc
Q 014990 411 LSLI 414 (415)
Q Consensus 411 i~~~ 414 (415)
|++.
T Consensus 745 I~~~ 748 (752)
T PRK12778 745 IDEY 748 (752)
T ss_pred HHHH
Confidence 9864
No 9
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=100.00 E-value=1.2e-36 Score=308.29 Aligned_cols=313 Identities=27% Similarity=0.411 Sum_probs=235.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
....++|+||||||||+++|..|++.+ ++|+|||+.+.+||.+.+++ |.+..+.++.....+.++..+++++.++.+
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 213 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEV 213 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEE
Confidence 456789999999999999999999999 99999999999999998887 666666777777788888889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+..++.++....||+||+|||+..++.+++||.+.++++++.+++........ ...+..+++|+|||+|.+|+|+|
T Consensus 214 ~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~----~~~~~~g~~VvViGgG~~g~e~A 289 (457)
T PRK11749 214 GRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVA----DYDLPVGKRVVVIGGGNTAMDAA 289 (457)
T ss_pred CCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccc----cccCCCCCeEEEECCCHHHHHHH
Confidence 66665555456899999999996678889999988899998888766542210 01123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.++|+++.|+.... +|.....
T Consensus 290 ~~l~~--------------------~G~~~Vtlv~~~~~~~----------------------------~~~~~~~---- 317 (457)
T PRK11749 290 RTAKR--------------------LGAESVTIVYRRGREE----------------------------MPASEEE---- 317 (457)
T ss_pred HHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHH----
Confidence 99985 5777999999875321 2221111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~~i~ 334 (415)
.+.+. +.||+++++..+.++. . +++.+.++++....+. .+..|......++++++++
T Consensus 318 ------~~~~~-------------~~GV~i~~~~~v~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~ 375 (457)
T PRK11749 318 ------VEHAK-------------EEGVEFEWLAAPVEIL--G-DEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLP 375 (457)
T ss_pred ------HHHHH-------------HCCCEEEecCCcEEEE--e-cCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEE
Confidence 01111 6789999999999987 4 3444556766544321 1222332211245667899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
||.|||++|++|+.. + +....++.++++|++.+|+.+ ++|+.|||||+||++.++..+. .|+.||+.||.+|++.
T Consensus 376 ~D~vi~a~G~~p~~~--l-~~~~~gl~~~~~g~i~vd~~~-~~Ts~~~VfA~GD~~~~~~~~~-~A~~~G~~aA~~I~~~ 450 (457)
T PRK11749 376 ADLVIKAIGQTPNPL--I-LSTTPGLELNRWGTIIADDET-GRTSLPGVFAGGDIVTGAATVV-WAVGDGKDAAEAIHEY 450 (457)
T ss_pred CCEEEECccCCCCch--h-hccccCccCCCCCCEEeCCCC-CccCCCCEEEeCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999751 1 123456777888999999844 8899999999999986655444 7999999999999764
No 10
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=1.2e-36 Score=320.25 Aligned_cols=318 Identities=23% Similarity=0.343 Sum_probs=240.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
.+.++|+||||||||+++|..|++.| ++|+|||+.+.+||++.+++ |.+..++++.....+.++..++++..++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 46789999999999999999999999 99999999999999999998 7777777887777778888899999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCC-CCCCCC---CCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGH-PDGKNL---SPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~-~~~~~~---~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.......||+|++|||+..++.+++||.+.++++++.+|+...... ...... ......+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 76666555568999999999976778899999999999887775322110 000000 00113689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..+.+ .++++|+++.|+.... +|....++
T Consensus 482 d~A~~a~r--------------------~ga~~Vt~i~~~~~~~----------------------------~~~~~~e~ 513 (654)
T PRK12769 482 DCVRTALR--------------------HGASNVTCAYRRDEAN----------------------------MPGSKKEV 513 (654)
T ss_pred HHHHHHHH--------------------cCCCeEEEeEecCCCC----------------------------CCCCHHHH
Confidence 99988775 5778899999875432 22221111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceecc-CCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVG-TGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~-~g~~ 330 (415)
+.+. ++||+++++..++++. .++++.+.++++....+. .+.+|...... +|+.
T Consensus 514 ----------~~~~-------------~~Gv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~ 568 (654)
T PRK12769 514 ----------KNAR-------------EEGANFEFNVQPVALE--LNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSE 568 (654)
T ss_pred ----------HHHH-------------HcCCeEEeccCcEEEE--ECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCce
Confidence 1111 6789999999999986 323577888887654431 23345432222 5666
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC--CCCcccCCeeeeeccccCCccchhhhhhhHHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETV 408 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~--~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a 408 (415)
.++++|+||+|+|+.|+.. .+....++.++++|.+.+|... .++|+.|||||+||+.++++.++ .|+.+|+.||
T Consensus 569 ~~i~~D~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv-~Ai~~Gr~AA 644 (654)
T PRK12769 569 FVMPADAVIMAFGFNPHGM---PWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVV-TAMAEGRHAA 644 (654)
T ss_pred EEEECCEEEECccCCCCcc---ccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHH-HHHHHHHHHH
Confidence 7899999999999999752 2445567888889999988521 17899999999999998777655 7999999999
Q ss_pred hhcccc
Q 014990 409 SSLSLI 414 (415)
Q Consensus 409 ~~i~~~ 414 (415)
.+|++.
T Consensus 645 ~~I~~~ 650 (654)
T PRK12769 645 QGIIDW 650 (654)
T ss_pred HHHHHH
Confidence 999865
No 11
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=316.43 Aligned_cols=307 Identities=25% Similarity=0.366 Sum_probs=232.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+..++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.+...+.+...+++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 45789999999999999999999999 99999999999999999987 6666777777777777888899999998876
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVAR 176 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~ 176 (415)
.+++.+.....||+||+|||+..++.+++||.+.+++++..+++....... ....+++|+|||+|++|+|+|.
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~-------~~~~gk~VvVIGgG~~a~e~A~ 340 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGT-------ALHPGKKVVVIGGGNTAIDAAR 340 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCC-------cccCCCeEEEECCCHHHHHHHH
Confidence 666555555579999999999656778999998888988877776543211 1336899999999999999999
Q ss_pred HHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchH
Q 014990 177 ILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSR 256 (415)
Q Consensus 177 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 256 (415)
.+.+ .+.++|+++.|+.... +|....++.
T Consensus 341 ~l~~--------------------~Ga~~Vtlv~r~~~~~----------------------------mpa~~~ei~--- 369 (652)
T PRK12814 341 TALR--------------------LGAESVTILYRRTREE----------------------------MPANRAEIE--- 369 (652)
T ss_pred HHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHHH---
Confidence 9885 6778999999876322 222211111
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceecc-CCceEEEe
Q 014990 257 IQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEFEDLD 334 (415)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~-~g~~~~i~ 334 (415)
+.+ ++||+++++..+.++. . +++.+ .++...... ..+.+|....+. +|+..+++
T Consensus 370 ------~a~--------------~eGV~i~~~~~~~~i~--~-~~~~~-~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 425 (652)
T PRK12814 370 ------EAL--------------AEGVSLRELAAPVSIE--R-SEGGL-ELTAIKMQQGEPDESGRRRPVPVEGSEFTLQ 425 (652)
T ss_pred ------HHH--------------HcCCcEEeccCcEEEE--e-cCCeE-EEEEEEEEecccCCCCCCcceecCCceEEEE
Confidence 111 5689999999999987 4 34433 232211111 112234322222 45666899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+|.||+++|+.|+. .+....++.++.+|++.+|+.+ ++|+.|||||+||+..++..+. .|+.||+.||.+|+++
T Consensus 426 ~D~VI~AiG~~p~~----~ll~~~gl~~~~~G~I~vd~~~-~~Ts~pgVfA~GDv~~g~~~v~-~Ai~~G~~AA~~I~~~ 499 (652)
T PRK12814 426 ADTVISAIGQQVDP----PIAEAAGIGTSRNGTVKVDPET-LQTSVAGVFAGGDCVTGADIAI-NAVEQGKRAAHAIDLF 499 (652)
T ss_pred CCEEEECCCCcCCc----ccccccCccccCCCcEeeCCCC-CcCCCCCEEEcCCcCCCchHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999975 3445567788888999999866 8999999999999987766544 7999999999999764
No 12
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=6.3e-36 Score=313.62 Aligned_cols=317 Identities=22% Similarity=0.345 Sum_probs=241.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||+||||+++|..|++.| ++|+|||+.+.+||++.|++ |.+..++++.+...+.++..+++++.++.++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 384 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIG 384 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccC
Confidence 46899999999999999999999999 99999999999999999998 6566677777777788888999999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC----CCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG----HPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++....||+|++|||+..++.+++||.+.++++++.+|+..... .............+|+|+|||+|.+++
T Consensus 385 ~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~ 464 (639)
T PRK12809 385 RDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTM 464 (639)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 7766666566899999999997677789999999999998877654311 111001111123689999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
++|..+.+ .|+++|+++.|+.... +|....++
T Consensus 465 d~a~~~~~--------------------~Ga~~Vt~v~rr~~~~----------------------------~~~~~~e~ 496 (639)
T PRK12809 465 DCLRTSIR--------------------LNAASVTCAYRRDEVS----------------------------MPGSRKEV 496 (639)
T ss_pred HHHHHHHH--------------------cCCCeEEEeeecCccc----------------------------CCCCHHHH
Confidence 99988764 5888999999875432 22222211
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceecc-CCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVG-TGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~-~g~~ 330 (415)
. .. .++||++++...++++. .++++.+.++++....+ ..+.+|...+.. .|++
T Consensus 497 ~---------~a--------------~~eGv~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 551 (639)
T PRK12809 497 V---------NA--------------REEGVEFQFNVQPQYIA--CDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSE 551 (639)
T ss_pred H---------HH--------------HHcCCeEEeccCCEEEE--ECCCCeEEEEEEEEEEecCcCCCCCccceecCCce
Confidence 1 11 16789999999999996 42356788777654433 223345433322 5667
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC---CCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS---GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~---~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
.++++|+||+|+|+.|+.. .+....++.++++|.+.+|+. + ++|+.|+|||+||+.+++..++ .|+.+|+.|
T Consensus 552 ~~i~aD~Vi~AiG~~p~~~---~~~~~~gl~~~~~G~i~vd~~~~~~-~~Ts~~gVfA~GD~~~g~~~vv-~Ai~~Gr~A 626 (639)
T PRK12809 552 FELPADVLIMAFGFQAHAM---PWLQGSGIKLDKWGLIQTGDVGYLP-TQTHLKKVFAGGDAVHGADLVV-TAMAAGRQA 626 (639)
T ss_pred EEEECCEEEECcCCCCCcc---ccccccCcccCCCCCEEeCCCcccC-cccCCCCEEEcCCCCCCchHHH-HHHHHHHHH
Confidence 7999999999999999652 244556788888899988752 3 7899999999999998776555 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 627 A~~i~~~ 633 (639)
T PRK12809 627 ARDMLTL 633 (639)
T ss_pred HHHHHHH
Confidence 9999864
No 13
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=5.4e-36 Score=318.15 Aligned_cols=302 Identities=25% Similarity=0.366 Sum_probs=228.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
.+.++|+||||||||++||..|++.| ++|+|||+.+.+||.+.+++ |.+..+.+.+....+.+...+++++.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 46889999999999999999999999 99999999999999998876 777777777777777778889999999877
Q ss_pred eEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+++.+.... .||+||||||++.++.++++|.+ .+++++.+++..++... .....+++|+|||+|++|+|+|
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~------~~~~~GKrVVVIGGGnVAmD~A 684 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG------TALKLGKHVVVVGGGNTAMDAA 684 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc------ccccCCCEEEEECCChHHHHHH
Confidence 345555444 69999999999767778888875 57888888776553211 1133689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ ..+.++|+++.|+.... +|....++.
T Consensus 685 r~a~R-------------------lgGakeVTLVyRr~~~~----------------------------MPA~~eEle-- 715 (1019)
T PRK09853 685 RAALR-------------------VPGVEKVTVVYRRTKQE----------------------------MPAWREEYE-- 715 (1019)
T ss_pred HHHHh-------------------cCCCceEEEEEccCccc----------------------------ccccHHHHH--
Confidence 88775 12557999999985321 222211111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~ 335 (415)
+.+ ++||++++...+.++. . ++.+...... .. ..+..|....+.++++.+++|
T Consensus 716 -------~Al--------------eeGVe~~~~~~p~~I~--~--dG~l~~~~~~-lg-~~d~~Gr~~~v~tg~~~~I~a 768 (1019)
T PRK09853 716 -------EAL--------------EDGVEFKELLNPESFD--A--DGTLTCRVMK-LG-EPDESGRRRPVETGETVTLEA 768 (1019)
T ss_pred -------HHH--------------HcCCEEEeCCceEEEE--c--CCcEEEEEEE-ee-cccCCCceEEeeCCCeEEEEe
Confidence 111 4589999999998886 3 4544322111 00 112345444445677789999
Q ss_pred CeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 336 D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+||+|+|..|+. .+....|+.++++|++.+|+. ++|+.|||||+|||++++..+. .|+.||+.||.+|..
T Consensus 769 D~VIvAIG~~Pnt----elle~~GL~ld~~G~I~VDet--lqTs~pgVFAaGD~a~Gp~tvv-~Ai~qGr~AA~nI~~ 839 (1019)
T PRK09853 769 DTVITAIGEQVDT----ELLKANGIPLDKKGWPVVDAN--GETSLTNVYMIGDVQRGPSTIV-AAIADARRAADAILS 839 (1019)
T ss_pred CEEEECCCCcCCh----hHHHhcCccccCCCCEEeCCC--cccCCCCEEEEeccccCchHHH-HHHHHHHHHHHHHhh
Confidence 9999999999975 344556777888899999875 7899999999999998887666 799999999999975
No 14
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=100.00 E-value=1.3e-35 Score=300.68 Aligned_cols=317 Identities=25% Similarity=0.364 Sum_probs=235.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++.++|+|||+||||+++|..|++.| ++|+|+|+.+.+||++.+++ |.+..++++.....+.+...+++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 36789999999999999999999999 99999999999999999987 6666677787777788888899999999887
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhc----CCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYN----GHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
.+++.++....||+||+|||+...+.+++||.+.++++++.+|+.... ..............+++|+|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 665555544579999999999656778999999999999877754321 1111001111112589999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
++|..+.+ .+.++|+++.|++... +|....++
T Consensus 296 d~A~~a~~--------------------~Ga~~Vtvv~r~~~~~----------------------------~~~~~~e~ 327 (467)
T TIGR01318 296 DCVRTAIR--------------------LGAASVTCAYRRDEAN----------------------------MPGSRREV 327 (467)
T ss_pred HHHHHHHH--------------------cCCCeEEEEEecCccc----------------------------CCCCHHHH
Confidence 99988775 5777899999876432 22211111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceec-cCCce
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAV-GTGEF 330 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~-~~g~~ 330 (415)
+.+. ++||+++++..+.++. .++++.+.++++..... ..+.+|..... .+|+.
T Consensus 328 ----------~~~~-------------~~GV~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~ 382 (467)
T TIGR01318 328 ----------ANAR-------------EEGVEFLFNVQPVYIE--CDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSE 382 (467)
T ss_pred ----------HHHH-------------hcCCEEEecCCcEEEE--ECCCCeEEEEEEEEEEecccCCCCCccceecCCce
Confidence 1111 6689999999999986 32356677777654322 12233432222 14666
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc---CCCCCcccCCeeeeeccccCCccchhhhhhhHHHH
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI---SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEET 407 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~---~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~ 407 (415)
.+++||.||+++|++|+.. .+....++.++++|++.+|+ .. ++|+.|+|||+||+..++..+. .|+.+|+.|
T Consensus 383 ~~i~~D~Vi~a~G~~p~~~---~~~~~~gl~~~~~g~i~vd~~~~~~-~~T~~~gVfa~GD~~~~~~~~~-~Ai~~G~~a 457 (467)
T TIGR01318 383 FVLPADVVIMAFGFQPHAM---PWLAGHGITLDSWGRIITGDVSYLP-YQTTNPKIFAGGDAVRGADLVV-TAVAEGRQA 457 (467)
T ss_pred EEEECCEEEECCcCCCCcc---ccccccCccCCCCCCEEeCCccccC-ccCCCCCEEEECCcCCCccHHH-HHHHHHHHH
Confidence 7899999999999999642 24455677788889999983 22 7899999999999987665444 799999999
Q ss_pred Hhhcccc
Q 014990 408 VSSLSLI 414 (415)
Q Consensus 408 a~~i~~~ 414 (415)
|.+|++.
T Consensus 458 A~~i~~~ 464 (467)
T TIGR01318 458 AQGILDW 464 (467)
T ss_pred HHHHHHH
Confidence 9999865
No 15
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=2.9e-35 Score=298.93 Aligned_cols=322 Identities=24% Similarity=0.313 Sum_probs=230.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+..++|+||||||||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..+.++.....+.+...+++++.++.++
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 45789999999999999999999999 99999999999999999887 6666666777777777888899999998886
Q ss_pred eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC-CCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP-DGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
.+++.+.....||+||+|||+..++.+++||.+.++++++.+|+....... ...........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 554444444589999999999668888999999899999887765432110 0000011123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.++|+++.+..... ... .....+|.....
T Consensus 298 ~~~~~--------------------~ga~~Vt~~~~~~~~~---~~~-----------------~~~~~~~~~~~~---- 333 (471)
T PRK12810 298 GTAIR--------------------QGAKSVTQRDIMPMPP---SRR-----------------NKNNPWPYWPMK---- 333 (471)
T ss_pred HHHHH--------------------cCCCeEEEccccCCCc---ccc-----------------ccccCCcccchH----
Confidence 87765 5777888544332100 000 000000000000
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC 335 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~ 335 (415)
...+.+. +.||+++++..+.++. . +++++.++++..+.+. +|.+.. ..++.+++++
T Consensus 334 ----~~~~~~~-------------~~GV~i~~~~~~~~i~--~-~~g~v~~V~~~~~~~~---~g~~~~-~~g~~~~i~~ 389 (471)
T PRK12810 334 ----LEVSNAH-------------EEGVEREFNVQTKEFE--G-ENGKVTGVKVVRTELG---EGDFEP-VEGSEFVLPA 389 (471)
T ss_pred ----HHHHHHH-------------HcCCeEEeccCceEEE--c-cCCEEEEEEEEEEEec---CCCccc-cCCceEEEEC
Confidence 0011111 5689999999999997 5 4778888887655431 222111 1455678999
Q ss_pred CeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 336 GMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 336 D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|.||+|+|++|+.. .|....++.++++|.+.+|+.. ++|+.|||||+|||+.++..+. .|+.||+.||.+|++.
T Consensus 390 D~VI~A~G~~p~~~---~l~~~~gl~~~~~g~i~vd~~~-~~Ts~~gVfa~GD~~~g~~~~~-~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 390 DLVLLAMGFTGPEA---GLLAQFGVELDERGRVAAPDNA-YQTSNPKVFAAGDMRRGQSLVV-WAIAEGRQAARAIDAY 463 (471)
T ss_pred CEEEECcCcCCCch---hhccccCcccCCCCCEEeCCCc-ccCCCCCEEEccccCCCchhHH-HHHHHHHHHHHHHHHH
Confidence 99999999999642 2445667778888999998433 8899999999999997665544 7999999999998764
No 16
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=9.7e-35 Score=310.11 Aligned_cols=301 Identities=26% Similarity=0.378 Sum_probs=223.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
...++|+||||||||++||.+|++.| ++|+|||+.+.+||.+.+.+ |.+..+.+.+....+.+...+++++.++..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~- 610 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP- 610 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc-
Confidence 35689999999999999999999999 99999999999999998876 776666777776667777789999887542
Q ss_pred eEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 97 SSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 97 ~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+++.+... ..||+||||||++.+++++++|.. .+++.+.+++..+..... ....+++|+|||+|++|+|+|
T Consensus 611 -d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~~------~~~~GK~VVVIGGGnvAmD~A 682 (1012)
T TIGR03315 611 -DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGPT------INPLGKHVVVVGGGNTAMDAA 682 (1012)
T ss_pred -ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhcccc------ccccCCeEEEECCCHHHHHHH
Confidence 23334433 369999999999767777888864 577778777765543211 123689999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ ..|.++|+++.|+.... +|....++.
T Consensus 683 r~a~R-------------------l~Ga~kVtLVyRr~~~~----------------------------Mpa~~eEl~-- 713 (1012)
T TIGR03315 683 RAALR-------------------VPGVEKVTVVYRRTKRY----------------------------MPASREELE-- 713 (1012)
T ss_pred HHHHH-------------------hCCCceEEEEEccCccc----------------------------cccCHHHHH--
Confidence 88875 23667999999875321 222211111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~~~~i~ 334 (415)
+.+ ++||.+++...+.++. ++.+ ++....+ ..+..|....+.+|+..+++
T Consensus 714 -------~al--------------eeGVe~~~~~~p~~I~-----~g~l---~v~~~~l~~~d~sGr~~~v~~Gee~~I~ 764 (1012)
T TIGR03315 714 -------EAL--------------EDGVDFKELLSPESFE-----DGTL---TCEVMKLGEPDASGRRRPVGTGETVDLP 764 (1012)
T ss_pred -------HHH--------------HcCCEEEeCCceEEEE-----CCeE---EEEEEEeecccCCCceeeecCCCeEEEE
Confidence 111 4589999988888885 3333 2221111 12233544444467777899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
||+||+|+|+.|+. .+....++.++++|++.+|+.+ ++|+.|||||+|||+.++..+. .|+.||+.||.+|..
T Consensus 765 aD~VIvAiG~~Pnt----~lle~~GL~ld~~G~I~VD~~~-~~Ts~pgVFAaGD~a~GP~tVv-~AIaqGr~AA~nIl~ 837 (1012)
T TIGR03315 765 ADTVIAAVGEQVDT----DLLQKNGIPLDEYGWPVVNQAT-GETNITNVFVIGDANRGPATIV-EAIADGRKAANAILS 837 (1012)
T ss_pred eCEEEEecCCcCCh----HHHHhcCcccCCCCCEEeCCCC-CccCCCCEEEEeCcCCCccHHH-HHHHHHHHHHHHHhc
Confidence 99999999999965 3445567788888999999866 7899999999999987777665 799999999999974
No 17
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=100.00 E-value=1.1e-34 Score=294.88 Aligned_cols=330 Identities=23% Similarity=0.296 Sum_probs=232.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+||+++|..|++.+ ++|+|||+.+.+||.+.|++ |.+...+++.....+.++..+++++.++.++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 5589999999999999999999999 99999999999999999987 66655666776666777888999999988865
Q ss_pred EEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCC---CCCCCCCCCCCCCeEEEEcCChhHHHH
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHP---DGKNLSPDLKSTDTAVILGQGNVALDV 174 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~k~V~VVG~G~sg~e~ 174 (415)
+++.+.....||+||+|||+..++.+++||.+.++++++.+++....... ....+......+|+|+|||+|++|+|+
T Consensus 219 ~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~ 298 (485)
T TIGR01317 219 DISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADC 298 (485)
T ss_pred ccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHH
Confidence 55444444579999999999658889999999999999887765432210 000111112368999999999999999
Q ss_pred HHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhc
Q 014990 175 ARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKN 254 (415)
Q Consensus 175 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (415)
|..+.+ .+.+.|+++.+.+......... ..+|.......
T Consensus 299 a~~a~~--------------------~ga~~V~vv~~~~~~~~~~~~~--------------------~~~~~~~~~~e- 337 (485)
T TIGR01317 299 VGTSLR--------------------HGAASVHQFEIMPKPPEARAKD--------------------NPWPEWPRVYR- 337 (485)
T ss_pred HHHHHH--------------------cCCCEEEEEEecCCChhhcccc--------------------cCCCccchhhh-
Confidence 877664 5778999998765321000000 00111100000
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCCceeE-EEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc-CCceEE
Q 014990 255 SRIQRRVYELLSKAAASASSQPMLGQREL-HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGEFED 332 (415)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~-~g~~~~ 332 (415)
....+.... ...|+ .+++...+.++. .++++.+.++++..+.+..+.+|...++. .|+..+
T Consensus 338 ------~~~a~~e~~---------~~~gv~~~~~~~~~~~i~--~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~ 400 (485)
T TIGR01317 338 ------VDYAHEEAA---------AHYGRDPREYSILTKEFI--GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEV 400 (485)
T ss_pred ------hHHHHHhhh---------hhcCccceEEecCcEEEE--EcCCCeEEEEEEEEEEeccCCCCCccceecCCceEE
Confidence 001111100 02344 345677888886 42246888888766655445566533332 566678
Q ss_pred EecCeeEEeeccC-CccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhc
Q 014990 333 LDCGMVLKSIGYK-SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSL 411 (415)
Q Consensus 333 i~~D~vi~atG~~-p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i 411 (415)
++||+||+|+|+. |+. .+....++.++++|.+.+++.. ++|+.|||||+|||+.++..+. .|+.+|+.||.+|
T Consensus 401 i~~D~Vi~AiG~~~p~~----~~~~~~gl~~~~~G~i~~~~~~-~~Ts~~gVfAaGD~~~g~~~~~-~Av~~G~~AA~~i 474 (485)
T TIGR01317 401 FEADLVLLAMGFVGPEQ----ILLDDFGVKKTRRGNISAGYDD-YSTSIPGVFAAGDCRRGQSLIV-WAINEGRKAAAAV 474 (485)
T ss_pred EECCEEEEccCcCCCcc----ccccccCcccCCCCCEEecCCC-ceECCCCEEEeeccCCCcHHHH-HHHHHHHHHHHHH
Confidence 9999999999997 543 3445567777878988665544 8999999999999987776655 6999999999999
Q ss_pred ccc
Q 014990 412 SLI 414 (415)
Q Consensus 412 ~~~ 414 (415)
++.
T Consensus 475 ~~~ 477 (485)
T TIGR01317 475 DRY 477 (485)
T ss_pred HHH
Confidence 764
No 18
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=2.8e-34 Score=281.62 Aligned_cols=324 Identities=26% Similarity=0.359 Sum_probs=219.9
Q ss_pred hhhhhhcccccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhh
Q 014990 4 ARAWLSRSFTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (415)
-+.|+++. .+....++|+|||+|++|+++|..|++.+ .+|++||+.+.+++.+.++. +.+..+.+......+.+.
T Consensus 5 ~~~~~~~~--~~~~~~~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~l~ 79 (352)
T PRK12770 5 KFAFMCKE--KPPPTGKKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGI-PEFRIPIERVREGVKELE 79 (352)
T ss_pred hhhhhccc--CCCCCCCEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecC-cccccCHHHHHHHHHHHH
Confidence 35677773 33456789999999999999999999998 99999999999998876654 222222222333333444
Q ss_pred ccCeEEEeceEeceE---------------EEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCC
Q 014990 84 HERCSFFGNVTLGSS---------------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPD 148 (415)
Q Consensus 84 ~~~~~~~~~~~v~~~---------------v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~ 148 (415)
..+++++.++.+... +..+.....||+||||||++.++.|++||.+.++++++.++...+.....
T Consensus 80 ~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~ 159 (352)
T PRK12770 80 EAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKL 159 (352)
T ss_pred hCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccc
Confidence 458888888766211 01111224799999999995577889999888888887666544332110
Q ss_pred -CCCC-CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 149 -GKNL-SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 149 -~~~~-~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
.... ......+++|+|||+|.+|+|+|..|.+ .+.++|+++.|+.........
T Consensus 160 ~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~--------------------~g~~~Vtvi~~~~~~~~~~~~----- 214 (352)
T PRK12770 160 GYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVL--------------------LGAEKVYLAYRRTINEAPAGK----- 214 (352)
T ss_pred cccccccccccCCCEEEEECCCHHHHHHHHHHHH--------------------cCCCeEEEEeecchhhCCCCH-----
Confidence 0000 0001147899999999999999999875 466679999887532111100
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~ 306 (415)
+..+.+. .++|+++++.++.++. . ++.+..
T Consensus 215 ---------------------------------~~~~~l~-------------~~gi~i~~~~~v~~i~--~--~~~~~~ 244 (352)
T PRK12770 215 ---------------------------------YEIERLI-------------ARGVEFLELVTPVRII--G--EGRVEG 244 (352)
T ss_pred ---------------------------------HHHHHHH-------------HcCCEEeeccCceeee--c--CCcEeE
Confidence 0111121 5689999999999986 4 456666
Q ss_pred EEEeeeeecC-CCCCccee-ccCCceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCe
Q 014990 307 VHFEKTALKG-GGPGKQYA-VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGL 383 (415)
Q Consensus 307 v~~~~~~~~~-~~~g~~~~-~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~v 383 (415)
+++...+..+ ++.+...+ ..++++++++||.||+++|++|+. .+... .++.++++|++.+|++ ++|+.|+|
T Consensus 245 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~----~l~~~~~g~~~~~~g~i~vd~~--~~t~~~~v 318 (352)
T PRK12770 245 VELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTP----PFAKECLGIELNRKGEIVVDEK--HMTSREGV 318 (352)
T ss_pred EEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCc----hhhhcccCceecCCCcEeeCCC--cccCCCCE
Confidence 7665433211 00111111 124566689999999999999965 23333 5777788899999987 78999999
Q ss_pred eeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 384 YVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 384 faiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|++|||+.++.. +..|+.||+.+|.+|...
T Consensus 319 yaiGD~~~~~~~-~~~A~~~g~~aa~~i~~~ 348 (352)
T PRK12770 319 FAAGDVVTGPSK-IGKAIKSGLRAAQSIHEW 348 (352)
T ss_pred EEEcccccCcch-HHHHHHHHHHHHHHHHHH
Confidence 999999876654 448999999999998754
No 19
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-35 Score=300.45 Aligned_cols=330 Identities=21% Similarity=0.299 Sum_probs=257.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|.|||.|||||+||..|-+.| +.|+++||.+++||++.||+ |.+...+.+.++..+++...++.|..|+++
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn~ei 1858 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTNTEI 1858 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEeeccc
Confidence 457899999999999999999999999 99999999999999999999 888788888888889999999999999999
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC-CCC-CCCCCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG-HPD-GKNLSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~-~~~-~~~~~~~~~~~k~V~VVG~G~sg~e 173 (415)
++.+..+.....+|++|+|+|++.|+.+|+||.+.++++.+.+|++.-.. ..+ ....+.....+|+|+|||||.+|-+
T Consensus 1859 gk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~d 1938 (2142)
T KOG0399|consen 1859 GKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTD 1938 (2142)
T ss_pred cccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccc
Confidence 99999988888999999999998899999999999999999999874321 111 1111222347999999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
|...-.+ .|.+.|. ...+.|.|+..+-..
T Consensus 1939 cigtsvr--------------------hg~~sv~-------------------------------n~ellp~pp~~ra~~ 1967 (2142)
T KOG0399|consen 1939 CIGTSVR--------------------HGCKSVG-------------------------------NFELLPQPPPERAPD 1967 (2142)
T ss_pred ccccchh--------------------hccceec-------------------------------ceeecCCCCcccCCC
Confidence 9977775 5766652 234566777777778
Q ss_pred chHHHHHHHHHHHHHHhccCCC--CCC-CceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceecc-CCc
Q 014990 254 NSRIQRRVYELLSKAAASASSQ--PML-GQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVG-TGE 329 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~-~g~ 329 (415)
++|++|-.. ....+++.+. +.. ..+--.+ .-++++ .++++.+.++..-++.|+.+..|.|..+. .++
T Consensus 1968 npwpqwprv---frvdygh~e~~~~~g~dpr~y~v----ltk~f~--~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~s 2038 (2142)
T KOG0399|consen 1968 NPWPQWPRV---FRVDYGHAEAKEHYGSDPRTYSV----LTKRFI--GDDNGNVTGLETVRVEWEKDDKGRWQMKEINNS 2038 (2142)
T ss_pred CCCccCceE---EEeecchHHHHHHhCCCcceeee----eeeeee--ccCCCceeeEEEEEEEEEecCCCceEEEEcCCc
Confidence 888876432 0000000000 000 0111111 123555 43678999999999999999999977764 778
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHh
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVS 409 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~ 409 (415)
++.++||+||+|.||..+... ..++.++..+.++.+..-... ..++++++||+|||.+|.+.++ .|+.+|+++|.
T Consensus 2039 ee~~eadlv~lamgf~gpe~~---~~~~~~~~~d~rsni~t~~~~-y~t~v~~vfaagdcrrgqslvv-wai~egrq~a~ 2113 (2142)
T KOG0399|consen 2039 EEIIEADLVILAMGFVGPEKS---VIEQLNLKTDPRSNILTPKDS-YSTDVAKVFAAGDCRRGQSLVV-WAIQEGRQAAR 2113 (2142)
T ss_pred ceeeecceeeeeccccCcchh---hhhhcCcccCccccccCCCcc-ccccccceeecccccCCceEEE-EEehhhhHHHH
Confidence 889999999999999985522 345666777878877765544 7899999999999999999888 68999999999
Q ss_pred hccc
Q 014990 410 SLSL 413 (415)
Q Consensus 410 ~i~~ 413 (415)
++..
T Consensus 2114 ~vd~ 2117 (2142)
T KOG0399|consen 2114 QVDE 2117 (2142)
T ss_pred HHHH
Confidence 8863
No 20
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.6e-33 Score=293.25 Aligned_cols=320 Identities=24% Similarity=0.291 Sum_probs=228.6
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+|||+|+||+++|..|++.| ++|+|||+.+.+||.+.+++ |.+..++++.....+.++..+++++.++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 356 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRV 356 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEe
Confidence 346889999999999999999999999 99999999999999998887 666566666666667788889999999888
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+.+++.+.....||+||+|||+..++.+++||.+..+++++.+++..++..... .......+++|+|||||.+|+|+|
T Consensus 357 ~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~--~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 357 GKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRG--EGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred CCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhcc--CCCcCCCCCcEEEECCchHHHHHH
Confidence 765555555568999999999966889999999888999988877655422100 000012479999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+... +..+..+|+++...... ..+|....++.
T Consensus 435 ~~l~r~~~---------------~~~g~~~V~v~~~~r~~---------------------------~~~~~~~~e~~-- 470 (604)
T PRK13984 435 RSMARLQK---------------MEYGEVNVKVTSLERTF---------------------------EEMPADMEEIE-- 470 (604)
T ss_pred HHHHhccc---------------cccCceEEEEeccccCc---------------------------ccCCCCHHHHH--
Confidence 99985100 01134567776432110 00222221111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec-cCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV-GTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~-~~g~~~~i~ 334 (415)
+.+ ++||+++++..++++. . +++.+.++++.......+.+|..... .++++++++
T Consensus 471 -------~~~--------------~~GV~i~~~~~~~~i~--~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~ 526 (604)
T PRK13984 471 -------EGL--------------EEGVVIYPGWGPMEVV--I-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVE 526 (604)
T ss_pred -------HHH--------------HcCCEEEeCCCCEEEE--c-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEE
Confidence 111 5689999999999986 4 46778888776543333334543222 245667899
Q ss_pred cCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~~ 414 (415)
+|.||+|+|++|+. ..+.-....++.. ++|.+.+|++ ++|++|||||+||++.++. ++ .|+.+|+.||.+|++.
T Consensus 527 aD~Vi~aiG~~p~~-~~l~~~~~~~l~~-~~G~i~vd~~--~~Ts~~gVfAaGD~~~~~~-~v-~Ai~~G~~AA~~I~~~ 600 (604)
T PRK13984 527 ADMVVEAIGQAPDY-SYLPEELKSKLEF-VRGRILTNEY--GQTSIPWLFAGGDIVHGPD-II-HGVADGYWAAEGIDMY 600 (604)
T ss_pred CCEEEEeeCCCCCh-hhhhhhhccCccc-cCCeEEeCCC--CccCCCCEEEecCcCCchH-HH-HHHHHHHHHHHHHHHH
Confidence 99999999999965 1111000112333 3688999986 8999999999999997764 44 6999999999999864
No 21
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=9.7e-33 Score=286.38 Aligned_cols=307 Identities=24% Similarity=0.331 Sum_probs=229.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
....++|+|||+||+||++|..|++.| ++|++||+.+.+||++.+++ |.+..++++.....+.+.+.++++..++.+
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~ 210 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRV 210 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEE
Confidence 346789999999999999999999999 99999999999999999988 777777777776667777889998888776
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVA 175 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a 175 (415)
+.+++.......||+||+|||+.....+.++|.+..++.....++....... ....+++|+|||+|.++++++
T Consensus 211 ~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-------~~~~gk~v~ViGgg~~a~d~a 283 (564)
T PRK12771 211 GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-------PPFLGKRVVVIGGGNTAMDAA 283 (564)
T ss_pred CCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-------CcCCCCCEEEECChHHHHHHH
Confidence 5444443334479999999999666777899988888888877765432211 122589999999999999999
Q ss_pred HHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhch
Q 014990 176 RILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNS 255 (415)
Q Consensus 176 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (415)
..+.+ .+.+.++++.|.+... ++.....+.
T Consensus 284 ~~a~~--------------------lga~~v~ii~r~~~~~----------------------------~~~~~~~~~-- 313 (564)
T PRK12771 284 RTARR--------------------LGAEEVTIVYRRTRED----------------------------MPAHDEEIE-- 313 (564)
T ss_pred HHHHH--------------------cCCCEEEEEEecCccc----------------------------CCCCHHHHH--
Confidence 87775 5667899998875422 121111111
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-cCCCCCcceeccCCceEEEe
Q 014990 256 RIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-KGGGPGKQYAVGTGEFEDLD 334 (415)
Q Consensus 256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-~~~~~g~~~~~~~g~~~~i~ 334 (415)
+.. +.|++++++..+.++. . +++.+.++++..+.+ ..+.+|....+ .|+..+++
T Consensus 314 -------~a~--------------~~GVki~~~~~~~~i~--~-~~~~~~~v~~~~~~~~~~~~~g~~~~~-~g~~~~i~ 368 (564)
T PRK12771 314 -------EAL--------------REGVEINWLRTPVEIE--G-DENGATGLRVITVEKMELDEDGRPSPV-TGEEETLE 368 (564)
T ss_pred -------HHH--------------HcCCEEEecCCcEEEE--c-CCCCEEEEEEEEEEecccCCCCCeeec-CCceEEEE
Confidence 111 5689999999999997 4 333443666554433 22334543333 56667999
Q ss_pred cCeeEEeeccCCccCCCCcccC-CCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 335 CGMVLKSIGYKSVPVNGLPFDN-HKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 335 ~D~vi~atG~~p~~~~~~~~~~-~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|+||+|+|+.|+. .+.. ..++. +++|++.+|+.+ ++|++|||||+||+..++..+. .|+.||+.||.+|++
T Consensus 369 ~D~Vi~A~G~~p~~----~~~~~~~gl~-~~~G~i~vd~~~-~~ts~~~Vfa~GD~~~g~~~v~-~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 369 ADLVVLAIGQDIDS----AGLESVPGVE-VGRGVVQVDPNF-MMTGRPGVFAGGDMVPGPRTVT-TAIGHGKKAARNIDA 441 (564)
T ss_pred CCEEEECcCCCCch----hhhhhccCcc-cCCCCEEeCCCC-ccCCCCCEEeccCcCCCchHHH-HHHHHHHHHHHHHHH
Confidence 99999999999964 2333 24566 678999999865 8999999999999988777655 799999999999875
Q ss_pred c
Q 014990 414 I 414 (415)
Q Consensus 414 ~ 414 (415)
.
T Consensus 442 ~ 442 (564)
T PRK12771 442 F 442 (564)
T ss_pred H
Confidence 4
No 22
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6.8e-33 Score=269.17 Aligned_cols=306 Identities=17% Similarity=0.216 Sum_probs=213.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccccCCCCCCcchHHHHHHHHHHhhccC-eEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHPETKIVINQFSRVVQHER-CSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v 95 (415)
.+++|||||||++|+++|..|.+..++.+|+|||+.+++ .-.+.|....+.....++.-+++.+++..+ ++|+.+...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 578999999999999999999997435899999999864 334445554555566677778888888544 999988776
Q ss_pred c-----eEEEecc-cccccCEEEEccCCCCCCCCCCCCCC-----CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEE
Q 014990 96 G-----SSVSLSE-LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVI 164 (415)
Q Consensus 96 ~-----~~v~~~~-~~~~~d~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~V 164 (415)
. +.|++.+ ....||+||+|+|+ .+..+.+||+. .+.+..+.++..++....+..........-.+|+|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs-~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGS-ETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCC-cCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 3 3466666 44689999999999 67777999954 33444455544444311111000000012247999
Q ss_pred EcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc-CC---cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEG-SS---IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 165 VG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
||||++|+|+|.+|.+... +.++. .. .-+|+++.+.+.++..|.++
T Consensus 161 vGgG~TGVElAgeL~~~~~------------~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~------------------ 210 (405)
T COG1252 161 VGGGPTGVELAGELAERLH------------RLLKKFRVDPSELRVILVEAGPRILPMFPPK------------------ 210 (405)
T ss_pred ECCChhHHHHHHHHHHHHH------------HHhhhhcCCccccEEEEEccCchhccCCCHH------------------
Confidence 9999999999999996221 11111 11 12799999988764443331
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
++....+.|. +.||++++++.++++. . + ++++.+
T Consensus 211 ----------------l~~~a~~~L~-------------~~GV~v~l~~~Vt~v~--~--~----~v~~~~--------- 244 (405)
T COG1252 211 ----------------LSKYAERALE-------------KLGVEVLLGTPVTEVT--P--D----GVTLKD--------- 244 (405)
T ss_pred ----------------HHHHHHHHHH-------------HCCCEEEcCCceEEEC--C--C----cEEEcc---------
Confidence 1222233333 7799999999999996 2 3 344332
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCC-CCccccCCCceeeccCCCCCcccCCeeeeeccccCC-----c
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH-KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP-----T 394 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~-~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~-----~ 394 (415)
|+. +|++|++|||+|.++++ +... .+...+..|++.|++++ ...++|+|||+|||+.-+ +
T Consensus 245 -------g~~-~I~~~tvvWaaGv~a~~-----~~~~l~~~e~dr~Grl~V~~~L-~~~~~~~IFa~GD~A~~~~~~p~P 310 (405)
T COG1252 245 -------GEE-EIPADTVVWAAGVRASP-----LLKDLSGLETDRRGRLVVNPTL-QVPGHPDIFAAGDCAAVIDPRPVP 310 (405)
T ss_pred -------CCe-eEecCEEEEcCCCcCCh-----hhhhcChhhhccCCCEEeCCCc-ccCCCCCeEEEeccccCCCCCCCC
Confidence 222 69999999999999976 3344 35666778999999987 888999999999998533 3
Q ss_pred cchhhhhhhHHHHHhhcccc
Q 014990 395 GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~~ 414 (415)
.....|+.||+.+|+||.+.
T Consensus 311 ~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 311 PTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 56668999999999999764
No 23
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=100.00 E-value=2.6e-32 Score=261.42 Aligned_cols=281 Identities=22% Similarity=0.299 Sum_probs=195.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCCc---chHHHHHHHHHHhhccCeEEEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDHP---ETKIVINQFSRVVQHERCSFFGN 92 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 92 (415)
++|+|||||+||+++|..|++.+ .+|+|||+.+ +||.+... ..|.+. ...++..++.+.++..+++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999999 9999999887 45543211 113332 33577788888888889988773
Q ss_pred eEece-------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCC---CCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 93 VTLGS-------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDL---IGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 93 ~~v~~-------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
..+.. .+...+. ...||+||+|||+ .++.|++||.+. ..+++.... .. ....+++
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~-~~~~~~i~g~~~~~~~~~~~~~~~----~~---------~~~~~~~ 143 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGA-SARKLGIPGEDEFLGRGVSYCATC----DG---------PFFKNKE 143 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCC-CcccCCCCChhhcCCccEEEeeec----Ch---------hhcCCCE
Confidence 33221 2222332 3579999999999 677788888641 222222110 00 1226789
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|++|+|+|..|.+ ..++|+++.|++.+. ..+
T Consensus 144 v~ViG~G~~~~e~a~~l~~---------------------~~~~V~~v~~~~~~~---~~~------------------- 180 (300)
T TIGR01292 144 VAVVGGGDSAIEEALYLTR---------------------IAKKVTLVHRRDKFR---AEK------------------- 180 (300)
T ss_pred EEEECCChHHHHHHHHHHh---------------------hcCEEEEEEeCcccC---cCH-------------------
Confidence 9999999999999999985 346899999976431 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce-eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR-ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
...+.+. +. +++++++..+.++. . ++.+..+++.+.
T Consensus 181 ------------------~~~~~l~-------------~~~gv~~~~~~~v~~i~--~--~~~~~~v~~~~~-------- 217 (300)
T TIGR01292 181 ------------------ILLDRLR-------------KNPNIEFLWNSTVKEIV--G--DNKVEGVKIKNT-------- 217 (300)
T ss_pred ------------------HHHHHHH-------------hCCCeEEEeccEEEEEE--c--cCcEEEEEEEec--------
Confidence 0111121 33 89999999998886 4 445555555431
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
.+++++++++|+||||+|++|+. .+.... +..+.+|++.+|++ +++++||||++|||+.........|
T Consensus 218 -----~~g~~~~i~~D~vi~a~G~~~~~----~~l~~~-~~~~~~g~i~v~~~--~~t~~~~vya~GD~~~~~~~~~~~A 285 (300)
T TIGR01292 218 -----VTGEEEELKVDGVFIAIGHEPNT----ELLKGL-LELDEGGYIVTDEG--MRTSVPGVFAAGDVRDKGYRQAVTA 285 (300)
T ss_pred -----CCCceEEEEccEEEEeeCCCCCh----HHHHHh-heecCCCcEEECCC--CccCCCCEEEeecccCcchhhhhhh
Confidence 14556689999999999999965 233333 45566799999987 7899999999999986233334479
Q ss_pred hhhHHHHHhhccccC
Q 014990 401 LYCAEETVSSLSLIS 415 (415)
Q Consensus 401 ~~~g~~~a~~i~~~~ 415 (415)
+.||+.||.+|.+.+
T Consensus 286 ~~~g~~aa~~i~~~~ 300 (300)
T TIGR01292 286 AGDGCIAALSAERYL 300 (300)
T ss_pred hhhHHHHHHHHHhhC
Confidence 999999999998753
No 24
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.7e-32 Score=275.40 Aligned_cols=289 Identities=17% Similarity=0.202 Sum_probs=200.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC---------------------------c
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH---------------------------P 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~---------------------------~ 69 (415)
+..++|+||||||||++||.+|++.| .+|+|||+....|.+...++.|.+ .
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLG--MKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 45689999999999999999999999 999999997554444444443321 1
Q ss_pred chHHHH-----------HHHHHHhhcc-CeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCee
Q 014990 70 ETKIVI-----------NQFSRVVQHE-RCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVH 134 (415)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~-~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~ 134 (415)
....+. ..+...+++. +++++.++.+ .+.++.+.....||+||||||+ .|+.|++||.+...++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs-~p~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGA-RAAIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCC-CCCCCCCCCCCcCceE
Confidence 111111 1233445555 8888887754 2234444344689999999999 7888899998766666
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+..++.. . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.+++.
T Consensus 160 ~~~~~~~----~---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~ 205 (463)
T PRK06370 160 TNETIFS----L---------DELPEHLVIIGGGYIGLEFAQMFRR--------------------FG-SEVTVIERGPR 205 (463)
T ss_pred cchHhhC----c---------cccCCEEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCC
Confidence 6544331 0 0147899999999999999999986 34 58999999865
Q ss_pred ccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccc
Q 014990 215 VQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSF 294 (415)
Q Consensus 215 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v 294 (415)
+...+ ..+ ..+.+.+.+. +.||+++++..+.++
T Consensus 206 ~l~~~-----------------------------~~~-----~~~~l~~~l~-------------~~GV~i~~~~~V~~i 238 (463)
T PRK06370 206 LLPRE-----------------------------DED-----VAAAVREILE-------------REGIDVRLNAECIRV 238 (463)
T ss_pred CCccc-----------------------------CHH-----HHHHHHHHHH-------------hCCCEEEeCCEEEEE
Confidence 42111 111 1111222222 568999999988888
Q ss_pred cccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC
Q 014990 295 LESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG 374 (415)
Q Consensus 295 ~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~ 374 (415)
. . .++.+ .+.+.. .+.+.++++|.||+|+|++|+.. .+. ....++.++++|++.+|+.
T Consensus 239 ~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~Vi~A~G~~pn~~-~l~-l~~~g~~~~~~G~i~vd~~- 296 (463)
T PRK06370 239 E--R-DGDGI-AVGLDC---------------NGGAPEITGSHILVAVGRVPNTD-DLG-LEAAGVETDARGYIKVDDQ- 296 (463)
T ss_pred E--E-cCCEE-EEEEEe---------------CCCceEEEeCEEEECcCCCcCCC-CcC-chhhCceECCCCcEeECcC-
Confidence 6 3 22221 232221 12334799999999999999762 121 2456788888999999987
Q ss_pred CCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+..+. ....|..||+.+|.||..
T Consensus 297 -l~t~~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 297 -LRTTNPGIYAAGDCNGRGA-FTHTAYNDARIVAANLLD 333 (463)
T ss_pred -CcCCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHhC
Confidence 7899999999999986544 455799999999999864
No 25
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.3e-31 Score=270.59 Aligned_cols=282 Identities=18% Similarity=0.221 Sum_probs=193.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc---------------------------c
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP---------------------------E 70 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~---------------------------~ 70 (415)
.++|+||||||||++||..+++.| .+|+|||+.. +||. ...++.|.+. .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHG--AKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 589999999999999999999999 9999999864 5663 3444434320 1
Q ss_pred hHH-----------HHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCC-CCCCCCCCCeee
Q 014990 71 TKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRAL-GIPGEDLIGVHS 135 (415)
Q Consensus 71 ~~~-----------~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~-~i~g~~~~~v~~ 135 (415)
... +...+...++..+++++.+... ...+..+.....||+||||||+ .|+.| ++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs-~p~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGG-KPSFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCCCce--eEc
Confidence 111 1112344556678888887664 2223333334689999999999 67777 7888642 122
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.++.. . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 156 ~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~~i 201 (450)
T TIGR01421 156 SDGFFA----L---------EELPKRVVIVGAGYIAVELAGVLHG--------------------LG-SETHLVIRHERV 201 (450)
T ss_pred HHHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCCC
Confidence 222221 0 0136899999999999999999986 34 589999998754
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+ ++++. ..+.+.+. ++||+++++..+.++.
T Consensus 202 l~~~-d~~~~---------------------------------~~~~~~l~-------------~~gI~i~~~~~v~~i~ 234 (450)
T TIGR01421 202 LRSF-DSMIS---------------------------------ETITEEYE-------------KEGINVHKLSKPVKVE 234 (450)
T ss_pred Cccc-CHHHH---------------------------------HHHHHHHH-------------HcCCEEEcCCEEEEEE
Confidence 3222 22221 11222222 6689999999888886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. ..+....+.++ .++ +.++||.||||+|++|+.. .+ .....++.++++|++.+|++
T Consensus 235 --~-~~~~~~~v~~~----------------~g~-~~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T TIGR01421 235 --K-TVEGKLVIHFE----------------DGK-SIDDVDELIWAIGRKPNTK-GL-GLENVGIKLNEKGQIIVDEY-- 290 (450)
T ss_pred --E-eCCceEEEEEC----------------CCc-EEEEcCEEEEeeCCCcCcc-cC-CccccCcEECCCCcEEeCCC--
Confidence 3 22221123221 221 3799999999999999761 11 23566788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
++|+.|||||+|||+..+. ....|++||+.+|.+|.
T Consensus 291 ~~T~~p~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~ 326 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVE-LTPVAIAAGRKLSERLF 326 (450)
T ss_pred CcCCCCCEEEEEecCCCcc-cHHHHHHHHHHHHHHHh
Confidence 8899999999999986544 45589999999999986
No 26
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=277.15 Aligned_cols=323 Identities=25% Similarity=0.363 Sum_probs=252.3
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+.++|+|||+||||+++|..|.+.| ++|+++|+.+..||++.|++ |.+..++++.+...++++..|++|+.++.+
T Consensus 120 ~~tg~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 120 SRTGKKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred CCCCCEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceE
Confidence 456799999999999999999999999 99999999999999999998 888899999999999999999999999999
Q ss_pred ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCC-CC-CCCCCCCCCeEEEEcCChhHHH
Q 014990 96 GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDG-KN-LSPDLKSTDTAVILGQGNVALD 173 (415)
Q Consensus 96 ~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~-~~~~~~~~k~V~VVG~G~sg~e 173 (415)
+++++.+++...||+|++|||+..++..++||.++++++.+.+|+...+..... .. .......+|+|+|||+|.+++|
T Consensus 197 G~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D 276 (457)
T COG0493 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMD 276 (457)
T ss_pred CCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHH
Confidence 999999998888999999999988999999999999999999999877532111 11 1223336699999999999999
Q ss_pred HHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhh
Q 014990 174 VARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMK 253 (415)
Q Consensus 174 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (415)
|+....+ +|+++|+.+.+...-. + ..
T Consensus 277 ~~~t~~r--------------------~Ga~~v~~~~~~~~~~------------------------~---~~------- 302 (457)
T COG0493 277 CAGTALR--------------------LGAKSVTCFYREDRDD------------------------E---TN------- 302 (457)
T ss_pred HHHHHhh--------------------cCCeEEEEeccccccc------------------------c---CC-------
Confidence 9987775 6899999886442210 0 00
Q ss_pred chHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC--cceecc-CCce
Q 014990 254 NSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG--KQYAVG-TGEF 330 (415)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g--~~~~~~-~g~~ 330 (415)
+|+.+.....+ .+...+|+.+.+...+.+++ .+++|++..+.+..+.+.....+ ....++ .|+.
T Consensus 303 -~~~~~~~~~~~----------~~a~eeg~~~~~~~~~~~~~--~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~ 369 (457)
T COG0493 303 -EWPTWAAQLEV----------RSAGEEGVERLPFVQPKAFI--GNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTE 369 (457)
T ss_pred -cccccchhhhh----------hhhhhcCCcccccCCceeEe--ecCCCcEeeeecccccccCcccccccccCccccCce
Confidence 11111000011 11226789999999999998 53578899888877655432122 222332 5777
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSS 410 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~ 410 (415)
..+++|+|+.|+|+.++..... + ...++..+..|++.++... .+|+.|++||.||+.++.+.++ .|+.+|+.+|+.
T Consensus 370 ~~~~aD~v~~aig~~~~~~~~~-~-~~~~~~~~~~g~i~~~~~~-~~ts~~~vfa~gD~~~g~~~vv-~ai~eGr~aak~ 445 (457)
T COG0493 370 KTDAADTVILAIGFEGDATDGL-L-LEFGLKLDKRGRIKVDENL-QQTSIPGVFAGGDAVRGAALVV-WAIAEGREAAKA 445 (457)
T ss_pred EEehHHHHHHHhccCCCccccc-c-cccccccCCCCceeccccc-ccccCCCeeeCceeccchhhhh-hHHhhchHHHHh
Confidence 8999999999999998652211 1 1225677888999999873 3899999999999998887777 699999999999
Q ss_pred cc
Q 014990 411 LS 412 (415)
Q Consensus 411 i~ 412 (415)
|+
T Consensus 446 i~ 447 (457)
T COG0493 446 ID 447 (457)
T ss_pred hh
Confidence 87
No 27
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.8e-31 Score=265.43 Aligned_cols=287 Identities=19% Similarity=0.297 Sum_probs=206.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcc--------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPE-------------------------- 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~-------------------------- 70 (415)
..++++|||+||||..+|.++++.| .+|.|+|+...+|| ++.+|+.|.+..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~i 80 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCc
Confidence 5789999999999999999999999 77999999965565 344454443211
Q ss_pred -hHHHHH-----------HHHHHhhccCeEEEeceEe---ceEEEecc---cccccCEEEEccCCCCCCCCCCCCCCCCC
Q 014990 71 -TKIVIN-----------QFSRVVQHERCSFFGNVTL---GSSVSLSE---LRQLYHVVVLAYGAESDRALGIPGEDLIG 132 (415)
Q Consensus 71 -~~~~~~-----------~~~~~~~~~~~~~~~~~~v---~~~v~~~~---~~~~~d~lvlAtG~~~~~~~~i~g~~~~~ 132 (415)
.+++.. ....+++..+++++.+... ...+.+.. ....+|++|||||+ .|+.|+++|.+...
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS-~p~~~~~~~~~~~~ 159 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGS-RPRIPPGPGIDGAR 159 (454)
T ss_pred CHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCC-CCcCCCCCCCCCCe
Confidence 111111 2344555667887776543 23444444 34589999999999 78888999988766
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+.+..+.+.. ..-+++++|||+|.+|+|+|..+.+ +|. +||++.|+
T Consensus 160 ~~~s~~~l~~-------------~~lP~~lvIiGgG~IGlE~a~~~~~--------------------LG~-~VTiie~~ 205 (454)
T COG1249 160 ILDSSDALFL-------------LELPKSLVIVGGGYIGLEFASVFAA--------------------LGS-KVTVVERG 205 (454)
T ss_pred EEechhhccc-------------ccCCCEEEEECCCHHHHHHHHHHHH--------------------cCC-cEEEEecC
Confidence 7766553321 1258999999999999999999986 564 89999999
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+. |..+.++. +.+.+.+. +.++.++++..+.
T Consensus 206 ~~iL-----------------------------p~~D~ei~---------~~~~~~l~---------~~gv~i~~~~~v~ 238 (454)
T COG1249 206 DRIL-----------------------------PGEDPEIS---------KELTKQLE---------KGGVKILLNTKVT 238 (454)
T ss_pred CCCC-----------------------------CcCCHHHH---------HHHHHHHH---------hCCeEEEccceEE
Confidence 8763 33333332 12222221 4579999999888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . .++. ..+++.+ ++..++++|.|++|+|.+||. .++.+ +..|+.++++|++.||
T Consensus 239 ~~~--~-~~~~-v~v~~~~----------------g~~~~~~ad~vLvAiGR~Pn~-~~LgL-e~~Gv~~~~rg~I~VD- 295 (454)
T COG1249 239 AVE--K-KDDG-VLVTLED----------------GEGGTIEADAVLVAIGRKPNT-DGLGL-ENAGVELDDRGFIKVD- 295 (454)
T ss_pred EEE--e-cCCe-EEEEEec----------------CCCCEEEeeEEEEccCCccCC-CCCCh-hhcCceECCCCCEEeC-
Confidence 886 3 2222 2343332 222279999999999999976 44444 5779999999999999
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+. ++|++|||||+|||..++. +...|++||+.||.+|..
T Consensus 296 ~~-~~Tnvp~IyA~GDV~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 296 DQ-MTTNVPGIYAIGDVIGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred Cc-cccCCCCEEEeeccCCCcc-cHhHHHHHHHHHHHHHhC
Confidence 44 8888999999999987666 777999999999999874
No 28
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.1e-31 Score=270.69 Aligned_cols=286 Identities=19% Similarity=0.244 Sum_probs=196.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc-------------------------ch---
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-------------------------ET--- 71 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~-------------------------~~--- 71 (415)
++|+||||||||+++|.++++.| .+|+|||+...-|.++..++.|.+. ..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELG--ASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 58999999999999999999999 9999999987433334444333211 01
Q ss_pred ----HHHHHH-----HHHHhhccCeEEEeceEe---ceEEEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCeeech
Q 014990 72 ----KIVINQ-----FSRVVQHERCSFFGNVTL---GSSVSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR 137 (415)
Q Consensus 72 ----~~~~~~-----~~~~~~~~~~~~~~~~~v---~~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~ 137 (415)
+++... +...++..+++++.+... .+.+...+. ...||+||||||+ .|+.|++||.+..++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs-~p~~p~i~G~~~~~~~~~~ 157 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGA-RPAIPPIPGLKEAGYLTSE 157 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCC-CCCCCCCCCcccCceECch
Confidence 111111 234566778888877654 233444442 3479999999999 7888899998765555544
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccC
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQA 217 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~ 217 (415)
++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+..
T Consensus 158 ~~~~----~---------~~~~~~vvIIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 158 EALA----L---------DRIPESLAVIGGGAIGVELAQAFAR--------------------LG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhC----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcCCcCCC
Confidence 3321 0 0135899999999999999999986 34 58999999865421
Q ss_pred CCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccccc
Q 014990 218 ACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLES 297 (415)
Q Consensus 218 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~ 297 (415)
.+ ++ + +...+.+.+. ..||+++++..+.++.
T Consensus 204 ~~-d~----------------------------~-----~~~~l~~~l~-------------~~gV~i~~~~~V~~i~-- 234 (463)
T TIGR02053 204 RE-EP----------------------------E-----ISAAVEEALA-------------EEGIEVVTSAQVKAVS-- 234 (463)
T ss_pred cc-CH----------------------------H-----HHHHHHHHHH-------------HcCCEEEcCcEEEEEE--
Confidence 11 11 1 1111222222 5689999999888886
Q ss_pred CCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCC
Q 014990 298 NERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSS 377 (415)
Q Consensus 298 ~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~ 377 (415)
. ++....+.+.. .++++++++|.||+|+|++|+. ..+. ....++.++++|++.+|++ ++
T Consensus 235 ~--~~~~~~v~~~~---------------~~~~~~i~~D~ViiA~G~~p~~-~~l~-l~~~g~~~~~~G~i~vd~~--~~ 293 (463)
T TIGR02053 235 V--RGGGKIITVEK---------------PGGQGEVEADELLVATGRRPNT-DGLG-LEKAGVKLDERGGILVDET--LR 293 (463)
T ss_pred E--cCCEEEEEEEe---------------CCCceEEEeCEEEEeECCCcCC-CCCC-ccccCCEECCCCcEeECCC--cc
Confidence 3 32222233221 2233579999999999999976 2121 3556778888999999986 88
Q ss_pred cccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 378 QVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 378 t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 294 Ts~~~VyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 328 (463)
T TIGR02053 294 TSNPGIYAAGDVTGGLQ-LEYVAAKEGVVAAENALG 328 (463)
T ss_pred CCCCCEEEeeecCCCcc-cHhHHHHHHHHHHHHhcC
Confidence 99999999999986544 455899999999999864
No 29
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=2.3e-31 Score=257.92 Aligned_cols=289 Identities=18% Similarity=0.209 Sum_probs=192.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC----CCCC---cchHHHHHHHHHHhhccCeEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV----APDH---PETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~ 89 (415)
.+.++|+||||||||++||..|++++ .++++||.. ..||.+.... .|.. ....++.+++.+....++.++
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
Confidence 46889999999999999999999999 999999954 4555432211 1221 123345667777777666666
Q ss_pred EeceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCC
Q 014990 90 FGNVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKST 159 (415)
Q Consensus 90 ~~~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (415)
..+..... .++.+.....||+||+|||+ .|+.|++||.+ ...++++. ..... ...+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~-~~~~~~i~g~~~~~~~~v~~~~-~~~~~------------~~~g 146 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGA-SARYLGLPSEEAFKGRGVSACA-TCDGF------------FYRN 146 (321)
T ss_pred EeeEEEEEEecCCeEEEEecCCEEEECEEEECCCC-CCCCCCCCCHHHcCCCcEEEee-cCCHH------------HcCC
Confidence 55432111 12222234579999999999 57888999854 22333321 11110 1268
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRE 239 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 239 (415)
++|+|||+|.+|+|+|..|.+ ..++|+++.|++.+.. ..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~---------------------~~~~Vtlv~~~~~~~~---~~----------------- 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSN---------------------IASEVHLIHRRDGFRA---EK----------------- 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHh---------------------hCCEEEEEEECCccCC---CH-----------------
Confidence 999999999999999999986 3468999999864310 00
Q ss_pred cccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCC
Q 014990 240 DDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGP 319 (415)
Q Consensus 240 ~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~ 319 (415)
.+++.+.+.+ .+.+|+++++..++++. . +++.+..+++.+..
T Consensus 186 ----------------~~~~~~~~~l-------------~~~gV~i~~~~~v~~v~--~-~~~~~~~v~~~~~~------ 227 (321)
T PRK10262 186 ----------------ILIKRLMDKV-------------ENGNIILHTNRTLEEVT--G-DQMGVTGVRLRDTQ------ 227 (321)
T ss_pred ----------------HHHHHHHhhc-------------cCCCeEEEeCCEEEEEE--c-CCccEEEEEEEEcC------
Confidence 0111121222 26789999999999987 4 33456666665321
Q ss_pred CcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC---CCCcccCCeeeeeccccCC-cc
Q 014990 320 GKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG---DSSQVENGLYVCGWLKRGP-TG 395 (415)
Q Consensus 320 g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~---~~~t~~p~vfaiGD~~~~~-~~ 395 (415)
..++.+++++|.|||++|++|+. .+... ++.+ ++|++.+|+.. .++|++|||||+|||+..+ ..
T Consensus 228 ------~~~~~~~i~~D~vv~a~G~~p~~----~l~~~-~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~ 295 (321)
T PRK10262 228 ------NSDNIESLDVAGLFVAIGHSPNT----AIFEG-QLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQ 295 (321)
T ss_pred ------CCCeEEEEECCEEEEEeCCccCh----hHhhc-cccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcce
Confidence 02344689999999999999976 22221 3434 35889888621 1789999999999998644 34
Q ss_pred chhhhhhhHHHHHhhcccc
Q 014990 396 IIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 396 ~~~~a~~~g~~~a~~i~~~ 414 (415)
++ .|+.+|..||..|++.
T Consensus 296 ~~-~A~~~g~~Aa~~~~~~ 313 (321)
T PRK10262 296 AI-TSAGTGCMAALDAERY 313 (321)
T ss_pred EE-EEehhHHHHHHHHHHH
Confidence 44 6999999999988764
No 30
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-31 Score=252.42 Aligned_cols=280 Identities=23% Similarity=0.244 Sum_probs=204.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC----CCCCC---cchHHHHHHHHHHhhccCeEEE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG----VAPDH---PETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
+.++|+|||||||||+||.++.|.+ .+++||+....+||++... -.|++ ....++.+.+.++...+++++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~ 79 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIV 79 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEE
Confidence 5689999999999999999999999 9955555555566554322 11332 2345777788888888888877
Q ss_pred eceEec-------eEEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 91 GNVTLG-------SSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 91 ~~~~v~-------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
...... +.+++++....+++||||||+ .++.|.+||.. ..+++++.. +. + ...+|
T Consensus 80 ~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~-~~~~~~~~~e~e~~g~gv~yc~~-cd---g----------~~~~k 144 (305)
T COG0492 80 EDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGA-GARKLGVPGEEEFEGKGVSYCAT-CD---G----------FFKGK 144 (305)
T ss_pred EEEEEEEeecCceEEEEECCCeEEEeEEEECcCC-cccCCCCCcchhhcCCceEEeee-cC---c----------cccCC
Confidence 643321 234444555678999999999 78888887643 335555432 11 1 22689
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++++|-|..|.+ -+++|++++|++.+.. .+.+.++
T Consensus 145 ~v~ViGgG~sAve~Al~L~~---------------------~a~~Vtlv~r~~~~ra---~~~~~~~------------- 187 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSK---------------------IAKKVTLVHRRDEFRA---EEILVER------------- 187 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHH---------------------hcCeEEEEecCcccCc---CHHHHHH-------------
Confidence 99999999999999999996 4468999999986532 1111111
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
+.. ..++.++++..+.++. + ++ +.++++.+.
T Consensus 188 ------------------------l~~------------~~~i~~~~~~~i~ei~--G--~~-v~~v~l~~~-------- 218 (305)
T COG0492 188 ------------------------LKK------------NVKIEVLTNTVVKEIL--G--DD-VEGVVLKNV-------- 218 (305)
T ss_pred ------------------------HHh------------cCCeEEEeCCceeEEe--c--Cc-cceEEEEec--------
Confidence 111 2279999999999998 5 44 778888763
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
.++..++++|-++.++|+.|++ .|....+. ++++|++.+++. ++||+|||||+||+...+...+..|
T Consensus 219 ------~~~~~~~~~~gvf~~iG~~p~~----~~~~~~~~-~~~~g~I~v~~~--~~TsvpGifAaGDv~~~~~rqi~ta 285 (305)
T COG0492 219 ------KGEEKELPVDGVFIAIGHLPNT----ELLKGLGV-LDENGYIVVDEE--METSVPGIFAAGDVADKNGRQIATA 285 (305)
T ss_pred ------CCceEEEEeceEEEecCCCCch----HHHhhccc-cCCCCcEEcCCC--cccCCCCEEEeEeeccCcccEEeeh
Confidence 2566689999999999999976 34444454 788999999998 8999999999999987665444489
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
..+|..||.++.+
T Consensus 286 ~~~G~~Aa~~a~~ 298 (305)
T COG0492 286 AGDGAIAALSAER 298 (305)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999987754
No 31
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.5e-31 Score=266.17 Aligned_cols=287 Identities=15% Similarity=0.189 Sum_probs=191.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcc--------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPE-------------------------- 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~-------------------------- 70 (415)
..++|+||||||||+++|..|++.| .+|+|||+.+.+|| +...++.|.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 4689999999999999999999999 99999999877777 334444343210
Q ss_pred hHHHHHH-----------HHHHhhccCeEEEeceEe---ceE--EEeccc---ccccCEEEEccCCCCCC-CCCCCCCCC
Q 014990 71 TKIVINQ-----------FSRVVQHERCSFFGNVTL---GSS--VSLSEL---RQLYHVVVLAYGAESDR-ALGIPGEDL 130 (415)
Q Consensus 71 ~~~~~~~-----------~~~~~~~~~~~~~~~~~v---~~~--v~~~~~---~~~~d~lvlAtG~~~~~-~~~i~g~~~ 130 (415)
...+... ....++..+++++.+... ... ++..++ ...||+||||||+ .|+ +|.+++ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~p~~~~-~~ 158 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGS-RPIQLPFIPH-DD 158 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCC-CCCCCCCCCC-CC
Confidence 1111111 123445668988877643 112 322232 3589999999999 565 444554 33
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
+++++..+... + ...+++|+|||+|++|+|+|..+.+ .+ .+|+++.
T Consensus 159 ~~v~~~~~~~~-~------------~~~~~~vvIiGgG~iG~E~A~~l~~--------------------~G-~~Vtlv~ 204 (471)
T PRK06467 159 PRIWDSTDALE-L------------KEVPKRLLVMGGGIIGLEMGTVYHR--------------------LG-SEVDVVE 204 (471)
T ss_pred CcEEChHHhhc-c------------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CCEEEEe
Confidence 44554433321 0 0146899999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
+.+.+...+ ++++ +..+.+.+. ++ ++++++..
T Consensus 205 ~~~~il~~~-d~~~---------------------------------~~~~~~~l~-------------~~-v~i~~~~~ 236 (471)
T PRK06467 205 MFDQVIPAA-DKDI---------------------------------VKVFTKRIK-------------KQ-FNIMLETK 236 (471)
T ss_pred cCCCCCCcC-CHHH---------------------------------HHHHHHHHh-------------hc-eEEEcCCE
Confidence 887543221 1111 111112221 34 88888888
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . .++.+ .+++.+. .++.+++++|.|||++|++|+. ..+ .....++.++++|++.+
T Consensus 237 v~~i~--~-~~~~~-~v~~~~~--------------~~~~~~i~~D~vi~a~G~~pn~-~~l-~~~~~gl~~~~~G~I~V 296 (471)
T PRK06467 237 VTAVE--A-KEDGI-YVTMEGK--------------KAPAEPQRYDAVLVAVGRVPNG-KLL-DAEKAGVEVDERGFIRV 296 (471)
T ss_pred EEEEE--E-cCCEE-EEEEEeC--------------CCcceEEEeCEEEEeecccccC-Ccc-ChhhcCceECCCCcEee
Confidence 88775 3 22222 2333210 2334579999999999999976 211 22456788888999999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 297 d~~--~~t~~p~VyAiGDv~~~~~-la~~A~~eG~~aa~~i~g 336 (471)
T PRK06467 297 DKQ--CRTNVPHIFAIGDIVGQPM-LAHKGVHEGHVAAEVIAG 336 (471)
T ss_pred CCC--cccCCCCEEEehhhcCCcc-cHHHHHHHHHHHHHHHcC
Confidence 987 7899999999999986554 455799999999999864
No 32
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=8.3e-31 Score=265.39 Aligned_cols=283 Identities=16% Similarity=0.232 Sum_probs=192.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc---------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~--------------------------- 69 (415)
..++|+||||||||++||..|++.| .+|+|||+. .+||. ...++.|.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 4589999999999999999999999 999999986 56653 2333223210
Q ss_pred chHH-----------HHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 70 ETKI-----------VINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 70 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
.... +.+.+.+.++..+++++.+... ...++++.....||+||||||+ .|+.|++||.+ .+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs-~p~~p~i~g~~--~~~~ 156 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGG-RPSIPDIPGAE--YGIT 156 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCC-CCCCCCCCCcc--eeEc
Confidence 0011 1122334455678888877643 1234443334589999999999 67888898864 2333
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.++.. . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 157 ~~~~~~----~---------~~~~~~vvViGgG~~g~E~A~~l~~--------------------~g-~~Vtlv~~~~~~ 202 (450)
T PRK06116 157 SDGFFA----L---------EELPKRVAVVGAGYIAVEFAGVLNG--------------------LG-SETHLFVRGDAP 202 (450)
T ss_pred hhHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCCC
Confidence 332221 0 1146899999999999999999985 34 589999988653
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+. ++ +...+.+.+. +.||+++++..+.++.
T Consensus 203 l~~~~-~~---------------------------------~~~~l~~~L~-------------~~GV~i~~~~~V~~i~ 235 (450)
T PRK06116 203 LRGFD-PD---------------------------------IRETLVEEME-------------KKGIRLHTNAVPKAVE 235 (450)
T ss_pred ccccC-HH---------------------------------HHHHHHHHHH-------------HCCcEEECCCEEEEEE
Confidence 21111 11 1111222222 6689999999998886
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++....+++. +| +++++|.||+|+|++|+. ..+ .....++.++++|++.+|++
T Consensus 236 --~-~~~g~~~v~~~----------------~g--~~i~~D~Vv~a~G~~p~~-~~l-~l~~~g~~~~~~G~i~vd~~-- 290 (450)
T PRK06116 236 --K-NADGSLTLTLE----------------DG--ETLTVDCLIWAIGREPNT-DGL-GLENAGVKLNEKGYIIVDEY-- 290 (450)
T ss_pred --E-cCCceEEEEEc----------------CC--cEEEeCEEEEeeCCCcCC-CCC-CchhcCceECCCCcEecCCC--
Confidence 3 22221122221 22 369999999999999975 212 13456788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|++|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 291 ~~Ts~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGRVE-LTPVAIAAGRRLSERLFN 327 (450)
T ss_pred CCcCCCCEEEEeecCCCcC-cHHHHHHHHHHHHHHHhC
Confidence 7899999999999986544 455899999999999864
No 33
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=4.9e-31 Score=270.64 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=200.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--C--CCC--CcchHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--V--APD--HPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
...++|+||||||||++||.+|++.| .+|+||++ .+||.+... + .+. +....++.+.+.+.++.+++.++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 45789999999999999999999999 99999975 466655311 1 011 12344667778888888889988
Q ss_pred eceEec--------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 91 GNVTLG--------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 91 ~~~~v~--------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.++.+. ..+...++ ...||+||+|||+ .++.|++||.+ ..+++..... .. ....
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa-~~~~~~ipG~~~~~~~~v~~~~~~----~~---------~~~~ 351 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGA-RWRKLGVPGEKEYIGKGVAYCPHC----DG---------PFFK 351 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCC-CcCCCCCCCHHHcCCCeEEEeecc----Ch---------hhcC
Confidence 776542 12333333 3579999999999 57888899853 2233322110 00 1226
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.+ ..++|+++.+.+.+.. .
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~---------------------~g~~Vtli~~~~~l~~---~----------------- 390 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAG---------------------IVRHVTVLEFADELKA---D----------------- 390 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHh---------------------cCcEEEEEEeCCcCCh---h-----------------
Confidence 8999999999999999999985 3468999987754210 0
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
+.+.+.+. ...||+++++..+.++. . +++.+.++.+.+..
T Consensus 391 --------------------~~l~~~l~------------~~~gV~i~~~~~v~~i~--~-~~~~v~~v~~~~~~----- 430 (515)
T TIGR03140 391 --------------------KVLQDKLK------------SLPNVDILTSAQTTEIV--G-DGDKVTGIRYQDRN----- 430 (515)
T ss_pred --------------------HHHHHHHh------------cCCCCEEEECCeeEEEE--c-CCCEEEEEEEEECC-----
Confidence 00111111 03589999999999987 4 34666667665421
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
+++.++++||.|++++|++|++ .+.... +.++++|++.+|++ ++|++|||||+|||+..+.+...
T Consensus 431 --------~~~~~~i~~D~vi~a~G~~Pn~----~~l~~~-~~~~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~~~~ 495 (515)
T TIGR03140 431 --------SGEEKQLDLDGVFVQIGLVPNT----EWLKDA-VELNRRGEIVIDER--GRTSVPGIFAAGDVTTVPYKQII 495 (515)
T ss_pred --------CCcEEEEEcCEEEEEeCCcCCc----hHHhhh-cccCCCCeEEECCC--CCCCCCCEEEcccccCCccceEE
Confidence 3455689999999999999976 333333 56677899999997 78999999999999876654444
Q ss_pred hhhhhHHHHHhhcccc
Q 014990 399 TNLYCAEETVSSLSLI 414 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~~ 414 (415)
.|+.+|..||.+|.+.
T Consensus 496 ~A~~~G~~Aa~~i~~~ 511 (515)
T TIGR03140 496 IAMGEGAKAALSAFDY 511 (515)
T ss_pred EEEccHHHHHHHHHHH
Confidence 7999999999988753
No 34
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=3.7e-31 Score=267.70 Aligned_cols=290 Identities=13% Similarity=0.134 Sum_probs=195.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc---cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL---VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|||||||+||+++|..|++.+++.+|+|||+++.++.. +.+.....+....++.....+.++..++++..+..+.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 4799999999999999999998877899999999875411 1111101112233334444455666788887765442
Q ss_pred ------eEEEecc---c-cc--ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCeE
Q 014990 97 ------SSVSLSE---L-RQ--LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTA 162 (415)
Q Consensus 97 ------~~v~~~~---~-~~--~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~V 162 (415)
+.+.+.+ . .. .||+||||||+ .|+.|++||.+.+++++...+... +.... . -..+++|
T Consensus 81 ~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~-~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l------~-~~~~~~v 152 (444)
T PRK09564 81 KVDAKNKTITVKNLKTGSIFNDTYDKLMIATGA-RPIIPPIKNINLENVYTLKSMEDGLALKELL------K-DEEIKNI 152 (444)
T ss_pred EEECCCCEEEEEECCCCCEEEecCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHH------h-hcCCCEE
Confidence 2333322 2 23 49999999999 677788999887777765443221 11100 0 0147899
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccccc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDL 242 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (415)
+|||+|.+|+|+|..+.+ .+ .+|+++.+++.+.....++++
T Consensus 153 vVvGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~~~~~~------------------ 193 (444)
T PRK09564 153 VIIGAGFIGLEAVEAAKH--------------------LG-KNVRIIQLEDRILPDSFDKEI------------------ 193 (444)
T ss_pred EEECCCHHHHHHHHHHHh--------------------cC-CcEEEEeCCcccCchhcCHHH------------------
Confidence 999999999999999885 33 589999887643211111111
Q ss_pred CCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcc
Q 014990 243 IKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQ 322 (415)
Q Consensus 243 ~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~ 322 (415)
...+.+.+. +.||+++++..+.++. . ++.+..+..
T Consensus 194 ---------------~~~l~~~l~-------------~~gI~v~~~~~v~~i~--~--~~~~~~v~~------------- 228 (444)
T PRK09564 194 ---------------TDVMEEELR-------------ENGVELHLNEFVKSLI--G--EDKVEGVVT------------- 228 (444)
T ss_pred ---------------HHHHHHHHH-------------HCCCEEEcCCEEEEEe--c--CCcEEEEEe-------------
Confidence 112222222 5689999999888885 3 443322221
Q ss_pred eeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---------
Q 014990 323 YAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP--------- 393 (415)
Q Consensus 323 ~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~--------- 393 (415)
.+. +++||.+|+|+|++|+. ++....|+.++++|++.+|++ ++|++|||||+|||+..+
T Consensus 229 ----~~~--~i~~d~vi~a~G~~p~~----~~l~~~gl~~~~~g~i~vd~~--~~t~~~~IyA~GD~~~~~~~~~~~~~~ 296 (444)
T PRK09564 229 ----DKG--EYEADVVIVATGVKPNT----EFLEDTGLKTLKNGAIIVDEY--GETSIENIYAAGDCATIYNIVSNKNVY 296 (444)
T ss_pred ----CCC--EEEcCEEEECcCCCcCH----HHHHhcCccccCCCCEEECCC--cccCCCCEEEeeeEEEEEeccCCCeee
Confidence 111 59999999999999965 355667777777899999987 789999999999998531
Q ss_pred ccchhhhhhhHHHHHhhccc
Q 014990 394 TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ~~~~~~a~~~g~~~a~~i~~ 413 (415)
......|+.||+.+|.||..
T Consensus 297 ~~~~~~A~~qg~~~a~ni~g 316 (444)
T PRK09564 297 VPLATTANKLGRMVGENLAG 316 (444)
T ss_pred ccchHHHHHHHHHHHHHhcC
Confidence 22445799999999999864
No 35
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.98 E-value=1.2e-30 Score=263.60 Aligned_cols=281 Identities=17% Similarity=0.208 Sum_probs=190.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc----------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP---------------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~---------------------------- 69 (415)
.++|+||||||||++||..+++.| .+|+|||+. .+||.. ..++.|.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHG--AKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 589999999999999999999999 999999985 566643 334434321
Q ss_pred ---------chHHHHHHHHHHhhccCeEEEeceEe--c-eEEEe--cccccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 70 ---------ETKIVINQFSRVVQHERCSFFGNVTL--G-SSVSL--SELRQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~~~~~~~~~v--~-~~v~~--~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
....+...+...++..+++++.+... + ..+.. +.....||+||||||+ .|..|++||.+. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs-~p~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGG-RPQKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCC-cCCCCCCCCccc--eec
Confidence 00122234455666778888877542 1 12222 2223589999999999 678888998642 222
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+.+... . ...+++|+|||+|.+|+|+|..+.+ .+ .+|+++.+.+.+
T Consensus 156 ~~~~~~----l---------~~~~~~vvVIGgG~~g~E~A~~l~~--------------------~G-~~Vtli~~~~~~ 201 (446)
T TIGR01424 156 SNEAFH----L---------PTLPKSILILGGGYIAVEFAGIWRG--------------------LG-VQVTLIYRGELI 201 (446)
T ss_pred hHHhhc----c---------cccCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEEeCCCC
Confidence 222111 1 0147899999999999999999985 34 589999988654
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
...+. +++ +..+.+.+. +.|++++++..+.++.
T Consensus 202 l~~~d-~~~---------------------------------~~~l~~~l~-------------~~gV~i~~~~~v~~i~ 234 (446)
T TIGR01424 202 LRGFD-DDM---------------------------------RALLARNME-------------GRGIRIHPQTSLTSIT 234 (446)
T ss_pred CcccC-HHH---------------------------------HHHHHHHHH-------------HCCCEEEeCCEEEEEE
Confidence 22111 111 111222222 5689999998888885
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++.+ .+.+. ++ +++++|.||+|+|++|+. ..+ .....++.++++|++.+|++
T Consensus 235 --~-~~~~~-~v~~~----------------~g--~~i~~D~viva~G~~pn~-~~l-~l~~~g~~~~~~G~i~vd~~-- 288 (446)
T TIGR01424 235 --K-TDDGL-KVTLS----------------HG--EEIVADVVLFATGRSPNT-KGL-GLEAAGVELNDAGAIAVDEY-- 288 (446)
T ss_pred --E-cCCeE-EEEEc----------------CC--cEeecCEEEEeeCCCcCC-CcC-CccccCeEECCCCcEEeCCC--
Confidence 3 12221 22221 12 379999999999999975 212 12556788888899999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||+... .+...|++||+.+|.+|..
T Consensus 289 ~~Ts~~~IyA~GD~~~~~-~l~~~A~~~g~~~a~~i~~ 325 (446)
T TIGR01424 289 SRTSIPSIYAVGDVTDRI-NLTPVAIMEATCFANTEFG 325 (446)
T ss_pred CccCCCCEEEeeccCCCc-cchhHHHHHHHHHHHHHhc
Confidence 789999999999998644 4555899999999999863
No 36
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.98 E-value=2.6e-30 Score=262.64 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=196.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc--------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP-------------------------- 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~-------------------------- 69 (415)
+..++|+||||||||+++|.+|++.| .+|+|||+.+.+||.. ..+..|.+.
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRI 80 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCcc
Confidence 45689999999999999999999999 9999999987777754 333333211
Q ss_pred chHHHH-----------HHHHHHhhccCeEEEeceEe--c-e--EEEeccc---ccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 70 ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G-S--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 70 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~v--~-~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
...++. ..+...+++.+++++.+... + . .+...++ ...||+||||||+ .|+.|++++.+.
T Consensus 81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs-~p~~p~~~~~~~ 159 (461)
T PRK05249 81 TFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGS-RPYRPPDVDFDH 159 (461)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCCCC
Confidence 011111 12234455668888777542 1 1 2222222 3579999999999 677778777766
Q ss_pred CCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 131 IGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 131 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
+.++++.++.... ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 160 ~~v~~~~~~~~~~-------------~~~~~v~IiGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 205 (461)
T PRK05249 160 PRIYDSDSILSLD-------------HLPRSLIIYGAGVIGCEYASIFAA--------------------LG-VKVTLIN 205 (461)
T ss_pred CeEEcHHHhhchh-------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEe
Confidence 6677665443211 147999999999999999999986 34 5899999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
|++.+... .++++ ...+.+.+. +.|++++++..
T Consensus 206 ~~~~~l~~-~d~~~---------------------------------~~~l~~~l~-------------~~gI~v~~~~~ 238 (461)
T PRK05249 206 TRDRLLSF-LDDEI---------------------------------SDALSYHLR-------------DSGVTIRHNEE 238 (461)
T ss_pred cCCCcCCc-CCHHH---------------------------------HHHHHHHHH-------------HcCCEEEECCE
Confidence 98754321 11111 111222222 56899999988
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . .++.+ .+++. +| +++++|.||+|+|++|+.. .+ .....++.++++|++.+
T Consensus 239 v~~i~--~-~~~~~-~v~~~----------------~g--~~i~~D~vi~a~G~~p~~~-~l-~l~~~g~~~~~~G~i~v 294 (461)
T PRK05249 239 VEKVE--G-GDDGV-IVHLK----------------SG--KKIKADCLLYANGRTGNTD-GL-NLENAGLEADSRGQLKV 294 (461)
T ss_pred EEEEE--E-eCCeE-EEEEC----------------CC--CEEEeCEEEEeecCCcccc-CC-CchhhCcEecCCCcEee
Confidence 88886 3 22221 12211 22 2699999999999999761 11 23456788888899999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 295 d~~--~~t~~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 295 NEN--YQTAVPHIYAVGDVIGFPS-LASASMDQGRIAAQHAVG 334 (461)
T ss_pred CCC--cccCCCCEEEeeecCCCcc-cHhHHHHHHHHHHHHHcC
Confidence 987 8899999999999986554 455799999999999863
No 37
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.98 E-value=1.9e-30 Score=266.66 Aligned_cols=283 Identities=20% Similarity=0.237 Sum_probs=202.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc--CC--CCC--CcchHHHHHHHHHHhhccCeEEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS--GV--APD--HPETKIVINQFSRVVQHERCSFF 90 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~ 90 (415)
...++|+||||||||++||.+|++.| .+|+||++. +||.+.. .+ .+. +....++.+.+.+.++.+++++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKG--IRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 45789999999999999999999999 999999864 6665431 11 011 22445777888888888899888
Q ss_pred eceEece--------EEEeccc-ccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCC
Q 014990 91 GNVTLGS--------SVSLSEL-RQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 91 ~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (415)
.++.+.. .+...+. ...||+||+|||+ .++.|++||.+ ..++++... . . . ....
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~-~~r~~~ipG~~~~~~~~v~~~~~-~---~-~--------~~~~ 350 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA-RWRNMNVPGEDEYRNKGVAYCPH-C---D-G--------PLFK 350 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCC-CcCCCCCCCHHHhcCceEEEeec-c---C-c--------hhcC
Confidence 7765422 2222233 3479999999999 67888888863 223332211 0 0 0 1226
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|++|+|+|..|.. ..++|+++.+.+.... .+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~---------------------~~~~Vtlv~~~~~l~~---~~---------------- 390 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAG---------------------IVKHVTVLEFAPELKA---DQ---------------- 390 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------------------cCCEEEEEEECccccc---cH----------------
Confidence 8999999999999999999985 3479999988764210 00
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
. +.+.+. ...||+++++..+.++. . +++.+..+++.+..
T Consensus 391 -----------------~----l~~~l~------------~~~gI~i~~~~~v~~i~--~-~~g~v~~v~~~~~~----- 429 (517)
T PRK15317 391 -----------------V----LQDKLR------------SLPNVTIITNAQTTEVT--G-DGDKVTGLTYKDRT----- 429 (517)
T ss_pred -----------------H----HHHHHh------------cCCCcEEEECcEEEEEE--c-CCCcEEEEEEEECC-----
Confidence 0 011111 03589999999999997 4 34667777765421
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchh
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIA 398 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~ 398 (415)
+++.++++||.|+|++|++|+. .|.... +.++++|++.+|++ ++|++|||||+|||+..+.+.+.
T Consensus 430 --------~g~~~~i~~D~v~~~~G~~p~~----~~l~~~-v~~~~~g~i~vd~~--l~Ts~p~IyAaGDv~~~~~k~~~ 494 (517)
T PRK15317 430 --------TGEEHHLELEGVFVQIGLVPNT----EWLKGT-VELNRRGEIIVDAR--GATSVPGVFAAGDCTTVPYKQII 494 (517)
T ss_pred --------CCcEEEEEcCEEEEeECCccCc----hHHhhh-eeeCCCCcEEECcC--CCCCCCCEEECccccCCCCCEEE
Confidence 4555689999999999999976 343333 66777899999987 78999999999999876655455
Q ss_pred hhhhhHHHHHhhccc
Q 014990 399 TNLYCAEETVSSLSL 413 (415)
Q Consensus 399 ~a~~~g~~~a~~i~~ 413 (415)
.|+.+|..||.++..
T Consensus 495 ~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 495 IAMGEGAKAALSAFD 509 (517)
T ss_pred EhhhhHHHHHHHHHH
Confidence 899999999988754
No 38
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=6.1e-30 Score=259.99 Aligned_cols=284 Identities=19% Similarity=0.249 Sum_probs=189.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~--------------------------~ 70 (415)
..++|+||||||||++||..|++.| .+|+|||+.. +||. +..++.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 5689999999999999999999999 9999999987 6664 3444434321 1
Q ss_pred hHHHHH-----------HHHHHhhccCeEEEeceEec---eEEEec----ccccccCEEEEccCCCCCCCCCCCCCCCC-
Q 014990 71 TKIVIN-----------QFSRVVQHERCSFFGNVTLG---SSVSLS----ELRQLYHVVVLAYGAESDRALGIPGEDLI- 131 (415)
Q Consensus 71 ~~~~~~-----------~~~~~~~~~~~~~~~~~~v~---~~v~~~----~~~~~~d~lvlAtG~~~~~~~~i~g~~~~- 131 (415)
..++.+ .+...++..+++++.+.... ..++.. .....||+||||||+ .|..| ||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs-~p~~~--pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGS-RPREL--PGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCC-CCCCC--CCCCCCC
Confidence 112222 23445666789988876431 122322 123589999999999 45443 454422
Q ss_pred -CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEe
Q 014990 132 -GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVG 210 (415)
Q Consensus 132 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 210 (415)
.+++..+... . ...+++|+|||+|++|+|+|..|.+ .+ .+|+++.
T Consensus 157 ~~v~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g-~~Vtli~ 202 (462)
T PRK06416 157 RVIWTSDEALN----L---------DEVPKSLVVIGGGYIGVEFASAYAS--------------------LG-AEVTIVE 202 (462)
T ss_pred CeEEcchHhhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEE
Confidence 2434332221 1 0146899999999999999999985 34 5799999
Q ss_pred ecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccc
Q 014990 211 RRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRK 290 (415)
Q Consensus 211 r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~ 290 (415)
|.+.+...+ +++ +...+.+.+. +.||+++++..
T Consensus 203 ~~~~~l~~~-~~~---------------------------------~~~~l~~~l~-------------~~gV~i~~~~~ 235 (462)
T PRK06416 203 ALPRILPGE-DKE---------------------------------ISKLAERALK-------------KRGIKIKTGAK 235 (462)
T ss_pred cCCCcCCcC-CHH---------------------------------HHHHHHHHHH-------------HcCCEEEeCCE
Confidence 886542111 111 1112222222 56899999999
Q ss_pred cccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceee
Q 014990 291 PDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLK 370 (415)
Q Consensus 291 ~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v 370 (415)
+.++. . +++.+ .+.+.+ .++.+++++|.||+|+|.+|+.. .+. .+..++.++ +|++.+
T Consensus 236 V~~i~--~-~~~~v-~v~~~~---------------gg~~~~i~~D~vi~a~G~~p~~~-~l~-l~~~gl~~~-~g~i~v 293 (462)
T PRK06416 236 AKKVE--Q-TDDGV-TVTLED---------------GGKEETLEADYVLVAVGRRPNTE-NLG-LEELGVKTD-RGFIEV 293 (462)
T ss_pred EEEEE--E-eCCEE-EEEEEe---------------CCeeEEEEeCEEEEeeCCccCCC-CCC-chhcCCeec-CCEEeE
Confidence 98886 3 22222 222211 23335799999999999999761 111 245677777 899999
Q ss_pred ccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 371 NISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 371 ~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ ++|+.|||||+|||+..+. ....|+.||+.+|.+|..
T Consensus 294 d~~--~~t~~~~VyAiGD~~~~~~-~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 294 DEQ--LRTNVPNIYAIGDIVGGPM-LAHKASAEGIIAAEAIAG 333 (462)
T ss_pred CCC--CccCCCCEEEeeecCCCcc-hHHHHHHHHHHHHHHHcC
Confidence 987 7899999999999986544 455799999999999864
No 39
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.97 E-value=2.9e-30 Score=266.86 Aligned_cols=282 Identities=20% Similarity=0.228 Sum_probs=192.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC-C---CCCCc--chHHHHHHHHHHhhccCeEEEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG-V---APDHP--ETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
+.++|+||||||||++||.+|++.+ ++|+|||+. ..||.+... . .|+.. ...++.+.+.+.++..++++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 4689999999999999999999998 999999996 466654321 1 12221 2346677777778878888764
Q ss_pred ceEece-------EEEecccccccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCCCCCCCCe
Q 014990 92 NVTLGS-------SVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDT 161 (415)
Q Consensus 92 ~~~v~~-------~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 161 (415)
...... .+...+....|++||||||+ .++.|++||.+ ..+++++... .. ....+++
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa-~p~~~~ipG~~~~~~~~v~~~~~~----~~---------~~~~g~~ 145 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARGDYKTLAVLIATGA-SPRKLGFPGEEEFTGRGVAYCATC----DG---------EFFTGMD 145 (555)
T ss_pred cEEEEEEecCCEEEEEecCCEEEEeEEEECCCC-ccCCCCCCCHHHhCCceEEEEeec----Ch---------hhcCCCE
Confidence 333221 22233334578899999999 68888999864 2333332110 00 1226899
Q ss_pred EEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccc
Q 014990 162 AVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDD 241 (415)
Q Consensus 162 V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (415)
|+|||+|++|+|+|..|.+ . ..+|+++.|++.+.. ...
T Consensus 146 VvVIGgG~~g~E~A~~L~~--------------------~-g~~Vtli~~~~~~~~---~~~------------------ 183 (555)
T TIGR03143 146 VFVIGGGFAAAEEAVFLTR--------------------Y-ASKVTVIVREPDFTC---AKL------------------ 183 (555)
T ss_pred EEEECCCHHHHHHHHHHHc--------------------c-CCEEEEEEeCCcccc---CHH------------------
Confidence 9999999999999999985 3 468999999864210 000
Q ss_pred cCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCc
Q 014990 242 LIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGK 321 (415)
Q Consensus 242 ~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~ 321 (415)
..+.+. ...||+++++..+.++. . ++.+..+.+.+.
T Consensus 184 -------------------~~~~~~------------~~~gV~i~~~~~V~~i~--~--~~~v~~v~~~~~--------- 219 (555)
T TIGR03143 184 -------------------IAEKVK------------NHPKIEVKFNTELKEAT--G--DDGLRYAKFVNN--------- 219 (555)
T ss_pred -------------------HHHHHH------------hCCCcEEEeCCEEEEEE--c--CCcEEEEEEEEC---------
Confidence 001110 04589999999998886 3 444544444321
Q ss_pred ceeccCCceEEE--ecCe----eEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC-Cc
Q 014990 322 QYAVGTGEFEDL--DCGM----VLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG-PT 394 (415)
Q Consensus 322 ~~~~~~g~~~~i--~~D~----vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~-~~ 394 (415)
.+|+..++ +||. |+|++|++|+. .+... ++.++++|++.+|++ ++|++|||||+|||+.. +.
T Consensus 220 ----~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~----~l~~~-~l~l~~~G~I~vd~~--~~Ts~p~IyAaGDv~~~~~~ 288 (555)
T TIGR03143 220 ----VTGEITEYKAPKDAGTFGVFVFVGYAPSS----ELFKG-VVELDKRGYIPTNED--METNVPGVYAAGDLRPKELR 288 (555)
T ss_pred ----CCCCEEEEeccccccceEEEEEeCCCCCh----hHHhh-hcccCCCCeEEeCCc--cccCCCCEEEceeccCCCcc
Confidence 13443343 4776 99999999976 23332 466777899999987 88999999999999743 33
Q ss_pred cchhhhhhhHHHHHhhcccc
Q 014990 395 GIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~~~ 414 (415)
.+ ..|+.||+.||.+|.+.
T Consensus 289 ~v-~~A~~~G~~Aa~~i~~~ 307 (555)
T TIGR03143 289 QV-VTAVADGAIAATSAERY 307 (555)
T ss_pred hh-eeHHhhHHHHHHHHHHH
Confidence 34 37999999999998753
No 40
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.97 E-value=3.2e-30 Score=255.33 Aligned_cols=285 Identities=16% Similarity=0.197 Sum_probs=190.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccc-cCCCCCCcchHHHHH-HHHHHhhccCeEEEeceEec
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVR-SGVAPDHPETKIVIN-QFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~ 96 (415)
++|||||||+||+++|..|++.+++.+|+||++.+.. +..+. .........+.++.. ...+..++.+++++.+..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 5899999999999999999998888999999987742 21111 111122223334333 24455667789988776542
Q ss_pred ------eEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEEEcCC
Q 014990 97 ------SSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVILGQG 168 (415)
Q Consensus 97 ------~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~VVG~G 168 (415)
+.+..+.....||+||||||+ .++.|++||.+. +++...+.. .+... +..+++|+|||+|
T Consensus 83 ~id~~~~~v~~~~~~~~yd~LVlATG~-~~~~p~i~G~~~--v~~~~~~~~~~~~~~~---------~~~~~~vvViGgG 150 (377)
T PRK04965 83 DIDAEAQVVKSQGNQWQYDKLVLATGA-SAFVPPIPGREL--MLTLNSQQEYRAAETQ---------LRDAQRVLVVGGG 150 (377)
T ss_pred EEECCCCEEEECCeEEeCCEEEECCCC-CCCCCCCCCCce--EEEECCHHHHHHHHHH---------hhcCCeEEEECCC
Confidence 224444345689999999999 678889999754 444322221 11111 2257899999999
Q ss_pred hhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCc
Q 014990 169 NVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTD 248 (415)
Q Consensus 169 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 248 (415)
.+|+|+|..|.+ ...+|+++.+.+.+...+.++
T Consensus 151 ~~g~e~A~~L~~---------------------~g~~Vtlv~~~~~~l~~~~~~-------------------------- 183 (377)
T PRK04965 151 LIGTELAMDLCR---------------------AGKAVTLVDNAASLLASLMPP-------------------------- 183 (377)
T ss_pred HHHHHHHHHHHh---------------------cCCeEEEEecCCcccchhCCH--------------------------
Confidence 999999999986 235899999886542211111
Q ss_pred HHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCC
Q 014990 249 EEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTG 328 (415)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g 328 (415)
.....+.+.+. +.|++++++..+.++. . ++....+.+. +|
T Consensus 184 -------~~~~~l~~~l~-------------~~gV~i~~~~~v~~i~--~--~~~~~~v~~~----------------~g 223 (377)
T PRK04965 184 -------EVSSRLQHRLT-------------EMGVHLLLKSQLQGLE--K--TDSGIRATLD----------------SG 223 (377)
T ss_pred -------HHHHHHHHHHH-------------hCCCEEEECCeEEEEE--c--cCCEEEEEEc----------------CC
Confidence 11222223332 5689999998888886 3 2221123221 22
Q ss_pred ceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---cchhhhhhhHH
Q 014990 329 EFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---GIIATNLYCAE 405 (415)
Q Consensus 329 ~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---~~~~~a~~~g~ 405 (415)
++++||.||+|+|++|+. .+....|+..+ +| +.+|++ ++|+.|||||+|||+..+. .....|+.||+
T Consensus 224 --~~i~~D~vI~a~G~~p~~----~l~~~~gl~~~-~g-i~vd~~--l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~ 293 (377)
T PRK04965 224 --RSIEVDAVIAAAGLRPNT----ALARRAGLAVN-RG-IVVDSY--LQTSAPDIYALGDCAEINGQVLPFLQPIQLSAM 293 (377)
T ss_pred --cEEECCEEEECcCCCcch----HHHHHCCCCcC-CC-EEECCC--cccCCCCEEEeeecEeECCceeehHHHHHHHHH
Confidence 379999999999999975 34455566665 46 788886 8899999999999985322 23446899999
Q ss_pred HHHhhccc
Q 014990 406 ETVSSLSL 413 (415)
Q Consensus 406 ~~a~~i~~ 413 (415)
.+|.||..
T Consensus 294 ~~a~n~~g 301 (377)
T PRK04965 294 ALAKNLLG 301 (377)
T ss_pred HHHHHhcC
Confidence 99999864
No 41
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=6.8e-30 Score=258.08 Aligned_cols=284 Identities=17% Similarity=0.171 Sum_probs=192.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC-CCCcc-ccCCCCCCcc---------hH-------HHHHHH-
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGLV-RSGVAPDHPE---------TK-------IVINQF- 78 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~-~gg~~-~~~~~~~~~~---------~~-------~~~~~~- 78 (415)
+.++|+||||||||++||.+|++.+ .+|+|||+.+. .||.. ..++.|.+.. .. .+...+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR 79 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999 99999999864 56643 3444444221 11 111111
Q ss_pred ----HHHhhccCeEEEeceEec-----eEEEeccc--ccccCEEEEccCCCCCCCCCCCCCC-CCCeeechhhHHHhcCC
Q 014990 79 ----SRVVQHERCSFFGNVTLG-----SSVSLSEL--RQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGH 146 (415)
Q Consensus 79 ----~~~~~~~~~~~~~~~~v~-----~~v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~ 146 (415)
..+.+..+++++.+.... ..+...+. ...||+||||||+ .|..|++||.+ .++++++.++.. .
T Consensus 80 ~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs-~p~~p~i~G~~~~~~v~~~~~~~~----~ 154 (441)
T PRK08010 80 NKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGA-QTVVPPIPGITTTPGVYDSTGLLN----L 154 (441)
T ss_pred HhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCC-cCCCCCCCCccCCCCEEChhHhhc----c
Confidence 122333478877665321 12332333 3589999999999 67888999975 456666544331 1
Q ss_pred CCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHH
Q 014990 147 PDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELRE 226 (415)
Q Consensus 147 ~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~ 226 (415)
...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|++.+...+ ++
T Consensus 155 ---------~~~~~~v~ViGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~-~~---- 199 (441)
T PRK08010 155 ---------KELPGHLGILGGGYIGVEFASMFAN--------------------FG-SKVTILEAASLFLPRE-DR---- 199 (441)
T ss_pred ---------cccCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCCCCCCc-CH----
Confidence 1146899999999999999999986 34 5899999986542111 11
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSG 306 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~ 306 (415)
. +...+.+.+. +.||+++++..+.++. . +++ .
T Consensus 200 ------------------------~-----~~~~l~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~---~ 231 (441)
T PRK08010 200 ------------------------D-----IADNIATILR-------------DQGVDIILNAHVERIS--H-HEN---Q 231 (441)
T ss_pred ------------------------H-----HHHHHHHHHH-------------hCCCEEEeCCEEEEEE--E-cCC---E
Confidence 1 1111222222 6689999999888886 3 222 2
Q ss_pred EEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeee
Q 014990 307 VHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVC 386 (415)
Q Consensus 307 v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfai 386 (415)
+.+.. ++ + ++++|.|++|+|.+|+.. .+ .....++.++++|++.+|++ ++|+.|||||+
T Consensus 232 v~v~~---------------~~-g-~i~~D~vl~a~G~~pn~~-~l-~~~~~gl~~~~~G~i~vd~~--~~Ts~~~IyA~ 290 (441)
T PRK08010 232 VQVHS---------------EH-A-QLAVDALLIASGRQPATA-SL-HPENAGIAVNERGAIVVDKY--LHTTADNIWAM 290 (441)
T ss_pred EEEEE---------------cC-C-eEEeCEEEEeecCCcCCC-Cc-CchhcCcEECCCCcEEECCC--cccCCCCEEEe
Confidence 22211 11 1 488999999999999762 11 23456778888899999987 78999999999
Q ss_pred eccccCCccchhhhhhhHHHHHhhccc
Q 014990 387 GWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 387 GD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|||+..+ .....|..||+.++.+|..
T Consensus 291 GD~~~~~-~~~~~a~~~~~~~~~~~~g 316 (441)
T PRK08010 291 GDVTGGL-QFTYISLDDYRIVRDELLG 316 (441)
T ss_pred eecCCCc-cchhHHHHHHHHHHHHHcC
Confidence 9998644 4555799999999999863
No 42
>PLN02507 glutathione reductase
Probab=99.97 E-value=6.4e-30 Score=260.92 Aligned_cols=286 Identities=17% Similarity=0.193 Sum_probs=191.7
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC---------CCCCCCcc-ccCCCCCCc--------------
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR---------LPTPFGLV-RSGVAPDHP-------------- 69 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~---------~~~~gg~~-~~~~~~~~~-------------- 69 (415)
++.+..++|+||||||||+++|.++++.| .+|+|||+ ...+||.. ..|+.|.+.
T Consensus 20 ~~~~~~yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~ 97 (499)
T PLN02507 20 NATHYDFDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDA 97 (499)
T ss_pred cccccccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHH
Confidence 33345689999999999999999999999 99999996 24466653 223323211
Q ss_pred -------------chHHHH-----------HHHHHHhhccCeEEEeceEe--c---eEEEecccc---cccCEEEEccCC
Q 014990 70 -------------ETKIVI-----------NQFSRVVQHERCSFFGNVTL--G---SSVSLSELR---QLYHVVVLAYGA 117 (415)
Q Consensus 70 -------------~~~~~~-----------~~~~~~~~~~~~~~~~~~~v--~---~~v~~~~~~---~~~d~lvlAtG~ 117 (415)
....+. ..+..++...+++++.+... + ..++..++. ..||+||||||+
T Consensus 98 ~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 98 KNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGS 177 (499)
T ss_pred HhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCC
Confidence 011111 11234455578888877432 1 223333332 478999999999
Q ss_pred CCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 118 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
.|..|++||.+. ..+..+... +. ..+++|+|||+|.+|+|+|..+.+
T Consensus 178 -~p~~p~ipG~~~--~~~~~~~~~-l~------------~~~k~vvVIGgG~ig~E~A~~l~~----------------- 224 (499)
T PLN02507 178 -RAQRPNIPGKEL--AITSDEALS-LE------------ELPKRAVVLGGGYIAVEFASIWRG----------------- 224 (499)
T ss_pred -CCCCCCCCCccc--eechHHhhh-hh------------hcCCeEEEECCcHHHHHHHHHHHH-----------------
Confidence 678888998642 222222211 10 136899999999999999999885
Q ss_pred hhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCC
Q 014990 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (415)
.+ .+|+++.|.+.....+ ++++ +..+.+.+.
T Consensus 225 ---~G-~~Vtli~~~~~~l~~~-d~~~---------------------------------~~~l~~~l~----------- 255 (499)
T PLN02507 225 ---MG-ATVDLFFRKELPLRGF-DDEM---------------------------------RAVVARNLE----------- 255 (499)
T ss_pred ---cC-CeEEEEEecCCcCccc-CHHH---------------------------------HHHHHHHHH-----------
Confidence 33 5899999886432211 1111 112222232
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCC
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~ 357 (415)
+.||+++++..+.++. . .++.+ .+.+ ++++++++|.||+++|++|+. ..+ ....
T Consensus 256 --~~GI~i~~~~~V~~i~--~-~~~~~-~v~~------------------~~g~~i~~D~vl~a~G~~pn~-~~l-~l~~ 309 (499)
T PLN02507 256 --GRGINLHPRTNLTQLT--K-TEGGI-KVIT------------------DHGEEFVADVVLFATGRAPNT-KRL-NLEA 309 (499)
T ss_pred --hCCCEEEeCCEEEEEE--E-eCCeE-EEEE------------------CCCcEEEcCEEEEeecCCCCC-CCC-Cchh
Confidence 5689999999888886 3 22322 1221 122379999999999999976 211 1345
Q ss_pred CCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 358 KGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 358 ~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
.++.++++|++.+|++ ++|++|||||+|||+..+. +...|++||+.+|.+|.
T Consensus 310 ~gl~~~~~G~I~Vd~~--~~Ts~p~IyAiGDv~~~~~-l~~~A~~qg~~aa~ni~ 361 (499)
T PLN02507 310 VGVELDKAGAVKVDEY--SRTNIPSIWAIGDVTNRIN-LTPVALMEGTCFAKTVF 361 (499)
T ss_pred hCcEECCCCcEecCCC--CcCCCCCEEEeeEcCCCCc-cHHHHHHHHHHHHHHHc
Confidence 6788888899999987 7899999999999986444 55689999999999986
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-29 Score=255.58 Aligned_cols=283 Identities=16% Similarity=0.203 Sum_probs=193.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC-CCCc-cccCCCCCCcc---------hHHHHH----------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT-PFGL-VRSGVAPDHPE---------TKIVIN---------- 76 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~-~gg~-~~~~~~~~~~~---------~~~~~~---------- 76 (415)
..++|+||||||||++||..|++.| .+|+|||+.+. +||. ...++.|.+.. ..++..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR 79 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 99999999874 4663 44454454431 111111
Q ss_pred -HHHHHhhccCeEEEeceEe---ceEEEecc----cccccCEEEEccCCCCCCCCCCCCCC-CCCeeechhhHHHhcCCC
Q 014990 77 -QFSRVVQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRALGIPGED-LIGVHSAREFVWWYNGHP 147 (415)
Q Consensus 77 -~~~~~~~~~~~~~~~~~~v---~~~v~~~~----~~~~~d~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~~ 147 (415)
...+.+...+++++.+... .+.+.... ....||+||||||+ .|+.|++||.+ .++++++.++...
T Consensus 80 ~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs-~~~~p~i~G~~~~~~v~~~~~~~~~----- 153 (438)
T PRK07251 80 GKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGA-VSNVLPIPGLADSKHVYDSTGIQSL----- 153 (438)
T ss_pred HHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCC-CCCCCCCCCcCCCCcEEchHHHhcc-----
Confidence 1223455668888776542 22333321 23589999999999 68888999974 5567666544321
Q ss_pred CCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHH
Q 014990 148 DGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (415)
Q Consensus 148 ~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~ 227 (415)
...+++|+|||+|.+|+|+|..+.+ .+ .+|+++.|++.+...+ .++
T Consensus 154 --------~~~~~~vvIIGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~~~~l~~~-~~~---- 199 (438)
T PRK07251 154 --------ETLPERLGIIGGGNIGLEFAGLYNK--------------------LG-SKVTVLDAASTILPRE-EPS---- 199 (438)
T ss_pred --------hhcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCccCCCC-CHH----
Confidence 1146899999999999999999985 34 5799999986542111 111
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeE
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v 307 (415)
.+....+.+. +.||+++++..+.++. . +++. +
T Consensus 200 -----------------------------~~~~~~~~l~-------------~~GI~i~~~~~V~~i~--~-~~~~---v 231 (438)
T PRK07251 200 -----------------------------VAALAKQYME-------------EDGITFLLNAHTTEVK--N-DGDQ---V 231 (438)
T ss_pred -----------------------------HHHHHHHHHH-------------HcCCEEEcCCEEEEEE--e-cCCE---E
Confidence 1111222222 5689999998888886 3 2222 2
Q ss_pred EEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeee
Q 014990 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCG 387 (415)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiG 387 (415)
.... ++ +++++|.||+|+|++|+. ..+.+ ...++..+++|.+.+|++ ++|+.|||||+|
T Consensus 232 ~v~~---------------~g--~~i~~D~viva~G~~p~~-~~l~l-~~~~~~~~~~g~i~vd~~--~~t~~~~IyaiG 290 (438)
T PRK07251 232 LVVT---------------ED--ETYRFDALLYATGRKPNT-EPLGL-ENTDIELTERGAIKVDDY--CQTSVPGVFAVG 290 (438)
T ss_pred EEEE---------------CC--eEEEcCEEEEeeCCCCCc-ccCCc-hhcCcEECCCCcEEECCC--cccCCCCEEEee
Confidence 2211 22 379999999999999975 22222 334666777899999986 889999999999
Q ss_pred ccccCCccchhhhhhhHHHHHhhcc
Q 014990 388 WLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 388 D~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
||+.++. ....|..+|+.++.++.
T Consensus 291 D~~~~~~-~~~~a~~~~~~~~~~~~ 314 (438)
T PRK07251 291 DVNGGPQ-FTYISLDDFRIVFGYLT 314 (438)
T ss_pred ecCCCcc-cHhHHHHHHHHHHHHHc
Confidence 9986544 34468999999988775
No 44
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.97 E-value=4.7e-30 Score=274.39 Aligned_cols=291 Identities=14% Similarity=0.141 Sum_probs=199.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCC-Ccc-ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPF-GLV-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~g-g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
+++|||||+|+||+++|..|+++. ++++|+||++++.++ ... ....... ....++.......++..+++++.+..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 458999999999999999998764 358999999998753 111 0001111 12233333334556667899988764
Q ss_pred ec------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeech--hhHHHhcCCCCCCCCCCCCCCCCeEEEE
Q 014990 95 LG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAR--EFVWWYNGHPDGKNLSPDLKSTDTAVIL 165 (415)
Q Consensus 95 v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~k~V~VV 165 (415)
+. +.+...++ ...||+||||||+ .|+.|++||.+.++++... +....+... ...+++++||
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~---------~~~~k~vvVI 151 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGS-YPWIPPIKGSETQDCFVYRTIEDLNAIEAC---------ARRSKRGAVV 151 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCC-CcCCCCCCCCCCCCeEEECCHHHHHHHHHH---------HhcCCeEEEE
Confidence 42 23444444 3589999999999 7888899998877765432 222222111 1257899999
Q ss_pred cCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCC
Q 014990 166 GQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (415)
Q Consensus 166 G~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (415)
|+|.+|+|+|..|.+ .+ .+|+++.+.+.+.....+++.
T Consensus 152 GgG~iGlE~A~~L~~--------------------~G-~~VtvVe~~~~ll~~~ld~~~--------------------- 189 (847)
T PRK14989 152 GGGLLGLEAAGALKN--------------------LG-VETHVIEFAPMLMAEQLDQMG--------------------- 189 (847)
T ss_pred CCCHHHHHHHHHHHH--------------------cC-CeEEEEeccccchhhhcCHHH---------------------
Confidence 999999999999986 34 479999887654221111111
Q ss_pred CCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec
Q 014990 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (415)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~ 325 (415)
...+.+.+. +.||+++++..+.++. .+..+....+.+.
T Consensus 190 ------------~~~l~~~L~-------------~~GV~v~~~~~v~~I~--~~~~~~~~~v~~~--------------- 227 (847)
T PRK14989 190 ------------GEQLRRKIE-------------SMGVRVHTSKNTLEIV--QEGVEARKTMRFA--------------- 227 (847)
T ss_pred ------------HHHHHHHHH-------------HCCCEEEcCCeEEEEE--ecCCCceEEEEEC---------------
Confidence 112222332 6689999999988886 3112223333332
Q ss_pred cCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---ccchhhhhh
Q 014990 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLY 402 (415)
Q Consensus 326 ~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---~~~~~~a~~ 402 (415)
+| +++++|+||||+|++|+. .+....|+.++++|.+.||++ ++|+.|||||+|||+... .+....|..
T Consensus 228 -dG--~~i~~D~Vv~A~G~rPn~----~L~~~~Gl~~~~~G~I~VD~~--l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~ 298 (847)
T PRK14989 228 -DG--SELEVDFIVFSTGIRPQD----KLATQCGLAVAPRGGIVINDS--CQTSDPDIYAIGECASWNNRVFGLVAPGYK 298 (847)
T ss_pred -CC--CEEEcCEEEECCCcccCc----hHHhhcCccCCCCCcEEECCC--CcCCCCCEEEeecceeEcCcccccHHHHHH
Confidence 22 279999999999999976 355667888888899999987 889999999999998643 345668899
Q ss_pred hHHHHHhhccc
Q 014990 403 CAEETVSSLSL 413 (415)
Q Consensus 403 ~g~~~a~~i~~ 413 (415)
||+.||.+|..
T Consensus 299 ~a~vaa~~i~g 309 (847)
T PRK14989 299 MAQVAVDHLLG 309 (847)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 45
>PLN02546 glutathione reductase
Probab=99.97 E-value=1.2e-29 Score=260.54 Aligned_cols=284 Identities=15% Similarity=0.164 Sum_probs=190.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC---------CCCCCc-cccCCCCCCc------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---------PTPFGL-VRSGVAPDHP------------------ 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~---------~~~gg~-~~~~~~~~~~------------------ 69 (415)
..++|+|||+||||+.||..+++.| .+|+|||+. ..+||. ...|+.|.+.
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g 155 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFG 155 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3579999999999999999999999 999999961 234442 2222222110
Q ss_pred ---------c-----------hHHHHHHHHHHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCC
Q 014990 70 ---------E-----------TKIVINQFSRVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 70 ---------~-----------~~~~~~~~~~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~ 126 (415)
. ...+...+...++..+++++.+... ...+..+.....||+||||||+ .|..|++|
T Consensus 156 ~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs-~p~~P~Ip 234 (558)
T PLN02546 156 WKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGG-RPFIPDIP 234 (558)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCC-CCCCCCCC
Confidence 0 0112233455566778998876443 1234443334689999999999 77888999
Q ss_pred CCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 127 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
|.+ .+.++.+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|
T Consensus 235 G~~--~v~~~~~~l~----~---------~~~~k~V~VIGgG~iGvE~A~~L~~--------------------~g-~~V 278 (558)
T PLN02546 235 GIE--HAIDSDAALD----L---------PSKPEKIAIVGGGYIALEFAGIFNG--------------------LK-SDV 278 (558)
T ss_pred Chh--hccCHHHHHh----c---------cccCCeEEEECCCHHHHHHHHHHHh--------------------cC-CeE
Confidence 864 2333333221 1 1157899999999999999999985 33 589
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.|.+.+...+ ++++ +..+.+.+. ++||+++
T Consensus 279 tlv~~~~~il~~~-d~~~---------------------------------~~~l~~~L~-------------~~GV~i~ 311 (558)
T PLN02546 279 HVFIRQKKVLRGF-DEEV---------------------------------RDFVAEQMS-------------LRGIEFH 311 (558)
T ss_pred EEEEecccccccc-CHHH---------------------------------HHHHHHHHH-------------HCCcEEE
Confidence 9999886542211 1111 111222222 5689999
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G 366 (415)
++..+.++. ..+++.+ .+. .++++..++|.|||++|++|+.. .+ ..+..++.++++|
T Consensus 312 ~~~~v~~i~--~~~~g~v-~v~------------------~~~g~~~~~D~Viva~G~~Pnt~-~L-~le~~gl~~d~~G 368 (558)
T PLN02546 312 TEESPQAII--KSADGSL-SLK------------------TNKGTVEGFSHVMFATGRKPNTK-NL-GLEEVGVKMDKNG 368 (558)
T ss_pred eCCEEEEEE--EcCCCEE-EEE------------------ECCeEEEecCEEEEeeccccCCC-cC-ChhhcCCcCCCCC
Confidence 999888886 3112222 121 11223456899999999999761 11 1245678888889
Q ss_pred ceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 367 ~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++.+|++ ++|++|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 369 ~I~VD~~--l~Ts~p~IYAaGDv~~~~~-l~~~A~~~g~~~a~~i~g 412 (558)
T PLN02546 369 AIEVDEY--SRTSVPSIWAVGDVTDRIN-LTPVALMEGGALAKTLFG 412 (558)
T ss_pred cEeECCC--ceeCCCCEEEeeccCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 9999987 7899999999999986554 455899999999999864
No 46
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.97 E-value=6.2e-30 Score=256.77 Aligned_cols=303 Identities=15% Similarity=0.120 Sum_probs=193.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..+++|||||||+||+++|..|.+.. .+|+|||+++++.-. +.+....+...++++...+...++..+++++.+...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~--~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKK--YNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCC--CeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 46789999999999999999997655 899999998764321 111222333345566667777777778888776554
Q ss_pred ce-----EEEe----------ccc-ccccCEEEEccCCCCCCCCCCCCCCC-----CCeeechhhHHHhcCC---CCCCC
Q 014990 96 GS-----SVSL----------SEL-RQLYHVVVLAYGAESDRALGIPGEDL-----IGVHSAREFVWWYNGH---PDGKN 151 (415)
Q Consensus 96 ~~-----~v~~----------~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~-----~~v~~~~~~~~~~~~~---~~~~~ 151 (415)
.. .+.+ .++ ...||+||||||+ .+..+++||... ..+.++..+...+... .+...
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs-~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~ 164 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGA-RPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPT 164 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCc-ccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 22 2433 222 3589999999999 677778998642 1122222222221110 00000
Q ss_pred CCC-CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc-----CCcceEEEEeecCcccCCCCHHHHH
Q 014990 152 LSP-DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG-----SSIRKVYLVGRRGPVQAACTAKELR 225 (415)
Q Consensus 152 ~~~-~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~~r~~~~~~~~~~~~l~ 225 (415)
... .....++|+|||+|++|+|+|.+|.+.. -...++ ....+|+++++++.+...+.
T Consensus 165 ~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~------------~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~----- 227 (424)
T PTZ00318 165 TSVEERKRLLHFVVVGGGPTGVEFAAELADFF------------RDDVRNLNPELVEECKVTVLEAGSEVLGSFD----- 227 (424)
T ss_pred CChHHHhccCEEEEECCCHHHHHHHHHHHHHH------------HHHHHhhhhcccccCEEEEEcCCCcccccCC-----
Confidence 000 0012358999999999999999997410 000000 01357999998865422111
Q ss_pred HHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCee
Q 014990 226 EILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305 (415)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~ 305 (415)
+.+++...+.|. +.||+++++..+.++. . +
T Consensus 228 -----------------------------~~~~~~~~~~L~-------------~~gV~v~~~~~v~~v~--~--~---- 257 (424)
T PTZ00318 228 -----------------------------QALRKYGQRRLR-------------RLGVDIRTKTAVKEVL--D--K---- 257 (424)
T ss_pred -----------------------------HHHHHHHHHHHH-------------HCCCEEEeCCeEEEEe--C--C----
Confidence 112222333332 6789999998888885 2 2
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeee
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYV 385 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfa 385 (415)
.+.+. +| +++++|++||++|.+|++ +....++..+++|++.+|+++ ..+++|||||
T Consensus 258 ~v~~~----------------~g--~~i~~d~vi~~~G~~~~~-----~~~~~~l~~~~~G~I~Vd~~l-~~~~~~~IfA 313 (424)
T PTZ00318 258 EVVLK----------------DG--EVIPTGLVVWSTGVGPGP-----LTKQLKVDKTSRGRISVDDHL-RVKPIPNVFA 313 (424)
T ss_pred EEEEC----------------CC--CEEEccEEEEccCCCCcc-----hhhhcCCcccCCCcEEeCCCc-ccCCCCCEEE
Confidence 23332 22 279999999999999965 334556777888999999973 3479999999
Q ss_pred eeccccCC----ccchhhhhhhHHHHHhhccc
Q 014990 386 CGWLKRGP----TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 386 iGD~~~~~----~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|||+..+ ......|+.||+.+|.+|..
T Consensus 314 iGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 314 LGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred EeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 99998531 22344799999999999975
No 47
>PTZ00058 glutathione reductase; Provisional
Probab=99.97 E-value=3.9e-29 Score=256.62 Aligned_cols=283 Identities=12% Similarity=0.187 Sum_probs=188.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCc-------------------------ch
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP-------------------------ET 71 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~-------------------------~~ 71 (415)
..++|+||||||||++||..+++.| .+|+|||+.. +|| ....|+.|.+. ..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G--~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNK--AKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 5779999999999999999999999 9999999874 555 34444433321 00
Q ss_pred H-------HH----HHHHHHHhhccCeEEEeceEe--c-eEEE----------------------------eccc-cccc
Q 014990 72 K-------IV----INQFSRVVQHERCSFFGNVTL--G-SSVS----------------------------LSEL-RQLY 108 (415)
Q Consensus 72 ~-------~~----~~~~~~~~~~~~~~~~~~~~v--~-~~v~----------------------------~~~~-~~~~ 108 (415)
. ++ ...+...++..+++++.+... . .++. .+++ ...|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 1 11 112334456678888877642 1 1111 1222 3589
Q ss_pred CEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCccccccc
Q 014990 109 HVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATT 188 (415)
Q Consensus 109 d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~ 188 (415)
|+||||||+ .|+.|++||.+ .++++.++.. +..+++|+|||+|.+|+|+|..+.+
T Consensus 204 d~lVIATGS-~P~~P~IpG~~--~v~ts~~~~~--------------l~~pk~VvIIGgG~iGlE~A~~l~~-------- 258 (561)
T PTZ00058 204 KNILIAVGN-KPIFPDVKGKE--FTISSDDFFK--------------IKEAKRIGIAGSGYIAVELINVVNR-------- 258 (561)
T ss_pred CEEEEecCC-CCCCCCCCCce--eEEEHHHHhh--------------ccCCCEEEEECCcHHHHHHHHHHHH--------
Confidence 999999999 78888999864 3444433321 1247999999999999999999985
Q ss_pred CchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHH
Q 014990 189 DIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKA 268 (415)
Q Consensus 189 ~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~ 268 (415)
.+ .+|+++.+++.+...+ ++++. ..+.+.+.
T Consensus 259 ------------~G-~~Vtli~~~~~il~~~-d~~i~---------------------------------~~l~~~L~-- 289 (561)
T PTZ00058 259 ------------LG-AESYIFARGNRLLRKF-DETII---------------------------------NELENDMK-- 289 (561)
T ss_pred ------------cC-CcEEEEEecccccccC-CHHHH---------------------------------HHHHHHHH--
Confidence 34 5899999987543221 11111 11222222
Q ss_pred HhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCcc
Q 014990 269 AASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVP 348 (415)
Q Consensus 269 ~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~ 348 (415)
+.||+++++..+.++. .++++.+. +.+ .+.++++++|.|++|+|++|+.
T Consensus 290 -----------~~GV~i~~~~~V~~I~--~~~~~~v~-v~~-----------------~~~~~~i~aD~VlvA~Gr~Pn~ 338 (561)
T PTZ00058 290 -----------KNNINIITHANVEEIE--KVKEKNLT-IYL-----------------SDGRKYEHFDYVIYCVGRSPNT 338 (561)
T ss_pred -----------HCCCEEEeCCEEEEEE--ecCCCcEE-EEE-----------------CCCCEEEECCEEEECcCCCCCc
Confidence 5689999999888886 31122221 111 1222479999999999999975
Q ss_pred CCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccC---------------------------------Ccc
Q 014990 349 VNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRG---------------------------------PTG 395 (415)
Q Consensus 349 ~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~---------------------------------~~~ 395 (415)
..+.. ...++ .+++|.+.+|++ ++|+.|||||+|||+.. ...
T Consensus 339 -~~L~l-~~~~~-~~~~G~I~VDe~--lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 413 (561)
T PTZ00058 339 -EDLNL-KALNI-KTPKGYIKVDDN--QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQ 413 (561)
T ss_pred -cccCc-cccce-ecCCCeEEECcC--CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcC
Confidence 22221 22233 345799999987 88999999999999861 234
Q ss_pred chhhhhhhHHHHHhhccc
Q 014990 396 IIATNLYCAEETVSSLSL 413 (415)
Q Consensus 396 ~~~~a~~~g~~~a~~i~~ 413 (415)
+...|.+||+.+|.+|..
T Consensus 414 la~~A~~~g~~aa~ni~g 431 (561)
T PTZ00058 414 LTPVAINAGRLLADRLFG 431 (561)
T ss_pred chHHHHHHHHHHHHHHhC
Confidence 455899999999999864
No 48
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.97 E-value=5.9e-30 Score=257.97 Aligned_cols=282 Identities=15% Similarity=0.203 Sum_probs=183.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC----c-chHHHHHH-HHHHhhccCeEEEec
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH----P-ETKIVINQ-FSRVVQHERCSFFGN 92 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~----~-~~~~~~~~-~~~~~~~~~~~~~~~ 92 (415)
+++|||||||+||++||..|++.+++.+|+|||+++.++ +...++ |.. . ...+.... ...+.++.+++++.+
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~ 78 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTY 78 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeC
Confidence 358999999999999999999987779999999998654 221111 111 1 11111111 123335568888765
Q ss_pred eEec------eEEEeccc------ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCC
Q 014990 93 VTLG------SSVSLSEL------RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKS 158 (415)
Q Consensus 93 ~~v~------~~v~~~~~------~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~ 158 (415)
..+. +.+.+.+. ...||+||||||+ .|+.|++++ +++++...... .+..... -..
T Consensus 79 ~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs-~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~-------~~~ 147 (438)
T PRK13512 79 HEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGA-SANSLGFES---DITFTLRNLEDTDAIDQFIK-------ANQ 147 (438)
T ss_pred CEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCC-CCCCCCCCC---CCeEEecCHHHHHHHHHHHh-------hcC
Confidence 5542 22333221 2479999999999 566656543 34443322111 1110000 014
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIR 238 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~ 238 (415)
+++|+|||+|.+|+|+|..|.+ .+ .+|+++.+++.+...+ +++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtli~~~~~l~~~~-d~~--------------- 190 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE--------------------RG-LHPTLIHRSDKINKLM-DAD--------------- 190 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecccccchhc-CHH---------------
Confidence 6899999999999999999986 34 5899999987542111 111
Q ss_pred ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCC
Q 014990 239 EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGG 318 (415)
Q Consensus 239 ~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~ 318 (415)
+...+.+.+. +.||+++++..+.++. . . .+++.
T Consensus 191 ------------------~~~~l~~~l~-------------~~gI~i~~~~~v~~i~--~--~----~v~~~-------- 223 (438)
T PRK13512 191 ------------------MNQPILDELD-------------KREIPYRLNEEIDAIN--G--N----EVTFK-------- 223 (438)
T ss_pred ------------------HHHHHHHHHH-------------hcCCEEEECCeEEEEe--C--C----EEEEC--------
Confidence 1112222222 6689999998888874 2 1 23331
Q ss_pred CCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC-----
Q 014990 319 PGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP----- 393 (415)
Q Consensus 319 ~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~----- 393 (415)
+| ++++||.|+||+|++|+. ++....|+.++++|++.+|++ ++|++|||||+|||+...
T Consensus 224 --------~g--~~~~~D~vl~a~G~~pn~----~~l~~~gl~~~~~G~i~Vd~~--~~t~~~~IyA~GD~~~~~~~~~~ 287 (438)
T PRK13512 224 --------SG--KVEHYDMIIEGVGTHPNS----KFIESSNIKLDDKGFIPVNDK--FETNVPNIYAIGDIITSHYRHVD 287 (438)
T ss_pred --------CC--CEEEeCEEEECcCCCcCh----HHHHhcCcccCCCCcEEECCC--cccCCCCEEEeeeeEEeeeccCC
Confidence 22 268999999999999976 345666788888899999987 789999999999997421
Q ss_pred ----ccchhhhhhhHHHHHhhccc
Q 014990 394 ----TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 394 ----~~~~~~a~~~g~~~a~~i~~ 413 (415)
..+...|.+||+.+|++|..
T Consensus 288 ~~~~~~la~~A~~~a~~~a~ni~g 311 (438)
T PRK13512 288 LPASVPLAWGAHRAASIVAEQIAG 311 (438)
T ss_pred CceecccchHHHHHHHHHHHHhcC
Confidence 12333588999999999864
No 49
>PRK07846 mycothione reductase; Reviewed
Probab=99.97 E-value=2.8e-29 Score=253.61 Aligned_cols=281 Identities=14% Similarity=0.180 Sum_probs=187.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc--------------------------chH
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------------------------ETK 72 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~--------------------------~~~ 72 (415)
+++|+||||||+|.+||..+ .| .+|+|||+...-|.++..|+.|.+. ...
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~G--~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--AD--KRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--CC--CeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 37999999999999998763 57 9999999875444444444444221 011
Q ss_pred HH-------HHHHH-----HH-hhccCeEEEeceEe---ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeee
Q 014990 73 IV-------INQFS-----RV-VQHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHS 135 (415)
Q Consensus 73 ~~-------~~~~~-----~~-~~~~~~~~~~~~~v---~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~ 135 (415)
++ .+.+. .. ++..+++++.+... .+.+++.++ ...||+||||||+ .|+.|++||.+...+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs-~p~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGS-RPVIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCC-CCCCCCCCCcCCccEEc
Confidence 11 11111 11 44457777776554 234555443 3589999999999 78888999876444444
Q ss_pred chhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 136 AREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+... +. ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+
T Consensus 156 ~~~~~~-l~------------~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~~Vtli~~~~~l 201 (451)
T PRK07846 156 SDTIMR-LP------------ELPESLVIVGGGFIAAEFAHVFSA--------------------LG-VRVTVVNRSGRL 201 (451)
T ss_pred hHHHhh-hh------------hcCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEEcCCcc
Confidence 443321 11 136899999999999999999986 34 589999998754
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
... .++++ +..+.+++ +.+++++++..+.++.
T Consensus 202 l~~-~d~~~---------------------------------~~~l~~l~--------------~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 202 LRH-LDDDI---------------------------------SERFTELA--------------SKRWDVRLGRNVVGVS 233 (451)
T ss_pred ccc-cCHHH---------------------------------HHHHHHHH--------------hcCeEEEeCCEEEEEE
Confidence 211 11111 11111111 4469999998888885
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGD 375 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~ 375 (415)
. .++.+ .+.+. +| ++++||.|++|+|++|+. ..+. .+..++.++++|++.+|++
T Consensus 234 --~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~Vd~~-- 287 (451)
T PRK07846 234 --Q-DGSGV-TLRLD----------------DG--STVEADVLLVATGRVPNG-DLLD-AAAAGVDVDEDGRVVVDEY-- 287 (451)
T ss_pred --E-cCCEE-EEEEC----------------CC--cEeecCEEEEEECCccCc-cccC-chhcCceECCCCcEeECCC--
Confidence 3 22221 12221 22 379999999999999976 2111 2456788888999999987
Q ss_pred CCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 376 SSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 376 ~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|++|||||+|||+..+ .+...|.+||+.+|+||..
T Consensus 288 ~~Ts~p~IyA~GD~~~~~-~l~~~A~~~g~~~a~ni~~ 324 (451)
T PRK07846 288 QRTSAEGVFALGDVSSPY-QLKHVANHEARVVQHNLLH 324 (451)
T ss_pred cccCCCCEEEEeecCCCc-cChhHHHHHHHHHHHHHcC
Confidence 789999999999998643 4556799999999999863
No 50
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=255.77 Aligned_cols=286 Identities=16% Similarity=0.245 Sum_probs=185.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchH--HHHHHHH-----------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETK--IVINQFS----------------- 79 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~--~~~~~~~----------------- 79 (415)
.++|+||||||||++||.+|++.| .+|+|||+...-|.....+..|.+.... ++...+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~~ 81 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDYG 81 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCHH
Confidence 589999999999999999999999 9999999875444445555555432111 1111111
Q ss_pred ------------------HHhhccCeEEEeceEe---ceEEEe--ccc---ccccCEEEEccCCCCCCCCCCCCCCC-CC
Q 014990 80 ------------------RVVQHERCSFFGNVTL---GSSVSL--SEL---RQLYHVVVLAYGAESDRALGIPGEDL-IG 132 (415)
Q Consensus 80 ------------------~~~~~~~~~~~~~~~v---~~~v~~--~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~-~~ 132 (415)
..++..+++.+.+... ...+.+ .++ ...||+||||||+ .|+.| ||.+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~~--pg~~~~~~ 158 (466)
T PRK07818 82 AAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGS-STRLL--PGTSLSEN 158 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCC-CCCCC--CCCCCCCc
Confidence 1112234555443221 112222 222 3589999999999 55543 55542 23
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . -..+++|+|||+|.+|+|+|..|.+ .+ .+|+++.++
T Consensus 159 v~~~~~~~~---~----------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtlv~~~ 204 (466)
T PRK07818 159 VVTYEEQIL---S----------RELPKSIVIAGAGAIGMEFAYVLKN--------------------YG-VDVTIVEFL 204 (466)
T ss_pred EEchHHHhc---c----------ccCCCeEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecC
Confidence 443322110 0 0146899999999999999999986 34 479999987
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+. |....+ +...+.+.+. ++||+++++..+.
T Consensus 205 ~~~l-----------------------------~~~d~~-----~~~~l~~~l~-------------~~gV~i~~~~~v~ 237 (466)
T PRK07818 205 DRAL-----------------------------PNEDAE-----VSKEIAKQYK-------------KLGVKILTGTKVE 237 (466)
T ss_pred CCcC-----------------------------CccCHH-----HHHHHHHHHH-------------HCCCEEEECCEEE
Confidence 6542 211111 1122223332 5689999999998
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . ++....+.+.. .+|+.+++++|.||||+|++|+. ..+ .....|+.++++|.+.+|+
T Consensus 238 ~i~--~--~~~~~~v~~~~--------------~~g~~~~i~~D~vi~a~G~~pn~-~~l-~l~~~g~~~~~~g~i~vd~ 297 (466)
T PRK07818 238 SID--D--NGSKVTVTVSK--------------KDGKAQELEADKVLQAIGFAPRV-EGY-GLEKTGVALTDRGAIAIDD 297 (466)
T ss_pred EEE--E--eCCeEEEEEEe--------------cCCCeEEEEeCEEEECcCcccCC-CCC-CchhcCcEECCCCcEeeCC
Confidence 886 3 33222233321 03444579999999999999975 211 1245677788889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 298 ~--~~Ts~p~IyAiGD~~~~~~-l~~~A~~~g~~aa~~i~g 335 (466)
T PRK07818 298 Y--MRTNVPHIYAIGDVTAKLQ-LAHVAEAQGVVAAETIAG 335 (466)
T ss_pred C--cccCCCCEEEEeecCCCcc-cHhHHHHHHHHHHHHHcC
Confidence 7 8899999999999986444 555799999999999864
No 51
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.97 E-value=3.7e-29 Score=253.98 Aligned_cols=287 Identities=20% Similarity=0.255 Sum_probs=190.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCC--------CCCCCc-cccCCCCCCc------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRL--------PTPFGL-VRSGVAPDHP------------------ 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~--------~~~gg~-~~~~~~~~~~------------------ 69 (415)
+.++|+||||||||+.||..+++. | .+|+|||+. ..+||. +..|+.|.+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 568999999999999999999997 8 999999973 456663 3333333211
Q ss_pred ----------chHHHH-----------HHHHHHhhc-cCeEEEeceEe---ceEEEecc---------cccccCEEEEcc
Q 014990 70 ----------ETKIVI-----------NQFSRVVQH-ERCSFFGNVTL---GSSVSLSE---------LRQLYHVVVLAY 115 (415)
Q Consensus 70 ----------~~~~~~-----------~~~~~~~~~-~~~~~~~~~~v---~~~v~~~~---------~~~~~d~lvlAt 115 (415)
..+.+. ......++. .+++++.+... ...+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 011111 112334444 47888877653 12233321 135899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHH
Q 014990 116 GAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAW 195 (415)
Q Consensus 116 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~ 195 (415)
|+ .|..|++||.+. +.+..+... . ...+++|+|||+|++|+|+|..+..
T Consensus 160 Gs-~p~~p~i~G~~~--~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~~~~--------------- 208 (486)
T TIGR01423 160 GS-WPQMLGIPGIEH--CISSNEAFY----L---------DEPPRRVLTVGGGFISVEFAGIFNA--------------- 208 (486)
T ss_pred CC-CCCCCCCCChhh--eechhhhhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH---------------
Confidence 99 678889998652 333322211 0 0147899999999999999987753
Q ss_pred HHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCC
Q 014990 196 TALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (415)
Q Consensus 196 ~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (415)
+... ..+|+++.+.+.+...+ ++++ .+.+.+.|.
T Consensus 209 --l~~~-G~~Vtli~~~~~il~~~-d~~~---------------------------------~~~l~~~L~--------- 242 (486)
T TIGR01423 209 --YKPR-GGKVTLCYRNNMILRGF-DSTL---------------------------------RKELTKQLR--------- 242 (486)
T ss_pred --hccC-CCeEEEEecCCcccccc-CHHH---------------------------------HHHHHHHHH---------
Confidence 0011 35899999987653221 1111 112222332
Q ss_pred CCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCccc
Q 014990 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFD 355 (415)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~ 355 (415)
++||+++++..+.++. . .++....+.+. ++ .++++|.||||+|++|+. ..+ ..
T Consensus 243 ----~~GI~i~~~~~v~~i~--~-~~~~~~~v~~~----------------~g--~~i~~D~vl~a~G~~Pn~-~~l-~l 295 (486)
T TIGR01423 243 ----ANGINIMTNENPAKVT--L-NADGSKHVTFE----------------SG--KTLDVDVVMMAIGRVPRT-QTL-QL 295 (486)
T ss_pred ----HcCCEEEcCCEEEEEE--E-cCCceEEEEEc----------------CC--CEEEcCEEEEeeCCCcCc-ccC-Cc
Confidence 5689999999888886 3 22222233321 22 279999999999999976 211 12
Q ss_pred CCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 356 NHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 356 ~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+..++.++++|.+.+|++ ++|+.|||||+|||+..+. ....|++||+.+|.+|..
T Consensus 296 ~~~gl~~~~~G~I~Vd~~--l~Ts~~~IyA~GDv~~~~~-l~~~A~~qG~~aa~ni~g 350 (486)
T TIGR01423 296 DKVGVELTKKGAIQVDEF--SRTNVPNIYAIGDVTDRVM-LTPVAINEGAAFVDTVFG 350 (486)
T ss_pred hhhCceECCCCCEecCCC--CcCCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHhC
Confidence 456788888899999987 7899999999999986544 555799999999999863
No 52
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.97 E-value=7.8e-29 Score=251.64 Aligned_cols=287 Identities=17% Similarity=0.261 Sum_probs=186.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchH------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETK------------------------ 72 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~------------------------ 72 (415)
..++|+||||||||++||.++++.| .+|+|||+.+.+||. ...++.|.+....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~ 79 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTL 79 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCcc
Confidence 3589999999999999999999999 999999987677775 3444445432111
Q ss_pred ---HHH-----------HHHHHHhhccCeEEEeceEe---ce--EEEeccc---ccccCEEEEccCCCCCCCCCCCCCCC
Q 014990 73 ---IVI-----------NQFSRVVQHERCSFFGNVTL---GS--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGEDL 130 (415)
Q Consensus 73 ---~~~-----------~~~~~~~~~~~~~~~~~~~v---~~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~~ 130 (415)
.+. ......++..+++++.+... .. .+...++ ...||+||||||+ .|. ++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~--~ipg~~~ 156 (466)
T PRK06115 80 NLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGS-EPT--PLPGVTI 156 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCC-CCC--CCCCCCC
Confidence 000 01122233446776655421 01 1222222 3589999999999 443 4566543
Q ss_pred CC--eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 131 IG--VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 131 ~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
.+ ++++.+.+. . ...+++|+|||+|.+|+|+|..+.+ .+ .+|++
T Consensus 157 ~~~~~~~~~~~~~----~---------~~~~~~vvIIGgG~ig~E~A~~l~~--------------------~G-~~Vtl 202 (466)
T PRK06115 157 DNQRIIDSTGALS----L---------PEVPKHLVVIGAGVIGLELGSVWRR--------------------LG-AQVTV 202 (466)
T ss_pred CCCeEECHHHHhC----C---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEE
Confidence 32 333333221 0 1147999999999999999999885 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.+.+.+...+. ++ ++..+.+.+. +.||+++++
T Consensus 203 ie~~~~il~~~d-~~---------------------------------~~~~l~~~l~-------------~~gV~i~~~ 235 (466)
T PRK06115 203 VEYLDRICPGTD-TE---------------------------------TAKTLQKALT-------------KQGMKFKLG 235 (466)
T ss_pred EeCCCCCCCCCC-HH---------------------------------HHHHHHHHHH-------------hcCCEEEEC
Confidence 998765422111 11 1111222222 568999999
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . .++.+ .+.+... ..++++++++|.||+++|++|+. ..+.+ +..++..+++|.
T Consensus 236 ~~V~~i~--~-~~~~v-~v~~~~~-------------~~g~~~~i~~D~vi~a~G~~pn~-~~l~~-~~~g~~~~~~G~- 295 (466)
T PRK06115 236 SKVTGAT--A-GADGV-SLTLEPA-------------AGGAAETLQADYVLVAIGRRPYT-QGLGL-ETVGLETDKRGM- 295 (466)
T ss_pred cEEEEEE--E-cCCeE-EEEEEEc-------------CCCceeEEEeCEEEEccCCcccc-ccCCc-ccccceeCCCCE-
Confidence 9998886 3 22222 2333211 02445579999999999999975 22222 345667777774
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. +...|..||+.+|++|..
T Consensus 296 ~vd~~--~~Ts~~~IyA~GD~~~~~~-la~~A~~~g~~aa~~i~~ 337 (466)
T PRK06115 296 LANDH--HRTSVPGVWVIGDVTSGPM-LAHKAEDEAVACIERIAG 337 (466)
T ss_pred EECCC--eecCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 56665 8999999999999986554 555899999999999864
No 53
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=6.3e-29 Score=252.00 Aligned_cols=283 Identities=17% Similarity=0.210 Sum_probs=188.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc----------------------------ch
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP----------------------------ET 71 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~----------------------------~~ 71 (415)
++|+||||||||+++|.++++.| .+|+|||+.+..|..+..++.|.+. ..
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQNG--KNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 48999999999999999999999 9999999986544444444333211 11
Q ss_pred HHHHH-----------HHHHHhhccCeEEEeceEe---ceE--EEeccc--ccccCEEEEccCCCCCCCCCCCCCCCCCe
Q 014990 72 KIVIN-----------QFSRVVQHERCSFFGNVTL---GSS--VSLSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGV 133 (415)
Q Consensus 72 ~~~~~-----------~~~~~~~~~~~~~~~~~~v---~~~--v~~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v 133 (415)
..+.. .....++..+++++.+... ... ++.++. ...||+||||||+ .|+.|++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs-~p~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGS-EPTELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCC-CCCCCCCCCCCCCeE
Confidence 11111 1223345567888766543 122 222222 3579999999999 677777877665556
Q ss_pred eechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 134 HSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++..+... . ...+++|+|||+|++|+|+|..+.+ .+ .+|+++.+++
T Consensus 158 ~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~g-~~Vtli~~~~ 203 (458)
T PRK06912 158 INSKHAMS----L---------PSIPSSLLIVGGGVIGCEFASIYSR--------------------LG-TKVTIVEMAP 203 (458)
T ss_pred EcchHHhC----c---------cccCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCC
Confidence 55543221 1 1146899999999999999999885 34 5799999886
Q ss_pred cccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccc
Q 014990 214 PVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDS 293 (415)
Q Consensus 214 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 293 (415)
.+. |....+ +...+.+.+. +.||+++++..+.+
T Consensus 204 ~ll-----------------------------~~~d~e-----~~~~l~~~L~-------------~~GI~i~~~~~V~~ 236 (458)
T PRK06912 204 QLL-----------------------------PGEDED-----IAHILREKLE-------------NDGVKIFTGAALKG 236 (458)
T ss_pred CcC-----------------------------ccccHH-----HHHHHHHHHH-------------HCCCEEEECCEEEE
Confidence 542 111111 1122222332 56899999988888
Q ss_pred ccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccC
Q 014990 294 FLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 294 v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~ 373 (415)
+. . ++. .+.+.. +++.++++||.||+|+|.+|+. ..+. .+..++..+++| +.+|++
T Consensus 237 i~--~--~~~--~v~~~~---------------~g~~~~i~~D~vivA~G~~p~~-~~l~-l~~~gv~~~~~g-i~Vd~~ 292 (458)
T PRK06912 237 LN--S--YKK--QALFEY---------------EGSIQEVNAEFVLVSVGRKPRV-QQLN-LEKAGVQFSNKG-ISVNEH 292 (458)
T ss_pred EE--E--cCC--EEEEEE---------------CCceEEEEeCEEEEecCCccCC-CCCC-chhcCceecCCC-EEeCCC
Confidence 85 3 222 232221 2344579999999999999965 2221 244566677667 889986
Q ss_pred CCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 374 GDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++|+.|||||+|||..++. ....|++||+.||.+|..
T Consensus 293 --~~ts~~~VyA~GD~~~~~~-la~~A~~~g~~aa~~~~g 329 (458)
T PRK06912 293 --MQTNVPHIYACGDVIGGIQ-LAHVAFHEGTTAALHASG 329 (458)
T ss_pred --eecCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 7899999999999986554 455799999999999863
No 54
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=7.7e-29 Score=251.81 Aligned_cols=284 Identities=20% Similarity=0.264 Sum_probs=186.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCC--------------------------Ccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPD--------------------------HPE 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~--------------------------~~~ 70 (415)
+.++|+||||||||+++|.+|++.+ .+|+|||+ +.+||... .++.|. ...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 4589999999999999999999999 99999999 56666432 121111 111
Q ss_pred hHHHHHHHH------------HHhhccCeEEEeceEe---ceEEEecccccccCEEEEccCCCCCCCCCCCCCC---CCC
Q 014990 71 TKIVINQFS------------RVVQHERCSFFGNVTL---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGED---LIG 132 (415)
Q Consensus 71 ~~~~~~~~~------------~~~~~~~~~~~~~~~v---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~---~~~ 132 (415)
.+++..... ...+..+++++.+... ...+.++.....||+||||||+. .|++||.. ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 222222221 2233345666654332 12233333345899999999994 55677763 333
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|+
T Consensus 156 ~~~~~~~~~----~---------~~~~k~v~VIGgG~~g~E~A~~l~~--------------------~g-~~Vtli~~~ 201 (460)
T PRK06292 156 LLTSDDAFE----L---------DKLPKSLAVIGGGVIGLELGQALSR--------------------LG-VKVTVFERG 201 (460)
T ss_pred EECchHHhC----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecC
Confidence 443332221 1 1147899999999999999999986 34 579999988
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+... .++++ ...+.+.+. ++ |+++++..+.
T Consensus 202 ~~~l~~-~d~~~---------------------------------~~~~~~~l~-------------~~-I~i~~~~~v~ 233 (460)
T PRK06292 202 DRILPL-EDPEV---------------------------------SKQAQKILS-------------KE-FKIKLGAKVT 233 (460)
T ss_pred CCcCcc-hhHHH---------------------------------HHHHHHHHh-------------hc-cEEEcCCEEE
Confidence 654211 11111 111122221 55 9999998888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . ++. ..+++.. ..++++++++|.||+++|++|+. ..+ .....++.++++|++.+|+
T Consensus 234 ~i~--~--~~~-~~v~~~~--------------~~~~~~~i~~D~vi~a~G~~p~~-~~l-~l~~~g~~~~~~g~i~vd~ 292 (460)
T PRK06292 234 SVE--K--SGD-EKVEELE--------------KGGKTETIEADYVLVATGRRPNT-DGL-GLENTGIELDERGRPVVDE 292 (460)
T ss_pred EEE--E--cCC-ceEEEEE--------------cCCceEEEEeCEEEEccCCccCC-CCC-CcHhhCCEecCCCcEeECC
Confidence 886 3 222 2333221 03445589999999999999976 222 2245677888889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 293 ~--~~ts~~~IyA~GD~~~~~~-~~~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 293 H--TQTSVPGIYAAGDVNGKPP-LLHEAADEGRIAAENAAG 330 (460)
T ss_pred C--cccCCCCEEEEEecCCCcc-chhHHHHHHHHHHHHhcC
Confidence 7 7899999999999986554 344799999999999875
No 55
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.97 E-value=7.2e-29 Score=251.87 Aligned_cols=284 Identities=17% Similarity=0.172 Sum_probs=191.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcch---------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPET--------------------------- 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~--------------------------- 71 (415)
.++|+|||+||+|+.+|..+++.+ .+|+|||+...-|.....++.|.+...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLG--ADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 368999999999999999999999 999999988643334444444432110
Q ss_pred --HH-------H----HHHHHHHhhccCeEEEeceEec-------eE--EEeccc---ccccCEEEEccCCCCCCCCCCC
Q 014990 72 --KI-------V----INQFSRVVQHERCSFFGNVTLG-------SS--VSLSEL---RQLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 72 --~~-------~----~~~~~~~~~~~~~~~~~~~~v~-------~~--v~~~~~---~~~~d~lvlAtG~~~~~~~~i~ 126 (415)
.. + ...+.+.++..+++++.+...- .. +...++ ...||+||||||+ .|+.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs-~p~~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGA-SPRILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCC-CCCCCCCC
Confidence 00 1 1123345566789988875432 12 322233 3589999999999 56666655
Q ss_pred CCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceE
Q 014990 127 GEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKV 206 (415)
Q Consensus 127 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v 206 (415)
+.+...+++..++.. . -..+++|+|||+|.+|+|+|..|.+ .+ .+|
T Consensus 158 ~~~~~~v~~~~~~~~----~---------~~~~~~vvVIGgG~ig~E~A~~l~~--------------------~g-~~V 203 (466)
T PRK07845 158 EPDGERILTWRQLYD----L---------DELPEHLIVVGSGVTGAEFASAYTE--------------------LG-VKV 203 (466)
T ss_pred CCCCceEEeehhhhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeE
Confidence 544445555443321 0 0136899999999999999999985 34 589
Q ss_pred EEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEE
Q 014990 207 YLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFV 286 (415)
Q Consensus 207 ~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 286 (415)
+++.+++.+...+ +. + +...+.+.|. ++||+++
T Consensus 204 tli~~~~~~l~~~-d~----------------------------~-----~~~~l~~~L~-------------~~gV~i~ 236 (466)
T PRK07845 204 TLVSSRDRVLPGE-DA----------------------------D-----AAEVLEEVFA-------------RRGMTVL 236 (466)
T ss_pred EEEEcCCcCCCCC-CH----------------------------H-----HHHHHHHHHH-------------HCCcEEE
Confidence 9999886543221 11 1 1111222222 5689999
Q ss_pred eccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC
Q 014990 287 FFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG 366 (415)
Q Consensus 287 ~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G 366 (415)
++..+.++. . .++.+ .+.+. +| +++++|.||+++|++|+.. .+ .....++.++++|
T Consensus 237 ~~~~v~~v~--~-~~~~~-~v~~~----------------~g--~~l~~D~vl~a~G~~pn~~-~l-~l~~~gl~~~~~G 292 (466)
T PRK07845 237 KRSRAESVE--R-TGDGV-VVTLT----------------DG--RTVEGSHALMAVGSVPNTA-GL-GLEEAGVELTPSG 292 (466)
T ss_pred cCCEEEEEE--E-eCCEE-EEEEC----------------CC--cEEEecEEEEeecCCcCCC-CC-CchhhCceECCCC
Confidence 998888885 3 22322 12221 22 3799999999999999762 11 1345678888889
Q ss_pred ceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 367 RVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 367 ~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++.+|++ ++|++|||||+|||+..+. ....|+.||+.++.+|..
T Consensus 293 ~i~Vd~~--~~Ts~~~IyA~GD~~~~~~-l~~~A~~~g~~aa~~i~g 336 (466)
T PRK07845 293 HITVDRV--SRTSVPGIYAAGDCTGVLP-LASVAAMQGRIAMYHALG 336 (466)
T ss_pred cEeECCC--cccCCCCEEEEeeccCCcc-chhHHHHHHHHHHHHHcC
Confidence 9999987 7899999999999986544 455799999999999864
No 56
>PRK13748 putative mercuric reductase; Provisional
Probab=99.97 E-value=8.6e-29 Score=257.46 Aligned_cols=282 Identities=18% Similarity=0.238 Sum_probs=186.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCC-------------------------c--
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH-------------------------P-- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~-------------------------~-- 69 (415)
..++|+||||||||+++|..|++.| .+|+|||+. .+||.. ..++.|.+ +
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 4689999999999999999999999 999999987 566642 22211110 0
Q ss_pred chHHHHHH------------HHHHhhcc-CeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCCC
Q 014990 70 ETKIVINQ------------FSRVVQHE-RCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 70 ~~~~~~~~------------~~~~~~~~-~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
....+... +...+... +++++.+...- ..+...++ ...||+||||||+ .|+.|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs-~p~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGA-SPAVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCC-CCCCCCCCCC
Confidence 11111111 11223333 67777664431 12322232 3589999999999 6888899997
Q ss_pred CCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
+...+++..+.+. . ...+++|+|||+|++|+|+|..|.+ .+ .+|++
T Consensus 253 ~~~~~~~~~~~~~---~----------~~~~~~vvViGgG~ig~E~A~~l~~--------------------~g-~~Vtl 298 (561)
T PRK13748 253 KETPYWTSTEALV---S----------DTIPERLAVIGSSVVALELAQAFAR--------------------LG-SKVTI 298 (561)
T ss_pred CccceEccHHHhh---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 6433333322211 0 1146899999999999999999986 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.|+..+ .. .+++ +...+.+.+. +.||+++++
T Consensus 299 i~~~~~l-~~-~d~~---------------------------------~~~~l~~~l~-------------~~gI~i~~~ 330 (561)
T PRK13748 299 LARSTLF-FR-EDPA---------------------------------IGEAVTAAFR-------------AEGIEVLEH 330 (561)
T ss_pred EecCccc-cc-cCHH---------------------------------HHHHHHHHHH-------------HCCCEEEcC
Confidence 9885321 11 1111 1122223332 568999999
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . +++. +.+.. .+ + ++++|.||+|+|++|+.. .+ .....++.++++|++
T Consensus 331 ~~v~~i~--~-~~~~---~~v~~---------------~~-~-~i~~D~vi~a~G~~pn~~-~l-~l~~~g~~~~~~g~i 385 (561)
T PRK13748 331 TQASQVA--H-VDGE---FVLTT---------------GH-G-ELRADKLLVATGRAPNTR-SL-ALDAAGVTVNAQGAI 385 (561)
T ss_pred CEEEEEE--e-cCCE---EEEEe---------------cC-C-eEEeCEEEEccCCCcCCC-Cc-CchhcCceECCCCCE
Confidence 8888875 3 2221 22211 11 1 599999999999999761 11 124567888888999
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 386 ~vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~g~~aa~~i~g 427 (561)
T PRK13748 386 VIDQG--MRTSVPHIYAAGDCTDQPQ-FVYVAAAAGTRAAINMTG 427 (561)
T ss_pred eECCC--cccCCCCEEEeeecCCCcc-chhHHHHHHHHHHHHHcC
Confidence 99987 8899999999999986554 444799999999999863
No 57
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.97 E-value=1.9e-29 Score=269.73 Aligned_cols=285 Identities=19% Similarity=0.225 Sum_probs=196.5
Q ss_pred EEEECCCHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCc-c-ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec--
Q 014990 22 VCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGL-V-RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG-- 96 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-- 96 (415)
|||||+|+||+++|..|++.. ++++|+|||+++.++.. . ......+....+++.....+.++..+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 689999999999999999876 45899999999876411 1 111112222333443334555667789999886542
Q ss_pred ----eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhh--HHHhcCCCCCCCCCCCCCCCCeEEEEcCCh
Q 014990 97 ----SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF--VWWYNGHPDGKNLSPDLKSTDTAVILGQGN 169 (415)
Q Consensus 97 ----~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~ 169 (415)
+.+.+.++ ...||+||||||+ .|+.|++||.+.++++....+ ...+... ...+++|+|||+|.
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs-~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~---------~~~~k~vvVVGgG~ 150 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGS-YPFILPIPGADKKGVYVFRTIEDLDAIMAM---------AQRFKKAAVIGGGL 150 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCC-CcCCCCCCCCCCCCEEEeCCHHHHHHHHHH---------hhcCCeEEEECCCH
Confidence 23444444 3589999999999 688889999987777764332 1112111 12578999999999
Q ss_pred hHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcH
Q 014990 170 VALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDE 249 (415)
Q Consensus 170 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~ 249 (415)
+|+|+|..|.+ .+ .+|+++.+.+.+.....++
T Consensus 151 ~GlE~A~~L~~--------------------~G-~~Vtvv~~~~~ll~~~ld~--------------------------- 182 (785)
T TIGR02374 151 LGLEAAVGLQN--------------------LG-MDVSVIHHAPGLMAKQLDQ--------------------------- 182 (785)
T ss_pred HHHHHHHHHHh--------------------cC-CeEEEEccCCchhhhhcCH---------------------------
Confidence 99999999986 34 5899998876432111111
Q ss_pred HhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCc
Q 014990 250 EEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGE 329 (415)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~ 329 (415)
.....+.+.+. +.||+++++..++++. . ++.+..+.+. +|
T Consensus 183 ------~~~~~l~~~l~-------------~~GV~v~~~~~v~~i~--~--~~~~~~v~~~----------------dG- 222 (785)
T TIGR02374 183 ------TAGRLLQRELE-------------QKGLTFLLEKDTVEIV--G--ATKADRIRFK----------------DG- 222 (785)
T ss_pred ------HHHHHHHHHHH-------------HcCCEEEeCCceEEEE--c--CCceEEEEEC----------------CC-
Confidence 11112222222 6689999999988886 3 4444455443 22
Q ss_pred eEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---ccchhhhhhhHHH
Q 014990 330 FEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---TGIIATNLYCAEE 406 (415)
Q Consensus 330 ~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---~~~~~~a~~~g~~ 406 (415)
+++++|+||+++|++|+. .+....++..+ |.+.+|++ ++|++|||||+|||+..+ .+....|..||+.
T Consensus 223 -~~i~~D~Vi~a~G~~Pn~----~la~~~gl~~~--ggI~Vd~~--~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~v 293 (785)
T TIGR02374 223 -SSLEADLIVMAAGIRPND----ELAVSAGIKVN--RGIIVNDS--MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKV 293 (785)
T ss_pred -CEEEcCEEEECCCCCcCc----HHHHhcCCccC--CCEEECCC--cccCCCCEEEeeecceeCCcccccHHHHHHHHHH
Confidence 279999999999999976 34455666665 55788876 889999999999998543 2455678999999
Q ss_pred HHhhccc
Q 014990 407 TVSSLSL 413 (415)
Q Consensus 407 ~a~~i~~ 413 (415)
+|.+|..
T Consensus 294 aA~ni~g 300 (785)
T TIGR02374 294 LADHICG 300 (785)
T ss_pred HHHHhcC
Confidence 9999864
No 58
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.97 E-value=2.9e-29 Score=249.99 Aligned_cols=286 Identities=14% Similarity=0.161 Sum_probs=184.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccc--cCCCCC-CcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVR--SGVAPD-HPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++|||||||+||++||..|++.+++.+|+||++++.+.- ... ...... ..... .... .+.+...+++++.++
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~i~~~~g~ 79 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-QVLP-ANWWQENNVHLHSGV 79 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-ccCC-HHHHHHCCCEEEcCC
Confidence 45689999999999999999999997779999998865421 110 000000 00000 0001 223445688888876
Q ss_pred Eec------eEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHH--HhcCCCCCCCCCCCCCCCCeEEE
Q 014990 94 TLG------SSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVW--WYNGHPDGKNLSPDLKSTDTAVI 164 (415)
Q Consensus 94 ~v~------~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~k~V~V 164 (415)
.+. +.+.+.++ ...||+||||||+ .++.+++++...+++++...... .+.. .+..+++|+|
T Consensus 80 ~V~~id~~~~~v~~~~g~~~~yd~LViATGs-~~~~~p~~~~~~~~v~~~~~~~da~~l~~---------~~~~~~~vvV 149 (396)
T PRK09754 80 TIKTLGRDTRELVLTNGESWHWDQLFIATGA-AARPLPLLDALGERCFTLRHAGDAARLRE---------VLQPERSVVI 149 (396)
T ss_pred EEEEEECCCCEEEECCCCEEEcCEEEEccCC-CCCCCCCCCcCCCCEEecCCHHHHHHHHH---------HhhcCCeEEE
Confidence 541 23444443 3589999999999 66777777665566666432211 1211 1235799999
Q ss_pred EcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCC
Q 014990 165 LGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIK 244 (415)
Q Consensus 165 VG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 244 (415)
||+|.+|+|+|..|.+ .+ .+|+++.+.+.+......+
T Consensus 150 iGgG~ig~E~A~~l~~--------------------~g-~~Vtlv~~~~~~l~~~~~~---------------------- 186 (396)
T PRK09754 150 VGAGTIGLELAASATQ--------------------RR-CKVTVIELAATVMGRNAPP---------------------- 186 (396)
T ss_pred ECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCcchhhhcCH----------------------
Confidence 9999999999999985 34 5899999876542111111
Q ss_pred CCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCccee
Q 014990 245 SPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYA 324 (415)
Q Consensus 245 ~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~ 324 (415)
.....+.+.+. +.||+++++..+.++. . ++.+ .+.+.
T Consensus 187 -----------~~~~~l~~~l~-------------~~GV~i~~~~~V~~i~--~--~~~~-~v~l~-------------- 223 (396)
T PRK09754 187 -----------PVQRYLLQRHQ-------------QAGVRILLNNAIEHVV--D--GEKV-ELTLQ-------------- 223 (396)
T ss_pred -----------HHHHHHHHHHH-------------HCCCEEEeCCeeEEEE--c--CCEE-EEEEC--------------
Confidence 11111222222 5689999998888885 2 2221 22221
Q ss_pred ccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc--c------c
Q 014990 325 VGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT--G------I 396 (415)
Q Consensus 325 ~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~--~------~ 396 (415)
+| ++++||.||+++|.+|+. .+....++..+ +.+.+|++ ++|+.|||||+|||+..+. + .
T Consensus 224 --~g--~~i~aD~Vv~a~G~~pn~----~l~~~~gl~~~--~gi~vd~~--~~ts~~~IyA~GD~a~~~~~~g~~~~~~~ 291 (396)
T PRK09754 224 --SG--ETLQADVVIYGIGISAND----QLAREANLDTA--NGIVIDEA--CRTCDPAIFAGGDVAITRLDNGALHRCES 291 (396)
T ss_pred --CC--CEEECCEEEECCCCChhh----HHHHhcCCCcC--CCEEECCC--CccCCCCEEEccceEeeeCCCCCEEEECc
Confidence 23 269999999999999975 24344565543 45889987 7899999999999984221 1 1
Q ss_pred hhhhhhhHHHHHhhccc
Q 014990 397 IATNLYCAEETVSSLSL 413 (415)
Q Consensus 397 ~~~a~~~g~~~a~~i~~ 413 (415)
...|+.||+.||.||..
T Consensus 292 ~~~A~~qg~~aa~ni~g 308 (396)
T PRK09754 292 WENANNQAQIAAAAMLG 308 (396)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 24799999999999864
No 59
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=2.2e-28 Score=248.98 Aligned_cols=287 Identities=18% Similarity=0.217 Sum_probs=184.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~--------------------------~ 70 (415)
+.++|+||||||||++||.+|++.| .+|+|||+. .+||.. .+++.|.+. .
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 5789999999999999999999999 999999986 456543 333333211 1
Q ss_pred hHH-------HHH----HHHHHhhccCeEEEeceEec------------eEEEeccc---ccccCEEEEccCCCCCCCCC
Q 014990 71 TKI-------VIN----QFSRVVQHERCSFFGNVTLG------------SSVSLSEL---RQLYHVVVLAYGAESDRALG 124 (415)
Q Consensus 71 ~~~-------~~~----~~~~~~~~~~~~~~~~~~v~------------~~v~~~~~---~~~~d~lvlAtG~~~~~~~~ 124 (415)
... +.+ ....++++.+++++.+.... ..+...++ ...||+||||||+ .|+.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs-~p~~~p 158 (472)
T PRK05976 80 FAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS-RPVELP 158 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC-CCCCCC
Confidence 111 111 22344566688888876431 12333232 3589999999999 554433
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
....+...+++..+... + ...+++|+|||+|++|+|+|..|.+ .+ .
T Consensus 159 ~~~~~~~~~~~~~~~~~-~------------~~~~~~vvIIGgG~~G~E~A~~l~~--------------------~g-~ 204 (472)
T PRK05976 159 GLPFDGEYVISSDEALS-L------------ETLPKSLVIVGGGVIGLEWASMLAD--------------------FG-V 204 (472)
T ss_pred CCCCCCceEEcchHhhC-c------------cccCCEEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 22222223444333221 0 0136899999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.|.+.+. |....+ +...+.+.+. +.||+
T Consensus 205 ~Vtli~~~~~il-----------------------------~~~~~~-----~~~~l~~~l~-------------~~gI~ 237 (472)
T PRK05976 205 EVTVVEAADRIL-----------------------------PTEDAE-----LSKEVARLLK-------------KLGVR 237 (472)
T ss_pred eEEEEEecCccC-----------------------------CcCCHH-----HHHHHHHHHH-------------hcCCE
Confidence 899999886542 111111 1111222222 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. .+.++.+..+.. .+|+.+++++|.||+|+|.+|+. ..+.+ +..++.. +
T Consensus 238 i~~~~~v~~i~--~~~~~~~~~~~~----------------~~g~~~~i~~D~vi~a~G~~p~~-~~l~l-~~~~~~~-~ 296 (472)
T PRK05976 238 VVTGAKVLGLT--LKKDGGVLIVAE----------------HNGEEKTLEADKVLVSVGRRPNT-EGIGL-ENTDIDV-E 296 (472)
T ss_pred EEeCcEEEEEE--EecCCCEEEEEE----------------eCCceEEEEeCEEEEeeCCccCC-CCCCc-hhcCcee-c
Confidence 99998888875 201232221111 13444579999999999999975 22211 2334444 4
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|.+.+|+. ++|+.|||||+|||+.++. ....|+.||+.+|.+|..
T Consensus 297 ~g~i~Vd~~--l~ts~~~IyAiGD~~~~~~-~~~~A~~~g~~aa~~i~g 342 (472)
T PRK05976 297 GGFIQIDDF--CQTKERHIYAIGDVIGEPQ-LAHVAMAEGEMAAEHIAG 342 (472)
T ss_pred CCEEEECCC--cccCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 689999987 7899999999999986554 455799999999998864
No 60
>PRK14694 putative mercuric reductase; Provisional
Probab=99.97 E-value=2.4e-28 Score=248.37 Aligned_cols=282 Identities=16% Similarity=0.229 Sum_probs=183.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCC-------------------------c-
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDH-------------------------P- 69 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~-------------------------~- 69 (415)
...++|+||||||||+++|..|++.| .+|+|||+.. +||.+ ..|+.|.+ +
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~ 80 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERG--ARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPV 80 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCc
Confidence 46889999999999999999999999 9999999874 55522 22211111 0
Q ss_pred -chHHHHHH-------H-----HHHhhc-cCeEEEeceEec-----eEEEeccc---ccccCEEEEccCCCCCCCCCCCC
Q 014990 70 -ETKIVINQ-------F-----SRVVQH-ERCSFFGNVTLG-----SSVSLSEL---RQLYHVVVLAYGAESDRALGIPG 127 (415)
Q Consensus 70 -~~~~~~~~-------~-----~~~~~~-~~~~~~~~~~v~-----~~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g 127 (415)
....+... + ...++. .+++++.+.... ..++..++ ...||+||||||+ .|+.|++||
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs-~p~~p~i~G 159 (468)
T PRK14694 81 VDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGA-RPAEPPVPG 159 (468)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCC-CCCCCCCCC
Confidence 11122211 1 112322 367777665431 23443333 3589999999999 788889999
Q ss_pred CCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEE
Q 014990 128 EDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (415)
Q Consensus 128 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (415)
.+...+.+..+... . ...+++|+|||+|++|+|+|..|.+ .+ .+|+
T Consensus 160 ~~~~~~~~~~~~~~----l---------~~~~~~vvViG~G~~G~E~A~~l~~--------------------~g-~~Vt 205 (468)
T PRK14694 160 LAETPYLTSTSALE----L---------DHIPERLLVIGASVVALELAQAFAR--------------------LG-SRVT 205 (468)
T ss_pred CCCCceEcchhhhc----h---------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEE
Confidence 76433333322110 0 0146899999999999999999986 34 5899
Q ss_pred EEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEe
Q 014990 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (415)
Q Consensus 208 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 287 (415)
++.+...+ |.... .+...+.+.+. +.||++++
T Consensus 206 lv~~~~~l------------------------------~~~~~-----~~~~~l~~~l~-------------~~GI~v~~ 237 (468)
T PRK14694 206 VLARSRVL------------------------------SQEDP-----AVGEAIEAAFR-------------REGIEVLK 237 (468)
T ss_pred EEECCCCC------------------------------CCCCH-----HHHHHHHHHHH-------------hCCCEEEe
Confidence 99864321 11111 11112222222 56899999
Q ss_pred ccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCc
Q 014990 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (415)
Q Consensus 288 ~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~ 367 (415)
+..+.++. . ++.. +.+.. .+. ++++|.||+|+|.+|+.. .+. ....++.. ++|+
T Consensus 238 ~~~v~~i~--~--~~~~--~~v~~---------------~~~--~i~~D~vi~a~G~~pn~~-~l~-l~~~g~~~-~~G~ 291 (468)
T PRK14694 238 QTQASEVD--Y--NGRE--FILET---------------NAG--TLRAEQLLVATGRTPNTE-NLN-LESIGVET-ERGA 291 (468)
T ss_pred CCEEEEEE--E--cCCE--EEEEE---------------CCC--EEEeCEEEEccCCCCCcC-CCC-chhcCccc-CCCe
Confidence 98888875 3 3221 21111 111 599999999999999762 111 23445654 4789
Q ss_pred eeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 368 i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+.+|++ ++|+.|||||+|||+..+. .+..|+.||+.||.+|..
T Consensus 292 i~vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~G~~aa~~i~~ 334 (468)
T PRK14694 292 IRIDEH--LQTTVSGIYAAGDCTDQPQ-FVYVAAAGGSRAAINMTG 334 (468)
T ss_pred EeeCCC--cccCCCCEEEEeecCCCcc-cHHHHHHHHHHHHHHhcC
Confidence 999987 8899999999999986555 444799999999999853
No 61
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.97 E-value=2e-28 Score=248.82 Aligned_cols=285 Identities=18% Similarity=0.218 Sum_probs=188.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc-ccCCCCCCcc--------------------------h
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV-RSGVAPDHPE--------------------------T 71 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~-~~~~~~~~~~--------------------------~ 71 (415)
.++|+||||||||+++|.+|++.| .+|+|||+ +.+||.. .++..|.+.. .
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDW 77 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCH
Confidence 379999999999999999999999 99999999 6677742 2333332110 0
Q ss_pred HHHH-----------HHHHHHhhccCeEEEeceEec---e--EEEecc--cccccCEEEEccCCCCCCCCCCC-CCCCCC
Q 014990 72 KIVI-----------NQFSRVVQHERCSFFGNVTLG---S--SVSLSE--LRQLYHVVVLAYGAESDRALGIP-GEDLIG 132 (415)
Q Consensus 72 ~~~~-----------~~~~~~~~~~~~~~~~~~~v~---~--~v~~~~--~~~~~d~lvlAtG~~~~~~~~i~-g~~~~~ 132 (415)
..+. ......++..+++++.+.... . .+...+ ....||+||||||+ .|+.|++| +.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~-~p~~~~~~~~~~~~~ 156 (461)
T TIGR01350 78 EKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGS-RPRSLPGPFDFDGEV 156 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCC-CCCCCCCCCCCCCce
Confidence 0110 111233445567777665431 1 222222 23579999999999 67777776 333223
Q ss_pred eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 133 VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 133 v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
+++..+... . ...+++|+|||+|.+|+|+|..|.+ .+ .+|+++.|+
T Consensus 157 ~~~~~~~~~----~---------~~~~~~vvViGgG~~g~e~A~~l~~--------------------~g-~~Vtli~~~ 202 (461)
T TIGR01350 157 VITSTGALN----L---------KEVPESLVIIGGGVIGIEFASIFAS--------------------LG-SKVTVIEML 202 (461)
T ss_pred EEcchHHhc----c---------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEEcC
Confidence 444433221 0 1146899999999999999999986 34 589999988
Q ss_pred CcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccc
Q 014990 213 GPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPD 292 (415)
Q Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~ 292 (415)
+.+.. ..+. .+...+.+.+. +.||+++++..+.
T Consensus 203 ~~~l~-~~~~---------------------------------~~~~~~~~~l~-------------~~gi~i~~~~~v~ 235 (461)
T TIGR01350 203 DRILP-GEDA---------------------------------EVSKVVAKALK-------------KKGVKILTNTKVT 235 (461)
T ss_pred CCCCC-CCCH---------------------------------HHHHHHHHHHH-------------HcCCEEEeCCEEE
Confidence 65321 1111 11112222222 5689999999888
Q ss_pred cccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeecc
Q 014990 293 SFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNI 372 (415)
Q Consensus 293 ~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~ 372 (415)
++. . +++.+. +... .|+.+++++|.||+|+|++|+. ..+ +....++..+++|.+.+|+
T Consensus 236 ~i~--~-~~~~v~-v~~~----------------~g~~~~i~~D~vi~a~G~~p~~-~~l-~~~~~gl~~~~~g~i~vd~ 293 (461)
T TIGR01350 236 AVE--K-NDDQVV-YENK----------------GGETETLTGEKVLVAVGRKPNT-EGL-GLENLGVELDERGRIVVDE 293 (461)
T ss_pred EEE--E-eCCEEE-EEEe----------------CCcEEEEEeCEEEEecCCcccC-CCC-CcHhhCceECCCCcEeeCC
Confidence 886 3 233221 2211 2333479999999999999965 221 2355677888889999998
Q ss_pred CCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 373 SGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 373 ~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ ++|+.|+|||+|||+.++. ....|+.||+.+|.+|..
T Consensus 294 ~--l~t~~~~IyaiGD~~~~~~-~~~~A~~~g~~aa~~i~~ 331 (461)
T TIGR01350 294 Y--MRTNVPGIYAIGDVIGGPM-LAHVASHEGIVAAENIAG 331 (461)
T ss_pred C--cccCCCCEEEeeecCCCcc-cHHHHHHHHHHHHHHHcC
Confidence 6 7899999999999986554 455799999999999864
No 62
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.97 E-value=2.9e-29 Score=247.39 Aligned_cols=288 Identities=15% Similarity=0.172 Sum_probs=186.0
Q ss_pred eEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCc-cccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 21 RVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
+|||||||+||+++|.+|+++ .++.+|+|||+++...-. .......+.....++...+.++++..+++++.+..+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 599999999999999999765 356999999998763211 11111122223445555667777778899887765432
Q ss_pred ----EEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeechh---hHH---HhcCCCCCCCCCCCCCCCCeEEEEc
Q 014990 98 ----SVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSARE---FVW---WYNGHPDGKNLSPDLKSTDTAVILG 166 (415)
Q Consensus 98 ----~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~---~~~---~~~~~~~~~~~~~~~~~~k~V~VVG 166 (415)
.+.++++ ..+||+||||||+ .+..|++||.. ++++.... +.. .+..... ....+++|+|||
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~-~~~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~vvVvG 152 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGS-TTPLSGVEGAA-DLAVPVKPIENFLARWEALLESAD------APPGTKRLAVVG 152 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCC-CCCCCCCCccc-ccccccCCHHHHHHHHHHHHHHHh------cCCCCceEEEEC
Confidence 3444444 3589999999999 67788899843 33332211 111 1111000 011467999999
Q ss_pred CChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc-ceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCC
Q 014990 167 QGNVALDVARILLRPTEELATTDIASYAWTALEGSSI-RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKS 245 (415)
Q Consensus 167 ~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 245 (415)
+|.+|+|+|..|.+ .++..+. .+|+++ +.+.+...+.
T Consensus 153 ~G~~g~E~A~~l~~----------------~~~~~g~~~~V~li-~~~~~l~~~~------------------------- 190 (364)
T TIGR03169 153 GGAAGVEIALALRR----------------RLPKRGLRGQVTLI-AGASLLPGFP------------------------- 190 (364)
T ss_pred CCHHHHHHHHHHHH----------------HHHhcCCCceEEEE-eCCcccccCC-------------------------
Confidence 99999999999974 1111232 478888 4433211111
Q ss_pred CCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceec
Q 014990 246 PTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAV 325 (415)
Q Consensus 246 p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~ 325 (415)
+..+..+.+.+. +.+|+++.+..+.++. . + .+.+.
T Consensus 191 ---------~~~~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~----~v~~~--------------- 225 (364)
T TIGR03169 191 ---------AKVRRLVLRLLA-------------RRGIEVHEGAPVTRGP--D--G----ALILA--------------- 225 (364)
T ss_pred ---------HHHHHHHHHHHH-------------HCCCEEEeCCeeEEEc--C--C----eEEeC---------------
Confidence 111122223332 5689999988877774 2 2 23321
Q ss_pred cCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCc-ccCCeeeeeccccCC----ccchhhh
Q 014990 326 GTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQ-VENGLYVCGWLKRGP----TGIIATN 400 (415)
Q Consensus 326 ~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t-~~p~vfaiGD~~~~~----~~~~~~a 400 (415)
+| +++++|.||||+|.+|++ +....++.++++|++.+|++ +++ ++|||||+|||+..+ ......|
T Consensus 226 -~g--~~i~~D~vi~a~G~~p~~-----~l~~~gl~~~~~g~i~vd~~--l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A 295 (364)
T TIGR03169 226 -DG--RTLPADAILWATGARAPP-----WLAESGLPLDEDGFLRVDPT--LQSLSHPHVFAAGDCAVITDAPRPKAGVYA 295 (364)
T ss_pred -CC--CEEecCEEEEccCCChhh-----HHHHcCCCcCCCCeEEECCc--cccCCCCCEEEeeeeeecCCCCCCCchHHH
Confidence 22 379999999999999965 22345667777899999986 565 999999999998422 2233469
Q ss_pred hhhHHHHHhhccc
Q 014990 401 LYCAEETVSSLSL 413 (415)
Q Consensus 401 ~~~g~~~a~~i~~ 413 (415)
+.||+.+|.||.+
T Consensus 296 ~~~g~~~a~ni~~ 308 (364)
T TIGR03169 296 VRQAPILAANLRA 308 (364)
T ss_pred HHhHHHHHHHHHH
Confidence 9999999999864
No 63
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.97 E-value=3.2e-28 Score=247.57 Aligned_cols=286 Identities=16% Similarity=0.169 Sum_probs=187.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCc-cccCCCCCCc--------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDHP-------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~-~~~~~~~~~~-------------------- 69 (415)
.++|+|||+||||+.+|..+++.| .+|+|||+.. ..||. +..++.|.+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 479999999999999999999999 9999999731 35553 3333333211
Q ss_pred -------chH-------HH----HHHHHHHhhccCeEEEeceEe---ceEEEec--c---cccccCEEEEccCCCCCCCC
Q 014990 70 -------ETK-------IV----INQFSRVVQHERCSFFGNVTL---GSSVSLS--E---LRQLYHVVVLAYGAESDRAL 123 (415)
Q Consensus 70 -------~~~-------~~----~~~~~~~~~~~~~~~~~~~~v---~~~v~~~--~---~~~~~d~lvlAtG~~~~~~~ 123 (415)
... +. .......++..+++++.+... ...+.+. + ....||+||||||+ .|+.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs-~p~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGE-RPRYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCC-CCCCC
Confidence 000 01 112234456667888766543 1123321 2 13589999999999 67888
Q ss_pred CCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc
Q 014990 124 GIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI 203 (415)
Q Consensus 124 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (415)
++||.+. ...++.+... . ...+++++|||+|++|+|+|..|.+ .+
T Consensus 159 ~ipG~~~-~~~~~~~~~~----~---------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G- 203 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFS----L---------PYCPGKTLVVGASYVALECAGFLAG--------------------IG- 203 (484)
T ss_pred CCCCccc-eeecHHHhhc----c---------cccCCCEEEECCCHHHHHHHHHHHH--------------------hC-
Confidence 8998742 2233322221 1 0135789999999999999999986 34
Q ss_pred ceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeE
Q 014990 204 RKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQREL 283 (415)
Q Consensus 204 ~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 283 (415)
.+|+++.|. .+. +..++++ ...+.+.|. +.||
T Consensus 204 ~~Vtli~~~-~~l-~~~d~~~---------------------------------~~~l~~~L~-------------~~gV 235 (484)
T TIGR01438 204 LDVTVMVRS-ILL-RGFDQDC---------------------------------ANKVGEHME-------------EHGV 235 (484)
T ss_pred CcEEEEEec-ccc-cccCHHH---------------------------------HHHHHHHHH-------------HcCC
Confidence 589999874 221 1111111 112222332 5689
Q ss_pred EEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcccc
Q 014990 284 HFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPN 363 (415)
Q Consensus 284 ~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~ 363 (415)
+++++..+.++. . .++.+ .+++.+ .++.+++++|.||||+|++|+. ..+. .+..++.++
T Consensus 236 ~i~~~~~v~~v~--~-~~~~~-~v~~~~---------------~~~~~~i~~D~vl~a~G~~pn~-~~l~-l~~~gv~~~ 294 (484)
T TIGR01438 236 KFKRQFVPIKVE--Q-IEAKV-KVTFTD---------------STNGIEEEYDTVLLAIGRDACT-RKLN-LENVGVKIN 294 (484)
T ss_pred EEEeCceEEEEE--E-cCCeE-EEEEec---------------CCcceEEEeCEEEEEecCCcCC-CcCC-cccccceec
Confidence 999998888876 3 22222 233321 1113479999999999999976 2222 245677776
Q ss_pred C-CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 364 I-RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 364 ~-~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+ +|.+.+|+. ++|+.|||||+|||+.........|+.||+.+|.+|..
T Consensus 295 ~~~G~I~Vd~~--~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 295 KKTGKIPADEE--EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CcCCeEecCCC--cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 5 489999986 88999999999999864444566899999999999863
No 64
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.97 E-value=3.2e-28 Score=247.78 Aligned_cols=289 Identities=17% Similarity=0.227 Sum_probs=187.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC------CCCCCCc-cccCCCCCCc---------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR------LPTPFGL-VRSGVAPDHP--------------------- 69 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~------~~~~gg~-~~~~~~~~~~--------------------- 69 (415)
..++|+||||||||++||.++++.+ .+|+|||+ ...+||. ..+++.|.+.
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 4689999999999999999999999 99999998 2344543 2222222100
Q ss_pred ------chHHHH-----------HHHHHHhhccCeEEEeceEe-------ceEEEecc---cccccCEEEEccCCCCCCC
Q 014990 70 ------ETKIVI-----------NQFSRVVQHERCSFFGNVTL-------GSSVSLSE---LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 70 ------~~~~~~-----------~~~~~~~~~~~~~~~~~~~v-------~~~v~~~~---~~~~~d~lvlAtG~~~~~~ 122 (415)
....+. .....+++..+++++.+... ...+.+.. ....||+||||||+ .|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs-~p~~ 159 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGS-EPRH 159 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCC-CCCC
Confidence 001111 12233445567887765542 12343321 24589999999999 5554
Q ss_pred CCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 123 LGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 123 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
++..+.+...++++..... . ...+++|+|||+|.+|+|+|..|.+ .+
T Consensus 160 ~p~~~~~~~~~~~~~~~~~----~---------~~~~~~vvVvGgG~~g~E~A~~l~~--------------------~g 206 (475)
T PRK06327 160 LPGVPFDNKIILDNTGALN----F---------TEVPKKLAVIGAGVIGLELGSVWRR--------------------LG 206 (475)
T ss_pred CCCCCCCCceEECcHHHhc----c---------cccCCeEEEECCCHHHHHHHHHHHH--------------------cC
Confidence 3322222333444332221 1 0146899999999999999998885 34
Q ss_pred cceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCcee
Q 014990 203 IRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRE 282 (415)
Q Consensus 203 ~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (415)
.+|+++.|++.+... .++++ ...+.+.+. +.|
T Consensus 207 -~~Vtli~~~~~~l~~-~d~~~---------------------------------~~~~~~~l~-------------~~g 238 (475)
T PRK06327 207 -AEVTILEALPAFLAA-ADEQV---------------------------------AKEAAKAFT-------------KQG 238 (475)
T ss_pred -CeEEEEeCCCccCCc-CCHHH---------------------------------HHHHHHHHH-------------HcC
Confidence 589999988654211 11111 111222222 568
Q ss_pred EEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccc
Q 014990 283 LHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVP 362 (415)
Q Consensus 283 v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~ 362 (415)
|+++++..+.++. . .++.+ .+.+.+. +|+.+++++|.|++++|++|+. ..+ ..+..++.+
T Consensus 239 i~i~~~~~v~~i~--~-~~~~v-~v~~~~~--------------~g~~~~i~~D~vl~a~G~~p~~-~~l-~~~~~g~~~ 298 (475)
T PRK06327 239 LDIHLGVKIGEIK--T-GGKGV-SVAYTDA--------------DGEAQTLEVDKLIVSIGRVPNT-DGL-GLEAVGLKL 298 (475)
T ss_pred cEEEeCcEEEEEE--E-cCCEE-EEEEEeC--------------CCceeEEEcCEEEEccCCccCC-CCC-CcHhhCcee
Confidence 9999999998886 3 22322 2333220 2444579999999999999975 211 224567788
Q ss_pred cCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 363 NIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 363 ~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+++|.+.+|++ ++|+.|||||+|||+..+. ....|+.||..+|.+|..
T Consensus 299 ~~~G~i~vd~~--~~Ts~~~VyA~GD~~~~~~-~~~~A~~~G~~aa~~i~g 346 (475)
T PRK06327 299 DERGFIPVDDH--CRTNVPNVYAIGDVVRGPM-LAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCCeEeECCC--CccCCCCEEEEEeccCCcc-hHHHHHHHHHHHHHHHcC
Confidence 88899999987 7899999999999986555 445799999999999864
No 65
>PRK14727 putative mercuric reductase; Provisional
Probab=99.96 E-value=6.5e-28 Score=245.71 Aligned_cols=284 Identities=16% Similarity=0.215 Sum_probs=186.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc-cCCCCCC------------------------cc-
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR-SGVAPDH------------------------PE- 70 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~-~~~~~~~------------------------~~- 70 (415)
+.+++|+|||+||||+++|..|++.| .+|+|||+.+.+||.+. .++.|.+ +.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 46789999999999999999999999 99999999877776432 2211210 00
Q ss_pred -hHHHH-------HH-----HHHHhhc-cCeEEEeceEe---ce--EEEeccc---ccccCEEEEccCCCCCCCCCCCCC
Q 014990 71 -TKIVI-------NQ-----FSRVVQH-ERCSFFGNVTL---GS--SVSLSEL---RQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 71 -~~~~~-------~~-----~~~~~~~-~~~~~~~~~~v---~~--~v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
...+. .. +...++. .+++++.+... .. .+...++ +..||+||||||+ .|+.|++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs-~p~~p~i~G~ 170 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGS-TPTIPPIPGL 170 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCC-CCCCCCCCCc
Confidence 11111 11 1222332 26777665432 11 2322232 3589999999999 7888899997
Q ss_pred CCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEE
Q 014990 129 DLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYL 208 (415)
Q Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l 208 (415)
+.....+..+.+. . ...+++|+|||+|++|+|+|..+.+ .+ .+|++
T Consensus 171 ~~~~~~~~~~~l~---~----------~~~~k~vvVIGgG~iG~E~A~~l~~--------------------~G-~~Vtl 216 (479)
T PRK14727 171 MDTPYWTSTEALF---S----------DELPASLTVIGSSVVAAEIAQAYAR--------------------LG-SRVTI 216 (479)
T ss_pred CccceecchHHhc---c----------ccCCCeEEEECCCHHHHHHHHHHHH--------------------cC-CEEEE
Confidence 5433333222111 0 0136899999999999999999985 34 58999
Q ss_pred EeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEec
Q 014990 209 VGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFF 288 (415)
Q Consensus 209 ~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 288 (415)
+.|...+ . ..++++ ...+.+.+. +.||+++++
T Consensus 217 v~~~~~l-~-~~d~~~---------------------------------~~~l~~~L~-------------~~GV~i~~~ 248 (479)
T PRK14727 217 LARSTLL-F-REDPLL---------------------------------GETLTACFE-------------KEGIEVLNN 248 (479)
T ss_pred EEcCCCC-C-cchHHH---------------------------------HHHHHHHHH-------------hCCCEEEcC
Confidence 9875321 1 111111 111222222 568999998
Q ss_pred cccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCce
Q 014990 289 RKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRV 368 (415)
Q Consensus 289 ~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i 368 (415)
..+.++. . .++ .+.+.. . ++ ++++|.||+|+|++|+.. .+. ....++.++++|.+
T Consensus 249 ~~V~~i~--~-~~~---~~~v~~---------------~-~g-~i~aD~VlvA~G~~pn~~-~l~-l~~~g~~~~~~G~i 303 (479)
T PRK14727 249 TQASLVE--H-DDN---GFVLTT---------------G-HG-ELRAEKLLISTGRHANTH-DLN-LEAVGVTTDTSGAI 303 (479)
T ss_pred cEEEEEE--E-eCC---EEEEEE---------------c-CC-eEEeCEEEEccCCCCCcc-CCC-chhhCceecCCCCE
Confidence 8888775 3 222 122211 1 11 589999999999999762 111 24457788888999
Q ss_pred eeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 369 LKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 369 ~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.+|++ ++|+.|||||+|||+..+. ....|+.||+.||.+|..
T Consensus 304 ~Vd~~--~~Ts~~~IyA~GD~~~~~~-~~~~A~~~G~~aa~~i~g 345 (479)
T PRK14727 304 VVNPA--METSAPDIYAAGDCSDLPQ-FVYVAAAAGSRAGINMTG 345 (479)
T ss_pred EECCC--eecCCCCEEEeeecCCcch-hhhHHHHHHHHHHHHHcC
Confidence 99987 8899999999999986554 344799999999999864
No 66
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.96 E-value=9.4e-28 Score=252.26 Aligned_cols=316 Identities=19% Similarity=0.203 Sum_probs=213.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC----------------------------CCCCccccCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP----------------------------TPFGLVRSGVAPD 67 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~----------------------------~~gg~~~~~~~~~ 67 (415)
.++.++|+||||||||++||.+|++.| ++|++||+.+ .+||...|++ |
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p- 455 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T- 455 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-
Confidence 357899999999999999999999999 9999999852 2788999999 4
Q ss_pred CcchHHHHHHHHHHhhc-cCeEEEeceEeceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcC
Q 014990 68 HPETKIVINQFSRVVQH-ERCSFFGNVTLGSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNG 145 (415)
Q Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~ 145 (415)
+.++++.++.+...++. .+++++.++.++.+++.++.. ..||+|+||||++.++.+++||.+.++++++.+|+..++.
T Consensus 456 ~R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~ 535 (1028)
T PRK06567 456 VRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQS 535 (1028)
T ss_pred ccchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhh
Confidence 56677776665555543 357888899999888887754 5799999999997799999999999999999998877643
Q ss_pred CCCC-CCCCCCCCCCCeEEEEcCChhHHHHHHHHhc----Ccccc-----------cccCchhHHHHHhhcCCcc-----
Q 014990 146 HPDG-KNLSPDLKSTDTAVILGQGNVALDVARILLR----PTEEL-----------ATTDIASYAWTALEGSSIR----- 204 (415)
Q Consensus 146 ~~~~-~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~----- 204 (415)
.... .....++..+++|+|||||++|+|+|..... +.+.+ -..+|++.+..+++..+..
T Consensus 536 ~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~ 615 (1028)
T PRK06567 536 GGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEE 615 (1028)
T ss_pred cccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccch
Confidence 2111 1112223357899999999999999985432 00000 1234555555555553311
Q ss_pred ---------eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCC
Q 014990 205 ---------KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQ 275 (415)
Q Consensus 205 ---------~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (415)
.|+++.|+... .+|....+.. .+..++
T Consensus 616 v~~l~~~~G~VtIvYRr~~~----------------------------empA~~~~~e------Ev~~A~---------- 651 (1028)
T PRK06567 616 LRKVFNKLGGATVYYRGRLQ----------------------------DSPAYKLNHE------ELIYAL---------- 651 (1028)
T ss_pred hhhhhccCCceEEEecCChh----------------------------hCCCCCCCHH------HHHHHH----------
Confidence 15555555432 2454311111 011111
Q ss_pred CCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee-----cC---C-C--CCcceecc-CCceEEEecCeeEEeec
Q 014990 276 PMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL-----KG---G-G--PGKQYAVG-TGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 276 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~-----~~---~-~--~g~~~~~~-~g~~~~i~~D~vi~atG 343 (415)
++||.+++...|.++. .++++++.++++..... .+ . + .|..-..+ .+++.+++||.||+|+|
T Consensus 652 ----eEGV~f~~~~~P~~i~--~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G 725 (1028)
T PRK06567 652 ----ALGVDFKENMQPLRIN--VDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIG 725 (1028)
T ss_pred ----HcCcEEEecCCcEEEE--ecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecc
Confidence 7899999999999997 53468999999876541 11 0 0 12222222 34557899999999999
Q ss_pred cCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 344 YKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 344 ~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
..|+.. +. ..+. + +-++.+++|+- .++ .||.+|+.++.+|.+
T Consensus 726 ~~~~~~----~~-------------~~~~-s-~~~d~~~~f~G--------tvv-~A~as~k~~~~~i~~ 767 (1028)
T PRK06567 726 IENNTQ----FD-------------EDKY-S-YFGDCNPKYSG--------SVV-KALASSKEGYDAINK 767 (1028)
T ss_pred cCCccc----cc-------------cccc-c-cccCCCCcccc--------HHH-HHHHHHHhHHHHHHH
Confidence 999762 11 0011 1 33455666654 345 699999999999864
No 67
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.96 E-value=3e-27 Score=241.50 Aligned_cols=282 Identities=16% Similarity=0.205 Sum_probs=181.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--------CCCCc-cccCCCCCC---------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--------TPFGL-VRSGVAPDH--------------------- 68 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--------~~gg~-~~~~~~~~~--------------------- 68 (415)
.++|+||||||||++||.++++.| .+|+|||+.. .+||. +..++.|.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 589999999999999999999999 9999999631 36664 333333421
Q ss_pred -----cchHHHHHHHHHH-----------hhccCeEEEeceEe---ceEEEecc----cccccCEEEEccCCCCCCCC-C
Q 014990 69 -----PETKIVINQFSRV-----------VQHERCSFFGNVTL---GSSVSLSE----LRQLYHVVVLAYGAESDRAL-G 124 (415)
Q Consensus 69 -----~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v---~~~v~~~~----~~~~~d~lvlAtG~~~~~~~-~ 124 (415)
....++.+++.+. ++..+++++.+... .+.+...+ ....||+||||||+ .|+.| +
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs-~p~~p~~ 161 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGG-RPSIPED 161 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCC-CCCCCCC
Confidence 1112222222222 22245555544322 12233221 23589999999999 56665 4
Q ss_pred CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc
Q 014990 125 IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR 204 (415)
Q Consensus 125 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (415)
+||.+.. ..++.++.. + ...+++|+|||+|.+|+|+|..|.+ .+ .
T Consensus 162 i~G~~~~-~~~~~~~~~-~------------~~~~~~vvIIGgG~iG~E~A~~l~~--------------------~G-~ 206 (499)
T PTZ00052 162 VPGAKEY-SITSDDIFS-L------------SKDPGKTLIVGASYIGLETAGFLNE--------------------LG-F 206 (499)
T ss_pred CCCccce-eecHHHHhh-h------------hcCCCeEEEECCCHHHHHHHHHHHH--------------------cC-C
Confidence 8886422 233333221 0 0146799999999999999999986 34 5
Q ss_pred eEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEE
Q 014990 205 KVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELH 284 (415)
Q Consensus 205 ~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 284 (415)
+|+++.++.. .. ..++++ ...+.+.|. +.||+
T Consensus 207 ~Vtli~~~~~-l~-~~d~~~---------------------------------~~~l~~~l~-------------~~GV~ 238 (499)
T PTZ00052 207 DVTVAVRSIP-LR-GFDRQC---------------------------------SEKVVEYMK-------------EQGTL 238 (499)
T ss_pred cEEEEEcCcc-cc-cCCHHH---------------------------------HHHHHHHHH-------------HcCCE
Confidence 7999987532 11 111111 111222222 56899
Q ss_pred EEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccC
Q 014990 285 FVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNI 364 (415)
Q Consensus 285 ~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~ 364 (415)
++++..+.++. . .++.+ .+.+. +|+ ++++|.|||++|++|+. ..+. .+..++.+++
T Consensus 239 i~~~~~v~~v~--~-~~~~~-~v~~~----------------~g~--~i~~D~vl~a~G~~pn~-~~l~-l~~~g~~~~~ 294 (499)
T PTZ00052 239 FLEGVVPINIE--K-MDDKI-KVLFS----------------DGT--TELFDTVLYATGRKPDI-KGLN-LNAIGVHVNK 294 (499)
T ss_pred EEcCCeEEEEE--E-cCCeE-EEEEC----------------CCC--EEEcCEEEEeeCCCCCc-cccC-chhcCcEECC
Confidence 99998887775 3 12222 23221 222 68999999999999976 2121 2456778888
Q ss_pred CCceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 365 RGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 365 ~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|.+.+++ .+|+.|||||+|||+.+.......|++||+.+|.+|..
T Consensus 295 ~G~ii~~~---~~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g 340 (499)
T PTZ00052 295 SNKIIAPN---DCTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFK 340 (499)
T ss_pred CCCEeeCC---CcCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhC
Confidence 89876665 37899999999999865555666899999999999864
No 68
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.96 E-value=4.7e-27 Score=237.64 Aligned_cols=281 Identities=12% Similarity=0.177 Sum_probs=179.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCc--------------------------c
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHP--------------------------E 70 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~--------------------------~ 70 (415)
++++|+|||+||||..+|.. ..| .+|+|||+.. +|| ....|+.|.+. .
T Consensus 1 ~~yD~vvIG~G~~g~~aa~~--~~g--~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 75 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FAD--KRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVR 75 (452)
T ss_pred CCcCEEEECCCHHHHHHHHH--HCC--CeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccC
Confidence 35899999999999998754 457 9999999865 444 33344333211 0
Q ss_pred hHHHH--------HHHH----HH-h--hccCeEEEeceEe---ceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCC
Q 014990 71 TKIVI--------NQFS----RV-V--QHERCSFFGNVTL---GSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLI 131 (415)
Q Consensus 71 ~~~~~--------~~~~----~~-~--~~~~~~~~~~~~v---~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~ 131 (415)
...+. ..+. .. . +..+++++.+... .+.+.+.++ ...||+||||||+ .|..|++.+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs-~p~~p~~~~~~~~ 154 (452)
T TIGR03452 76 WPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGS-RPYIPPAIADSGV 154 (452)
T ss_pred HHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECC-CCCCCCCCCCCCC
Confidence 11111 1111 11 1 2257777776554 233555443 3589999999999 5666664333222
Q ss_pred CeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEee
Q 014990 132 GVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGR 211 (415)
Q Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r 211 (415)
.+.+..+... +. ..+++|+|||+|++|+|+|..|.+ .+ .+|+++.+
T Consensus 155 ~~~~~~~~~~-l~------------~~~k~vvVIGgG~ig~E~A~~l~~--------------------~G-~~Vtli~~ 200 (452)
T TIGR03452 155 RYHTNEDIMR-LP------------ELPESLVIVGGGYIAAEFAHVFSA--------------------LG-TRVTIVNR 200 (452)
T ss_pred EEEcHHHHHh-hh------------hcCCcEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEEc
Confidence 2333333221 10 136899999999999999999985 34 58999998
Q ss_pred cCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccc
Q 014990 212 RGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKP 291 (415)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~ 291 (415)
.+.+...+ ++ ++ ...+.+.+ ..+++++++..+
T Consensus 201 ~~~ll~~~-d~----------------------------~~-----~~~l~~~~--------------~~gI~i~~~~~V 232 (452)
T TIGR03452 201 STKLLRHL-DE----------------------------DI-----SDRFTEIA--------------KKKWDIRLGRNV 232 (452)
T ss_pred cCcccccc-CH----------------------------HH-----HHHHHHHH--------------hcCCEEEeCCEE
Confidence 76432111 11 11 11111111 346899998888
Q ss_pred ccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeec
Q 014990 292 DSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKN 371 (415)
Q Consensus 292 ~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~ 371 (415)
.++. . +++.+ .+.+. +| +++++|.|++++|++|+. ..+. ....|+.++++|++.+|
T Consensus 233 ~~i~--~-~~~~v-~v~~~----------------~g--~~i~~D~vl~a~G~~pn~-~~l~-~~~~gl~~~~~G~i~vd 288 (452)
T TIGR03452 233 TAVE--Q-DGDGV-TLTLD----------------DG--STVTADVLLVATGRVPNG-DLLD-AEAAGVEVDEDGRIKVD 288 (452)
T ss_pred EEEE--E-cCCeE-EEEEc----------------CC--CEEEcCEEEEeeccCcCC-CCcC-chhcCeeECCCCcEeeC
Confidence 8886 3 23222 12211 22 279999999999999976 2111 24567888888999999
Q ss_pred cCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 372 ISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 372 ~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
++ ++|+.|||||+|||+..+ .+...|.+||+.+|.+|..
T Consensus 289 ~~--~~Ts~~~IyA~GD~~~~~-~l~~~A~~~g~~~a~ni~~ 327 (452)
T TIGR03452 289 EY--GRTSARGVWALGDVSSPY-QLKHVANAEARVVKHNLLH 327 (452)
T ss_pred CC--cccCCCCEEEeecccCcc-cChhHHHHHHHHHHHHhcC
Confidence 87 789999999999998643 4555799999999999864
No 69
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.96 E-value=2.3e-26 Score=239.24 Aligned_cols=300 Identities=13% Similarity=0.101 Sum_probs=185.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC-CCCCCc-cccCCCCCCc---------------------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL-PTPFGL-VRSGVAPDHP--------------------------- 69 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~-~~~gg~-~~~~~~~~~~--------------------------- 69 (415)
.++|+|||+||||+.+|..+++.| .+|+|||+. ..+||. ...|+.|.+.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G--~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERG--LKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 679999999999999999999999 999999974 345553 2233222111
Q ss_pred --------------------chHHHHH-----------HHHHHhhccC-------eEEEeceEe--c-eEEEe--ccccc
Q 014990 70 --------------------ETKIVIN-----------QFSRVVQHER-------CSFFGNVTL--G-SSVSL--SELRQ 106 (415)
Q Consensus 70 --------------------~~~~~~~-----------~~~~~~~~~~-------~~~~~~~~v--~-~~v~~--~~~~~ 106 (415)
....+.+ .+...++..+ ++++.+... + ..+.. +....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 0111111 1222233332 555554332 1 12322 12235
Q ss_pred ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCccccc
Q 014990 107 LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELA 186 (415)
Q Consensus 107 ~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~ 186 (415)
.||+||||||+ .|+.|++++.+...++++.+... +. ..+++|+|||+|++|+|+|..+.+
T Consensus 274 ~ad~lIIATGS-~P~~P~~~~~~~~~V~ts~d~~~-l~------------~lpk~VvIVGgG~iGvE~A~~l~~------ 333 (659)
T PTZ00153 274 KVKNIIIATGS-TPNIPDNIEVDQKSVFTSDTAVK-LE------------GLQNYMGIVGMGIIGLEFMDIYTA------ 333 (659)
T ss_pred ECCEEEEcCCC-CCCCCCCCCCCCCcEEehHHhhh-hh------------hcCCceEEECCCHHHHHHHHHHHh------
Confidence 89999999999 67777766666566776654332 11 136899999999999999998885
Q ss_pred ccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHH
Q 014990 187 TTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLS 266 (415)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 266 (415)
.+ .+|+++.+.+.+...+ +.++.+ .+.+.+.
T Consensus 334 --------------~G-~eVTLIe~~~~ll~~~-d~eis~---------------------------------~l~~~ll 364 (659)
T PTZ00153 334 --------------LG-SEVVSFEYSPQLLPLL-DADVAK---------------------------------YFERVFL 364 (659)
T ss_pred --------------CC-CeEEEEeccCcccccC-CHHHHH---------------------------------HHHHHHh
Confidence 34 5899999987543211 111111 1111110
Q ss_pred HHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeec-CCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 267 KAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALK-GGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 267 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~-~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
.+.||+++++..+.++. . ++....+.+...... ++..+. ....++.+++++|.||||+|++
T Consensus 365 ------------~~~GV~I~~~~~V~~I~--~--~~~~~~v~v~~~~~~~~~~~~~--~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 365 ------------KSKPVRVHLNTLIEYVR--A--GKGNQPVIIGHSERQTGESDGP--KKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred ------------hcCCcEEEcCCEEEEEE--e--cCCceEEEEEEecccccccccc--ccccccceEEEcCEEEEEECcc
Confidence 15689999999998886 3 221112322110000 000000 0000122479999999999999
Q ss_pred CccCCCCcccCCCCccccCCCceeeccCCCCCcc------cCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 346 SVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQV------ENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 346 p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~------~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+. ..+.+ +..++..+ +|+|.||++ ++|+ +|||||+|||+..+ .+...|.+||+.+|++|..
T Consensus 427 Pnt-~~L~l-~~~gi~~~-~G~I~VDe~--lqTs~~~~~~v~~IYAiGDv~g~~-~La~~A~~qg~~aa~ni~g 494 (659)
T PTZ00153 427 PNT-NNLGL-DKLKIQMK-RGFVSVDEH--LRVLREDQEVYDNIFCIGDANGKQ-MLAHTASHQALKVVDWIEG 494 (659)
T ss_pred cCC-ccCCc-hhcCCccc-CCEEeECCC--CCcCCCCCCCCCCEEEEEecCCCc-cCHHHHHHHHHHHHHHHcC
Confidence 976 22222 34456665 499999987 6776 69999999998544 4666899999999999864
No 70
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.95 E-value=2.8e-26 Score=250.74 Aligned_cols=278 Identities=21% Similarity=0.182 Sum_probs=192.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC--CCCCcchHHHHHHHHHHhhcc-CeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV--APDHPETKIVINQFSRVVQHE-RCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (415)
..++|+||||||||++||.++++.+ .+|+|||+++.+||.+.+.. .++ ....+....+.+.+... ++.+..++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~~~g-~~~~~~~~~~~~~l~~~~~v~v~~~t~ 238 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAETIDG-KPAADWAAATVAELTAMPEVTLLPRTT 238 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccccCC-ccHHHHHHHHHHHHhcCCCcEEEcCCE
Confidence 3578999999999999999999999 99999999999998876432 111 22334445555555545 477777654
Q ss_pred ece-----------EEE----------eccc--ccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCC
Q 014990 95 LGS-----------SVS----------LSEL--RQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKN 151 (415)
Q Consensus 95 v~~-----------~v~----------~~~~--~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~ 151 (415)
+.. ... ..+. ...||+||||||+ .+++|++||++.++++++......++..
T Consensus 239 V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa-~~r~~pipG~~~pgV~~~~~~~~~l~~~----- 312 (985)
T TIGR01372 239 AFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGA-HERPLVFANNDRPGVMLAGAARTYLNRY----- 312 (985)
T ss_pred EEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCC-CCcCCCCCCCCCCCcEEchHHHHHHHhh-----
Confidence 411 000 0001 2479999999999 7899999999999999875544333321
Q ss_pred CCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCC
Q 014990 152 LSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIK 231 (415)
Q Consensus 152 ~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~ 231 (415)
.+..+++|+|||+|++|+|+|..|.+ .+.+.|+++.+++.. ...
T Consensus 313 ---~~~~gk~VvViG~G~~g~e~A~~L~~--------------------~G~~vV~vv~~~~~~-----~~~-------- 356 (985)
T TIGR01372 313 ---GVAPGKRIVVATNNDSAYRAAADLLA--------------------AGIAVVAIIDARADV-----SPE-------- 356 (985)
T ss_pred ---CcCCCCeEEEECCCHHHHHHHHHHHH--------------------cCCceEEEEccCcch-----hHH--------
Confidence 12368999999999999999999986 566778888765421 000
Q ss_pred CeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
..+.+. +.||+++++..+.++. . ++.+.++++..
T Consensus 357 -----------------------------l~~~L~-------------~~GV~i~~~~~v~~i~--g--~~~v~~V~l~~ 390 (985)
T TIGR01372 357 -----------------------------ARAEAR-------------ELGIEVLTGHVVAATE--G--GKRVSGVAVAR 390 (985)
T ss_pred -----------------------------HHHHHH-------------HcCCEEEcCCeEEEEe--c--CCcEEEEEEEe
Confidence 111121 5689999999888887 4 56676776653
Q ss_pred eeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCcc--ccCC--CceeeccCCCCCcccCCeeeee
Q 014990 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIV--PNIR--GRVLKNISGDSSQVENGLYVCG 387 (415)
Q Consensus 312 ~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~--~~~~--G~i~v~~~~~~~t~~p~vfaiG 387 (415)
. .+++++++||.|++++|++|+. .+....+.. .++. +++ -.|+.|+||++|
T Consensus 391 ~--------------~g~~~~i~~D~V~va~G~~Pnt----~L~~~lg~~~~~~~~~~~~~-------~~t~v~gVyaaG 445 (985)
T TIGR01372 391 N--------------GGAGQRLEADALAVSGGWTPVV----HLFSQRGGKLAWDAAIAAFL-------PGDAVQGCILAG 445 (985)
T ss_pred c--------------CCceEEEECCEEEEcCCcCchh----HHHHhcCCCeeeccccCcee-------cCCCCCCeEEee
Confidence 1 3455689999999999999976 333333322 2221 111 236799999999
Q ss_pred ccccCCccchhhhhhhHHHHHhhccc
Q 014990 388 WLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 388 D~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
|++ +..++. .|+.+|+.||..|..
T Consensus 446 D~~-g~~~~~-~A~~eG~~Aa~~i~~ 469 (985)
T TIGR01372 446 AAN-GLFGLA-AALADGAAAGAAAAR 469 (985)
T ss_pred ccC-CccCHH-HHHHHHHHHHHHHHH
Confidence 987 455555 699999999988753
No 71
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.7e-26 Score=210.85 Aligned_cols=281 Identities=19% Similarity=0.224 Sum_probs=199.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------CCCCcchHHHHHHHHHHhhccCeEE
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-------APDHPETKIVINQFSRVVQHERCSF 89 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (415)
+..++|+||||||||.+||.+.+|+| .+.=++- .++||+..... .| +.+...+...+.+..+.+.+.+
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~vDi 283 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYDVDV 283 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchhheeccc-cccchHHHHHHHHHHhhcCchh
Confidence 46899999999999999999999999 8776663 34666543221 12 2233455667777777777765
Q ss_pred EeceEe-----------ceEEEeccccc-ccCEEEEccCCCCCCCCCCCCCC---CCCeeechhhHHHhcCCCCCCCCCC
Q 014990 90 FGNVTL-----------GSSVSLSELRQ-LYHVVVLAYGAESDRALGIPGED---LIGVHSAREFVWWYNGHPDGKNLSP 154 (415)
Q Consensus 90 ~~~~~v-----------~~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~ 154 (415)
..-... -..+++.++-. ..+.+|++||+ .|+..++||.+ .+++-++.. ...
T Consensus 284 mn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGA-rWRn~nvPGE~e~rnKGVayCPH-----CDG-------- 349 (520)
T COG3634 284 MNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGA-RWRNMNVPGEDEYRNKGVAYCPH-----CDG-------- 349 (520)
T ss_pred hhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCc-chhcCCCCchHHHhhCCeeeCCC-----CCC--------
Confidence 322211 11344555443 68899999999 89999999976 456655432 112
Q ss_pred CCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCee
Q 014990 155 DLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLY 234 (415)
Q Consensus 155 ~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~ 234 (415)
.+.++|+|+|||||+||+|.|-+|+- -..+||++.=.+.+ +
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAG---------------------iv~hVtllEF~~eL---------k--------- 390 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAG---------------------IVEHVTLLEFAPEL---------K--------- 390 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHh---------------------hhheeeeeecchhh---------h---------
Confidence 24589999999999999999999984 23678776432211 0
Q ss_pred EEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeee
Q 014990 235 VHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTAL 314 (415)
Q Consensus 235 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~ 314 (415)
.+..++.++ +. -.++.+..+..-+++. + +..+++++.+.+..
T Consensus 391 ------------------AD~VLq~kl----~s------------l~Nv~ii~na~Ttei~--G-dg~kV~Gl~Y~dr~- 432 (520)
T COG3634 391 ------------------ADAVLQDKL----RS------------LPNVTIITNAQTTEVK--G-DGDKVTGLEYRDRV- 432 (520)
T ss_pred ------------------hHHHHHHHH----hc------------CCCcEEEecceeeEEe--c-CCceecceEEEecc-
Confidence 011122111 11 3468889998889998 6 44788899887642
Q ss_pred cCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc
Q 014990 315 KGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT 394 (415)
Q Consensus 315 ~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~ 394 (415)
+|+...++.+-|++-+|.-||+ .|.+.. +.++++|.|.+|.. .+|+.|||||+|||...+.
T Consensus 433 ------------sge~~~l~LeGvFVqIGL~PNT----~WLkg~-vel~~rGEIivD~~--g~TsvpGvFAAGD~T~~~y 493 (520)
T COG3634 433 ------------SGEEHHLELEGVFVQIGLLPNT----EWLKGA-VELNRRGEIIVDAR--GETNVPGVFAAGDCTTVPY 493 (520)
T ss_pred ------------CCceeEEEeeeeEEEEecccCh----hHhhch-hhcCcCccEEEecC--CCcCCCceeecCcccCCcc
Confidence 6777789999999999999987 575544 78899999999997 8999999999999997775
Q ss_pred cchhhhhhhHHHHHhhcc
Q 014990 395 GIIATNLYCAEETVSSLS 412 (415)
Q Consensus 395 ~~~~~a~~~g~~~a~~i~ 412 (415)
+.+-.+|.+|..|+....
T Consensus 494 KQIIIamG~GA~AaL~AF 511 (520)
T COG3634 494 KQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ceEEEEecCcchhhhhhh
Confidence 444478999998886543
No 72
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=215.28 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=205.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CCccccCCCCCCc--chHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FGLVRSGVAPDHP--ETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++++|||||++|.-|+.+++..++..+++|+-+...+ ..... + +... .......+..+..++.+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~--L-s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRAR--L-SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchh--c-ccceeeccccccccChhhHhhcCceEEEcce
Confidence 477899999999999999999999988899999755432 21111 0 1110 1112222333457788999998887
Q ss_pred ec------eEEEeccccc-ccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 95 LG------SSVSLSELRQ-LYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 95 v~------~~v~~~~~~~-~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+. +.+.+.+++. .|++|+||||+ .++.|++||.+.+++.+..+....- .+..++...+.|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs-~~~~l~~pG~~~~nv~~ireieda~-------~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGS-SAKTLDIPGVELKNVFYLREIEDAN-------RLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecC-ccccCCCCCccccceeeeccHHHHH-------HHHHHhccCceEEEECc
Confidence 63 3455555554 89999999999 8899999999988888766543211 11112335788999999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 247 (415)
|..|+|++.+|.. ...+||++.+.+.....++.
T Consensus 222 G~ig~Evaa~l~~---------------------~~~~VT~V~~e~~~~~~lf~-------------------------- 254 (478)
T KOG1336|consen 222 GFIGMEVAAALVS---------------------KAKSVTVVFPEPWLLPRLFG-------------------------- 254 (478)
T ss_pred hHHHHHHHHHHHh---------------------cCceEEEEccCccchhhhhh--------------------------
Confidence 9999999999985 56899999998754322222
Q ss_pred cHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccC
Q 014990 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~ 327 (415)
+.+++...+.+. ++||++..++.+.++. ...+|++..|.+.+
T Consensus 255 -------~~i~~~~~~y~e-------------~kgVk~~~~t~~s~l~--~~~~Gev~~V~l~d---------------- 296 (478)
T KOG1336|consen 255 -------PSIGQFYEDYYE-------------NKGVKFYLGTVVSSLE--GNSDGEVSEVKLKD---------------- 296 (478)
T ss_pred -------HHHHHHHHHHHH-------------hcCeEEEEecceeecc--cCCCCcEEEEEecc----------------
Confidence 233344444443 7799999999999887 43457776665543
Q ss_pred CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCc---------cchh
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPT---------GIIA 398 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~---------~~~~ 398 (415)
+.+++||+|+.++|.+|++ ++... +..++..|.+.||.. ++|++|||||+||+++-+- ....
T Consensus 297 --g~~l~adlvv~GiG~~p~t----~~~~~-g~~~~~~G~i~V~~~--f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~ 367 (478)
T KOG1336|consen 297 --GKTLEADLVVVGIGIKPNT----SFLEK-GILLDSKGGIKVDEF--FQTSVPNVYAIGDVATFPLKGYGEDRRVEHVD 367 (478)
T ss_pred --CCEeccCeEEEeecccccc----ccccc-cceecccCCEeehhc--eeeccCCcccccceeecccccccccccchHHH
Confidence 2389999999999999977 34444 788899999999997 8999999999999985331 2233
Q ss_pred hhhhhHHHHHhhc
Q 014990 399 TNLYCAEETVSSL 411 (415)
Q Consensus 399 ~a~~~g~~~a~~i 411 (415)
.|..+|..+...|
T Consensus 368 ~A~~~g~~av~ai 380 (478)
T KOG1336|consen 368 HARASGRQAVKAI 380 (478)
T ss_pred HHHHHHHhhhhhh
Confidence 5677777655554
No 73
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.93 E-value=1.5e-24 Score=218.55 Aligned_cols=273 Identities=19% Similarity=0.229 Sum_probs=175.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-------------------------------
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV------------------------------- 64 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~------------------------------- 64 (415)
....++|+|||||+|||+||.+|++.| .+|++||+++.+||.+.+.-
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 346789999999999999999999999 99999999999999876520
Q ss_pred ------CCC-------------CcchHHHHHHHHHHhhccCeE--EEeceEece--------EEEeccc-----ccccCE
Q 014990 65 ------APD-------------HPETKIVINQFSRVVQHERCS--FFGNVTLGS--------SVSLSEL-----RQLYHV 110 (415)
Q Consensus 65 ------~~~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~--------~v~~~~~-----~~~~d~ 110 (415)
.|. ++...++.+++..++++.++. ++.++.|.. .++.... ...||+
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~ 164 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA 164 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence 011 112256788888888888876 666666522 2333211 235899
Q ss_pred EEEccCC-CCCCCCCCCCCC-CCC-eeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccc
Q 014990 111 VVLAYGA-ESDRALGIPGED-LIG-VHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELAT 187 (415)
Q Consensus 111 lvlAtG~-~~~~~~~i~g~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~ 187 (415)
||+|||. ..|+.|++||.+ .++ +.++..+.. + ....+|+|+|||+|.||+|+|.+|.+
T Consensus 165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~-----~-------~~~~gk~VvVVG~G~Sg~diA~~L~~------- 225 (461)
T PLN02172 165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRV-----P-------DPFKNEVVVVIGNFASGADISRDIAK------- 225 (461)
T ss_pred EEEeccCCCCCcCCCCCCcccCCceEEEecccCC-----c-------cccCCCEEEEECCCcCHHHHHHHHHH-------
Confidence 9999996 368899999975 333 344443331 1 12379999999999999999999996
Q ss_pred cCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHH
Q 014990 188 TDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSK 267 (415)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 267 (415)
.+++|++++|+..... . +. ++
T Consensus 226 --------------~a~~V~l~~r~~~~~~------~-~~-----------------~~--------------------- 246 (461)
T PLN02172 226 --------------VAKEVHIASRASESDT------Y-EK-----------------LP--------------------- 246 (461)
T ss_pred --------------hCCeEEEEEeeccccc------c-cc-----------------Cc---------------------
Confidence 5679999999753210 0 00 00
Q ss_pred HHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCc
Q 014990 268 AAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSV 347 (415)
Q Consensus 268 ~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~ 347 (415)
....++.....+..+. . ++ .|.+. +|+ .+++|.||+|||++++
T Consensus 247 ------------~~~~~v~~~~~I~~~~--~--~g---~V~f~----------------DG~--~~~~D~Ii~~TGy~~~ 289 (461)
T PLN02172 247 ------------VPQNNLWMHSEIDTAH--E--DG---SIVFK----------------NGK--VVYADTIVHCTGYKYH 289 (461)
T ss_pred ------------CCCCceEECCccccee--c--CC---eEEEC----------------CCC--CccCCEEEECCcCCcc
Confidence 0011222333344443 2 33 24443 233 5789999999999995
Q ss_pred cCCCCcccCCCCccccCCCce-eeccCCCCCcc-cCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 348 PVNGLPFDNHKGIVPNIRGRV-LKNISGDSSQV-ENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 348 ~~~~~~~~~~~g~~~~~~G~i-~v~~~~~~~t~-~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
. ||....+....+++++ ..-.+. +... .|+++++|=...+.. +.....|++++|.-+.
T Consensus 290 ~----pfL~~~~~i~v~~~~v~~Ly~~~-f~~~~~p~LafiG~~~~~~~--f~~~E~Qa~~~a~v~s 349 (461)
T PLN02172 290 F----PFLETNGYMRIDENRVEPLYKHV-FPPALAPGLSFIGLPAMGIQ--FVMFEIQSKWVAAVLS 349 (461)
T ss_pred c----cccCcccceeeCCCcchhhHHhh-cCCCCCCcEEEEeccccccC--chhHHHHHHHHHHHHc
Confidence 4 5655433222222332 122222 3344 499999996533322 2357899999997654
No 74
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.7e-24 Score=198.60 Aligned_cols=285 Identities=17% Similarity=0.220 Sum_probs=192.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCC----------------------------C
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAP----------------------------D 67 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~----------------------------~ 67 (415)
.+.++.+|||||.+|+++|.+.+..| .++.|+|..-.+||. ..+|+.| .
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGS 95 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccC
Confidence 46789999999999999999999999 999999987555553 1222111 1
Q ss_pred Ccch------HHHHHHH----HHHhhccCeEEEeceEe-----ceEEEecccc---cccCEEEEccCCCCCCCCCCCCCC
Q 014990 68 HPET------KIVINQF----SRVVQHERCSFFGNVTL-----GSSVSLSELR---QLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 68 ~~~~------~~~~~~~----~~~~~~~~~~~~~~~~v-----~~~v~~~~~~---~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
+.+. ++...++ ...+...++.++.+... .-++...+.. ..++++++|||. .|.+|+|||.+
T Consensus 96 fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg-~p~~PnIpG~E 174 (478)
T KOG0405|consen 96 FDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGG-RPIIPNIPGAE 174 (478)
T ss_pred CcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCC-ccCCCCCCchh
Confidence 1111 1122222 23334445666665432 1123333443 367899999999 78888999976
Q ss_pred CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE
Q 014990 130 LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV 209 (415)
Q Consensus 130 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 209 (415)
.. .++..|+. . -..+|+++|||+|++++|+|.-+.. .| .+++++
T Consensus 175 ~g--idSDgff~----L---------ee~Pkr~vvvGaGYIavE~Agi~~g--------------------Lg-sethlf 218 (478)
T KOG0405|consen 175 LG--IDSDGFFD----L---------EEQPKRVVVVGAGYIAVEFAGIFAG--------------------LG-SETHLF 218 (478)
T ss_pred hc--cccccccc----h---------hhcCceEEEEccceEEEEhhhHHhh--------------------cC-CeeEEE
Confidence 32 12222221 0 1158999999999999999999985 55 489999
Q ss_pred eecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecc
Q 014990 210 GRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFR 289 (415)
Q Consensus 210 ~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~ 289 (415)
.|....+..|.. .++.. +.+.+ ..+||++|.++
T Consensus 219 iR~~kvLR~FD~-~i~~~---------------------------------v~~~~-------------~~~ginvh~~s 251 (478)
T KOG0405|consen 219 IRQEKVLRGFDE-MISDL---------------------------------VTEHL-------------EGRGINVHKNS 251 (478)
T ss_pred EecchhhcchhH-HHHHH---------------------------------HHHHh-------------hhcceeecccc
Confidence 998766544432 11111 11222 26789999999
Q ss_pred ccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCcee
Q 014990 290 KPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVL 369 (415)
Q Consensus 290 ~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~ 369 (415)
++++++ ...++... + ... .+ ..-++|.++||+|..|+. .++.+ +..|+.++.+|.|.
T Consensus 252 ~~~~v~--K~~~g~~~-~-i~~---------------~~--~i~~vd~llwAiGR~Pnt-k~L~l-e~vGVk~~~~g~Ii 308 (478)
T KOG0405|consen 252 SVTKVI--KTDDGLEL-V-ITS---------------HG--TIEDVDTLLWAIGRKPNT-KGLNL-ENVGVKTDKNGAII 308 (478)
T ss_pred cceeee--ecCCCceE-E-EEe---------------cc--ccccccEEEEEecCCCCc-ccccc-hhcceeeCCCCCEE
Confidence 999987 21232111 1 111 22 245599999999999976 44544 56789999999999
Q ss_pred eccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 370 KNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 370 v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
+|++ +.|++|+||++||+. +.-.++..|...|+..|.++..
T Consensus 309 vDeY--q~Tnvp~I~avGDv~-gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 309 VDEY--QNTNVPSIWAVGDVT-GKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred Eecc--ccCCCCceEEecccc-CcEecchHHHhhhhhHHHHhhc
Confidence 9998 899999999999987 4555677899999999988753
No 75
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.93 E-value=5.5e-25 Score=208.77 Aligned_cols=313 Identities=15% Similarity=0.145 Sum_probs=194.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC-ccccCCCCCCcchHHHHHHHHHHhhccC--eEEEece
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG-LVRSGVAPDHPETKIVINQFSRVVQHER--CSFFGNV 93 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 93 (415)
.++++|||+|.|.+|.+++..|-... ++|++|++.+++-- .+.....-+-.+.+.+.++.+...+..+ +++....
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 46889999999999999999999887 99999999876422 2222222244466777788777776653 4444332
Q ss_pred Ee-----ceEEEec-----c----cccccCEEEEccCCCCCCCCCCCCCC-----CCCeeechhhHHHhcCCCCCCCC--
Q 014990 94 TL-----GSSVSLS-----E----LRQLYHVVVLAYGAESDRALGIPGED-----LIGVHSAREFVWWYNGHPDGKNL-- 152 (415)
Q Consensus 94 ~v-----~~~v~~~-----~----~~~~~d~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~~-- 152 (415)
.+ .+.+.++ . ....|||||+|+|+ .+..+++||.. .+.+.++.+....+-...+...+
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA-~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGA-EPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccC-CCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 22 1122222 1 23479999999999 78888999865 44455665554433221111111
Q ss_pred -C-CCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcC
Q 014990 153 -S-PDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGI 230 (415)
Q Consensus 153 -~-~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~ 230 (415)
. .....--+++|||||++|+|+|.+|+. +-..|+.++.-.. ...-+||++...+.++.
T Consensus 210 l~~eerkRlLh~VVVGGGPTGVEFAaEL~D----fi~~Dl~k~yp~l---~~~i~vtLiEA~d~iL~------------- 269 (491)
T KOG2495|consen 210 LSDEERKRLLHFVVVGGGPTGVEFAAELAD----FIPEDLRKIYPEL---KKDIKVTLIEAADHILN------------- 269 (491)
T ss_pred CChHHhhheEEEEEECCCCcceeehHHHHH----HHHHHHHHhhhcc---hhheEEEeeccchhHHH-------------
Confidence 0 011122479999999999999999985 1111111111000 11125666655544322
Q ss_pred CCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEe
Q 014990 231 KNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFE 310 (415)
Q Consensus 231 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~ 310 (415)
+..+++.+...+... +.+|.++.++.+..+. + . .+...
T Consensus 270 -------------------------mFdkrl~~yae~~f~---------~~~I~~~~~t~Vk~V~--~---~---~I~~~ 307 (491)
T KOG2495|consen 270 -------------------------MFDKRLVEYAENQFV---------RDGIDLDTGTMVKKVT--E---K---TIHAK 307 (491)
T ss_pred -------------------------HHHHHHHHHHHHHhh---------hccceeecccEEEeec--C---c---EEEEE
Confidence 222233333333322 6789999988888875 2 2 23222
Q ss_pred eeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCC--ceeeccCCCCCcccCCeeeeec
Q 014990 311 KTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRG--RVLKNISGDSSQVENGLYVCGW 388 (415)
Q Consensus 311 ~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G--~i~v~~~~~~~t~~p~vfaiGD 388 (415)
. .+|+.++|++-+++|+||..|.++ .....-..++.| .+.+|+++ ...+.+||||+||
T Consensus 308 ~--------------~~g~~~~iPYG~lVWatG~~~rp~-----~k~lm~~i~e~~rr~L~vDE~L-rV~G~~nvfAiGD 367 (491)
T KOG2495|consen 308 T--------------KDGEIEEIPYGLLVWATGNGPRPV-----IKDLMKQIDEQGRRGLAVDEWL-RVKGVKNVFAIGD 367 (491)
T ss_pred c--------------CCCceeeecceEEEecCCCCCchh-----hhhHhhcCCccCceeeeeecee-eccCcCceEEecc
Confidence 2 146667999999999999998552 222222344555 78899987 7889999999999
Q ss_pred cccCC--ccchhhhhhhHHHHHhhcccc
Q 014990 389 LKRGP--TGIIATNLYCAEETVSSLSLI 414 (415)
Q Consensus 389 ~~~~~--~~~~~~a~~~g~~~a~~i~~~ 414 (415)
|+..+ ......|..||+.+|+++.++
T Consensus 368 ca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 368 CADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHH
Confidence 98322 223457999999999988764
No 76
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-24 Score=186.16 Aligned_cols=288 Identities=18% Similarity=0.233 Sum_probs=196.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC----CCCCCcccc----CCCCCCc---chHHHHHHHHHHhhccCe
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL----PTPFGLVRS----GVAPDHP---ETKIVINQFSRVVQHERC 87 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~----~~~gg~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~ 87 (415)
..+|+|||.|||+..+|++++|.. .+-+|||.. ..+||++.- ...|+++ .-.++.+.++++..+.+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcc
Confidence 458999999999999999999997 999999975 235665431 1234444 345778889999999999
Q ss_pred EEEeceEeceE-------EEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCC
Q 014990 88 SFFGNVTLGSS-------VSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTD 160 (415)
Q Consensus 88 ~~~~~~~v~~~-------v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k 160 (415)
+++.+++-.-+ +-.+.....+|.||+|||+ ..+.+-+||.-... +...-...+ ..++. ...+..+|
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGA-sAkRl~~pg~ge~~-fWqrGiSaC--AVCDG---aapifrnk 158 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGA-SAKRLHLPGEGEGE-FWQRGISAC--AVCDG---AAPIFRNK 158 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEeccc-ceeeeecCCCCcch-HHhcccchh--hcccC---cchhhcCC
Confidence 88877653221 2223334578999999999 55666777762111 111110000 00111 11245899
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
..+|||||.+++|-|..|.+ -+.+|++++|++.++++
T Consensus 159 ~laVIGGGDsA~EEA~fLtk---------------------yaskVyii~Rrd~fRAs---------------------- 195 (322)
T KOG0404|consen 159 PLAVIGGGDSAMEEALFLTK---------------------YASKVYIIHRRDHFRAS---------------------- 195 (322)
T ss_pred eeEEEcCcHHHHHHHHHHHh---------------------hccEEEEEEEhhhhhHH----------------------
Confidence 99999999999999999996 34799999999764210
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCC
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPG 320 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g 320 (415)
..+++-. ....+|.++++....+.. . +...+.+++++++.
T Consensus 196 ----------------------~~Mq~ra--------~~npnI~v~~nt~~~ea~--g-d~~~l~~l~ikn~~------- 235 (322)
T KOG0404|consen 196 ----------------------KIMQQRA--------EKNPNIEVLYNTVAVEAL--G-DGKLLNGLRIKNVK------- 235 (322)
T ss_pred ----------------------HHHHHHH--------hcCCCeEEEechhhhhhc--c-CcccccceEEEecc-------
Confidence 0111110 125579999999888887 5 34667888887752
Q ss_pred cceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCCccchhhh
Q 014990 321 KQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATN 400 (415)
Q Consensus 321 ~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a 400 (415)
+|+...++++-+++++|..|++ .|.+. .+.++++|++++.+-+ ..||+||+||+||+-...-...-.|
T Consensus 236 ------tge~~dl~v~GlFf~IGH~Pat----~~l~g-qve~d~~GYi~t~pgt-s~TsvpG~FAAGDVqD~kyRQAvTa 303 (322)
T KOG0404|consen 236 ------TGEETDLPVSGLFFAIGHSPAT----KFLKG-QVELDEDGYIVTRPGT-SLTSVPGVFAAGDVQDKKYRQAVTA 303 (322)
T ss_pred ------cCcccccccceeEEEecCCchh----hHhcC-ceeeccCceEEeccCc-ccccccceeeccccchHHHHHHHhh
Confidence 6777899999999999999977 34332 5788999999999766 7899999999999864221112135
Q ss_pred hhhHHHHHhh
Q 014990 401 LYCAEETVSS 410 (415)
Q Consensus 401 ~~~g~~~a~~ 410 (415)
...|.++|..
T Consensus 304 AgsGciaald 313 (322)
T KOG0404|consen 304 AGSGCIAALD 313 (322)
T ss_pred hccchhhhhh
Confidence 5555555543
No 77
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.93 E-value=3.8e-24 Score=215.40 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCC-----cchHHHHHH-HHHHhhccCeEEEeceEece------EEE
Q 014990 33 YTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDH-----PETKIVINQ-FSRVVQHERCSFFGNVTLGS------SVS 100 (415)
Q Consensus 33 ~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~------~v~ 100 (415)
+||.+|++.+++.+|+|||+++.++- ..+++ |.+ ....+.... ...+++..+++++.+..+.. .+.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~~-~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVSF-ANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCceeE-EcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 47899998887899999999986532 11122 211 112222222 23344667888876655521 222
Q ss_pred ecc----cccc--cCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHH--hcCCCCCCCCCCCCCCCCeEEEEcCChhHH
Q 014990 101 LSE----LRQL--YHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWW--YNGHPDGKNLSPDLKSTDTAVILGQGNVAL 172 (415)
Q Consensus 101 ~~~----~~~~--~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~ 172 (415)
+.. .... ||+||||||+ .|+.|++||.+.+++++....... +..... ...+++|+|||+|++|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~-~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~-------~~~~~~vvViGgG~~g~ 150 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGA-SPIVPNIEGINLDIVFTLRNLEDTDAIKQYID-------KNKVENVVIIGGGYIGI 150 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCC-CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHh-------hcCCCeEEEECCCHHHH
Confidence 221 1234 9999999999 778889999876666654432211 111000 01578999999999999
Q ss_pred HHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhh
Q 014990 173 DVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEM 252 (415)
Q Consensus 173 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 252 (415)
|+|..|.+ .+ .+|+++.+++.+......+++
T Consensus 151 e~A~~l~~--------------------~g-~~Vtli~~~~~~~~~~~~~~~---------------------------- 181 (427)
T TIGR03385 151 EMAEALRE--------------------RG-KNVTLIHRSERILNKLFDEEM---------------------------- 181 (427)
T ss_pred HHHHHHHh--------------------CC-CcEEEEECCcccCccccCHHH----------------------------
Confidence 99999985 33 479999988654211111111
Q ss_pred hchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEE
Q 014990 253 KNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFED 332 (415)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~ 332 (415)
...+.+.+. +.||+++++..+.++. . ++.+ +.+. +| ++
T Consensus 182 -----~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~--~~~~--v~~~----------------~g--~~ 219 (427)
T TIGR03385 182 -----NQIVEEELK-------------KHEINLRLNEEVDSIE--G--EERV--KVFT----------------SG--GV 219 (427)
T ss_pred -----HHHHHHHHH-------------HcCCEEEeCCEEEEEe--c--CCCE--EEEc----------------CC--CE
Confidence 111222222 5689999999888886 3 3322 2221 22 26
Q ss_pred EecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeeccccCC---------ccchhhhhhh
Q 014990 333 LDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKRGP---------TGIIATNLYC 403 (415)
Q Consensus 333 i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~~~---------~~~~~~a~~~ 403 (415)
+++|.+|||+|++|+. ++....++.++++|++.+|+. ++|+.|||||+|||+..+ ......|+.|
T Consensus 220 i~~D~vi~a~G~~p~~----~~l~~~gl~~~~~G~i~vd~~--~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~ 293 (427)
T TIGR03385 220 YQADMVILATGIKPNS----ELAKDSGLKLGETGAIWVNEK--FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKM 293 (427)
T ss_pred EEeCEEEECCCccCCH----HHHHhcCcccCCCCCEEECCC--cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHH
Confidence 9999999999999975 355666778888899999987 789999999999998532 1244579999
Q ss_pred HHHHHhhccc
Q 014990 404 AEETVSSLSL 413 (415)
Q Consensus 404 g~~~a~~i~~ 413 (415)
|+.+|.+|..
T Consensus 294 g~~~a~ni~g 303 (427)
T TIGR03385 294 GRIAGENIAG 303 (427)
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 78
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.92 E-value=9.2e-24 Score=212.75 Aligned_cols=291 Identities=19% Similarity=0.276 Sum_probs=204.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-CceEEEEcCCCCCCC--ccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFG--LVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~-~~~v~lie~~~~~gg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.+.+++|||-|.||..+...+++..| .++|++|-..+++.- .....+.++....+++...-.....+.+++++.+..
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~ 81 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEK 81 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCe
Confidence 35789999999999999999999553 379999977665421 111122244334455555555667778999988876
Q ss_pred e------ceEEEecccc-cccCEEEEccCCCCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 95 L------GSSVSLSELR-QLYHVVVLAYGAESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 95 v------~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
+ .+.++.+.+. ..||.||+|||| .|..+|+||.+.++++....+-....... .....++-+|||+
T Consensus 82 v~~idr~~k~V~t~~g~~~~YDkLilATGS-~pfi~PiPG~~~~~v~~~R~i~D~~am~~-------~ar~~~~avVIGG 153 (793)
T COG1251 82 VIQIDRANKVVTTDAGRTVSYDKLIIATGS-YPFILPIPGSDLPGVFVYRTIDDVEAMLD-------CARNKKKAVVIGG 153 (793)
T ss_pred eEEeccCcceEEccCCcEeecceeEEecCc-cccccCCCCCCCCCeeEEecHHHHHHHHH-------HHhccCCcEEEcc
Confidence 5 2345555554 489999999999 88888999999888876544332211110 0114566899999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCC
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPT 247 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~ 247 (415)
|..|+|+|..|.. ..-++++++-++.+-
T Consensus 154 GLLGlEaA~~L~~---------------------~Gm~~~Vvh~~~~lM------------------------------- 181 (793)
T COG1251 154 GLLGLEAARGLKD---------------------LGMEVTVVHIAPTLM------------------------------- 181 (793)
T ss_pred chhhhHHHHHHHh---------------------CCCceEEEeecchHH-------------------------------
Confidence 9999999999986 334677776654321
Q ss_pred cHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccC
Q 014990 248 DEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGT 327 (415)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~ 327 (415)
..++.+..-++|+... .+.|+.++++....++. . .+.+.+++|.+
T Consensus 182 ------erQLD~~ag~lL~~~l---------e~~Gi~~~l~~~t~ei~--g--~~~~~~vr~~D---------------- 226 (793)
T COG1251 182 ------ERQLDRTAGRLLRRKL---------EDLGIKVLLEKNTEEIV--G--EDKVEGVRFAD---------------- 226 (793)
T ss_pred ------HHhhhhHHHHHHHHHH---------Hhhcceeecccchhhhh--c--CcceeeEeecC----------------
Confidence 0111222223333222 27899999988888887 4 67777787764
Q ss_pred CceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc--C-CccchhhhhhhH
Q 014990 328 GEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR--G-PTGIIATNLYCA 404 (415)
Q Consensus 328 g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~--~-~~~~~~~a~~~g 404 (415)
|. .+++|+|+||+|++||. .+...+|+.+++ |.+..|. ++||.|+|||+|.|+. + --++++.+..|+
T Consensus 227 G~--~i~ad~VV~a~GIrPn~----ela~~aGlavnr-GIvvnd~---mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~ 296 (793)
T COG1251 227 GT--EIPADLVVMAVGIRPND----ELAKEAGLAVNR-GIVVNDY---MQTSDPDIYAVGECAEHRGKVYGLVAPLYEQA 296 (793)
T ss_pred CC--cccceeEEEeccccccc----HhHHhcCcCcCC-Ceeeccc---ccccCCCeeehhhHHHhcCccceehhHHHHHH
Confidence 22 79999999999999976 566788888886 6665554 9999999999999984 2 247777899999
Q ss_pred HHHHhhccc
Q 014990 405 EETVSSLSL 413 (415)
Q Consensus 405 ~~~a~~i~~ 413 (415)
+++|.++..
T Consensus 297 ~v~a~hl~~ 305 (793)
T COG1251 297 KVLADHLCG 305 (793)
T ss_pred HHHHHHhcc
Confidence 999999864
No 79
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.91 E-value=7.5e-23 Score=191.38 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=189.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc-cccCCCCCCcchHH-----------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL-VRSGVAPDHPETKI----------------------- 73 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~-~~~~~~~~~~~~~~----------------------- 73 (415)
..++|+|||+||+|.-||...++.| .+.+++|++..+||. +..|+.|.+.....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 5799999999999999999999999 999999999888875 34444454322110
Q ss_pred ----------------HHHHHHHHhhccCeEEEeceEe--c-eE--EEeccc---ccccCEEEEccCCCCCCCCCCCCCC
Q 014990 74 ----------------VINQFSRVVQHERCSFFGNVTL--G-SS--VSLSEL---RQLYHVVVLAYGAESDRALGIPGED 129 (415)
Q Consensus 74 ----------------~~~~~~~~~~~~~~~~~~~~~v--~-~~--v~~~~~---~~~~d~lvlAtG~~~~~~~~i~g~~ 129 (415)
+..-+..+++..++.++.+..- + .. ++..++ .+.++++|+|||+ ..+++||.+
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGS---eV~~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGS---EVTPFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCC---ccCCCCCeE
Confidence 0011223333444444433221 1 01 122222 2368899999998 223566754
Q ss_pred --CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEE
Q 014990 130 --LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVY 207 (415)
Q Consensus 130 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 207 (415)
.+.+.++..-+. + -+-+++.+|||+|.+|+|+..-..+ +|. +||
T Consensus 193 IDekkIVSStgALs-L------------~~vPk~~~viG~G~IGLE~gsV~~r--------------------LGs-eVT 238 (506)
T KOG1335|consen 193 IDEKKIVSSTGALS-L------------KEVPKKLTVIGAGYIGLEMGSVWSR--------------------LGS-EVT 238 (506)
T ss_pred ecCceEEecCCccc-h------------hhCcceEEEEcCceeeeehhhHHHh--------------------cCC-eEE
Confidence 444555432211 0 1258999999999999999988886 564 788
Q ss_pred EEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEe
Q 014990 208 LVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVF 287 (415)
Q Consensus 208 l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 287 (415)
++.--+.+- +..+.++. +...+.|. ..|+.|++
T Consensus 239 ~VEf~~~i~-----------------------------~~mD~Eis-----k~~qr~L~-------------kQgikF~l 271 (506)
T KOG1335|consen 239 VVEFLDQIG-----------------------------GVMDGEIS-----KAFQRVLQ-------------KQGIKFKL 271 (506)
T ss_pred EEEehhhhc-----------------------------cccCHHHH-----HHHHHHHH-------------hcCceeEe
Confidence 876544332 11112221 22222332 56899999
Q ss_pred ccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCc
Q 014990 288 FRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGR 367 (415)
Q Consensus 288 ~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~ 367 (415)
++.+.... .+.++.+ .+++.+. .+++.++++||++++++|.+|.. .++.+ +..|+..|.+|+
T Consensus 272 ~tkv~~a~--~~~dg~v-~i~ve~a-------------k~~k~~tle~DvlLVsiGRrP~t-~GLgl-e~iGi~~D~r~r 333 (506)
T KOG1335|consen 272 GTKVTSAT--RNGDGPV-EIEVENA-------------KTGKKETLECDVLLVSIGRRPFT-EGLGL-EKIGIELDKRGR 333 (506)
T ss_pred ccEEEEee--ccCCCce-EEEEEec-------------CCCceeEEEeeEEEEEccCcccc-cCCCh-hhcccccccccc
Confidence 99988886 3234433 3444332 15677899999999999999954 55655 456888899999
Q ss_pred eeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhcc
Q 014990 368 VLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLS 412 (415)
Q Consensus 368 i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~ 412 (415)
+.++.. ++|.+|+||+|||+..+|-. ...|..||=.+.+.|.
T Consensus 334 v~v~~~--f~t~vP~i~~IGDv~~gpML-AhkAeeegI~~VE~i~ 375 (506)
T KOG1335|consen 334 VIVNTR--FQTKVPHIYAIGDVTLGPML-AHKAEEEGIAAVEGIA 375 (506)
T ss_pred eecccc--ccccCCceEEecccCCcchh-hhhhhhhchhheeeec
Confidence 999987 88999999999999977753 3357777777766553
No 80
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.91 E-value=9.5e-23 Score=208.22 Aligned_cols=162 Identities=25% Similarity=0.319 Sum_probs=112.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC-----------------------C---------C
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV-----------------------A---------P 66 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~-----------------------~---------~ 66 (415)
+++|+|||||++||++|..|.+.| .++++||+++.+||.+.+.- . |
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p 78 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYP 78 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCS
T ss_pred CCEEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCC
Confidence 479999999999999999999999 99999999999999986421 1 1
Q ss_pred CCcchHHHHHHHHHHhhccCe--EEEeceEece-------------EEEecc-c---ccccCEEEEccCC-CCCCCCC--
Q 014990 67 DHPETKIVINQFSRVVQHERC--SFFGNVTLGS-------------SVSLSE-L---RQLYHVVVLAYGA-ESDRALG-- 124 (415)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~-------------~v~~~~-~---~~~~d~lvlAtG~-~~~~~~~-- 124 (415)
.++...++.+++...++++++ .+++++.|.. .++... + ...||+||+|||. ..|..|.
T Consensus 79 ~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~ 158 (531)
T PF00743_consen 79 DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPS 158 (531)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB----
T ss_pred CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhh
Confidence 122335788899999888775 3666666522 233322 1 1258999999997 4577774
Q ss_pred CCCCC--CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC
Q 014990 125 IPGED--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS 202 (415)
Q Consensus 125 i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 202 (415)
+||.+ ...+.|+.+|.... ...+|+|+|||+|.||+|+|.+|++ .
T Consensus 159 ~~G~e~F~G~i~HS~~yr~~~------------~f~gKrVlVVG~g~Sg~DIa~el~~---------------------~ 205 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRDPE------------PFKGKRVLVVGGGNSGADIAVELSR---------------------V 205 (531)
T ss_dssp -CTGGGHCSEEEEGGG--TGG------------GGTTSEEEEESSSHHHHHHHHHHTT---------------------T
T ss_pred hhhhhcCCeeEEccccCcChh------------hcCCCEEEEEeCCHhHHHHHHHHHH---------------------h
Confidence 88976 45677887765321 2379999999999999999999996 5
Q ss_pred cceEEEEeecCcc
Q 014990 203 IRKVYLVGRRGPV 215 (415)
Q Consensus 203 ~~~v~l~~r~~~~ 215 (415)
+++|++..|+..+
T Consensus 206 a~~v~~s~R~~~w 218 (531)
T PF00743_consen 206 AKKVYLSTRRGAW 218 (531)
T ss_dssp SCCEEEECC----
T ss_pred cCCeEEEEecccc
Confidence 6899999998543
No 81
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-23 Score=189.80 Aligned_cols=294 Identities=20% Similarity=0.275 Sum_probs=185.8
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC---CC-----CCCc-cccCCCCCCcc--------------
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL---PT-----PFGL-VRSGVAPDHPE-------------- 70 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~---~~-----~gg~-~~~~~~~~~~~-------------- 70 (415)
......++++|||||.+||+||...+..| .+|.++|-- +. +||. ..-|.+|.+.+
T Consensus 14 ~~~sydyDLIviGgGSgGLacaKeAa~~G--~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~ 91 (503)
T KOG4716|consen 14 LFSSYDYDLIVIGGGSGGLACAKEAADLG--AKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDAR 91 (503)
T ss_pred hcccCCccEEEEcCCcchhhHHHHHHhcC--CcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999 999998742 21 1221 11122221100
Q ss_pred ----------h----HHHHHHHHHHhhccC----eEEEeceEe-----ce-------EEEecccc---cccCEEEEccCC
Q 014990 71 ----------T----KIVINQFSRVVQHER----CSFFGNVTL-----GS-------SVSLSELR---QLYHVVVLAYGA 117 (415)
Q Consensus 71 ----------~----~~~~~~~~~~~~~~~----~~~~~~~~v-----~~-------~v~~~~~~---~~~d~lvlAtG~ 117 (415)
. ....+..+..++..| +.++..... +. ..+...++ ..++.+|+|||.
T Consensus 92 kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~ 171 (503)
T KOG4716|consen 92 KYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGL 171 (503)
T ss_pred hhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecC
Confidence 0 011222233333322 111111111 00 11222222 257899999999
Q ss_pred CCCCCCCCCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHH
Q 014990 118 ESDRALGIPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTA 197 (415)
Q Consensus 118 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 197 (415)
+|+.|+|||...-++.+ .+.+. + -+.+.+.+|||+|++++|||.+|.-
T Consensus 172 -RPrYp~IpG~~Ey~ITS-DDlFs-l------------~~~PGkTLvVGa~YVaLECAgFL~g----------------- 219 (503)
T KOG4716|consen 172 -RPRYPDIPGAKEYGITS-DDLFS-L------------PYEPGKTLVVGAGYVALECAGFLKG----------------- 219 (503)
T ss_pred -CCCCCCCCCceeeeecc-ccccc-c------------cCCCCceEEEccceeeeehhhhHhh-----------------
Confidence 89999999975333332 22221 1 1135567889999999999999984
Q ss_pred hhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCC
Q 014990 198 LEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPM 277 (415)
Q Consensus 198 ~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (415)
.| -+|++..||-.++ .+.+++ .+.+..++.
T Consensus 220 ---fg-~~vtVmVRSI~Lr------------------------------GFDqdm---------ae~v~~~m~------- 249 (503)
T KOG4716|consen 220 ---FG-YDVTVMVRSILLR------------------------------GFDQDM---------AELVAEHME------- 249 (503)
T ss_pred ---cC-CCcEEEEEEeecc------------------------------cccHHH---------HHHHHHHHH-------
Confidence 44 4899999985431 111222 223333322
Q ss_pred CCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCC
Q 014990 278 LGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNH 357 (415)
Q Consensus 278 ~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~ 357 (415)
.+||+|.....|.++. .-+++.+ .|...++. ++++.+-++|+|+||+|..+.. ..+.+ +.
T Consensus 250 --~~Gikf~~~~vp~~Ve--q~~~g~l-~v~~k~t~-------------t~~~~~~~ydTVl~AiGR~~~~-~~l~L-~~ 309 (503)
T KOG4716|consen 250 --ERGIKFLRKTVPERVE--QIDDGKL-RVFYKNTN-------------TGEEGEEEYDTVLWAIGRKALT-DDLNL-DN 309 (503)
T ss_pred --HhCCceeecccceeee--eccCCcE-EEEeeccc-------------ccccccchhhhhhhhhccccch-hhcCC-Cc
Confidence 7799999888888775 3134543 23333321 3444467799999999999854 33434 45
Q ss_pred CCccccCC-CceeeccCCCCCcccCCeeeeeccccCCccchhhhhhhHHHHHhhccc
Q 014990 358 KGIVPNIR-GRVLKNISGDSSQVENGLYVCGWLKRGPTGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 358 ~g~~~~~~-G~i~v~~~~~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g~~~a~~i~~ 413 (415)
.|+..|++ |.|.+|.. .+|+.|+|||+||+..+...++..|+..|+..|.+|..
T Consensus 310 ~GVk~n~ks~KI~v~~~--e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 310 AGVKTNEKSGKIPVDDE--EATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA 364 (503)
T ss_pred cceeecccCCccccChH--HhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence 57777554 88999887 78999999999999988888888999999999998865
No 82
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.81 E-value=3.7e-19 Score=160.71 Aligned_cols=156 Identities=25% Similarity=0.296 Sum_probs=102.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccC------CCCC---------------------------C
Q 014990 23 CVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSG------VAPD---------------------------H 68 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~------~~~~---------------------------~ 68 (415)
+|||||||||++|.+|.+.+ .+ ++|||+++.+|+.+... ..|. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 69999999999999999999 88 99999999888865420 0010 1
Q ss_pred cchHHHHHHHHHHhhccCeEEEeceEece--------EEEeccc-ccccCEEEEccCC-CCCCCCCCCC-CCCCCeeech
Q 014990 69 PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSEL-RQLYHVVVLAYGA-ESDRALGIPG-EDLIGVHSAR 137 (415)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~~-~~~~d~lvlAtG~-~~~~~~~i~g-~~~~~v~~~~ 137 (415)
+...++.+++...++++++++++++.|.. .++.++. ...+|+||+|||. ..|+.|+++| .+. ..++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 12235667888888888888888877632 3555555 4579999999997 4688899999 434 455554
Q ss_pred hhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 138 EFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
++.... ...+|+|+|||+|.||+|++..|.+ .+ ++|++++|++.
T Consensus 158 ~~~~~~------------~~~~k~V~VVG~G~SA~d~a~~l~~--------------------~g-~~V~~~~R~~~ 201 (203)
T PF13738_consen 158 DWRDPE------------DFKGKRVVVVGGGNSAVDIAYALAK--------------------AG-KSVTLVTRSPI 201 (203)
T ss_dssp G-STTG------------GCTTSEEEEE--SHHHHHHHHHHTT--------------------TC-SEEEEEESS--
T ss_pred hcCChh------------hcCCCcEEEEcChHHHHHHHHHHHh--------------------hC-CEEEEEecCCC
Confidence 443211 1268999999999999999999997 34 89999999864
No 83
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1e-17 Score=168.43 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=119.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccCC--------------CCCCc--------chH
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGV--------------APDHP--------ETK 72 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~~--------------~~~~~--------~~~ 72 (415)
..+.++|+|||||++||++|.+|.+.+ .. ++|||+++.+||.+.+.. .|.++ ...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~ 82 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFA 82 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcc
Confidence 457889999999999999999999999 66 999999999998754421 11111 112
Q ss_pred HHHHHHHHHhhccCeE----EEeceEe--------ceEEEeccccc---ccCEEEEccCC-CCCCCCCCCCCC--CCCee
Q 014990 73 IVINQFSRVVQHERCS----FFGNVTL--------GSSVSLSELRQ---LYHVVVLAYGA-ESDRALGIPGED--LIGVH 134 (415)
Q Consensus 73 ~~~~~~~~~~~~~~~~----~~~~~~v--------~~~v~~~~~~~---~~d~lvlAtG~-~~~~~~~i~g~~--~~~v~ 134 (415)
.+.+++...++.++.. +...+.+ ...++.++... .+|.||+|||. ..|..|+++|.+ ...++
T Consensus 83 ~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~ 162 (443)
T COG2072 83 EIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRIL 162 (443)
T ss_pred cHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEE
Confidence 3556666666666543 2222222 12344444442 39999999997 569999999977 44566
Q ss_pred echhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 135 SAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
|+.++.+.. ...+|+|+|||+|+||++++.+|.+ .+ ++|+++.|++.
T Consensus 163 HS~~~~~~~------------~~~GKrV~VIG~GaSA~di~~~l~~--------------------~g-a~vt~~qRs~~ 209 (443)
T COG2072 163 HSADWPNPE------------DLRGKRVLVIGAGASAVDIAPELAE--------------------VG-ASVTLSQRSPP 209 (443)
T ss_pred chhcCCCcc------------ccCCCeEEEECCCccHHHHHHHHHh--------------------cC-CeeEEEecCCC
Confidence 776654321 2289999999999999999999997 45 89999999964
Q ss_pred c
Q 014990 215 V 215 (415)
Q Consensus 215 ~ 215 (415)
.
T Consensus 210 ~ 210 (443)
T COG2072 210 H 210 (443)
T ss_pred c
Confidence 4
No 84
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.77 E-value=2.8e-17 Score=164.18 Aligned_cols=286 Identities=17% Similarity=0.165 Sum_probs=175.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc---ccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe---
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV---RSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL--- 95 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--- 95 (415)
++|||+|+||+++|..|++..++.+++++.......... .+................. .....++.+..++.+
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 589999999999999999988778888877664422111 1111011111111111111 113446766665544
Q ss_pred ---ceEEEecccccccCEEEEccCCCCCCCCCCCCCCCCCeeechhh--HHHhcCCCCCCCCCCCCCCCCeEEEEcCChh
Q 014990 96 ---GSSVSLSELRQLYHVVVLAYGAESDRALGIPGEDLIGVHSAREF--VWWYNGHPDGKNLSPDLKSTDTAVILGQGNV 170 (415)
Q Consensus 96 ---~~~v~~~~~~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~s 170 (415)
.+.+...++...||+|++|||+ .+..++ +....++++.... ...+... ....++|+|||+|..
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~vvG~G~~ 147 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGA-RPRPPP--ISDWEGVVTLRLREDAEALKGG---------AEPPKDVVVVGAGPI 147 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCC-cccCCC--ccccCceEEECCHHHHHHHHHH---------HhccCeEEEECCcHH
Confidence 2234555556689999999999 556555 4444444443322 2222211 112589999999999
Q ss_pred HHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHH
Q 014990 171 ALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIREDDLIKSPTDEE 250 (415)
Q Consensus 171 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~ 250 (415)
|+++|..+.+ .| .+|+++.+.+.+......
T Consensus 148 gle~A~~~~~--------------------~G-~~v~l~e~~~~~~~~~~~----------------------------- 177 (415)
T COG0446 148 GLEAAEAAAK--------------------RG-KKVTLIEAADRLGGQLLD----------------------------- 177 (415)
T ss_pred HHHHHHHHHH--------------------cC-CeEEEEEcccccchhhhh-----------------------------
Confidence 9999999996 34 689999888755322210
Q ss_pred hhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCce
Q 014990 251 EMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEF 330 (415)
Q Consensus 251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~ 330 (415)
+.....+.+.+. ..||+++++..+.++. . ..+...... .. ...+
T Consensus 178 ----~~~~~~~~~~l~-------------~~gi~~~~~~~~~~i~--~-~~~~~~~~~-~~---------------~~~~ 221 (415)
T COG0446 178 ----PEVAEELAELLE-------------KYGVELLLGTKVVGVE--G-KGNTLVVER-VV---------------GIDG 221 (415)
T ss_pred ----HHHHHHHHHHHH-------------HCCcEEEeCCceEEEE--c-ccCcceeeE-EE---------------EeCC
Confidence 111112222332 5679999999988886 3 222221110 00 1233
Q ss_pred EEEecCeeEEeeccCCccCCCCcccCCCC-ccccCCCceeeccCCCCCcc-cCCeeeeeccccCC---------ccchhh
Q 014990 331 EDLDCGMVLKSIGYKSVPVNGLPFDNHKG-IVPNIRGRVLKNISGDSSQV-ENGLYVCGWLKRGP---------TGIIAT 399 (415)
Q Consensus 331 ~~i~~D~vi~atG~~p~~~~~~~~~~~~g-~~~~~~G~i~v~~~~~~~t~-~p~vfaiGD~~~~~---------~~~~~~ 399 (415)
..+++|++++++|.+|+. .+....+ .....+|.+.+|+. ++++ .++||++|||+..+ ......
T Consensus 222 ~~~~~d~~~~~~g~~p~~----~l~~~~~~~~~~~~g~i~v~~~--~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~ 295 (415)
T COG0446 222 EEIKADLVIIGPGERPNV----VLANDALPGLALAGGAVLVDER--GGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAI 295 (415)
T ss_pred cEEEeeEEEEeecccccH----HHHhhCccceeccCCCEEEccc--cccCCCCCEEeccceEeeecccCCceeeeechhh
Confidence 479999999999999975 2323332 14566789999987 6676 99999999987422 223346
Q ss_pred hhhhHHHHHhhcc
Q 014990 400 NLYCAEETVSSLS 412 (415)
Q Consensus 400 a~~~g~~~a~~i~ 412 (415)
+..+++.++.++.
T Consensus 296 a~~~~~i~~~~~~ 308 (415)
T COG0446 296 AVAAGRIAAENIA 308 (415)
T ss_pred HhhhhHHHHHHhc
Confidence 7888888887765
No 85
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=1.4e-17 Score=165.43 Aligned_cols=150 Identities=23% Similarity=0.336 Sum_probs=109.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC--------C---------------CCCC-----
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG--------V---------------APDH----- 68 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~--------~---------------~~~~----- 68 (415)
+..++|+|||||+|||.+|..|.+.| ++++++||.+.+||++.|. . .+++
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~ 81 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPER 81 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCccc
Confidence 35789999999999999999999999 9999999999999987664 0 0111
Q ss_pred -----cchHHHHHHHHHHhhccCe--EEEeceEece---------EEEeccc-----ccccCEEEEccCCCC-CCCCCCC
Q 014990 69 -----PETKIVINQFSRVVQHERC--SFFGNVTLGS---------SVSLSEL-----RQLYHVVVLAYGAES-DRALGIP 126 (415)
Q Consensus 69 -----~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~---------~v~~~~~-----~~~~d~lvlAtG~~~-~~~~~i~ 126 (415)
+...++++++...++++++ .+..++.+.+ .+...+. ..-||.|++|||... |+.|.++
T Consensus 82 ~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~ 161 (448)
T KOG1399|consen 82 DPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIP 161 (448)
T ss_pred CcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCC
Confidence 2223788899999998875 3444553211 1222221 224899999999854 8888888
Q ss_pred CC--C--CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhc
Q 014990 127 GE--D--LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 127 g~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
|. + ...+.|+.+|.. +....+|+|+|||.|+||+|++.++++
T Consensus 162 g~~~~~f~G~~iHS~~Yk~------------~e~f~~k~VlVIG~g~SG~DIs~d~~~ 207 (448)
T KOG1399|consen 162 GPGIESFKGKIIHSHDYKS------------PEKFRDKVVLVVGCGNSGMDISLDLLR 207 (448)
T ss_pred CCchhhcCCcceehhhccC------------cccccCceEEEECCCccHHHHHHHHHH
Confidence 83 2 345667666551 113378999999999999999999885
No 86
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.74 E-value=6.2e-17 Score=157.20 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=98.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC---CccccC--------------CCC---------------
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF---GLVRSG--------------VAP--------------- 66 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g---g~~~~~--------------~~~--------------- 66 (415)
.+++++||.||++|+.|..|...+ ..++..+|+.+.+. |++..+ ..|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCC
Confidence 368999999999999999999887 68999999887532 211111 000
Q ss_pred ---------CCcchHHHHHHHHHHhhccCeEEEeceEec------------eEEEec-----ccccccCEEEEccCCCCC
Q 014990 67 ---------DHPETKIVINQFSRVVQHERCSFFGNVTLG------------SSVSLS-----ELRQLYHVVVLAYGAESD 120 (415)
Q Consensus 67 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~v~~~-----~~~~~~d~lvlAtG~~~~ 120 (415)
..+...++.+++++.+++....+..+..|. ..|.+. .....++.||||||. .|
T Consensus 81 l~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~-~P 159 (341)
T PF13434_consen 81 LYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGG-QP 159 (341)
T ss_dssp HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE-----EE
T ss_pred hhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCC-CC
Confidence 122334566778888877764455555541 234431 122368999999996 67
Q ss_pred CCCCCC-CCC-CCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHh
Q 014990 121 RALGIP-GED-LIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTAL 198 (415)
Q Consensus 121 ~~~~i~-g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~ 198 (415)
..|..- ... .+.++|+.++....... ..+++|+|||||.||.|++..|.+
T Consensus 160 ~iP~~~~~~~~~~~v~Hss~~~~~~~~~----------~~~~~V~VVGgGQSAAEi~~~L~~------------------ 211 (341)
T PF13434_consen 160 RIPEWFQDLPGSPRVFHSSEYLSRIDQS----------LAGKRVAVVGGGQSAAEIFLDLLR------------------ 211 (341)
T ss_dssp ---GGGGGGTT-TTEEEGGGHHHHHT---------------EEEEEE-SSHHHHHHHHHHHH------------------
T ss_pred CCCcchhhcCCCCCEEEehHhhhccccc----------cCCCeEEEECCcHhHHHHHHHHHh------------------
Confidence 776542 233 37899999988766431 268999999999999999999986
Q ss_pred hcCCcceEEEEeecCcc
Q 014990 199 EGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 199 ~~~~~~~v~l~~r~~~~ 215 (415)
.....+|++++|+..+
T Consensus 212 -~~~~~~V~~i~R~~~~ 227 (341)
T PF13434_consen 212 -RGPEAKVTWISRSPGF 227 (341)
T ss_dssp -H-TTEEEEEEESSSS-
T ss_pred -CCCCcEEEEEECCCcc
Confidence 2233689999999543
No 87
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.66 E-value=1.1e-14 Score=138.83 Aligned_cols=305 Identities=15% Similarity=0.134 Sum_probs=174.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC---CCccccC--------------CCC------------
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP---FGLVRSG--------------VAP------------ 66 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~---gg~~~~~--------------~~~------------ 66 (415)
+.+..+++.||-||+.|+.|..|...+ +.++..+|+.+.+ .|++..+ ..|
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHH
Confidence 356789999999999999999999887 4778999999652 2221111 000
Q ss_pred ------------CCcchHHHHHHHHHHhhccCeEEEeceEece----------E--EEeccc-ccccCEEEEccCCCCCC
Q 014990 67 ------------DHPETKIVINQFSRVVQHERCSFFGNVTLGS----------S--VSLSEL-RQLYHVVVLAYGAESDR 121 (415)
Q Consensus 67 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----------~--v~~~~~-~~~~d~lvlAtG~~~~~ 121 (415)
.+....++-++.++.+... -..+.+..|.. . +...+. ...++.|||++|. +|+
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~-~P~ 158 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGT-QPY 158 (436)
T ss_pred cchHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCC-CcC
Confidence 1123345556667776665 44444554421 0 112222 3468899999999 566
Q ss_pred CCC-CCCCCCCCeeechhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhc
Q 014990 122 ALG-IPGEDLIGVHSAREFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEG 200 (415)
Q Consensus 122 ~~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 200 (415)
+|+ +..+..+.++|+.+|...... +...+.|+|||+|.||.|+..+|......
T Consensus 159 IP~~f~~l~~~~vfHss~~~~~~~~----------~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~---------------- 212 (436)
T COG3486 159 IPPCFRSLIGERVFHSSEYLERHPE----------LLQKRSVTVIGSGQSAAEIFLDLLNSQPP---------------- 212 (436)
T ss_pred CChHHhCcCccceeehHHHHHhhHH----------hhcCceEEEEcCCccHHHHHHHHHhCCCC----------------
Confidence 654 455556789999988864432 21334599999999999999999861110
Q ss_pred CCcceEEEEeecCccc----CCCCH---------------HHH-HHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHH
Q 014990 201 SSIRKVYLVGRRGPVQ----AACTA---------------KEL-REILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRR 260 (415)
Q Consensus 201 ~~~~~v~l~~r~~~~~----~~~~~---------------~~l-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 260 (415)
...++.|++|+.... .+|.. ++. ++++.... +....... .+-.+
T Consensus 213 -~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~---------~~YkgI~~------~ti~~ 276 (436)
T COG3486 213 -QDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQR---------LLYKGISF------DTIEE 276 (436)
T ss_pred -cCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcC---------ccccccCH------HHHHH
Confidence 112589999984321 11211 111 11111100 00011111 11123
Q ss_pred HHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEE
Q 014990 261 VYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLK 340 (415)
Q Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~ 340 (415)
+++.|+.-... .....+.+...+++..++ ...+|. -.+.+... .+++.+++++|+||+
T Consensus 277 Iy~~lY~~~l~------~~~~~v~l~~~~ev~~~~--~~G~g~-~~l~~~~~-------------~~~~~~t~~~D~vIl 334 (436)
T COG3486 277 IYDLLYEQSLG------GRKPDVRLLSLSEVQSVE--PAGDGR-YRLTLRHH-------------ETGELETVETDAVIL 334 (436)
T ss_pred HHHHHHHHHhc------CCCCCeeeccccceeeee--cCCCce-EEEEEeec-------------cCCCceEEEeeEEEE
Confidence 44444433221 124567777888888887 412332 23444332 156777999999999
Q ss_pred eeccCCccCCCCcccCC--CCccccCCCceeeccCCCCC---cccCCeeeeeccc
Q 014990 341 SIGYKSVPVNGLPFDNH--KGIVPNIRGRVLKNISGDSS---QVENGLYVCGWLK 390 (415)
Q Consensus 341 atG~~p~~~~~~~~~~~--~g~~~~~~G~i~v~~~~~~~---t~~p~vfaiGD~~ 390 (415)
||||+... +. |.+. ..+..+++|...++.+-... ...-.||+.|-+.
T Consensus 335 ATGY~~~~-P~--fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ 386 (436)
T COG3486 335 ATGYRRAV-PS--FLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAEL 386 (436)
T ss_pred ecccccCC-ch--hhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccc
Confidence 99999633 21 2221 23456777887777652111 1224699998654
No 88
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.58 E-value=3.7e-15 Score=133.55 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=97.6
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc--------chHHHHHHHHHHhhccCeEEEece
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP--------ETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
.+|||||.||.+||..|+..-|..+|.|+..++.+-....|.....+. ...+.-.+++.++++. +++. +
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~v-~~~~--s 78 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLNDV-VTWD--S 78 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcCccccchhhhcccHHHHHHhh-hhhc--c
Confidence 589999999999999999999999999998776433222211000000 0001111122222220 1110 0
Q ss_pred EeceEEEeccc-ccccCEEEEccCCCCCCCCCCCCCCCCCeeec-----hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcC
Q 014990 94 TLGSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGEDLIGVHSA-----REFVWWYNGHPDGKNLSPDLKSTDTAVILGQ 167 (415)
Q Consensus 94 ~v~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~ 167 (415)
. ...+.++++ +..|++|++|+|. .|+. ..+|.+ +.+.-- .+.+.+ .+.+.|.|.|+|.
T Consensus 79 ~-ehci~t~~g~~~ky~kKOG~tg~-kPkl-q~E~~n-~~Iv~irDtDsaQllq~------------kl~kaK~Vlilgn 142 (334)
T KOG2755|consen 79 S-EHCIHTQNGEKLKYFKLCLCTGY-KPKL-QVEGIN-PKIVGIRDTDSAQLLQC------------KLVKAKIVLILGN 142 (334)
T ss_pred c-cceEEecCCceeeEEEEEEecCC-Ccce-eecCCC-ceEEEEecCcHHHHHHH------------HHhhcceEEEEec
Confidence 0 112233444 3479999999999 5554 445422 122211 111111 1347899999999
Q ss_pred ChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHH
Q 014990 168 GNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREI 227 (415)
Q Consensus 168 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~ 227 (415)
|-++.|.+.++.- -+|+|......+-+.|+++-..+.
T Consensus 143 Ggia~El~yElk~-----------------------~nv~w~ikd~~IsaTFfdpGaaef 179 (334)
T KOG2755|consen 143 GGIAMELTYELKI-----------------------LNVTWKIKDEGISATFFDPGAAEF 179 (334)
T ss_pred CchhHHHHHHhhc-----------------------ceeEEEecchhhhhcccCccHHHH
Confidence 9999999999874 489999988888888877554443
No 89
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.58 E-value=1.5e-13 Score=133.04 Aligned_cols=82 Identities=16% Similarity=0.309 Sum_probs=58.7
Q ss_pred CCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCC--CCCcccCCeeeeeccccCCccchhhhhhhH
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISG--DSSQVENGLYVCGWLKRGPTGIIATNLYCA 404 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~--~~~t~~p~vfaiGD~~~~~~~~~~~a~~~g 404 (415)
.|+..++++|+|++++|..|..-. -......|+..+++|++.-.+.. --.++.+|||.+|-+ .+|..+. .++.||
T Consensus 457 ~g~~~e~~~DLVVLa~Gmep~~g~-~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~-~siaqa 533 (622)
T COG1148 457 TGEVKEIEADLVVLATGMEPSEGA-KKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIA-DSIAQA 533 (622)
T ss_pred CccceecccceEEEeeccccCcch-HHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHH-HHHHHh
Confidence 466678999999999999984311 11334567888888888766432 035788999999955 5787766 578888
Q ss_pred HHHHhhc
Q 014990 405 EETVSSL 411 (415)
Q Consensus 405 ~~~a~~i 411 (415)
+.||...
T Consensus 534 ~aAA~kA 540 (622)
T COG1148 534 KAAAAKA 540 (622)
T ss_pred HHHHHHH
Confidence 8877643
No 90
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.58 E-value=6.4e-15 Score=135.49 Aligned_cols=296 Identities=15% Similarity=0.127 Sum_probs=157.7
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCC--------CCCcchHHHH----HHHHHHhh
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVA--------PDHPETKIVI----NQFSRVVQ 83 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~--------~~~~~~~~~~----~~~~~~~~ 83 (415)
.++..+|+|||||.+|+++|..+.++-+..+|.|+|+.+..+-+..+.+. .......+++ ..+.+..+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~ekv~ 115 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIKEKVK 115 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHHHHHH
Confidence 35788999999999999999999998877899999998764322111110 0000000000 01111111
Q ss_pred ccCeEEEeceEeceEEEeccc-ccccCEEEEccCCCCCCCCCCCCC----CCCCeee--chhhHHH----hcCCCCCCCC
Q 014990 84 HERCSFFGNVTLGSSVSLSEL-RQLYHVVVLAYGAESDRALGIPGE----DLIGVHS--AREFVWW----YNGHPDGKNL 152 (415)
Q Consensus 84 ~~~~~~~~~~~v~~~v~~~~~-~~~~d~lvlAtG~~~~~~~~i~g~----~~~~v~~--~~~~~~~----~~~~~~~~~~ 152 (415)
.++. ..| .+.++.+ +++||++|+|+|. +-+.-.|+|+ +.|++.+ +..+.+. +.......+.
T Consensus 116 ~f~P--~~N-----~v~t~gg~eIsYdylviA~Gi-ql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAI 187 (446)
T KOG3851|consen 116 EFNP--DKN-----TVVTRGGEEISYDYLVIAMGI-QLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAI 187 (446)
T ss_pred hcCC--CcC-----eEEccCCcEEeeeeEeeeeec-eeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceE
Confidence 1110 111 2334444 4699999999998 3333355553 3455543 2222221 1111000000
Q ss_pred CCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcc-eEEEEeecCcccCCCCHHHHHHHHcCC
Q 014990 153 SPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIR-KVYLVGRRGPVQAACTAKELREILGIK 231 (415)
Q Consensus 153 ~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~r~~~~~~~~~~~~l~~~~~~~ 231 (415)
- -.+...|=--|+..-.+-++.... ++.|.+ ++.++.... +..-|..+...
T Consensus 188 f--TfPntpiKCAGAPQKi~yise~y~-------------------Rk~gvRd~a~iiy~Ts-l~~iFgVk~Y~------ 239 (446)
T KOG3851|consen 188 F--TFPNTPIKCAGAPQKIMYISESYF-------------------RKRGVRDNANIIYNTS-LPTIFGVKHYA------ 239 (446)
T ss_pred E--ecCCCccccCCCchhhhhhhHHHH-------------------HHhCccccccEEEecC-ccceecHHHHH------
Confidence 0 001122222344444444444433 344443 344443331 22223333221
Q ss_pred CeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 232 NLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 232 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
+.|.+... ++.|.+.+.....++. . +.+ ...|++
T Consensus 240 -------------------------------~AL~k~~~---------~rni~vn~krnLiEV~--~--~~~--~AvFe~ 273 (446)
T KOG3851|consen 240 -------------------------------DALEKVIQ---------ERNITVNYKRNLIEVR--T--NDR--KAVFEN 273 (446)
T ss_pred -------------------------------HHHHHHHH---------hcceEeeeccceEEEe--c--cch--hhHHHh
Confidence 22222222 5678888888777876 4 222 123333
Q ss_pred eeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCCCceeeccCCCCCcccCCeeeeecccc
Q 014990 312 TALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIRGRVLKNISGDSSQVENGLYVCGWLKR 391 (415)
Q Consensus 312 ~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~ 391 (415)
. + ..|..++++++++......+++. +...+. ..+..|++.||..+.+++.+||||+||||.+
T Consensus 274 L-------~-----kPG~t~ei~yslLHv~Ppms~pe-----~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n 335 (446)
T KOG3851|consen 274 L-------D-----KPGVTEEIEYSLLHVTPPMSTPE-----VLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMN 335 (446)
T ss_pred c-------C-----CCCceeEEeeeeeeccCCCCChh-----hhhcCc-ccCcccceecChhhhccccCCCceeeccccC
Confidence 2 1 14777899999999888777654 212222 3455699999998867888999999999998
Q ss_pred CCc-cchhhhhhhHHHHHhhc
Q 014990 392 GPT-GIIATNLYCAEETVSSL 411 (415)
Q Consensus 392 ~~~-~~~~~a~~~g~~~a~~i 411 (415)
.|+ +..+.+..|...+.+||
T Consensus 336 ~PnsKTaAAvaaq~~vv~~nl 356 (446)
T KOG3851|consen 336 LPNSKTAAAVAAQSPVVDKNL 356 (446)
T ss_pred CCchhhHHHHHhcCchhhhhH
Confidence 775 33334445555555554
No 91
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.55 E-value=3.5e-15 Score=134.29 Aligned_cols=103 Identities=22% Similarity=0.323 Sum_probs=63.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCc-----c-hHHHH--H--HHHHHhhccCeEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHP-----E-TKIVI--N--QFSRVVQHERCSFF 90 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~-----~-~~~~~--~--~~~~~~~~~~~~~~ 90 (415)
+||||||||||++||.+|++.+ .+++|+|+.+..+.... .. +... . ..... . .+.+.+++.++++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~--~~v~ii~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPG--AKVLIIEKSPGTPYNSG-CI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEESSSSHHHHHHS-HH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCC--CeEEEEecccccccccc-cc-cccccccccccccccccccccccccccccceEEEe
Confidence 6999999999999999999988 99999988764222100 00 0000 0 00111 1 33434455677774
Q ss_pred eceEe-c-----eE-------E---E-ecccccccCEEEEccCCCCCCCCCCCCC
Q 014990 91 GNVTL-G-----SS-------V---S-LSELRQLYHVVVLAYGAESDRALGIPGE 128 (415)
Q Consensus 91 ~~~~v-~-----~~-------v---~-~~~~~~~~d~lvlAtG~~~~~~~~i~g~ 128 (415)
.+..+ . .. + . .+.....||+||+|||+ .++.|++||.
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~-~~~~~~i~g~ 130 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGS-RPRTPNIPGE 130 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTE-EEEEESSTTT
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCcc-ccceeecCCC
Confidence 44332 1 10 1 0 11223579999999998 6888888986
No 92
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.43 E-value=1.6e-12 Score=123.62 Aligned_cols=292 Identities=14% Similarity=0.175 Sum_probs=164.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-CC-------ccccCCCCC-----------------Ccch
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-FG-------LVRSGVAPD-----------------HPET 71 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-gg-------~~~~~~~~~-----------------~~~~ 71 (415)
+++..-+|||+|.|..+++.......+..+|.+|...+.. +. +|.|+- |. +.++
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecC
Confidence 4566779999999999888877777677888888666442 11 122221 10 1111
Q ss_pred HHHHHHHHHH--hhccCeEEEeceEe------ceEEEecccc-cccCEEEEccCCCCCCCCCC-CCC--C---CCCeeec
Q 014990 72 KIVINQFSRV--VQHERCSFFGNVTL------GSSVSLSELR-QLYHVVVLAYGAESDRALGI-PGE--D---LIGVHSA 136 (415)
Q Consensus 72 ~~~~~~~~~~--~~~~~~~~~~~~~v------~~~v~~~~~~-~~~d~lvlAtG~~~~~~~~i-~g~--~---~~~v~~~ 136 (415)
+.+.-.-.++ ..+-|+-+..+-.+ .+.|.+.++. +.||.++||||. .|+..++ ... + ...++..
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~-~Pk~l~~~~~A~~evk~kit~fr~ 333 (659)
T KOG1346|consen 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGV-RPKKLQVFEEASEEVKQKITYFRY 333 (659)
T ss_pred CcceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCc-CcccchhhhhcCHHhhhheeEEec
Confidence 1111111111 12234444444333 2235555554 589999999999 5665443 211 1 1122222
Q ss_pred hhhHHHhcCCCCCCCCCCCCCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEE-eecCcc
Q 014990 137 REFVWWYNGHPDGKNLSPDLKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLV-GRRGPV 215 (415)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-~r~~~~ 215 (415)
..-+.++... +...++|.|||+|..|-|+|..|.+.. +..+. +|+-+ .-..+.
T Consensus 334 p~DF~rlek~---------~aek~siTIiGnGflgSELacsl~rk~----------------r~~g~-eV~QvF~Ek~nm 387 (659)
T KOG1346|consen 334 PADFKRLEKG---------LAEKQSITIIGNGFLGSELACSLKRKY----------------RNEGV-EVHQVFEEKYNM 387 (659)
T ss_pred chHHHHHHHh---------hhhcceEEEEcCcchhhhHHHHHHHhh----------------hccCc-EEEEeecccCCh
Confidence 2222233322 224589999999999999999998611 01232 33322 211110
Q ss_pred cCCCCHHHHHHHHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEecccccccc
Q 014990 216 QAACTAKELREILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFL 295 (415)
Q Consensus 216 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~ 295 (415)
..+..+.+.+.-++.++ +.||.+..+..+..+.
T Consensus 388 ----------------------------------~kiLPeyls~wt~ekir-------------~~GV~V~pna~v~sv~ 420 (659)
T KOG1346|consen 388 ----------------------------------EKILPEYLSQWTIEKIR-------------KGGVDVRPNAKVESVR 420 (659)
T ss_pred ----------------------------------hhhhHHHHHHHHHHHHH-------------hcCceeccchhhhhhh
Confidence 00111222222333443 6688888777766664
Q ss_pred ccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCCCcccCCCCccccCC-CceeeccCC
Q 014990 296 ESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNGLPFDNHKGIVPNIR-GRVLKNISG 374 (415)
Q Consensus 296 ~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~~~~~~~~g~~~~~~-G~i~v~~~~ 374 (415)
. ..+++ -+.+. +| .++..|+|+.|+|-.||. .+....|+..+++ |-+.+|...
T Consensus 421 --~-~~~nl-~lkL~----------------dG--~~l~tD~vVvavG~ePN~----ela~~sgLeiD~~lGGfrvnaeL 474 (659)
T KOG1346|consen 421 --K-CCKNL-VLKLS----------------DG--SELRTDLVVVAVGEEPNS----ELAEASGLEIDEKLGGFRVNAEL 474 (659)
T ss_pred --h-hccce-EEEec----------------CC--CeeeeeeEEEEecCCCch----hhcccccceeecccCcEEeehee
Confidence 2 12222 12221 23 389999999999999987 5667788888877 777788753
Q ss_pred CCCcccCCeeeeeccccCCccch--------hhhhhhHHHHHhhcc
Q 014990 375 DSSQVENGLYVCGWLKRGPTGII--------ATNLYCAEETVSSLS 412 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~~~~~~~--------~~a~~~g~~~a~~i~ 412 (415)
.--.|||++||++.-..++. .+|.-.|+.|.+|..
T Consensus 475 ---~ar~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMt 517 (659)
T KOG1346|consen 475 ---KARENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMT 517 (659)
T ss_pred ---ecccceeeecchhhhhcccccceeccccccceeeceecccccc
Confidence 45689999999873222111 156667777776654
No 93
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.29 E-value=9.2e-10 Score=108.16 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=37.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC-CCceEEEEcCCCCCCCccccC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH-QEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g-~~~~v~lie~~~~~gg~~~~~ 63 (415)
+++|+|||||++|+++|.+|.+.. +...|.|||+.+.+|.-+.|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence 478999999999999999999988 334599999998877655443
No 94
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.27 E-value=7.8e-11 Score=117.35 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=31.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|.+|+++|..|++.+ .+|+|||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 478999999999999999999999 9999999874
No 95
>PRK09897 hypothetical protein; Provisional
Probab=99.07 E-value=4.9e-09 Score=107.41 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=34.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+++|+||||||+|+++|.+|.+.+...+|+|||++..+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 368999999999999999999877557999999987766
No 96
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.88 E-value=1.6e-08 Score=97.19 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=72.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc------------------------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR------------------------------------ 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~------------------------------------ 61 (415)
..++|+|||||||||.||..+++.| .+|+|||+.+.+|.-+.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 5689999999999999999999999 99999999977543110
Q ss_pred -----------cC----------CCCCCcchHHHHHHHHHHhhccCeEEEeceEec--------eEEEeccc-ccccCEE
Q 014990 62 -----------SG----------VAPDHPETKIVINQFSRVVQHERCSFFGNVTLG--------SSVSLSEL-RQLYHVV 111 (415)
Q Consensus 62 -----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~v~~~~~-~~~~d~l 111 (415)
++ ..|.-..-..+++.+...+++.+++++.++.+. ..+++.++ .+.+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 00 011111223566777788888899999888762 23555566 4689999
Q ss_pred EEccCC
Q 014990 112 VLAYGA 117 (415)
Q Consensus 112 vlAtG~ 117 (415)
|||||-
T Consensus 160 ilAtGG 165 (408)
T COG2081 160 ILATGG 165 (408)
T ss_pred EEecCC
Confidence 999995
No 97
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.83 E-value=1.5e-06 Score=86.02 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=30.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+|++|+++|..|.+.+ .+|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g--~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAG--KKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CCEEEEeCCC
Confidence 57999999999999999999998 9999999874
No 98
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.77 E-value=2.7e-08 Score=98.96 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=53.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc----------------------cc---------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV----------------------RS--------------- 62 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~----------------------~~--------------- 62 (415)
|+|+|||||||||.||..+++.+ .+|+|+|+++.+|.-+ .|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 68999999999999999999999 9999999997644210 00
Q ss_pred -----------CC----------CCCCcchHHHHHHHHHHhhccCeEEEeceEece---------EEEe-cccccccCEE
Q 014990 63 -----------GV----------APDHPETKIVINQFSRVVQHERCSFFGNVTLGS---------SVSL-SELRQLYHVV 111 (415)
Q Consensus 63 -----------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------~v~~-~~~~~~~d~l 111 (415)
++ .|.-....++++.+...+++.++++++++.+.. .+.. ......+|.|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 00 000012235556677777888999998887632 2344 3334578999
Q ss_pred EEccCC
Q 014990 112 VLAYGA 117 (415)
Q Consensus 112 vlAtG~ 117 (415)
|||||.
T Consensus 159 ILAtGG 164 (409)
T PF03486_consen 159 ILATGG 164 (409)
T ss_dssp EE----
T ss_pred EEecCC
Confidence 999997
No 99
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.69 E-value=9.2e-08 Score=89.53 Aligned_cols=39 Identities=31% Similarity=0.408 Sum_probs=35.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+||||||||++||.+|++.| .+|+|+|+...+|+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Gg 62 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGG 62 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCC
Confidence 4689999999999999999999998 99999999987765
No 100
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.57 E-value=3.9e-07 Score=85.12 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=41.9
Q ss_pred hhhhhhccccc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 4 ARAWLSRSFTA-LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
||..+.+.+.. +....++|+||||||||+++|..|++.+ .+|+|+|++..+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 5 SRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGG 58 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 44555554321 2235789999999999999999999999 99999999988764
No 101
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.55 E-value=5.6e-07 Score=89.85 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-C---------CCCCC-------------------
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS-G---------VAPDH------------------- 68 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~-~---------~~~~~------------------- 68 (415)
..++|+||||||||.+||..|++.| ++|+|+|+.+.+|..... + ..+..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 4689999999999999999999999 999999998776542211 0 00000
Q ss_pred -----------c-chHHHHHHHHHHhhccCeEEEeceEeceEEEecc----------cccccCEEEEccCCC
Q 014990 69 -----------P-ETKIVINQFSRVVQHERCSFFGNVTLGSSVSLSE----------LRQLYHVVVLAYGAE 118 (415)
Q Consensus 69 -----------~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~~~----------~~~~~d~lvlAtG~~ 118 (415)
. ....+-..+.+.+.+.+..++.++.+......++ .+..+++||.|.|+.
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~ 151 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcc
Confidence 0 0112223456677778888888877643222221 144799999999983
No 102
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.50 E-value=5.1e-07 Score=85.81 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=63.7
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc-------------------------------------
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS------------------------------------- 62 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~------------------------------------- 62 (415)
++|+|||||+||+++|..|++.| .+|+|+|+.+.++.....
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 58999999999999999999999 999999998654321000
Q ss_pred CCCCC--C-cchHHHHHHHHHHhhccCeEEEeceEece--------EEEecc--cccccCEEEEccCCC
Q 014990 63 GVAPD--H-PETKIVINQFSRVVQHERCSFFGNVTLGS--------SVSLSE--LRQLYHVVVLAYGAE 118 (415)
Q Consensus 63 ~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--------~v~~~~--~~~~~d~lvlAtG~~ 118 (415)
..... + .....+.+.+.+.+.+.++++..++.+.. .+.... ....+|+||+|+|..
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSR 147 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcc
Confidence 00000 0 11223445566667777888877766532 122121 234789999999984
No 103
>PLN02463 lycopene beta cyclase
Probab=98.43 E-value=1.9e-06 Score=87.09 Aligned_cols=100 Identities=24% Similarity=0.255 Sum_probs=63.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC-----CCccc-----cCC-------CC-------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP-----FGLVR-----SGV-------AP------------- 66 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~-----gg~~~-----~~~-------~~------------- 66 (415)
...++|+||||||||+++|..|++.| .+|+|+|+.+.. ++.+. .++ .+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~G--l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEAG--LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHCC--CeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 35689999999999999999999998 999999997532 11100 000 00
Q ss_pred ---CC--cchHHHHHHHHHHhhccCeEEEeceEec-------eEEEeccc-ccccCEEEEccCCC
Q 014990 67 ---DH--PETKIVINQFSRVVQHERCSFFGNVTLG-------SSVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 67 ---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------~~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
.+ ....++...+.+.+...++++....... ..++++++ ...+|.||.|+|..
T Consensus 104 ~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 104 LDRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred ccCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 00 1122344455555566678875432221 12444454 35899999999984
No 104
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.42 E-value=3.7e-07 Score=67.07 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=33.6
Q ss_pred EECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc
Q 014990 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (415)
Q Consensus 24 IIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~ 62 (415)
|||||++|+++|..|++.+ .+|+|+|+.+.+||....
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeE
Confidence 8999999999999999998 999999999999987653
No 105
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.42 E-value=1.4e-06 Score=66.20 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=55.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCCCHHHHHHHHcCCCeeEEEccc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAACTAKELREILGIKNLYVHIRED 240 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (415)
+|+|||+|++|+|+|..|.+ .+ .+|+++.|++.+. +..++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--------------------~g-~~vtli~~~~~~~-~~~~~~~---------------- 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--------------------LG-KEVTLIERSDRLL-PGFDPDA---------------- 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--------------------TT-SEEEEEESSSSSS-TTSSHHH----------------
T ss_pred CEEEECcCHHHHHHHHHHHH--------------------hC-cEEEEEeccchhh-hhcCHHH----------------
Confidence 58999999999999999986 34 6999999998764 2222222
Q ss_pred ccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEee
Q 014990 241 DLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEK 311 (415)
Q Consensus 241 ~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~ 311 (415)
+..+.+.+. +.||+++++..+.++. . ++..++ |++++
T Consensus 43 -----------------~~~~~~~l~-------------~~gV~v~~~~~v~~i~--~-~~~~~~-V~~~~ 79 (80)
T PF00070_consen 43 -----------------AKILEEYLR-------------KRGVEVHTNTKVKEIE--K-DGDGVE-VTLED 79 (80)
T ss_dssp -----------------HHHHHHHHH-------------HTTEEEEESEEEEEEE--E-ETTSEE-EEEET
T ss_pred -----------------HHHHHHHHH-------------HCCCEEEeCCEEEEEE--E-eCCEEE-EEEec
Confidence 222223333 5689999999999997 4 233365 76653
No 106
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.37 E-value=1.5e-06 Score=90.91 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=37.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...+|||||+|+||++||..+++.| .+|+|+||.+..||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCccc
Confidence 4679999999999999999999999 99999999988776543
No 107
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.34 E-value=5.1e-07 Score=80.00 Aligned_cols=44 Identities=32% Similarity=0.358 Sum_probs=39.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
...+|+||||||+||+||++|++.+ .+|+|||++-.+||-+..|
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~G 72 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWGG 72 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCccccc
Confidence 4678999999999999999999999 9999999998888765533
No 108
>PRK06847 hypothetical protein; Provisional
Probab=98.34 E-value=4.7e-06 Score=82.46 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g--~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAG--IAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 4678999999999999999999999 99999998753
No 109
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.34 E-value=3.7e-06 Score=84.86 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=34.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|+||||||||++||..|++.| .+|+|+|+.+.++
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCC
Confidence 5689999999999999999999999 9999999986544
No 110
>PLN02661 Putative thiazole synthesis
Probab=98.34 E-value=4.1e-06 Score=80.90 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=34.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||+||++||+.|++. + .+|+|||+...+||
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g--~kV~viEk~~~~GG 130 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPN--VKVAIIEQSVSPGG 130 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCC--CeEEEEecCccccc
Confidence 467999999999999999999976 5 99999999987765
No 111
>PRK10015 oxidoreductase; Provisional
Probab=98.33 E-value=4.1e-06 Score=84.49 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+||||||||++||..|++.| .+|+|||+.+.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCC
Confidence 4689999999999999999999999 999999998654
No 112
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.29 E-value=1e-05 Score=61.40 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=53.6
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...+....+.+.+++.+++++.++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g--~~vtli~~~~~~~--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG--KEVTLIERSDRLL--------PG--FDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--SEEEEEESSSSSS--------TT--SSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhC--cEEEEEeccchhh--------hh--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 6899999999999999999999 9999999988753 11 2235566777888888999999988743
No 113
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.28 E-value=4.6e-06 Score=82.99 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=32.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|+||||||||+++|..|++.| .+|+|+|+.+..++
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCC
Confidence 6999999999999999999998 99999999865543
No 114
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.27 E-value=8.4e-07 Score=78.98 Aligned_cols=44 Identities=36% Similarity=0.487 Sum_probs=35.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
..++|+||||||||++||.+|++.+ .+|++||++..+||....+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~G 59 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWGG 59 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCcccccc
Confidence 5689999999999999999999999 9999999999998876644
No 115
>PRK06834 hypothetical protein; Provisional
Probab=98.22 E-value=1.2e-05 Score=82.35 Aligned_cols=36 Identities=31% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G--~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAG--VDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 4589999999999999999999999 99999998753
No 116
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.21 E-value=8.7e-06 Score=81.33 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+||||||+|+++|..|++.|++++|+|||+.+
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 368999999999999999999996669999999974
No 117
>PRK06184 hypothetical protein; Provisional
Probab=98.19 E-value=1.2e-05 Score=82.97 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=33.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~ 37 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPE 37 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCC
Confidence 4578999999999999999999999 99999999754
No 118
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.18 E-value=1.5e-05 Score=79.33 Aligned_cols=32 Identities=31% Similarity=0.538 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++|+||||||||+++|..|++.| .+|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 58999999999999999999999 999999987
No 119
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.18 E-value=6.6e-06 Score=86.17 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=37.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...++|+|||+|.+|+++|..+++.+ .+|+|||+.+..||..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHG--LKVIVVEKDPVFGGTT 51 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCccc
Confidence 45789999999999999999999999 9999999998777653
No 120
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.18 E-value=1.1e-05 Score=80.62 Aligned_cols=34 Identities=47% Similarity=0.653 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||||++||..|++.| ++|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAG--IQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCC
Confidence 58999999999999999999999 99999998743
No 121
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.16 E-value=1.2e-05 Score=80.51 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=31.3
Q ss_pred EEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 23 CVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|||||+||++||..|++.+ .+|+|+|+.+.+|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccc
Confidence 69999999999999999999 99999999987654
No 122
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.15 E-value=1e-05 Score=84.31 Aligned_cols=40 Identities=28% Similarity=0.365 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...+|||||+|++|+++|..+++.| .+|+|||+.+.+||.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G--~~v~llEk~~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRG--LSTVVVEKAPHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCcc
Confidence 4689999999999999999999999 999999999877764
No 123
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.10 E-value=3.6e-06 Score=84.03 Aligned_cols=42 Identities=26% Similarity=0.465 Sum_probs=39.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||++|++|++.+|+++++|+|+.++.||.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 579999999999999999999999999999999999999865
No 124
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.08 E-value=3.2e-05 Score=77.91 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
+.+++++|||||+.|+..|..+++.| .+|||+|+.+.+- |. ..+++.+.+.+.+++.++.+..++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG--~~VTiie~~~~iL--------p~--~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALG--SKVTVVERGDRIL--------PG--EDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------Cc--CCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 56889999999999999999999999 9999999988642 32 345777888888888778888887763
Q ss_pred eE--------EEeccc---ccccCEEEEccCCCCCCC
Q 014990 97 SS--------VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~~--------v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.. +..++. ...+|+|++|+|. .|+.
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR-~Pn~ 274 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGR-KPNT 274 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCC-ccCC
Confidence 22 222232 2459999999997 4554
No 125
>PRK07190 hypothetical protein; Provisional
Probab=98.08 E-value=2.6e-05 Score=79.92 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+|+++|..|++.| .+|+|||+.+.
T Consensus 3 ~~~~dVlIVGAGPaGL~lA~~Lar~G--i~V~llEr~~~ 39 (487)
T PRK07190 3 TQVTDVVIIGAGPVGLMCAYLGQLCG--LNTVIVDKSDG 39 (487)
T ss_pred CccceEEEECCCHHHHHHHHHHHHcC--CCEEEEeCCCc
Confidence 35689999999999999999999999 99999999854
No 126
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.07 E-value=3.4e-05 Score=78.17 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=65.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+. +.. ..++...+.+.++..+++++.+..+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLG--SKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 4578999999999999999999998 9999999987642 211 123445566667778999888765421
Q ss_pred ------E--EEecccccccCEEEEccCCCCCCC
Q 014990 98 ------S--VSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~--v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
. +..+.....+|.||+|+|. .|..
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~-~p~~ 255 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGR-KPNT 255 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCC-CCCc
Confidence 1 1212223579999999998 4443
No 127
>PLN02697 lycopene epsilon cyclase
Probab=98.05 E-value=3.3e-05 Score=79.47 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+||||||||+++|..|++.| .+|+|||+.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~G--l~V~LIe~~ 140 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLG--LNVGLIGPD 140 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEecCc
Confidence 4689999999999999999999999 999999986
No 128
>PRK08244 hypothetical protein; Provisional
Probab=98.05 E-value=2.5e-05 Score=80.38 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 68999999999999999999999 99999999753
No 129
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.02 E-value=6.2e-06 Score=83.60 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=37.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||+||..|++.|+.++|+|+|+.+.+||...
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 579999999999999999999775589999999999998754
No 130
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.02 E-value=3e-05 Score=80.24 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||||+||+.||..+++.| .+|+|+|+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G--~kV~LiE~~ 36 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMG--AKTLLLTHN 36 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcC--CcEEEEecc
Confidence 4689999999999999999999999 999999987
No 131
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.02 E-value=2.3e-05 Score=84.76 Aligned_cols=36 Identities=28% Similarity=0.531 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+||||||||+++|..|++.+++++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 589999999999999999999844499999999865
No 132
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.01 E-value=3.7e-05 Score=75.77 Aligned_cols=91 Identities=20% Similarity=0.240 Sum_probs=69.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-----------CceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ-----------EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHER 86 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~-----------~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (415)
...+|+||||||.|+.+|..|+..-+ +.+|+|+|+.+.. .|.+ +.++..+..+.+++.|
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I--------Lp~~--~~~l~~~a~~~L~~~G 223 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI--------LPMF--PPKLSKYAERALEKLG 223 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh--------ccCC--CHHHHHHHHHHHHHCC
Confidence 34579999999999999999875441 2499999988864 2432 2356677888899999
Q ss_pred eEEEeceEece----EEEecccc--cccCEEEEccCCC
Q 014990 87 CSFFGNVTLGS----SVSLSELR--QLYHVVVLAYGAE 118 (415)
Q Consensus 87 ~~~~~~~~v~~----~v~~~~~~--~~~d~lvlAtG~~ 118 (415)
+++..++.|.. .++++++. +.++.+|.|+|.+
T Consensus 224 V~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCc
Confidence 99999988733 35555554 7899999999983
No 133
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.98 E-value=5.4e-05 Score=77.15 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLG--SKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3578999999999999999999998 9999999887642 21 1234455666777778899988865521
Q ss_pred ------E--EEeccc---ccccCEEEEccCCCCCCC
Q 014990 98 ------S--VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~--v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
. +...++ ...+|.||+|+|. .|..
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~-~p~~ 271 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGR-KPNT 271 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCC-cccC
Confidence 1 222223 3579999999998 4443
No 134
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.98 E-value=8.3e-06 Score=83.15 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=41.0
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....+++|+|||||.|||+||..|...| .+|+|+|..+++||-..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY 55 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence 3456889999999999999999999999 99999999999999754
No 135
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.97 E-value=6.1e-05 Score=74.72 Aligned_cols=89 Identities=19% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+.. . ..+.+....+.+.+++.+++++.++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g--~~Vtlv~~~~~~l~--------~-~~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAG--KAVTLVDNAASLLA--------S-LMPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCcccc--------h-hCCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 4678999999999999999999998 99999998776421 1 11224455666777778999887765522
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.||+|+|.
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCC
Confidence 1233333 3479999999998
No 136
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.97 E-value=8.7e-06 Score=83.45 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|||||||++||+||..|++.| ++|+|+|+++.+||...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceE
Confidence 5689999999999999999999999 99999999999998543
No 137
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.95 E-value=5.2e-05 Score=75.73 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=65.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+.... ....+...+.+.++..+++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtlv~~~~~~l~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRR--CKVTVIELAATVMGRN---------APPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCcchhhh---------cCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 4578999999999999999999998 9999999887643211 1224445666667778999988776522
Q ss_pred -------EEEecccc-cccCEEEEccCC
Q 014990 98 -------SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 98 -------~v~~~~~~-~~~d~lvlAtG~ 117 (415)
.+...++. ..+|.||+|+|.
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGI 239 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCC
Confidence 12233332 479999999998
No 138
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.94 E-value=7.1e-05 Score=76.54 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=65.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||++|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.++..+++++.++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g--~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFG--VEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 579999999999999999999998 9999999887541 221 2345566667777789999888655221
Q ss_pred ----------EEeccc---ccccCEEEEccCCCCCCC
Q 014990 99 ----------VSLSEL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 99 ----------v~~~~~---~~~~d~lvlAtG~~~~~~ 122 (415)
+...++ ...+|.||+|+|. .|..
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~-~p~~ 283 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGR-RPNT 283 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCC-ccCC
Confidence 111122 2478999999998 4443
No 139
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=9.3e-05 Score=75.39 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLG--TKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3578999999999999999999998 9999999887542 22 1234556667777778999988876522
Q ss_pred ------EEEec-cc---ccccCEEEEccCCCCCCC
Q 014990 98 ------SVSLS-EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ------~v~~~-~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... +. ...+|.|++|+|. .|..
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~-~p~~ 270 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGR-KPRV 270 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCC-ccCC
Confidence 11111 11 3479999999997 4443
No 140
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.90 E-value=7.2e-05 Score=75.75 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+.. . ...++...+.+.+++.+++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l~~--------~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERG--LHPTLIHRSDKINK--------L--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCC--CcEEEEecccccch--------h--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 578999999999999999999999 99999998775421 1 1234556677778888999988776532
Q ss_pred ---EEEeccc-ccccCEEEEccCC
Q 014990 98 ---SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 ---~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...++ ...+|.|++|+|.
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGT 239 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCC
Confidence 2333333 2479999999998
No 141
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.90 E-value=0.00035 Score=65.46 Aligned_cols=202 Identities=19% Similarity=0.179 Sum_probs=102.4
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCCC-----------CHHHHHHH
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAAC-----------TAKELREI 227 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~~-----------~~~~l~~~ 227 (415)
...|+|||+|++|+-+|..|++ .+ .+|.++.+........ ...+..+.
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~--------------------~G-~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~ 83 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK--------------------AG-LKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEI 83 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh--------------------CC-CeEEEEecCCCCCCccccCccccccccchHHHHHH
Confidence 4679999999999999999986 34 4789998875432111 11122222
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeE
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGV 307 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v 307 (415)
+..-++......... .... +..+...|..... +.|+++++++.+..+. .++++.+.++
T Consensus 84 l~~~gv~~~~~~~g~-------~~vd----~~~l~~~L~~~A~---------~~Gv~I~~~t~V~dl~--~~~~g~V~Gv 141 (257)
T PRK04176 84 LDEFGIRYKEVEDGL-------YVAD----SVEAAAKLAAAAI---------DAGAKIFNGVSVEDVI--LREDPRVAGV 141 (257)
T ss_pred HHHCCCCceeecCcc-------eecc----HHHHHHHHHHHHH---------HcCCEEEcCceeceee--EeCCCcEEEE
Confidence 222222111100000 0000 1122233333322 5689999998888876 3123367666
Q ss_pred EEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC----CCc-----ccCCCCccccCCCceeeccCCCCCc
Q 014990 308 HFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLP-----FDNHKGIVPNIRGRVLKNISGDSSQ 378 (415)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~----~~~-----~~~~~g~~~~~~G~i~v~~~~~~~t 378 (415)
........ ..|. ..+..++.++.||.|||....-.. ..+ .........+......+++ ..-
T Consensus 142 v~~~~~v~--~~g~-----~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~~~~~~~g~~~~~~~~~e~~v~~~---t~~ 211 (257)
T PRK04176 142 VINWTPVE--MAGL-----HVDPLTIEAKAVVDATGHDAEVVSVLARKGPELGIEVPGEKSMWAERGEKLVVEN---TGE 211 (257)
T ss_pred EEcccccc--ccCC-----CCCcEEEEcCEEEEEeCCCcHHHHHHHHHcCCcccccCCccccccCchHHHHHhc---CCe
Confidence 54321000 0010 113357999999999996652210 001 0000011111122333333 234
Q ss_pred ccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 379 VENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 379 ~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
-+||+|++|-.+. .| .-++..=...|+.||+.|..
T Consensus 212 ~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 212 VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHH
Confidence 6999999997652 12 12333335578888887754
No 142
>PRK07208 hypothetical protein; Provisional
Probab=97.89 E-value=1.5e-05 Score=81.61 Aligned_cols=42 Identities=33% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||||++||++|..|.+.| .+|+|+|+.+.+||...
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceee
Confidence 5678999999999999999999998 99999999999999753
No 143
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.88 E-value=6.6e-05 Score=73.72 Aligned_cols=28 Identities=39% Similarity=0.438 Sum_probs=25.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDII 50 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~li 50 (415)
||+|||||.||..||+.+++.| .+|.|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G--~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMG--AKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT----EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEE
Confidence 6999999999999999999999 999999
No 144
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.87 E-value=0.00011 Score=75.05 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLG--AEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 3578999999999999999999998 9999999887642 21 1234556667777788999988865521
Q ss_pred --------EEEecc----cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ ....+|.||+|+|. .|..
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~-~p~~ 274 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGR-RPNT 274 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCC-ccCC
Confidence 122222 23479999999998 4443
No 145
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=1.6e-05 Score=79.45 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=39.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
++|+|+|||.|||+||..|++.| ++|+|+|.++.+||.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCceeeee
Confidence 68999999999999999999999 9999999999999986544
No 146
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.86 E-value=0.00014 Score=62.75 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=29.2
Q ss_pred EEECCCHHHHHHHHHHHHcC---CCceEEEEcCCCC
Q 014990 23 CVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPT 55 (415)
Q Consensus 23 vIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~~~ 55 (415)
+|||||++|++++.+|.+.. +..+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999983 5689999999654
No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.85 E-value=0.00012 Score=73.98 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=64.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||++|+.+|..|++.+ .+|+++++.+.+.. +. ...+....+.+.++..+++++.+..+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRERG--KNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 4579999999999999999999998 89999998775411 11 1234556667777888999988766522
Q ss_pred E------EEecc-cccccCEEEEccCC
Q 014990 98 S------VSLSE-LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~------v~~~~-~~~~~d~lvlAtG~ 117 (415)
. +...+ ....+|.||+|+|.
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGI 231 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCc
Confidence 1 12222 23579999999998
No 148
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.85 E-value=0.00013 Score=74.52 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. |. ...++...+.+.++..+++++.++.+..
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLG--SEVTILQRSDRLL--------PR--EEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcCCcCC--------Cc--cCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 478999999999999999999999 9999999887542 21 1234455666777778899988875421
Q ss_pred -------EEEecc----cccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSE----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+.... ....+|.||+|+|. .|..
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~-~p~~ 268 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGR-RPNT 268 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECC-CcCC
Confidence 122211 23479999999998 4444
No 149
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.85 E-value=2e-05 Score=79.09 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.+..++|+|||||+||+++|..|++.| ++|+|||+.+.+
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 345789999999999999999999999 999999998653
No 150
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.85 E-value=2.2e-05 Score=76.12 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=42.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRS 62 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~ 62 (415)
-.++|+|+|||.+||++|++|++++|+..|+|+|.++++||+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 478999999999999999999999998999999999999998765
No 151
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.84 E-value=1.7e-05 Score=77.15 Aligned_cols=34 Identities=41% Similarity=0.648 Sum_probs=30.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||+||+++|..|++.| ++|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAG--IDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcc--cccccchhccc
Confidence 58999999999999999999999 99999999865
No 152
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.83 E-value=0.00014 Score=73.85 Aligned_cols=89 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+... . ...++...+.+.++..+++++.++.+..
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtli~~~~~~l~~-------~--~~~~~~~~l~~~l~~~gI~v~~~~~v~~ 216 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLG--KNVRIIQLEDRILPD-------S--FDKEITDVMEEELRENGVELHLNEFVKS 216 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CcEEEEeCCcccCch-------h--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 4579999999999999999999998 899999987653210 1 1235566677778888999988776532
Q ss_pred E--------EEecccccccCEEEEccCC
Q 014990 98 S--------VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~--------v~~~~~~~~~d~lvlAtG~ 117 (415)
- +..++....+|.||+|+|.
T Consensus 217 i~~~~~~~~v~~~~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 217 LIGEDKVEGVVTDKGEYEADVVIVATGV 244 (444)
T ss_pred EecCCcEEEEEeCCCEEEcCEEEECcCC
Confidence 1 2223334579999999997
No 153
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.83 E-value=2.2e-05 Score=79.17 Aligned_cols=41 Identities=39% Similarity=0.480 Sum_probs=33.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSG 63 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~ 63 (415)
||||||||+||++||..+++.| .+|+|||+.+.+||....+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~~ 41 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATSG 41 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGGS
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceEC
Confidence 6999999999999999999999 9999999999998875433
No 154
>PRK07233 hypothetical protein; Provisional
Probab=97.82 E-value=2e-05 Score=79.37 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=36.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+|+|||||.|||+||..|++.| .+|+|+|+.+.+||...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCcee
Confidence 5999999999999999999999 99999999999999754
No 155
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.82 E-value=3.2e-05 Score=79.27 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=40.9
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCCCccc
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~gg~~~ 61 (415)
....+++|+|||||.|||+||.+|.+.+ ++.+|+|+|+.+.+||.+.
T Consensus 18 ~~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 18 EGVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 3445789999999999999999999975 4589999999999998764
No 156
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.82 E-value=2.1e-05 Score=80.15 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=37.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC--CceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~lie~~~~~gg~~~ 61 (415)
+++|+|||||.|||+||..|.+.+| +.+|+|+|+.+.+||...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 4689999999999999999999922 399999999999998754
No 157
>PLN02268 probable polyamine oxidase
Probab=97.82 E-value=2.3e-05 Score=79.30 Aligned_cols=40 Identities=28% Similarity=0.300 Sum_probs=37.2
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.|||+||..|.+.| .+|+|+|+.+++||...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceee
Confidence 47999999999999999999998 99999999999999764
No 158
>PLN02576 protoporphyrinogen oxidase
Probab=97.81 E-value=2.4e-05 Score=80.56 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||++||+||.+|.+. | .+|+|+|+++.+||...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNIT 53 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCcee
Confidence 3567899999999999999999999 8 99999999999998754
No 159
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00018 Score=73.71 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLG--AEVTILEALPAFL--------AA--ADEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCccC--------Cc--CCHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 4579999999999999999999998 9999999887542 21 1234455666667777899888765421
Q ss_pred --------EEEecc-----cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE-----LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~-----~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ ....+|.|++|+|. .|..
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~-~p~~ 286 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGR-VPNT 286 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCC-ccCC
Confidence 122222 13479999999998 4443
No 160
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.80 E-value=0.00017 Score=73.32 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=64.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..+++.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.+..+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLG--VQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 4578999999999999999999998 9999999876531 21 1234555666777778999988865422
Q ss_pred --------EEEeccc-ccccCEEEEccCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
.+...+. ...+|.||+|+|.
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGR 261 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCC
Confidence 1222222 3579999999998
No 161
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.80 E-value=1.9e-05 Score=76.27 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=40.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCCccccCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVRSGV 64 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg~~~~~~ 64 (415)
...+|||||||||||+||++|.+.. .+.+|+++|+...+||....|.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 4678999999999999999997554 4689999999999999877663
No 162
>PRK06370 mercuric reductase; Validated
Probab=97.80 E-value=0.00017 Score=73.61 Aligned_cols=92 Identities=20% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFG--SEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4579999999999999999999999 9999999887642 11 1234556667777788999988765521
Q ss_pred --------EEEec--c--cccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS--E--LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~--~--~~~~~d~lvlAtG~~~~~~ 122 (415)
.+... + ....+|.||+|+|. .|..
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~-~pn~ 273 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGR-VPNT 273 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCC-CcCC
Confidence 12211 1 13479999999998 4443
No 163
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.80 E-value=0.00011 Score=73.33 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.+++||||+|++|+.+|..|+++| .+|+++|+.+.+++.+.. .+....+.+.++..+++++.+..+..
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G--~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRG--KKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 689999999999999999999999 999999999988766542 35566777888888888877766411
Q ss_pred E----------EEeccc-ccccCEEEEccCCC
Q 014990 98 S----------VSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 98 ~----------v~~~~~-~~~~d~lvlAtG~~ 118 (415)
. +..... ...+|.+++++|..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~ 236 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGER 236 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccc
Confidence 1 122222 24799999999983
No 164
>PRK14694 putative mercuric reductase; Provisional
Probab=97.80 E-value=0.00018 Score=73.55 Aligned_cols=90 Identities=13% Similarity=0.162 Sum_probs=65.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+++++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g--~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLG--SRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 579999999999999999999999 999999864321 11 1234556677778888999988865522
Q ss_pred -------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+....+|.||+|+|. .|..
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 275 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGR-TPNT 275 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCC-CCCc
Confidence 12222334579999999998 4443
No 165
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.77 E-value=3.1e-05 Score=78.48 Aligned_cols=37 Identities=41% Similarity=0.555 Sum_probs=34.0
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....++|+||||||||+++|..|++.| ++|+|+|+..
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 346789999999999999999999999 9999999875
No 166
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.77 E-value=3.1e-05 Score=79.61 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=37.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.+||+||..|++.| ++|+|+|+++.+||...
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~ 41 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAG 41 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccc
Confidence 68999999999999999999999 99999999999998653
No 167
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.77 E-value=0.00018 Score=73.29 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=66.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALG--VKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 4689999999999999999999999 9999999887542 21 1234556667777777899888765522
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~~ 274 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGR-TGNT 274 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecC-Cccc
Confidence 1222222 2479999999998 4443
No 168
>PRK07045 putative monooxygenase; Reviewed
Probab=97.76 E-value=3.2e-05 Score=77.00 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=34.6
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+||||||||+++|..|++.| ++|+|+|+.+.+
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 35679999999999999999999999 999999998754
No 169
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.75 E-value=0.00024 Score=71.98 Aligned_cols=92 Identities=13% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++.+.+. |.. ..++...+.+.+++.+++++.++.+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFG--SKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 4569999999999999999999999 9999999876431 221 234556677778888999988775522
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+..++....+|.|++|+|. .|..
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~-~pn~ 256 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGR-QPAT 256 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecC-CcCC
Confidence 12222334579999999998 4443
No 170
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.75 E-value=0.00021 Score=72.58 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g--~~Vtli~~~~~il--------~~--~d~~~~~~~~~~l~~~gI~i~~~~~v~~ 232 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLG--SETHLVIRHERVL--------RS--FDSMISETITEEYEKEGINVHKLSKPVK 232 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCC--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 3579999999999999999999999 9999999887642 11 1234556677777788999988765422
Q ss_pred ---------EEEeccc--ccccCEEEEccCCCCCCC
Q 014990 98 ---------SVSLSEL--RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ---------~v~~~~~--~~~~d~lvlAtG~~~~~~ 122 (415)
.+..++. ...+|.|++|+|. .|..
T Consensus 233 i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~-~pn~ 267 (450)
T TIGR01421 233 VEKTVEGKLVIHFEDGKSIDDVDELIWAIGR-KPNT 267 (450)
T ss_pred EEEeCCceEEEEECCCcEEEEcCEEEEeeCC-CcCc
Confidence 1222233 2478999999998 4443
No 171
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.74 E-value=0.0002 Score=71.02 Aligned_cols=36 Identities=39% Similarity=0.611 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
||+||||||||+++|..|.+..++.+|+|||+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 699999999999999999444444999999988654
No 172
>PRK06116 glutathione reductase; Validated
Probab=97.74 E-value=0.00025 Score=72.10 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+++++.+.+. +. ...++...+.+.+++.+++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g--~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLG--SETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 4579999999999999999999999 9999999877532 11 1234556677778888999988876522
Q ss_pred ---------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 ---------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ---------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~-~p~~ 267 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGR-EPNT 267 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCC-CcCC
Confidence 1222222 2479999999998 4443
No 173
>PRK08013 oxidoreductase; Provisional
Probab=97.73 E-value=3.9e-05 Score=76.74 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+.++|+||||||+|+++|..|++.| ++|+|||+.+.+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~~ 38 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVPE 38 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCCc
Confidence 3579999999999999999999999 999999998753
No 174
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.72 E-value=4.6e-05 Score=69.84 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=35.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..|+|||+|+||++||..|+..| .+|++|||+.-.||.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccch
Confidence 46999999999999999999999 9999999998777654
No 175
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.72 E-value=0.00026 Score=72.25 Aligned_cols=92 Identities=18% Similarity=0.246 Sum_probs=66.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. |.. ..++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G--~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYG--VDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 3579999999999999999999999 9999999776532 221 234556667777788999998876521
Q ss_pred --------EEEec--cc---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+... ++ ...+|.||+|+|. .|..
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~-~pn~ 275 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGF-APRV 275 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCc-ccCC
Confidence 12221 22 3479999999998 4443
No 176
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.72 E-value=4.1e-05 Score=78.08 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=36.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||.+||+||..|.+.+ ++.+|+|+|+.+++||...
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 57999999999999999999863 2379999999999999754
No 177
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.72 E-value=3.9e-05 Score=76.31 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 478999999999999999999999 9999999874
No 178
>PRK06753 hypothetical protein; Provisional
Probab=97.72 E-value=3.7e-05 Score=75.96 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQG--HEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 47999999999999999999999 999999998754
No 179
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.70 E-value=4.5e-05 Score=75.83 Aligned_cols=38 Identities=29% Similarity=0.454 Sum_probs=34.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+|||||++|+++|..|++.| .+|+|||+.+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 45679999999999999999999999 999999998653
No 180
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.69 E-value=3.8e-05 Score=79.17 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=35.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
|||||||.+||+||.+|++.| .+|+|+|+++.+||...
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceE
Confidence 689999999999999999999 99999999999999754
No 181
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.68 E-value=0.00037 Score=71.21 Aligned_cols=88 Identities=18% Similarity=0.243 Sum_probs=64.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..+.+.+ .+|+|+|+.+.+. |.. ..+....+.+.++..+++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G--~~Vtlie~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLG--AQVTVVEYLDRIC--------PGT--DTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCCCCC--------CCC--CHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 4689999999999999999999999 9999999877542 221 124455667777778999988865421
Q ss_pred --------EEEec---c---cccccCEEEEccCC
Q 014990 98 --------SVSLS---E---LRQLYHVVVLAYGA 117 (415)
Q Consensus 98 --------~v~~~---~---~~~~~d~lvlAtG~ 117 (415)
.+... + ....+|.|++|+|.
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~ 274 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGR 274 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCC
Confidence 11111 1 12478999999998
No 182
>PRK07236 hypothetical protein; Provisional
Probab=97.68 E-value=4.9e-05 Score=75.63 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAG--WDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCC
Confidence 35689999999999999999999999 99999999863
No 183
>PRK14727 putative mercuric reductase; Provisional
Probab=97.67 E-value=0.00034 Score=71.67 Aligned_cols=91 Identities=13% Similarity=0.143 Sum_probs=65.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|.+.+ .+|+|+++...+ +. ...++...+.+.+++.+++++.++.+..
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~ 253 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLG--SRVTILARSTLL---------FR--EDPLLGETLTACFEKEGIEVLNNTQASL 253 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEEcCCCC---------Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEE
Confidence 3578999999999999999999999 999999864211 11 1234556677778888999988766522
Q ss_pred --------EEEecccccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+....+|.||+|+|. .|..
T Consensus 254 i~~~~~~~~v~~~~g~i~aD~VlvA~G~-~pn~ 285 (479)
T PRK14727 254 VEHDDNGFVLTTGHGELRAEKLLISTGR-HANT 285 (479)
T ss_pred EEEeCCEEEEEEcCCeEEeCEEEEccCC-CCCc
Confidence 12222334578999999998 4443
No 184
>PRK13748 putative mercuric reductase; Provisional
Probab=97.67 E-value=0.00032 Score=73.37 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=65.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++...+ +. ...++...+.+.++..+++++.++.+..
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g--~~Vtli~~~~~l---------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~ 335 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLG--SKVTILARSTLF---------FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEecCccc---------cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEE
Confidence 3579999999999999999999999 999999974311 21 1234556777778888999988776522
Q ss_pred E--------EEecccccccCEEEEccCCCCCCC
Q 014990 98 S--------VSLSELRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ~--------v~~~~~~~~~d~lvlAtG~~~~~~ 122 (415)
- +..++....+|.|++|+|. .|..
T Consensus 336 i~~~~~~~~v~~~~~~i~~D~vi~a~G~-~pn~ 367 (561)
T PRK13748 336 VAHVDGEFVLTTGHGELRADKLLVATGR-APNT 367 (561)
T ss_pred EEecCCEEEEEecCCeEEeCEEEEccCC-CcCC
Confidence 1 2222334579999999998 4443
No 185
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.67 E-value=4.8e-05 Score=75.70 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=33.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G--~~V~liE~~~ 38 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHG--FSVAVLEHAA 38 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 45689999999999999999999999 9999999875
No 186
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.67 E-value=5.4e-05 Score=75.21 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|+|||||+||+++|..|++.| .+|+|+|+.+.+
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 3578999999999999999999999 999999998664
No 187
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.66 E-value=5.2e-05 Score=77.12 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=35.9
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+|+|||||+||++||..|.+.| .+|+|+|+.+.+||..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCc
Confidence 5899999999999999999999 9999999999999865
No 188
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.65 E-value=6.4e-05 Score=74.10 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=36.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||||+||+++|..|++.| .+|+|+|+.+..||...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCcee
Confidence 58999999999999999999988 99999999998888543
No 189
>PLN02507 glutathione reductase
Probab=97.65 E-value=0.00038 Score=71.68 Aligned_cols=91 Identities=20% Similarity=0.161 Sum_probs=66.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++...+.+.+++.+++++.++.+..-
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMG--ATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcC--CeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 578999999999999999999999 9999999876532 11 12345566667777889999888755221
Q ss_pred --------EEeccc-ccccCEEEEccCCCCCCC
Q 014990 99 --------VSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 99 --------v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
+...++ ...+|.|++|+|. .|..
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 302 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGR-APNT 302 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecC-CCCC
Confidence 222222 3579999999998 4443
No 190
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.64 E-value=5.8e-05 Score=75.20 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+|||||++|+++|..|++.| .+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 35679999999999999999999999 99999999864
No 191
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=0.00044 Score=70.27 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=62.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. ...++.+.+.++++ .+++++.+..+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~~-~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALG--VRVTVVNRSGRLL--------RH--LDDDISERFTELAS-KRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCccc--------cc--cCHHHHHHHHHHHh-cCeEEEeCCEEEE
Confidence 3579999999999999999999998 9999999887542 11 11234444444443 4688887765521
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 264 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGR-VPNG 264 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECC-ccCc
Confidence 1222222 3479999999998 4444
No 192
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.63 E-value=5.5e-05 Score=75.31 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~ 53 (415)
..++|+||||||||+++|..|++. | ++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 467899999999999999999998 8 999999995
No 193
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.63 E-value=6.8e-05 Score=74.76 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=33.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+++|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~ 39 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEI 39 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCccc
Confidence 578999999999999999999999 999999998654
No 194
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.63 E-value=5.7e-05 Score=74.81 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=32.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+|||||+||+++|..|++.| ++|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5999999999999999999999 999999999764
No 195
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.63 E-value=0.00044 Score=70.61 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=65.6
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
.++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. +.. ..+....+.+.++..+++++.+..+..
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g--~~Vtli~~~~~~l--------~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELG--VKVTLVSSRDRVL--------PGE--DADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CeEEEEEcCCcCC--------CCC--CHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 468999999999999999999999 9999999876532 221 224455667777888999988765421
Q ss_pred -------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 -------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~-~pn~ 276 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGS-VPNT 276 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecC-CcCC
Confidence 1222222 2479999999998 4443
No 196
>PRK09126 hypothetical protein; Provisional
Probab=97.62 E-value=6.1e-05 Score=74.95 Aligned_cols=35 Identities=34% Similarity=0.542 Sum_probs=32.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 578999999999999999999999 99999999865
No 197
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.00046 Score=69.62 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=64.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcC------------CCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCe
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAH------------QEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERC 87 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g------------~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (415)
++|+|||||+.|+.+|..|+... ++.+|+||++.+.+. +. ..........+.+++.++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~--~~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GS--FDQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------cc--CCHHHHHHHHHHHHHCCC
Confidence 58999999999999999987520 238999999877542 21 123456677778888899
Q ss_pred EEEeceEece----EEEecccc-cccCEEEEccCC
Q 014990 88 SFFGNVTLGS----SVSLSELR-QLYHVVVLAYGA 117 (415)
Q Consensus 88 ~~~~~~~v~~----~v~~~~~~-~~~d~lvlAtG~ 117 (415)
+++.+..+.. .+..+++. ..+|.+|+|+|.
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGV 278 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCC
Confidence 9998876632 34444443 479999999997
No 198
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.61 E-value=6.3e-05 Score=74.90 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.++|+||||||+|+++|..|++.| ++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 578999999999999999999999 999999997
No 199
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.60 E-value=6.7e-05 Score=74.78 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 368999999999999999999999 99999999874
No 200
>PRK07538 hypothetical protein; Provisional
Probab=97.59 E-value=7.3e-05 Score=75.10 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=32.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||+||+++|..|++.| ++|+|||+.+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 58999999999999999999999 999999998653
No 201
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.59 E-value=6.9e-05 Score=75.02 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 368999999999999999999999 9999999876
No 202
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.58 E-value=8e-05 Score=76.63 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=37.4
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++|+|||+|.+|+++|..|++.| .+|+|+|+++.+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCcee
Confidence 47999999999999999999999 99999999999998754
No 203
>PLN02529 lysine-specific histone demethylase 1
Probab=97.58 E-value=9.1e-05 Score=78.77 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+.++|+|||||+||++||..|++.| ++|+|+|+.+.+||...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~ 200 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVY 200 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCcee
Confidence 346789999999999999999999999 99999999998888643
No 204
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.58 E-value=0.00039 Score=75.70 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=66.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++++|||||+.|+.+|..|++.+ .+|+|+++.+.+. + .....+....+.+.++..+++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~~G--~~VtvVe~~~~ll--------~-~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKNLG--VETHVIEFAPMLM--------A-EQLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CeEEEEeccccch--------h-hhcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 4578999999999999999999999 9999999876431 1 112234456677778888999988875522
Q ss_pred E----------EEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 S----------VSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 ~----------v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
- +...++ ...+|.||+|+|. .|..
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~-rPn~ 247 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGI-RPQD 247 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCc-ccCc
Confidence 1 222233 2479999999998 4443
No 205
>PRK07588 hypothetical protein; Provisional
Probab=97.57 E-value=8e-05 Score=74.19 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYG--HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CceEEEeCCCC
Confidence 47999999999999999999999 99999999865
No 206
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.57 E-value=0.00041 Score=75.30 Aligned_cols=93 Identities=14% Similarity=0.172 Sum_probs=65.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++.+.+. +. .........+.+.++..+++++.+..+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~~G--~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQNLG--MDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 4578999999999999999999999 9999999776431 11 01123345566677788999988865421
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.||+|+|. .|..
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~-~Pn~ 240 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGI-RPND 240 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCC-CcCc
Confidence 1333333 3479999999998 4443
No 207
>PRK05868 hypothetical protein; Validated
Probab=97.57 E-value=8.9e-05 Score=73.44 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=33.0
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+++|+|||||++|+++|..|++.| ++|+|||+.+.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G--~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHG--YSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCC--CCEEEEcCCCCC
Confidence 368999999999999999999999 999999998654
No 208
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.56 E-value=8.8e-05 Score=74.30 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+||||||+|+++|..|++.| ++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G--~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESD--LRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCC--CEEEEEcCC
Confidence 3578999999999999999999999 999999986
No 209
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.54 E-value=0.00074 Score=70.01 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=30.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||||+||+.+|..+++.+ .+|+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G--~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMG--AKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CCEEEEeccc
Confidence 58999999999999999999999 9999999863
No 210
>PLN02568 polyamine oxidase
Probab=97.54 E-value=0.00013 Score=75.48 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=38.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---CCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~~~~gg~~~ 61 (415)
++.++|+|||||.|||+||.+|.+.| +..+|+|+|+.+.+||.+.
T Consensus 3 ~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 3 AKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEE
Confidence 35678999999999999999999875 2379999999999998753
No 211
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.53 E-value=0.00038 Score=71.37 Aligned_cols=79 Identities=23% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
+.++|+|||+|++|+++|..|+++| .+|+++|+.+. +....+.+.++..+++++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G--~~V~~~d~~~~-----------------~~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELG--ARVTVVDDGDD-----------------ERHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCch-----------------hhhHHHHHHHHHcCCEEEECCCcc-
Confidence 4678999999999999999999999 99999997642 112233344566688887665432
Q ss_pred EEEecccccccCEEEEccCCCCCCCC
Q 014990 98 SVSLSELRQLYHVVVLAYGAESDRAL 123 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~~~~~~~ 123 (415)
....+|.||+++|. .|..|
T Consensus 75 ------~~~~~D~Vv~s~Gi-~~~~~ 93 (480)
T PRK01438 75 ------LPEDTDLVVTSPGW-RPDAP 93 (480)
T ss_pred ------ccCCCCEEEECCCc-CCCCH
Confidence 22468999999998 55554
No 212
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.53 E-value=0.00013 Score=72.01 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=38.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....+|||||||.||++||.+|...+ ..+++|+|..++.||-..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 45679999999999999999999777 468999999999998643
No 213
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.53 E-value=0.00068 Score=69.10 Aligned_cols=91 Identities=18% Similarity=0.174 Sum_probs=64.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+.. . ...++...+.+.+++. ++++.+..+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g--~~Vtli~~~~~~l~--------~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLG--VKVTVFERGDRILP--------L--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCcCc--------c--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 4579999999999999999999999 99999998876432 1 1234555666667776 88877765421
Q ss_pred -------EEEe----cc-cccccCEEEEccCCCCCCC
Q 014990 98 -------SVSL----SE-LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 -------~v~~----~~-~~~~~d~lvlAtG~~~~~~ 122 (415)
.+.. .+ ....+|.|++|+|. .|..
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~p~~ 270 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGR-RPNT 270 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCC-ccCC
Confidence 1221 11 12479999999998 4444
No 214
>PRK06185 hypothetical protein; Provisional
Probab=97.53 E-value=9.9e-05 Score=73.88 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||++|+++|..|++.| ++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G--~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAG--VDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 5689999999999999999999998 99999999754
No 215
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.51 E-value=0.0001 Score=73.50 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 468999999999999999999999 99999999874
No 216
>PRK06126 hypothetical protein; Provisional
Probab=97.51 E-value=0.00012 Score=76.28 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G--~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRG--VDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 35678999999999999999999999 9999999885
No 217
>PLN02676 polyamine oxidase
Probab=97.51 E-value=0.00013 Score=74.80 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~gg~~~ 61 (415)
+..++|+|||||++||+||.+|++.| . +|+|+|+.+.+||.+.
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~ 67 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMR 67 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCcce
Confidence 46789999999999999999999998 7 6999999999998754
No 218
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.50 E-value=0.00064 Score=69.71 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=63.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
...+++|||||+.|+.+|..|++.+ .+|+|+++. .+ + +.+ ..++...+.+.++..+++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~~--d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAGIG--LDVTVMVRS-IL---L-----RGF--DQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhC--CcEEEEEec-cc---c-----ccc--CHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 3468999999999999999999999 999999863 21 1 221 234556667777888999988764311
Q ss_pred --------EEEeccc----ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL----RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~----~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+. ...+|.|++|+|. .|..
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~-~pn~ 281 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGR-DACT 281 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecC-CcCC
Confidence 1222222 3579999999997 4443
No 219
>PTZ00058 glutathione reductase; Provisional
Probab=97.50 E-value=0.00074 Score=70.25 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
.++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +.+ ..++.+.+.+.+++.+++++.+..+..-
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G--~~Vtli~~~~~il--------~~~--d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLG--AESYIFARGNRLL--------RKF--DETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC--CcEEEEEeccccc--------ccC--CHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 689999999999999999999999 9999999877532 221 2345566677777889998887755211
Q ss_pred ---------EEecc-c-ccccCEEEEccCC
Q 014990 99 ---------VSLSE-L-RQLYHVVVLAYGA 117 (415)
Q Consensus 99 ---------v~~~~-~-~~~~d~lvlAtG~ 117 (415)
+...+ . ...+|.|++|+|.
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGR 334 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCC
Confidence 11111 1 2478999999997
No 220
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.49 E-value=0.00011 Score=72.77 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=31.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+|+|||||++|+++|..|++.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 58999999999999999999999 9999999864
No 221
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.49 E-value=0.00012 Score=73.13 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+|+|||||+||+++|..|++.| ++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCc
Confidence 68999999999999999999999 99999999865
No 222
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.49 E-value=0.00083 Score=68.87 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=63.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA---HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~---g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
..++|+|||||+.|+.+|..+... + .+|+|+++.+.+. +. ...++...+.+.++..+++++.++.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G--~~Vtli~~~~~il--------~~--~d~~~~~~l~~~L~~~GI~i~~~~~ 253 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRG--GKVTLCYRNNMIL--------RG--FDSTLRKELTKQLRANGINIMTNEN 253 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCC--CeEEEEecCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEcCCE
Confidence 457899999999999999877654 6 8999999887642 22 1235566777778888999988875
Q ss_pred ece---------EEEeccc-ccccCEEEEccCC
Q 014990 95 LGS---------SVSLSEL-RQLYHVVVLAYGA 117 (415)
Q Consensus 95 v~~---------~v~~~~~-~~~~d~lvlAtG~ 117 (415)
+.. .+...+. ...+|.|++|+|.
T Consensus 254 v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 254 PAKVTLNADGSKHVTFESGKTLDVDVVMMAIGR 286 (486)
T ss_pred EEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCC
Confidence 422 1222222 3479999999997
No 223
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.49 E-value=0.00017 Score=70.21 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+|+|||||.+|+++|.+|++.| .+|+|+|+....+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeeccccc
Confidence 6999999999999999999999 9999999994433
No 224
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.48 E-value=0.00083 Score=68.68 Aligned_cols=91 Identities=19% Similarity=0.357 Sum_probs=62.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.++.. +.++.+..+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G--~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLG--SEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 3579999999999999999999999 9999999887542 22 1234455556666655 77777655421
Q ss_pred --------EEEecc--c---ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSE--L---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~--~---~~~~d~lvlAtG~~~~~~ 122 (415)
.+...+ . ...+|.||+|+|. .|..
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~-~pn~ 276 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGR-VPNG 276 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeecc-cccC
Confidence 122211 1 2479999999998 4443
No 225
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.47 E-value=0.00086 Score=69.08 Aligned_cols=91 Identities=19% Similarity=0.217 Sum_probs=63.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|++.+ .+|+|+++. .+ + +. ...++...+.+.++..+++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G--~~Vtli~~~-~~---l-----~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELG--FDVTVAVRS-IP---L-----RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CcEEEEEcC-cc---c-----cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 3468999999999999999999999 999999853 21 1 11 1234556677778888999888764321
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~-~pn~ 280 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGR-KPDI 280 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCC-CCCc
Confidence 1222222 2479999999998 4443
No 226
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.46 E-value=0.00017 Score=77.24 Aligned_cols=43 Identities=33% Similarity=0.485 Sum_probs=39.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||+||+++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~ 278 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVK 278 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccc
Confidence 35788999999999999999999999 99999999999988643
No 227
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.45 E-value=0.00093 Score=67.95 Aligned_cols=91 Identities=14% Similarity=0.190 Sum_probs=61.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|++|++.+.+. +. ...++...+.+..+ .+++++.+..+..
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G--~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~ 234 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALG--TRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTA 234 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEE
Confidence 3578999999999999999999999 9999999877542 11 11233444444444 4688877665421
Q ss_pred --------EEEeccc-ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSEL-RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~-~~~~d~lvlAtG~~~~~~ 122 (415)
.+...++ ...+|.|++|+|. .|..
T Consensus 235 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~-~pn~ 267 (452)
T TIGR03452 235 VEQDGDGVTLTLDDGSTVTADVLLVATGR-VPNG 267 (452)
T ss_pred EEEcCCeEEEEEcCCCEEEcCEEEEeecc-CcCC
Confidence 1222222 3479999999998 4443
No 228
>PLN02487 zeta-carotene desaturase
Probab=97.44 E-value=0.00019 Score=74.61 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=38.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.+++|+|||||++|+++|..|.+.| ++|+|+|+.+.+||.+.
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 3469999999999999999999999 99999999999988653
No 229
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.44 E-value=0.00012 Score=69.39 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..++|+|||+|.+||+||+.|.++ ++|||||...+.||...
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 578899999999999999999998 79999999999988653
No 230
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.43 E-value=0.00014 Score=73.61 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHH----cCCCceEEEEcCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLK----AHQEAQVDIIDRL 53 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~----~g~~~~v~lie~~ 53 (415)
++|+||||||+|+++|..|++ .| ++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G--~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKD--LKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCC--CeEEEEeCC
Confidence 579999999999999999998 67 999999994
No 231
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.43 E-value=0.00015 Score=72.83 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=32.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
||||||+|.||++||..+++.| .+|+|+|+.+..|+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeecccccc
Confidence 6999999999999999999999 999999999876653
No 232
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00021 Score=70.39 Aligned_cols=42 Identities=31% Similarity=0.311 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+...+|+|||+|.+||++|..|.+.| ++|+|+|.++++||-.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCcee
Confidence 57889999999999999999999999 9999999999988854
No 233
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.43 E-value=0.00019 Score=71.92 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=32.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||..|+++|.+|++.| .+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 58999999999999999999998 999999998753
No 234
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.42 E-value=0.00021 Score=71.55 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=35.1
Q ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHc-CCCc-eEEEEcCCCC
Q 014990 13 TALSSNPLRVCVVGSGPAGFYTAEKTLKA-HQEA-QVDIIDRLPT 55 (415)
Q Consensus 13 ~~~~~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~-~v~lie~~~~ 55 (415)
.++....++|+|||||..|+++|++|++. | . +|+|+|+...
T Consensus 24 ~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g--~~~V~vle~~~~ 66 (407)
T TIGR01373 24 SPEPKPTYDVIIVGGGGHGLATAYYLAKEHG--ITNVAVLEKGWL 66 (407)
T ss_pred CCCCCccCCEEEECCcHHHHHHHHHHHHhcC--CCeEEEEEcccc
Confidence 44455788999999999999999999996 6 5 8999999753
No 235
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.42 E-value=0.00019 Score=74.90 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=34.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G--~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQG--VPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 35679999999999999999999999 99999999864
No 236
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.42 E-value=0.00018 Score=72.30 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=32.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
++|+|||||+||+++|..|++.| ..+|+|+|+.+.+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g-~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHS-HLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcC-CCCEEEEecCCcCC
Confidence 47999999999999999999986 14999999987643
No 237
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.41 E-value=0.0012 Score=61.64 Aligned_cols=201 Identities=17% Similarity=0.200 Sum_probs=100.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCC-------C----CHHHHHHH
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA-------C----TAKELREI 227 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~-------~----~~~~l~~~ 227 (415)
.-.|+|||+|++|+-+|..|++ .+ .+|.++.|+...... | ......+.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~--------------------~G-~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~ 79 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK--------------------NG-LKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEI 79 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCCCCccccCCCcceecccccchHHHH
Confidence 4579999999999999999986 34 589999887543211 1 01111222
Q ss_pred HcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC--Cee
Q 014990 228 LGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG--HVS 305 (415)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~--~v~ 305 (415)
+...++......... .... +..+...|..... +.|++++++..+.++. . +++ .+.
T Consensus 80 l~~~gi~~~~~~~g~--------~~~~---~~el~~~L~~~a~---------e~GV~I~~~t~V~dli--~-~~~~~~V~ 136 (254)
T TIGR00292 80 LDEFGIRYEDEGDGY--------VVAD---SAEFISTLASKAL---------QAGAKIFNGTSVEDLI--T-RDDTVGVA 136 (254)
T ss_pred HHHCCCCeeeccCce--------EEee---HHHHHHHHHHHHH---------HcCCEEECCcEEEEEE--E-eCCCCceE
Confidence 222222111110000 0000 0112222322222 5679999998888876 3 233 466
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccC----CCCcccCC----CCc---cccCCCceeeccCC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPV----NGLPFDNH----KGI---VPNIRGRVLKNISG 374 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~----~~~~~~~~----~g~---~~~~~G~i~v~~~~ 374 (415)
++......... .|. ..+..++.+++||.|||...... ..+++... .|. -.+..-...+++
T Consensus 137 GVv~~~~~v~~--~g~-----~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~-- 207 (254)
T TIGR00292 137 GVVINWSAIEL--AGL-----HVDPLTQRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHEN-- 207 (254)
T ss_pred EEEeCCccccc--cCC-----CCCCEEEEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhc--
Confidence 76553210000 010 11235899999999999765220 00011000 000 001001112222
Q ss_pred CCCcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 375 DSSQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 375 ~~~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
..--+||+|++|-.+. .| .-++..=+..|+.||+.|.+
T Consensus 208 -t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 208 -TREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred -cCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 2345899999996652 12 12343345688888887764
No 238
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.41 E-value=0.0002 Score=74.56 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|+||||||+|+++|..|++.| ++|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G--~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYG--VRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 46789999999999999999999999 99999999864
No 239
>PLN02546 glutathione reductase
Probab=97.41 E-value=0.0011 Score=68.88 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=64.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+|+++.+.+. +. ...++...+.+.++..+++++.+..+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g--~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLK--SDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcC--CeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 4679999999999999999999998 9999999876532 21 1234555666777788999988765422
Q ss_pred E---------EEeccccc-ccCEEEEccCCC
Q 014990 98 S---------VSLSELRQ-LYHVVVLAYGAE 118 (415)
Q Consensus 98 ~---------v~~~~~~~-~~d~lvlAtG~~ 118 (415)
. +...+... .+|.|++|+|..
T Consensus 319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 319 IIKSADGSLSLKTNKGTVEGFSHVMFATGRK 349 (558)
T ss_pred EEEcCCCEEEEEECCeEEEecCEEEEeeccc
Confidence 1 11122222 489999999983
No 240
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.40 E-value=0.00023 Score=72.71 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=33.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+...+|||||+|.||++||..+++.| .+|+|+||.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~G--~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREAG--ASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 35679999999999999999999999 99999999863
No 241
>PLN02612 phytoene desaturase
Probab=97.40 E-value=0.00024 Score=74.25 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=39.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....++|+|||||.+|+++|.+|.+.| .+|+|+|+.+.+||...
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcce
Confidence 345788999999999999999999999 99999999998888653
No 242
>PLN02985 squalene monooxygenase
Probab=97.39 E-value=0.00021 Score=73.66 Aligned_cols=39 Identities=26% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+...++|+|||||++|+++|..|++.| .+|+|+|+...
T Consensus 39 ~~~~~~DViIVGAG~aGlalA~aLa~~G--~~V~vlEr~~~ 77 (514)
T PLN02985 39 RKDGATDVIIVGAGVGGSALAYALAKDG--RRVHVIERDLR 77 (514)
T ss_pred CcCCCceEEEECCCHHHHHHHHHHHHcC--CeEEEEECcCC
Confidence 3456889999999999999999999999 99999999753
No 243
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.39 E-value=0.00021 Score=73.71 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||++||..+++.| .+|+|+||.+..||
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG 98 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGG 98 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCC
Confidence 4679999999999999999999999 99999999987665
No 244
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.39 E-value=0.00018 Score=73.54 Aligned_cols=39 Identities=36% Similarity=0.431 Sum_probs=36.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
+|+|||||.+|+++|..|.+.| ++|+|+|+.+.+||...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence 5899999999999999999999 99999999999998654
No 245
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.37 E-value=0.00034 Score=70.61 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|+.|+.+|..|.+ .+ ..|+++.|.+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~--------------------~G-~~Vtv~e~~~~ 157 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSR--------------------AG-HDVTVFERVAL 157 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHh--------------------CC-CeEEEeCCcCC
Confidence 67999999999999999999996 33 58999888753
No 246
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.36 E-value=0.00023 Score=70.41 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=32.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
++|+|||||.+|+++|++|+++| .+|+|+|+.+..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g--~~V~l~e~~~~~ 35 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHG--KKTLLLEQFDLP 35 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCC
Confidence 47999999999999999999999 999999997643
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.36 E-value=0.00022 Score=70.76 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||++|+.+|..|++.| ++|+|||+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~G--l~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRG--VPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEEccCcc
Confidence 468999999999999999999999 999999987643
No 248
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.36 E-value=0.00025 Score=70.04 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=33.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||.+|+++|.+|++.| .+|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g--~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRG--LRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEecccCC
Confidence 578999999999999999999999 999999998654
No 249
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.36 E-value=0.00021 Score=75.10 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=33.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.+..+|+|||||+||+++|..|++.| ++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~G--i~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKG--FDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcC--CeEEEEeccc
Confidence 35689999999999999999999999 9999999864
No 250
>PTZ00367 squalene epoxidase; Provisional
Probab=97.36 E-value=0.00022 Score=74.16 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=33.8
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++..++|+|||||++|+++|..|++.| .+|+|+|+..
T Consensus 30 ~~~~~dViIVGaGiaGlalA~aLar~G--~~V~VlEr~~ 66 (567)
T PTZ00367 30 TNYDYDVIIVGGSIAGPVLAKALSKQG--RKVLMLERDL 66 (567)
T ss_pred cccCccEEEECCCHHHHHHHHHHHhcC--CEEEEEcccc
Confidence 346789999999999999999999999 9999999875
No 251
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.35 E-value=0.00022 Score=75.48 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=33.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHc-CCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKA-HQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~-g~~~~v~lie~~~~ 55 (415)
+..++|+||||||+||++|..|++. | ++|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~G--i~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPD--ITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCC--CcEEEEEcCCC
Confidence 4578999999999999999999995 8 99999998853
No 252
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.35 E-value=0.00024 Score=70.83 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=33.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
++|+|||||.+|+++|++|+++.|+.+|+|+|+.+.++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~ 40 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPA 40 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccc
Confidence 68999999999999999999993339999999986543
No 253
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.33 E-value=0.0017 Score=64.30 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=71.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece-
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS- 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~- 97 (415)
..+|+++|+|+.|+.+|..|.... .+||+|++++.+. |. .....+...+..++++.++++++++.+..
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~--~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l 281 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKA--KSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSSL 281 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcC--ceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceeec
Confidence 678999999999999999999998 9999999887542 21 12234566777888888999999887632
Q ss_pred ---------EEEecccc-cccCEEEEccCCCCCCCCCCC
Q 014990 98 ---------SVSLSELR-QLYHVVVLAYGAESDRALGIP 126 (415)
Q Consensus 98 ---------~v~~~~~~-~~~d~lvlAtG~~~~~~~~i~ 126 (415)
.+.+.++. ..+|.||+++|+ .|......
T Consensus 282 ~~~~~Gev~~V~l~dg~~l~adlvv~GiG~-~p~t~~~~ 319 (478)
T KOG1336|consen 282 EGNSDGEVSEVKLKDGKTLEADLVVVGIGI-KPNTSFLE 319 (478)
T ss_pred ccCCCCcEEEEEeccCCEeccCeEEEeecc-cccccccc
Confidence 23334443 379999999999 55554444
No 254
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.33 E-value=0.0014 Score=69.34 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=62.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHh-hccCeEEEeceEece
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVV-QHERCSFFGNVTLGS 97 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~ 97 (415)
.++|+|||||+.|+.+|..|.+.+ .+|+||++.+.+. |. ...++...+.+.+ +..+++++.+..+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G--~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALG--SEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 568999999999999999999999 9999999887642 21 1123444445443 556888888765421
Q ss_pred --------EEEe--c-------cc---------ccccCEEEEccCCCCCCC
Q 014990 98 --------SVSL--S-------EL---------RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~--~-------~~---------~~~~d~lvlAtG~~~~~~ 122 (415)
.+.+ . .. ...+|.|++|+|. .|..
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr-~Pnt 429 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR-KPNT 429 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc-ccCC
Confidence 0211 1 01 3478999999998 4443
No 255
>PRK07121 hypothetical protein; Validated
Probab=97.33 E-value=0.00031 Score=72.28 Aligned_cols=41 Identities=32% Similarity=0.358 Sum_probs=36.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...+|||||+|.||++||.++++.| .+|+|+||.+..||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCcc
Confidence 4679999999999999999999999 9999999998766543
No 256
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.33 E-value=0.00031 Score=72.45 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+..++|+|||||..|+++|..|+++| .+|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG--~~V~LlEk~d~~~G 43 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRG--LKVLLCEKDDLAQG 43 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCC
Confidence 45689999999999999999999999 99999999975443
No 257
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00032 Score=69.52 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=35.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.+++|+|||||.+|+++|++|++.| .+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G--~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERG--ADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcC--CEEEEEecCccCC
Confidence 36789999999999999999999999 8999999887544
No 258
>PRK11445 putative oxidoreductase; Provisional
Probab=97.32 E-value=0.00025 Score=69.66 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.++|+||||||||+++|..|++. ++|+|+|+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~---~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK---MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc---CCEEEEECCCc
Confidence 37899999999999999999875 79999998864
No 259
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.32 E-value=0.0014 Score=62.30 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
+|+|||+|++|+.+|..|.+ .+ .+|+++.+..
T Consensus 2 dvvIIG~G~aGl~aA~~l~~--------------------~g-~~v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR--------------------AN-LKTLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH--------------------CC-CCEEEEeccC
Confidence 58999999999999999986 34 4799998764
No 260
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.30 E-value=0.00035 Score=72.12 Aligned_cols=39 Identities=15% Similarity=0.120 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|+|||||..|+++|..|+++| .+|+|||+++..+|
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rG--l~V~LvEk~d~~~G 43 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRG--LSVLLCEQDDLASA 43 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCC
Confidence 5689999999999999999999999 99999999865443
No 261
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.29 E-value=0.0021 Score=63.34 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHc----CCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKA----HQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNV 93 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~----g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (415)
..++|+|||+|++|+.+|..|.+. +...+|+|+. .+.+. +. ...+....+.+.+++.+++++.++
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~ 212 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGA 212 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCC
Confidence 456899999999999999999863 2124899993 32211 11 122445566777888899999887
Q ss_pred Eece----EEEeccc-ccccCEEEEccCCC
Q 014990 94 TLGS----SVSLSEL-RQLYHVVVLAYGAE 118 (415)
Q Consensus 94 ~v~~----~v~~~~~-~~~~d~lvlAtG~~ 118 (415)
.+.. .+.+.++ ...+|.||+|+|..
T Consensus 213 ~v~~i~~~~v~~~~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 213 PVTRGPDGALILADGRTLPADAILWATGAR 242 (364)
T ss_pred eeEEEcCCeEEeCCCCEEecCEEEEccCCC
Confidence 6532 2444333 35799999999983
No 262
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.29 E-value=0.00027 Score=70.02 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+|+||||||||+++|..|++.| +++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLG-KIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCC-CceEEEEeCCCc
Confidence 5999999999999999999985 389999999864
No 263
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.28 E-value=0.00033 Score=71.40 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|+|||||..|+++|++|++.+|+.+|+|+|++..
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 35799999999999999999999844499999999754
No 264
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.28 E-value=0.00036 Score=68.76 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||.+|+++|++|++.+ .+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G--~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRG--LSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 47999999999999999999998 99999999864
No 265
>PRK06996 hypothetical protein; Provisional
Probab=97.26 E-value=0.00033 Score=69.99 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=33.8
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCC--CceEEEEcCCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVDIIDRLP 54 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~lie~~~ 54 (415)
..+..++|+||||||+|+++|..|++.|- +.+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34567899999999999999999999861 25899999975
No 266
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.26 E-value=0.00034 Score=70.23 Aligned_cols=34 Identities=41% Similarity=0.559 Sum_probs=31.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|+|||||.+|+++|.+|++.+ .+|+|+|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g--~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAG--HEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCCc
Confidence 47999999999999999999998 99999999753
No 267
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.25 E-value=0.00036 Score=71.53 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=35.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+..++|+|||||..|+++|++|++.+|+.+|+|+||.+.+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 4668999999999999999999998666999999998653
No 268
>PRK10262 thioredoxin reductase; Provisional
Probab=97.24 E-value=0.0024 Score=61.78 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=62.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|||+|+.|+.+|..|++.+ .+|+++++.+.+. .. ......+.+.++..++++..+..+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~--~~Vtlv~~~~~~~--------~~----~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIA--SEVHLIHRRDGFR--------AE----KILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhC--CEEEEEEECCccC--------CC----HHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 4679999999999999999999998 9999999876421 11 23345566667778898888765411
Q ss_pred ---------EEEecc-------cccccCEEEEccCCC
Q 014990 98 ---------SVSLSE-------LRQLYHVVVLAYGAE 118 (415)
Q Consensus 98 ---------~v~~~~-------~~~~~d~lvlAtG~~ 118 (415)
.+...+ ....+|.||+|+|..
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~ 247 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHS 247 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCc
Confidence 122221 124789999999983
No 269
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.23 E-value=0.00039 Score=68.81 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
+|+|||||+||+++|..|++..++.+|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 69999999999999999998723399999999876554
No 270
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.22 E-value=0.00039 Score=71.87 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+| ||++||.++++.| .+|+|||+.+..||
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 46799999999 9999999999999 99999999876554
No 271
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.18 E-value=0.00051 Score=72.18 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=33.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
.+.+|||||+|.||++||..+++.| .+|+|+||.+..+
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lieK~~~~~ 39 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAG--VHVDLFSLVPVKR 39 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcC--CcEEEEEccCCCC
Confidence 3568999999999999999999998 9999999986543
No 272
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.16 E-value=0.00051 Score=72.02 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||||.||++||..+++.+++.+|+|+||....+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 468999999999999999999886558999999986533
No 273
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.16 E-value=0.011 Score=60.34 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..++|+|||+|++|+-+|..|.+ .| .+++++.++.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~--------------------~G-~~v~vfE~~~ 43 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRR--------------------EG-HTVVVFEREK 43 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHh--------------------cC-CeEEEEecCC
Confidence 56899999999999999999986 34 4799998875
No 274
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.13 E-value=0.00055 Score=72.24 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++.| .+|+|+||....++
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~lveK~~~~~g 66 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELG--YKTACISKLFPTRS 66 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEeccCCCCC
Confidence 3679999999999999999999998 99999999865443
No 275
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.13 E-value=0.00061 Score=72.73 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=32.7
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.++|+|||||.+|+++|++|+++| .+|+|+|+...+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G--~~V~VlE~~~~~ 295 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRG--WQVTLYEADEAP 295 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CeEEEEecCCCc
Confidence 369999999999999999999999 999999998543
No 276
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.12 E-value=0.00011 Score=64.83 Aligned_cols=43 Identities=30% Similarity=0.368 Sum_probs=38.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+|+|||+|.|||++|+.+.++.|+.+|.|||..-.+||-..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW 118 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW 118 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence 5689999999999999999999999999999999877766543
No 277
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.12 E-value=0.00065 Score=69.37 Aligned_cols=34 Identities=32% Similarity=0.348 Sum_probs=31.9
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|||||+|.||++||..+++.| .+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G--~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKG--FDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 79999999999999999999998 99999999753
No 278
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.11 E-value=0.00058 Score=72.21 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G--~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHG--FNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcC--CcEEEEEcCCCCC
Confidence 568999999999999999999998 9999999986543
No 279
>PLN03000 amine oxidase
Probab=97.11 E-value=0.00073 Score=72.65 Aligned_cols=43 Identities=26% Similarity=0.393 Sum_probs=39.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
...++|+|||||++|+++|..|.+.+ .+|+|+|+.+.+||...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcc
Confidence 35789999999999999999999999 99999999999998654
No 280
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.10 E-value=0.0026 Score=60.36 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=32.9
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
....+|+|||+|.-|+++|+.|++++ .++.|+|+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g--~killLeqf~ 40 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRG--DKILLLEQFP 40 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcC--CeEEEEeccC
Confidence 35678999999999999999999999 9999999874
No 281
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.10 E-value=0.00066 Score=70.80 Aligned_cols=40 Identities=30% Similarity=0.305 Sum_probs=35.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC--CCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP--TPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~--~~gg~ 59 (415)
...+|||||+|.||++||..+++.| .+|+|+|+.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G--~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAG--KRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCCc
Confidence 4578999999999999999999999 9999999998 55553
No 282
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.09 E-value=0.0006 Score=68.09 Aligned_cols=35 Identities=29% Similarity=0.275 Sum_probs=31.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
.+|+|||||.||+++|..|++.| .+|+|||+.+..
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G--~~V~LiE~rp~~ 35 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAG--VPVILYEMRPEK 35 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEeccccc
Confidence 37999999999999999999999 999999976553
No 283
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.09 E-value=0.00076 Score=70.26 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=33.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||..|+++|..|+++| .+|+|||+.+.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG--~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRG--LRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcC--CeEEEEECCCC
Confidence 4689999999999999999999999 99999999764
No 284
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.09 E-value=0.0017 Score=64.91 Aligned_cols=126 Identities=16% Similarity=0.218 Sum_probs=62.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc-------------------------
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------------------------- 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~------------------------- 215 (415)
+|+|||+|++|+=+|..+++ .+ .+|.++.|....
T Consensus 2 dviIIGgGaAGl~aA~~aa~--------------------~g-~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~ 60 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE--------------------KG-ARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFL 60 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH--------------------TT---EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEE
T ss_pred cEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEeCCcccccceeecCCCCccccccccchhhHh
Confidence 58999999999999999975 12 355555554211
Q ss_pred -------------cCCCCHHHHHHHHcCCCeeEEEc-ccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCce
Q 014990 216 -------------QAACTAKELREILGIKNLYVHIR-EDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQR 281 (415)
Q Consensus 216 -------------~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 281 (415)
...|..+.+.+.+...++..... ...++|.......+ .+.|..... +.
T Consensus 61 ~~~~~~~~f~~~~l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~V---------v~~L~~~l~---------~~ 122 (409)
T PF03486_consen 61 SGYGRNPKFLKSALKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSV---------VDALLEELK---------RL 122 (409)
T ss_dssp CS-TBTTTCTHHHHHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHH---------HHHHHHHHH---------HH
T ss_pred hhcccchHHHHHHHhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHH---------HHHHHHHHH---------Hc
Confidence 11123355555666667666543 33344333222222 233333222 56
Q ss_pred eEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 282 ELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 282 ~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
|+++++++.+..+. . +++.+-.|.+. +..++.||.||+|+|...
T Consensus 123 gv~i~~~~~V~~i~--~-~~~~~f~v~~~------------------~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 123 GVEIHFNTRVKSIE--K-KEDGVFGVKTK------------------NGGEYEADAVILATGGKS 166 (409)
T ss_dssp T-EEE-S--EEEEE--E-ETTEEEEEEET------------------TTEEEEESEEEE----SS
T ss_pred CCEEEeCCEeeeee--e-cCCceeEeecc------------------CcccccCCEEEEecCCCC
Confidence 89999999999886 3 34443444431 223899999999999765
No 285
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.07 E-value=0.00079 Score=67.04 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=37.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+||+|||||..|+++|..|.+..|+.+|+|+||.+.++.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~ 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc
Confidence 56899999999999999999999999999999999977553
No 286
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.07 E-value=0.00076 Score=68.06 Aligned_cols=43 Identities=21% Similarity=0.107 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
++.++|+|||+|.+|+.+|..|++.| .+|.++|++++.||...
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 45789999999999999999999999 99999999999998765
No 287
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.06 E-value=0.00068 Score=69.39 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=32.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
.+|+|||||.+|+++|..|++..|+.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 479999999999999999999855599999999764
No 288
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.06 E-value=0.00069 Score=70.46 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G--~~VilleK~~~~~ 52 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAG--RRVLVVTKAALDD 52 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CeEEEEEccCCCC
Confidence 4689999999999999999999998 9999999987654
No 289
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.06 E-value=0.00082 Score=70.49 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=36.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
....+|||||+|.||++||..+++.| .+|+|+|+.+..||
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~G--~~VivlEk~~~~gG 48 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAARG--LDTLVVEKSAHFGG 48 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCC--CcEEEEEcCCCCCc
Confidence 35689999999999999999999999 99999999987665
No 290
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.05 E-value=0.00081 Score=70.70 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+++.| .+|+|||+...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G--~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAG--LSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCC
Confidence 4679999999999999999999998 99999999753
No 291
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.05 E-value=0.0008 Score=68.93 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=34.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...++|||||||..|+++|..|++.++..+|+|+|+.+.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 357899999999999999999999865679999999864
No 292
>PLN02661 Putative thiazole synthesis
Probab=97.05 E-value=0.012 Score=57.30 Aligned_cols=124 Identities=10% Similarity=0.109 Sum_probs=63.6
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCCC-CcccCCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVNG-LPFDNHK 358 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~~-~~~~~~~ 358 (415)
..+++++....+.+++ . +++.+.++.+....... ++.- ....+...+.++.||+|||..++.... ..+....
T Consensus 185 ~~gVkI~~~t~V~DLI--~-~~grVaGVVvnw~~v~~--~~~~--~s~~dp~~I~AkaVVlATGh~g~~ga~~~~~~~~~ 257 (357)
T PLN02661 185 RPNVKLFNAVAAEDLI--V-KGDRVGGVVTNWALVAQ--NHDT--QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSI 257 (357)
T ss_pred cCCCEEEeCeEeeeEE--e-cCCEEEEEEeecchhhh--ccCC--CCccceeEEECCEEEEcCCCCCcchhhhhhccccc
Confidence 4579999988888887 4 46677777642110000 0000 000122479999999999966522100 0011111
Q ss_pred Ccc----------ccCCCceeeccCCCCCcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 359 GIV----------PNIRGRVLKNISGDSSQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 359 g~~----------~~~~G~i~v~~~~~~~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
|+. .+..-...|++ ..--+||+|+.|-... .| .-++..=+..|+.||+.|.+
T Consensus 258 g~~~~~pg~~~~~~~~~e~~~v~~---t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~ 325 (357)
T PLN02661 258 GMIDSVPGMKALDMNAAEDAIVRL---TREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALK 325 (357)
T ss_pred CCccCCCCccccchhhHHHHHHhc---cCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHH
Confidence 111 01111112222 2345899999996652 12 12343446678888887654
No 293
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.00 E-value=0.0009 Score=69.87 Aligned_cols=39 Identities=26% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||+++|..+++.| .+|+|||+.+..||
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G--~~v~liEk~~~~gG 43 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSG--LEPLIVEKQDKVGG 43 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCc
Confidence 4679999999999999999999999 99999999876555
No 294
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.00 E-value=0.00085 Score=70.39 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.+++.+|+|+||....+
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~ 42 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMR 42 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCC
Confidence 468999999999999999999886558999999986543
No 295
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.00 E-value=0.00098 Score=67.74 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=29.3
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCC-ceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQE-AQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~-~~v~lie~~~~ 55 (415)
+|||||||+||..+|..|++.++. .+|+|||+...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~ 36 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI 36 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 699999999999999999999966 89999998764
No 296
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.0078 Score=53.91 Aligned_cols=202 Identities=20% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc------cCCCCH-----HHHHH
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV------QAACTA-----KELRE 226 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~------~~~~~~-----~~l~~ 226 (415)
....|+|||+|++|+-+|..|++ ..-+|.++.|+-.+ ...+++ ++..+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk---------------------~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~ 87 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK---------------------AGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADE 87 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh---------------------CCceEEEEEeecccCCcccccccccceeeecchHHH
Confidence 45779999999999999999997 34589999988221 112221 34444
Q ss_pred HHcCCCeeEEEcccccCCCCCcHHhhhchHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCC-Cee
Q 014990 227 ILGIKNLYVHIREDDLIKSPTDEEEMKNSRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSG-HVS 305 (415)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~-~v~ 305 (415)
++..-++.-+-.+..+. ..... +... .++.+.. +.|.++....++..++ . .++ .+.
T Consensus 88 iL~e~gI~ye~~e~g~~--v~ds~----e~~s----kl~~~a~----------~aGaki~n~~~veDvi--~-r~~~rVa 144 (262)
T COG1635 88 ILDEFGIRYEEEEDGYY--VADSA----EFAS----KLAARAL----------DAGAKIFNGVSVEDVI--V-RDDPRVA 144 (262)
T ss_pred HHHHhCCcceecCCceE--EecHH----HHHH----HHHHHHH----------hcCceeeecceEEEEE--E-ecCCceE
Confidence 44432322222111110 00000 1111 1222211 5567777777777766 3 344 677
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCCccCC----CCc-c-cCCCC--ccccCCC-ceeeccCCCC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKSVPVN----GLP-F-DNHKG--IVPNIRG-RVLKNISGDS 376 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p~~~~----~~~-~-~~~~g--~~~~~~G-~i~v~~~~~~ 376 (415)
++...-..... .+. .-.-.+++++.|+=+||...+-.. +++ + .+-.| -...+.+ ...+++ .
T Consensus 145 GvVvNWt~V~~--~~l-----hvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~---T 214 (262)
T COG1635 145 GVVVNWTPVQM--AGL-----HVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELGIEVPGEKSMWAERGEDLVVEN---T 214 (262)
T ss_pred EEEEecchhhh--ccc-----ccCcceeeEEEEEeCCCCchHHHHHHHHhccccccccCCCcchhhhHHHHHHHhc---c
Confidence 77653211000 000 011236889999999997763210 111 0 00000 0111112 233333 3
Q ss_pred CcccCCeeeeecccc----CC--ccchhhhhhhHHHHHhhccc
Q 014990 377 SQVENGLYVCGWLKR----GP--TGIIATNLYCAEETVSSLSL 413 (415)
Q Consensus 377 ~t~~p~vfaiGD~~~----~~--~~~~~~a~~~g~~~a~~i~~ 413 (415)
..-+||+|++|-... .| .-++..=+..|+.+|+.|..
T Consensus 215 ~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 215 GEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 457999999996542 11 12343345678888877654
No 297
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.99 E-value=0.00098 Score=67.50 Aligned_cols=38 Identities=39% Similarity=0.478 Sum_probs=33.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
+|||||+|.||++||..+++.| ..+|+|+|+.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G-~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAG-AANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CccEEEEecCCCCCCc
Confidence 6999999999999999999986 2699999999876543
No 298
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.98 E-value=0.00089 Score=70.16 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=34.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+|+|||+|.||++||..+++.+++.+|+|+||....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4689999999999999999998865589999999865443
No 299
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.98 E-value=0.00084 Score=70.32 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=31.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|||||+|.||++||..+++.| .+|+|+||....
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G--~~V~lleK~~~~ 34 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAG--LNTAVISKVYPT 34 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 6999999999999999999999 999999998653
No 300
>PLN02976 amine oxidase
Probab=96.98 E-value=0.001 Score=74.29 Aligned_cols=44 Identities=27% Similarity=0.385 Sum_probs=39.5
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
....++|+|||||++|+++|..|.+.| .+|+|||+.+.+||.+.
T Consensus 690 ~~~~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 690 SVDRKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVY 733 (1713)
T ss_pred cCCCCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCcee
Confidence 345789999999999999999999999 99999999998888754
No 301
>PRK08275 putative oxidoreductase; Provisional
Probab=96.98 E-value=0.00097 Score=69.61 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|||||+|.||++||..+++.+++.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 35799999999999999999998754489999999865
No 302
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=96.96 E-value=0.0011 Score=69.97 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
+.++|||||||..|.++|..|+++| .+|+|||+.+..+|.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rG--l~V~LvE~~d~a~Gt 109 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRG--LRVGLVEREDFSSGT 109 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccccCCCc
Confidence 4589999999999999999999999 999999998654443
No 303
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.96 E-value=0.0009 Score=70.79 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
..++|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G--~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERG--LRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCC--CCEEEEeccCCC
Confidence 3568999999999999999999999 999999998654
No 304
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.95 E-value=0.00098 Score=69.72 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+||.+..
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G--~~V~lveK~~~~ 40 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAG--FKVAVISKVFPT 40 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCC--CcEEEEEccCCC
Confidence 3579999999999999999999998 999999998543
No 305
>PRK12839 hypothetical protein; Provisional
Probab=96.93 E-value=0.0013 Score=68.69 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=36.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
....+|+|||+|.+|+++|..+++.+ .+|+|||+.+..||.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g--~~v~~iek~~~~gg~ 46 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGG--AKVLVVEKASTCGGA 46 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcc
Confidence 35789999999999999999999999 999999998776654
No 306
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.92 E-value=0.0012 Score=64.37 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|+|||||.+|+++|..|.++| .+|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G--~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKG--IDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcC--CeEEEEeeccc
Confidence 568999999999999999999999 99999998643
No 307
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.92 E-value=0.0011 Score=69.86 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+++.| .+|+|+||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G--~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAG--LKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCC
Confidence 4679999999999999999999998 99999999854
No 308
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.91 E-value=0.0019 Score=62.17 Aligned_cols=94 Identities=17% Similarity=0.262 Sum_probs=71.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
.+-+++++|||||..||..+.-..|.| .+||++|-.+..++.+. .++...++..++..++.|..++.+
T Consensus 208 ~~vPk~~~viG~G~IGLE~gsV~~rLG--seVT~VEf~~~i~~~mD----------~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 208 KEVPKKLTVIGAGYIGLEMGSVWSRLG--SEVTVVEFLDQIGGVMD----------GEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred hhCcceEEEEcCceeeeehhhHHHhcC--CeEEEEEehhhhccccC----------HHHHHHHHHHHHhcCceeEeccEE
Confidence 346789999999999999999999999 99999998887765532 366777788888889999998876
Q ss_pred ce---------EEEeccc------ccccCEEEEccCCCCCCC
Q 014990 96 GS---------SVSLSEL------RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 96 ~~---------~v~~~~~------~~~~d~lvlAtG~~~~~~ 122 (415)
.. .+++.+. ..+.|.|.+|+|. .|..
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGR-rP~t 316 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGR-RPFT 316 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccC-cccc
Confidence 22 1222221 1268999999997 3443
No 309
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.91 E-value=0.0013 Score=68.60 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...++|||||+| +|++||..+++.| .+|+|+||.+..||.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~ 53 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGS 53 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCc
Confidence 458899999999 8999999999999 999999999887774
No 310
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.90 E-value=0.0057 Score=63.31 Aligned_cols=86 Identities=10% Similarity=0.128 Sum_probs=58.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhc-cCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQH-ERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 96 (415)
..++|+|||||+.|+.+|..|++.+ .+|+++++.+.+. . . ..+...++. .+++++.++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g--~~Vtli~~~~~l~--------~-----~---~~l~~~l~~~~gV~i~~~~~v~ 412 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIV--RHVTVLEFADELK--------A-----D---KVLQDKLKSLPNVDILTSAQTT 412 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC--cEEEEEEeCCcCC--------h-----h---HHHHHHHhcCCCCEEEECCeeE
Confidence 4679999999999999999999998 8999998765431 0 1 122333443 588888776541
Q ss_pred e---------EEEecc------cccccCEEEEccCCCCCCC
Q 014990 97 S---------SVSLSE------LRQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 97 ~---------~v~~~~------~~~~~d~lvlAtG~~~~~~ 122 (415)
. .+...+ ....+|.|++|+|. .|..
T Consensus 413 ~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~-~Pn~ 452 (515)
T TIGR03140 413 EIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGL-VPNT 452 (515)
T ss_pred EEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCC-cCCc
Confidence 1 122221 12468999999998 4443
No 311
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.90 E-value=0.0039 Score=63.40 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=32.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|+|||||+.|+-+|..|.+.| .+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G--~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLG--AEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CEEEEEeecCc
Confidence 4679999999999999999999999 89999987753
No 312
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.90 E-value=0.0012 Score=69.30 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...+|||||+|.||++||..+++.| .+|+|+||....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G--~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSG--QSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEEccCCCC
Confidence 4579999999999999999999998 9999999985533
No 313
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.90 E-value=0.015 Score=56.72 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
...|+|||+|++|+=+|..+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~ 24 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAK 24 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhh
Confidence 4679999999999999999886
No 314
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.90 E-value=0.0013 Score=67.24 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..++|||||||.+|.++|..|++..|+.+|+|+|+.+.++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 5679999999999999999999997779999999954544
No 315
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.0061 Score=61.75 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .+...+.++.++.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~--------------------~g~~~~~i~Ek~~ 42 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQ--------------------AGVPDFVIFEKRD 42 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--------------------cCCCcEEEEEccC
Confidence 56789999999999999999996 5665588888874
No 316
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.88 E-value=0.002 Score=66.49 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=35.6
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
++|+|||+||+|+.+|..|++.+ .+|++||++...++.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g--~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAG--LKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCC--CeEEEEeccCccCCCc
Confidence 58999999999999999999999 9999999998877543
No 317
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.87 E-value=0.0012 Score=69.64 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHc--CCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKA--HQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~--g~~~~v~lie~~~~ 55 (415)
..+|||||+|.||++||..+++. | .+|+||||.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G--~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPD--LKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCC--CeEEEEECCCc
Confidence 56999999999999999999998 7 99999999864
No 318
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.87 E-value=0.0013 Score=69.82 Aligned_cols=37 Identities=27% Similarity=0.290 Sum_probs=32.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+|+...+
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G--~~VilieK~~~~ 70 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELG--YNVKVFCYQDSP 70 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcC--CcEEEEecCCCC
Confidence 3569999999999999999999998 999999986543
No 319
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=96.84 E-value=0.0029 Score=56.40 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=47.4
Q ss_pred CCceEEEecCeeEEeeccCCcc--CCCCc---c---------------c-------------CCCCccccCCCceeeccC
Q 014990 327 TGEFEDLDCGMVLKSIGYKSVP--VNGLP---F---------------D-------------NHKGIVPNIRGRVLKNIS 373 (415)
Q Consensus 327 ~g~~~~i~~D~vi~atG~~p~~--~~~~~---~---------------~-------------~~~g~~~~~~G~i~v~~~ 373 (415)
+++..++.+|.+|+|||..|.. +++.. + . ...++.++++|++.+|+.
T Consensus 103 ~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~~~l~~~~~~~~~~~g~i~vd~~ 182 (201)
T PF07992_consen 103 TGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGTEFLAEKLGVELDENGFIKVDEN 182 (201)
T ss_dssp TTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEESTTTSTHHTTSTBTTTSSBEEBTT
T ss_pred cCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566799999999999988753 22210 0 0 233566788899999997
Q ss_pred CCCCcccCCeeeeeccccC
Q 014990 374 GDSSQVENGLYVCGWLKRG 392 (415)
Q Consensus 374 ~~~~t~~p~vfaiGD~~~~ 392 (415)
++++.|||||+|||+..
T Consensus 183 --~~t~~~~Iya~GD~a~~ 199 (201)
T PF07992_consen 183 --LQTSVPGIYAAGDCAGI 199 (201)
T ss_dssp --SBBSSTTEEE-GGGBEE
T ss_pred --ccccccccccccccccc
Confidence 89999999999999854
No 320
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.84 E-value=0.0036 Score=69.03 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|+|||+|++|+.+|..|.+ .| .+|+++.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--------------------~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--------------------EG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeeCCC
Confidence 58999999999999999999996 34 48999988753
No 321
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.83 E-value=0.0019 Score=64.38 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+|||+|.|||++|..|.+. .+|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC---CcEEEEeCCCCC
Confidence 799999999999999999987 799999998764
No 322
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.82 E-value=0.0013 Score=66.50 Aligned_cols=38 Identities=24% Similarity=0.236 Sum_probs=32.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..++|||||+|.||++||..+. .+ .+|+|+||.+..++
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G--~~V~lleK~~~~gg 40 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KD--LKILMVSKGKLNEC 40 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cC--CCEEEEecCCCCCC
Confidence 3569999999999999999984 57 99999999876444
No 323
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.81 E-value=0.0015 Score=67.13 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
..+|||||+|.||++||..+++.+ . |+|+||.+..+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G--~-V~lleK~~~~~ 37 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQG--R-VIVLSKAPVTE 37 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCC--C-EEEEEccCCCC
Confidence 368999999999999999999988 6 99999986543
No 324
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=0.0044 Score=62.48 Aligned_cols=34 Identities=24% Similarity=0.274 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
..++|+|||||.||..||...+|.| .++.|+--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG--~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMG--AKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccC--CeEEEEEcC
Confidence 4589999999999999999999999 888887554
No 325
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.80 E-value=0.0091 Score=57.90 Aligned_cols=34 Identities=29% Similarity=0.402 Sum_probs=26.8
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|.+|+-+|..|++ .| -+|+++.|++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~--------------------~G-~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALAR--------------------AG-IDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHH--------------------TT-CEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cc-cccccchhcccc
Confidence 69999999999999999997 44 479999998543
No 326
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.80 E-value=0.0015 Score=68.17 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=33.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+. .+ .+|+|+||.+..++
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G--~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SH--LRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cC--CCEEEEEccCCCCC
Confidence 5679999999999999999996 47 89999999876554
No 327
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.75 E-value=0.0013 Score=62.66 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=29.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
+|+||||+|+||..+|.+|++.+ ..+|+|+|+++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBSC
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEccccC
Confidence 58999999999999999999875 4699999988653
No 328
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.75 E-value=0.0017 Score=67.04 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.5
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
..+|||||+|.||++||..+++ + .+|+|+||.+..++
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g--~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-E--YNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-C--CCEEEEeccCCCCC
Confidence 5799999999999999999976 7 89999999876444
No 329
>PRK12831 putative oxidoreductase; Provisional
Probab=96.74 E-value=0.01 Score=60.53 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...++|+|||||+.|+-+|..|.+.| .+|+++.+.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~G--a~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLG--AEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcC--CEEEEEeecC
Confidence 45689999999999999999999999 8899998765
No 330
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.0024 Score=60.20 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
..+++|||+|.+|+-+|..|++.| .+|.|||+.+..||-..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaY 41 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCccc
Confidence 368999999999999999999989 99999999999998654
No 331
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.72 E-value=0.0019 Score=67.76 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=33.8
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-CceEEEEcCCCCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQ-EAQVDIIDRLPTPFG 58 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~-~~~v~lie~~~~~gg 58 (415)
..+|||||+|.||++||..+++.|+ ..+|+|+||....++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCC
Confidence 4689999999999999999999863 269999999865443
No 332
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.71 E-value=0.0048 Score=60.28 Aligned_cols=40 Identities=35% Similarity=0.353 Sum_probs=31.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
....++|+|||||.++...+..|.+.++..+|+++-|...
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 4578899999999999999999999987789999998753
No 333
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.70 E-value=0.0027 Score=62.06 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=64.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--------C----CceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--------Q----EAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHE 85 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--------~----~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (415)
+..++|||||||.|+.+|..|+..- | +.+|+|+|..+..- +.+ .+.+.++-.+++.+.
T Consensus 217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--------~mF--dkrl~~yae~~f~~~ 286 (491)
T KOG2495|consen 217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--------NMF--DKRLVEYAENQFVRD 286 (491)
T ss_pred heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--------HHH--HHHHHHHHHHHhhhc
Confidence 3457899999999999999997432 1 36899999766421 221 234566777788888
Q ss_pred CeEEEeceEec----eEEEec--cc---ccccCEEEEccCCCCCCC
Q 014990 86 RCSFFGNVTLG----SSVSLS--EL---RQLYHVVVLAYGAESDRA 122 (415)
Q Consensus 86 ~~~~~~~~~v~----~~v~~~--~~---~~~~d~lvlAtG~~~~~~ 122 (415)
++.+..++.|. +++..+ ++ .+.|--||-|||. .+++
T Consensus 287 ~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~-~~rp 331 (491)
T KOG2495|consen 287 GIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGN-GPRP 331 (491)
T ss_pred cceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCC-CCch
Confidence 99998887662 223222 22 2479999999998 3444
No 334
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.70 E-value=0.0024 Score=67.00 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
..++|+|||+|.+|+++|..+++.+ .+|+|+|+.+..||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g--~~v~l~ek~~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAG--LKVLLVERTEYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCCcc
Confidence 4679999999999999999999999 9999999988776654
No 335
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.68 E-value=0.002 Score=68.43 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+|||||+|.||++||..+++.| .+|+|+|+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G--~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRG--LDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcC--CCEEEEeCCCCC
Confidence 3568999999999999999999998 999999997653
No 336
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.65 E-value=0.0022 Score=72.64 Aligned_cols=40 Identities=35% Similarity=0.370 Sum_probs=36.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
...+|||||+|.||++||..+++.| .+|+|+||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~G--a~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCG--AQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CcEEEEEccCCCCCc
Confidence 4679999999999999999999999 999999999876654
No 337
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.62 E-value=0.0023 Score=66.61 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..+ +.+ .+|+|+||.+.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G--~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERG--KNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcC--CCEEEEEccCC
Confidence 356999999999999999999 888 99999999864
No 338
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.62 E-value=0.01 Score=60.33 Aligned_cols=75 Identities=20% Similarity=0.142 Sum_probs=51.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
..++|+|+|+|.+|+++|..|++.| ++|+++|+.... .. ....+.+...++++.......
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G--~~V~~~d~~~~~----------------~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG--AKVILTDEKEED----------------QL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchH----------------HH-HHHHHHHHhcCCEEEeCCcch-
Confidence 4688999999999999999999999 999999876520 11 111122344455554433321
Q ss_pred EEEecccccccCEEEEccCC
Q 014990 98 SVSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 98 ~v~~~~~~~~~d~lvlAtG~ 117 (415)
.....+|.||+++|.
T Consensus 64 -----~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGV 78 (450)
T ss_pred -----hHhhcCCEEEECCCC
Confidence 122368999999997
No 339
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.60 E-value=0.011 Score=58.06 Aligned_cols=34 Identities=26% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~ 54 (415)
.++|+|||+|+.|+.+|..|.+.+ .+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g--~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEeecc
Confidence 579999999999999999999888 76 99998764
No 340
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.58 E-value=0.0021 Score=67.63 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=30.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|||||+|.||++||..+++.| .+|+|+||.+.
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G--~~VilleK~~~ 32 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELG--YHVKLFSYVDA 32 (603)
T ss_pred CEEECccHHHHHHHHHHHHcC--CCEEEEEecCC
Confidence 699999999999999999998 99999999873
No 341
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.57 E-value=0.011 Score=60.37 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .....+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 57899999999999999999974 112358999998863
No 342
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0039 Score=58.99 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.+|+|||||.||++|+..|.+.| .+++||.++.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~G--k~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAG--KRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcC--CcEEEEeCCh
Confidence 468999999999999999999999 9999998873
No 343
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.54 E-value=0.0029 Score=66.58 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.7
Q ss_pred eEEEECCCHHHHHHHHHHH----HcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTL----KAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~----~~g~~~~v~lie~~~~ 55 (415)
+|||||+|.||++||..++ +.| .+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G--~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKG--LKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCC--CeEEEEEccCC
Confidence 6999999999999999998 567 89999999754
No 344
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.52 E-value=0.018 Score=57.63 Aligned_cols=36 Identities=28% Similarity=0.327 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.|++.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD--------------------SG-LRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc--------------------CC-CEEEEEecCCc
Confidence 35689999999999999999986 45 48999998754
No 345
>PRK06847 hypothetical protein; Provisional
Probab=96.49 E-value=0.031 Score=55.14 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..++|+|||+|.+|+-+|..|.+ .|. +|+++.|+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--------------------~g~-~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--------------------AGI-AVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--------------------CCC-CEEEEecCC
Confidence 45789999999999999999986 344 788998874
No 346
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.48 E-value=0.011 Score=65.10 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|+|||+|++|+.+|..|.+ .| .+|+++.+.+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--------------------~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--------------------AG-HPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecccc
Confidence 68999999999999999999996 34 48999988754
No 347
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.43 E-value=0.0041 Score=64.59 Aligned_cols=39 Identities=26% Similarity=0.426 Sum_probs=35.2
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
...++|||||||.||+.||..++..+ .+|+|+||....+
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g--~~V~l~~K~~~~r 42 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAG--LKVALLSKAPPKR 42 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcC--CcEEEEEccccCC
Confidence 46789999999999999999999999 9999999986533
No 348
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.41 E-value=0.004 Score=64.75 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++. .+|+|+||....+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccCCCCC
Confidence 457999999999999999999873 79999999876554
No 349
>PLN02815 L-aspartate oxidase
Probab=96.37 E-value=0.0046 Score=64.90 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFG 58 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg 58 (415)
...+|||||+|.||++||..+++.+ +|+|+||.+..++
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G---~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG---TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC---CEEEEECCCCCCC
Confidence 4579999999999999999999875 6999999876544
No 350
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.36 E-value=0.019 Score=59.50 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhh-ccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQ-HERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 96 (415)
+.++|+|||||+.|+.+|..|+..+ .+|+++++.+.+. +. . .+.+.+. ..|++++.++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~--~~Vtlv~~~~~l~--------~~-----~---~l~~~l~~~~gI~i~~~~~v~ 411 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIV--KHVTVLEFAPELK--------AD-----Q---VLQDKLRSLPNVTIITNAQTT 411 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC--CEEEEEEECcccc--------cc-----H---HHHHHHhcCCCcEEEECcEEE
Confidence 4679999999999999999999998 9999998776431 11 1 1222333 3588888876542
Q ss_pred e---------EEEecc---c---ccccCEEEEccCC
Q 014990 97 S---------SVSLSE---L---RQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~---------~v~~~~---~---~~~~d~lvlAtG~ 117 (415)
. .+...+ . ...+|.|++|+|.
T Consensus 412 ~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 412 EVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 1 122211 1 2469999999998
No 351
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.35 E-value=0.0058 Score=62.37 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=37.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
+..++|+|||||..|+.+|..++.+| ++|+|+|+++...|.+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RG--l~v~LvE~~D~AsGTS 51 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRG--LKVALVEKGDLASGTS 51 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCC--CeEEEEecCcccCccc
Confidence 37899999999999999999999999 9999999998755543
No 352
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.32 E-value=0.0096 Score=56.75 Aligned_cols=94 Identities=15% Similarity=0.159 Sum_probs=67.5
Q ss_pred cccCCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEe
Q 014990 12 FTALSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFG 91 (415)
Q Consensus 12 ~~~~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
|....+++++++|||||+.++..|.-++-.| .++-|+=|++.+- .. ..+.+.+...+.++..++++..
T Consensus 182 ff~Lee~Pkr~vvvGaGYIavE~Agi~~gLg--sethlfiR~~kvL--------R~--FD~~i~~~v~~~~~~~ginvh~ 249 (478)
T KOG0405|consen 182 FFDLEEQPKRVVVVGAGYIAVEFAGIFAGLG--SETHLFIRQEKVL--------RG--FDEMISDLVTEHLEGRGINVHK 249 (478)
T ss_pred ccchhhcCceEEEEccceEEEEhhhHHhhcC--CeeEEEEecchhh--------cc--hhHHHHHHHHHHhhhcceeecc
Confidence 3445578999999999999999999999999 8888877666531 11 1224556667778888899888
Q ss_pred ceEeceEEEecc---------ccc-ccCEEEEccCC
Q 014990 92 NVTLGSSVSLSE---------LRQ-LYHVVVLAYGA 117 (415)
Q Consensus 92 ~~~v~~~v~~~~---------~~~-~~d~lvlAtG~ 117 (415)
++.+...++..+ ..+ ..|.|+.|+|.
T Consensus 250 ~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR 285 (478)
T KOG0405|consen 250 NSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGR 285 (478)
T ss_pred cccceeeeecCCCceEEEEeccccccccEEEEEecC
Confidence 876643332222 222 58999999996
No 353
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.32 E-value=0.023 Score=57.88 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
..++|+|||||+.|+.+|..|.+.+ . +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G--~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLG--AESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 5789999999999999999999998 7 899998764
No 354
>PRK06184 hypothetical protein; Provisional
Probab=96.31 E-value=0.054 Score=55.88 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=29.4
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.-.|+|||+|++|+-+|..|.+ .|. +|+++.|.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--------------------~Gi-~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--------------------RGV-SFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCCC
Confidence 4579999999999999999996 455 7999988743
No 355
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.31 E-value=0.022 Score=58.25 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLPTP 56 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~~~ 56 (415)
..++|+|||||+.|+.+|..+.+.+ . +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~g--a~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQG--AKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEccccCCC
Confidence 5689999999999999999999888 5 78888766543
No 356
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.27 E-value=0.014 Score=59.43 Aligned_cols=77 Identities=19% Similarity=0.160 Sum_probs=51.0
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceEEE
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSVS 100 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~ 100 (415)
+|+|||.|++|+++|..|++.| ++|+++|+..... .......++..++.+..+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G--~~V~~~D~~~~~~-----------------~~~~~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQG--WEVVVSDRNDSPE-----------------LLERQQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCC--CEEEEECCCCchh-----------------hHHHHHHHHHcCCEEEECCccchh-h
Confidence 5899999999999999999999 9999999776531 111122234457777654432100 0
Q ss_pred ecccccccCEEEEccCC
Q 014990 101 LSELRQLYHVVVLAYGA 117 (415)
Q Consensus 101 ~~~~~~~~d~lvlAtG~ 117 (415)
.......+|.||+.+|.
T Consensus 62 ~~~~~~~~d~vv~s~gi 78 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGI 78 (459)
T ss_pred hhHHhhcCCEEEECCCC
Confidence 00122368999999988
No 357
>PRK02106 choline dehydrogenase; Validated
Probab=96.26 E-value=0.006 Score=63.83 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=32.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLK-AHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~-~g~~~~v~lie~~~~ 55 (415)
..+++||||+|+||+.+|.+|++ .+ .+|+|+|+++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g--~~VlvlEaG~~ 40 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPD--VSVLLLEAGGP 40 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCC--CeEEEecCCCc
Confidence 45899999999999999999999 56 99999999853
No 358
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.25 E-value=0.0022 Score=57.38 Aligned_cols=32 Identities=34% Similarity=0.494 Sum_probs=23.4
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|||+|++|+-+|..|.+ .+.+++.++.|+..
T Consensus 1 ~IIGaG~aGl~~a~~l~~--------------------~g~~~v~v~e~~~~ 32 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--------------------RGIDPVVVLERNDR 32 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--------------------TT---EEEEESSSS
T ss_pred CEECcCHHHHHHHHHHHh--------------------CCCCcEEEEeCCCC
Confidence 699999999999999986 56656999998843
No 359
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.24 E-value=0.0039 Score=61.25 Aligned_cols=49 Identities=22% Similarity=0.324 Sum_probs=41.0
Q ss_pred hccccc-CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 9 SRSFTA-LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 9 ~~~~~~-~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
-|.|+. +.+..++++|||+|.-||.||.+|+|.+ .+|+++|++...||-
T Consensus 3 rR~fS~~~~~~~ydavvig~GhnGL~aaayl~r~g--~~V~vlerrhv~gGa 52 (561)
T KOG4254|consen 3 RRSFSSLSAKPEYDAVVIGGGHNGLTAAAYLARYG--QSVAVLERRHVIGGA 52 (561)
T ss_pred cccccccCCCcccceEEecCCccchhHHHHHHhcC--cceEEEEEeeecCcc
Confidence 345533 3367899999999999999999999999 999999999766664
No 360
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.20 E-value=0.0057 Score=64.29 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=30.2
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..+|||||+|.||++||..+++ . .+|+|+||...
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~-~--~~VilleK~~~ 38 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP-R--ARTAVLTKLYP 38 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh-C--CCEEEEeCCCC
Confidence 5689999999999999999986 3 79999999854
No 361
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.19 E-value=0.013 Score=59.77 Aligned_cols=36 Identities=25% Similarity=0.421 Sum_probs=30.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--------------------~G-~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--------------------AG-VQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 67899999999999999999986 34 36999887753
No 362
>PRK06126 hypothetical protein; Provisional
Probab=96.18 E-value=0.029 Score=58.48 Aligned_cols=35 Identities=34% Similarity=0.453 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.|.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~--------------------~G~-~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR--------------------RGV-DSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--------------------CCC-cEEEEeCCC
Confidence 35689999999999999999996 454 789998874
No 363
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.17 E-value=0.0074 Score=58.73 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=36.1
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAP 66 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~ 66 (415)
|+|.|||.|+.|+..|..|++.| ++|+.+|..+.-=..+..+..|
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~G--HeVv~vDid~~KV~~ln~g~~P 45 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELG--HEVVCVDIDESKVELLNKGISP 45 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHhCCCCC
Confidence 68999999999999999999999 9999999875433333444434
No 364
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.15 E-value=0.027 Score=61.14 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=32.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~ 55 (415)
..++|+|||||+.|+-+|..+.+.| .+ |+++++.+.
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~G--a~~Vtlv~r~~~ 605 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRSE 605 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcC--CCeEEEeeecCc
Confidence 5689999999999999999999998 76 999987653
No 365
>PRK11445 putative oxidoreductase; Provisional
Probab=96.13 E-value=0.066 Score=52.50 Aligned_cols=31 Identities=26% Similarity=0.428 Sum_probs=27.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.|+|||+|++|+-+|..|++ . -+|+++.|.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~---------------------~-~~V~liE~~~ 33 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAG---------------------K-MKVIAIDKKH 33 (351)
T ss_pred eEEEECCCHHHHHHHHHHhc---------------------c-CCEEEEECCC
Confidence 59999999999999999986 3 5899999875
No 366
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=96.13 E-value=0.0095 Score=61.69 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
.|+|+|||+|++|+-.+..|.+ .|. +++++.+++.+
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e--------------------~g~-~~~~fE~~~~i 36 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLE--------------------EGL-EVTCFEKSDDI 36 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHH--------------------TT--EEEEEESSSSS
T ss_pred CCEEEEECccHHHHHHHHHHHH--------------------CCC-CCeEEecCCCC
Confidence 3799999999999999999986 353 78999998544
No 367
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.12 E-value=0.016 Score=61.59 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=31.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--------------------~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--------------------AGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--------------------cCC-cEEEEeCCCC
Confidence 58999999999999999999986 454 7999988764
No 368
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.12 E-value=0.0059 Score=67.42 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
..++|||||+|.||++||..+++.| .+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G--~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHG--ANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCC--CeEEEEecccc
Confidence 4578999999999999999999998 99999999864
No 369
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.12 E-value=0.062 Score=46.14 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.9
Q ss_pred EEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 163 VILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|||+|++|+-++..|.+.. ......+|++|.+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCc
Confidence 59999999999999998721 0123468999988643
No 370
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.10 E-value=0.022 Score=57.85 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.. +.+ .+|+++.+.+.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~-------------------~~g-~~VtlfEk~p~ 74 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLK-------------------HER-VKVDIFEKLPN 74 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-------------------hcC-CeEEEEecCCC
Confidence 57899999999999999998763 123 47999999864
No 371
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.08 E-value=0.0064 Score=53.95 Aligned_cols=86 Identities=19% Similarity=0.133 Sum_probs=44.8
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceEE
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSSV 99 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v 99 (415)
|+|.|||.|+.|+.+|..|++.| ++|+.+|.++..=..+..+..|.. ++ ...+.+.+..+..++.+-.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G--~~V~g~D~~~~~v~~l~~g~~p~~-E~-~l~~ll~~~~~~~~l~~t~-------- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKG--HQVIGVDIDEEKVEALNNGELPIY-EP-GLDELLKENVSAGRLRATT-------- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTT--SEEEEE-S-HHHHHHHHTTSSSS--CT-THHHHHHHHHHTTSEEEES--------
T ss_pred CEEEEECCCcchHHHHHHHHhCC--CEEEEEeCChHHHHHHhhcccccc-cc-chhhhhccccccccchhhh--------
Confidence 68999999999999999999999 999999988653223333332321 21 1222333333333332211
Q ss_pred EecccccccCEEEEccCC
Q 014990 100 SLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 100 ~~~~~~~~~d~lvlAtG~ 117 (415)
........+|.+++|.+.
T Consensus 69 ~~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPT 86 (185)
T ss_dssp EHHHHHHH-SEEEE----
T ss_pred hhhhhhhccceEEEecCC
Confidence 111122478999999997
No 372
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.08 E-value=0.056 Score=54.54 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..++|+|||+|++|+-.|..|.+ .| .+++++.|++.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--------------------~g-~~v~vfEr~~~i 41 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--------------------EG-HEVVVFERTDDI 41 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--------------------CC-CCceEEEecCCc
Confidence 57899999999999999999997 33 588888888533
No 373
>PRK07236 hypothetical protein; Provisional
Probab=96.07 E-value=0.069 Score=53.03 Aligned_cols=36 Identities=28% Similarity=0.245 Sum_probs=30.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||||.+|+.+|..|.+ .| -+|+++.|++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--------------------AG-WDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEecCCC
Confidence 46889999999999999999996 45 47999998753
No 374
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.04 E-value=0.05 Score=54.36 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=75.1
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcccCC------CCHHHHHHHHcCCC-
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPVQAA------CTAKELREILGIKN- 232 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~~~~------~~~~~l~~~~~~~~- 232 (415)
-.|+|||+|++|.-+|..|++ .| -+|.++.++.....+ .....+.++..++.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~--------------------~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~ 62 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAK--------------------AG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE 62 (396)
T ss_pred eeEEEECCchHHHHHHHHHHH--------------------cC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcch
Confidence 469999999999999999996 45 589999997544332 23344555544443
Q ss_pred -eeEEEcccccCCCCCcHHhhhc------hHHHHHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCee
Q 014990 233 -LYVHIREDDLIKSPTDEEEMKN------SRIQRRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVS 305 (415)
Q Consensus 233 -~~~~~~~~~~~~~p~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~ 305 (415)
+...+....+... .....+.. ...|.++.+.|...+. +.|..+...+.+..+. . +++.+.
T Consensus 63 ~i~~~v~~~~~~~~-~~~~~~~~~~~~~y~v~R~~fd~~La~~A~---------~aGae~~~~~~~~~~~--~-~~~~~~ 129 (396)
T COG0644 63 EIERKVTGARIYFP-GEKVAIEVPVGEGYIVDRAKFDKWLAERAE---------EAGAELYPGTRVTGVI--R-EDDGVV 129 (396)
T ss_pred hhheeeeeeEEEec-CCceEEecCCCceEEEEhHHhhHHHHHHHH---------HcCCEEEeceEEEEEE--E-eCCcEE
Confidence 2333333333222 11111110 1113333343443332 5688888888888876 4 233222
Q ss_pred eEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 306 GVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 306 ~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
.... .+. .++.+++||.|.|..
T Consensus 130 ~~~~-----------------~~~-~e~~a~~vI~AdG~~ 151 (396)
T COG0644 130 VGVR-----------------AGD-DEVRAKVVIDADGVN 151 (396)
T ss_pred EEEE-----------------cCC-EEEEcCEEEECCCcc
Confidence 1111 122 478888888888844
No 375
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.02 E-value=0.047 Score=53.88 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||||..|||+|..+++
T Consensus 1 DViVVGgG~AG~eAA~aaAr 20 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR 20 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHH
Confidence 48999999999999999997
No 376
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=95.97 E-value=0.09 Score=49.59 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.9
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|.+|+-+|..|.+ .+ .+|+++.|+..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~--------------------~g-~~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD--------------------KG-LRVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEeccCC
Confidence 48999999999999999986 34 47999998853
No 377
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.97 E-value=0.0092 Score=57.65 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
....+|+|||||.+|-+.|..|+|.| .+|.+|||.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdG--RrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDG--RRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCC--cEEEEEecc
Confidence 45778999999999999999999999 999999987
No 378
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.96 E-value=0.0075 Score=62.36 Aligned_cols=34 Identities=29% Similarity=0.338 Sum_probs=30.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...+|||||+|.||++||..++ + .+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~--~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--P--RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--c--CCEEEEECCCC
Confidence 4579999999999999999996 4 69999999876
No 379
>PLN02463 lycopene beta cyclase
Probab=95.95 E-value=0.075 Score=53.91 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.-.|+|||+|++|+-+|..|.+ .| .+|.++.+++
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~--------------------~G-l~V~liE~~~ 61 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSE--------------------AG-LSVCCIDPSP 61 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEeccCc
Confidence 3479999999999999999986 34 4788888864
No 380
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=95.94 E-value=0.071 Score=53.83 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=29.2
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
-.|+|||+|++|+-+|..|++ .| .+|.++.|....
T Consensus 6 ~DViIVGaGpAG~~aA~~La~--------------------~G-~~V~llEr~~~~ 40 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR--------------------EG-AQVLVIERGNSA 40 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEEcCCCC
Confidence 579999999999999999986 34 489999887543
No 381
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=95.89 E-value=0.067 Score=53.29 Aligned_cols=34 Identities=21% Similarity=0.348 Sum_probs=28.5
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|++|+-+|..|.+ .| .+|+++.|++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHL--------------------AG-IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHh--------------------cC-CCEEEEEcCCc
Confidence 569999999999999999986 34 47889988853
No 382
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.84 E-value=0.023 Score=58.34 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--------------------~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--------------------AG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--------------------cC-CeEEEEecCCC
Confidence 56899999999999999999986 34 47999988753
No 383
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=95.84 E-value=0.055 Score=53.64 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
-+|+|||+|++|+-+|..|.+ .| .+|+++.|+..
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 39 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ--------------------SG-LRVALLAPRAP 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEecCCC
Confidence 469999999999999999986 45 48999998754
No 384
>PRK06185 hypothetical protein; Provisional
Probab=95.82 E-value=0.046 Score=54.60 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
....|+|||||.+|+-+|..|.+ .| .+|+++.+.+
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--------------------~G-~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--------------------AG-VDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCC
Confidence 35679999999999999999986 34 4789998874
No 385
>PRK08244 hypothetical protein; Provisional
Probab=95.80 E-value=0.12 Score=53.10 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=28.4
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..|+|||+|++|+-+|..|.+ .| -+|+++.|.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--------------------~G-~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--------------------AG-VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCC
Confidence 469999999999999999986 45 47999988743
No 386
>PRK07045 putative monooxygenase; Reviewed
Probab=95.78 E-value=0.11 Score=51.46 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+|+|||+|++|+-+|..|.+ .|. +|+++.|.+..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~--------------------~G~-~v~v~E~~~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGA--------------------RGH-SVTVVERAARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHh--------------------cCC-cEEEEeCCCcc
Confidence 3579999999999999999996 454 78999887544
No 387
>PRK06834 hypothetical protein; Provisional
Probab=95.78 E-value=0.12 Score=53.23 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=28.9
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...|+|||+|++|+-+|..|.+ .| -+|+++.|.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--------------------~G-~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--------------------AG-VDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCC
Confidence 4679999999999999999996 45 4789998875
No 388
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.78 E-value=0.044 Score=57.32 Aligned_cols=61 Identities=25% Similarity=0.236 Sum_probs=44.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEe
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTL 95 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 95 (415)
..++|+|||||+.|+.+|..|.+.+ .+|+++++.+.+. .. .... ..+....+++++.++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g--~~Vtli~~~~~~~--------~~----~~~~---~~~~~~~gV~i~~~~~V 202 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYA--SKVTVIVREPDFT--------CA----KLIA---EKVKNHPKIEVKFNTEL 202 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccC--CEEEEEEeCCccc--------cC----HHHH---HHHHhCCCcEEEeCCEE
Confidence 4689999999999999999999998 9999999876430 11 1111 22234457888877655
No 389
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=95.76 E-value=0.025 Score=60.34 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|++|+.+|..|.+ .| .+|+++.+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--------------------~G-~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--------------------NG-VAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCC
Confidence 68999999999999999999986 45 47999988753
No 390
>PRK10015 oxidoreductase; Provisional
Probab=95.74 E-value=0.082 Score=53.41 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
-.|+|||+|++|+-+|..|++ .| .+|.++.|....
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~--------------------~G-~~VlliEr~~~~ 40 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR--------------------AG-LDVLVIERGDSA 40 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh--------------------CC-CeEEEEecCCCC
Confidence 479999999999999999986 34 479999887543
No 391
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.72 E-value=0.0061 Score=56.63 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=37.1
Q ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHcC----CCceEEEEcCCCCCCC
Q 014990 14 ALSSNPLRVCVVGSGPAGFYTAEKTLKAH----QEAQVDIIDRLPTPFG 58 (415)
Q Consensus 14 ~~~~~~~~VvIIGgG~AGl~aA~~L~~~g----~~~~v~lie~~~~~gg 58 (415)
.+..+.++|+|||||..|.++|++|.+++ ...+|+|||.....|+
T Consensus 5 ~r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~g 53 (380)
T KOG2852|consen 5 SREGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGG 53 (380)
T ss_pred cccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccc
Confidence 34556799999999999999999999887 2479999999865444
No 392
>PRK09897 hypothetical protein; Provisional
Probab=95.63 E-value=0.072 Score=55.16 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.7
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
++|+|||+|++|+-++..|.+ ....-+|+++.++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~-------------------~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQ-------------------QQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHh-------------------cCCCCcEEEEecCC
Confidence 579999999999999999985 11223789998864
No 393
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.51 E-value=0.015 Score=46.25 Aligned_cols=35 Identities=37% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+.++|+|||||..|..-+..|.+.+ .+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~g--A~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAG--AKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCT--BEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEECCch
Confidence 6789999999999999999999999 9999998653
No 394
>PRK05868 hypothetical protein; Validated
Probab=95.51 E-value=0.15 Score=50.55 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
++|+|||+|.+|+-+|..|.+ .| .+|+++.+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--------------------HG-YSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--------------------CC-CCEEEEcCCCCC
Confidence 479999999999999999986 34 369999887543
No 395
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=95.43 E-value=0.14 Score=53.46 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--------------------~G~-~v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--------------------QGV-PVVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEeCCC
Confidence 34689999999999999999986 454 788888875
No 396
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=95.42 E-value=0.19 Score=52.42 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|++|+-+|..|.+ .| .+|+++.|...
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~--------------------~G-~~v~v~Er~~~ 44 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ--------------------YG-VRVLVLERWPT 44 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--------------------CC-CcEEEEecCCC
Confidence 35679999999999999999986 34 47889988753
No 397
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.41 E-value=0.026 Score=48.59 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|+|||||..|.++|..|++.+ .+|+|+.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g--~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG--HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC--CEEEEEeccH
Confidence 6899999999999999999999 9999998754
No 398
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=95.39 E-value=0.016 Score=58.47 Aligned_cols=46 Identities=13% Similarity=0.357 Sum_probs=0.0
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG 343 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG 343 (415)
+.|+++++++.+..+. . +++++.+|.+.+. .| ..++.++++|=|||
T Consensus 102 e~gv~v~~~t~v~~v~--~-~~~~i~~V~~~~~--------------~g-~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 102 EAGVEVLLGTRVVDVI--R-DGGRITGVIVETK--------------SG-RKEIRAKVFIDATG 147 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred cccccccccccccccc--c-ccccccccccccc--------------cc-cccccccccccccc
Confidence 6789999999999987 5 4667888876541 23 45899999999999
No 399
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.37 E-value=0.23 Score=49.56 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
++|+|||||.+|+-+|..|.+ .|. +|+++.|.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--------------------~G~-~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--------------------RGW-AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEecCCc
Confidence 789999999999999999986 343 7888888753
No 400
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.37 E-value=0.02 Score=54.05 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.5
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCc
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGL 59 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~ 59 (415)
.|||||+|.|||+++..+...+ -.|+|+|+....||-
T Consensus 11 pvvVIGgGLAGLsasn~iin~g--g~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKG--GIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcC--CeEEEEeccCCcCCc
Confidence 5999999999999999999998 779999999777763
No 401
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=95.37 E-value=0.072 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=28.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCC-cceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSS-IRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|++ .| .-+|+++.|++.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~--------------------~g~g~~v~liE~~~~ 37 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQ--------------------AAPHLPVTVVDAAPA 37 (403)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCCCEEEEEeCCCc
Confidence 58999999999999999986 33 358999998753
No 402
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.37 E-value=0.2 Score=49.77 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
..+|+|||+|++|+-+|..|++ .| -+|+++.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--------------------~G-~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--------------------AG-LDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEccC
Confidence 3579999999999999999996 45 589999887
No 403
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=95.36 E-value=0.12 Score=51.40 Aligned_cols=35 Identities=37% Similarity=0.408 Sum_probs=29.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|++|+-+|..|.+ .|. +|+++.|.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~--------------------~G~-~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD--------------------AGL-SVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CCC-EEEEEeCCC
Confidence 45679999999999999999986 454 699999874
No 404
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.34 E-value=0.16 Score=50.50 Aligned_cols=100 Identities=22% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcC---CCceEEEEcCC----------------------------------------
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAH---QEAQVDIIDRL---------------------------------------- 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g---~~~~v~lie~~---------------------------------------- 53 (415)
...++|+|||+|++|+.+|+.++... +...|.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~~r~~~~~~~~~~~c~~~~~~~I~~G~GgaG~fs~g~ 95 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIEQRLCPKDEKKLEKCPKCDPCPIVIGFGGAGLFSDGI 95 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchhhhhccccccchhhcCCCCCceeEecccccccccccc
Q ss_pred ----CCCCC-------------------------------------------------------ccccCCCCCCcchHHH
Q 014990 54 ----PTPFG-------------------------------------------------------LVRSGVAPDHPETKIV 74 (415)
Q Consensus 54 ----~~~gg-------------------------------------------------------~~~~~~~~~~~~~~~~ 74 (415)
+..|+ +..+.-+-+-.....+
T Consensus 96 lnl~P~~Gg~~~~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l~~v 175 (486)
T COG2509 96 LNLRPIRGGDVHERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDILPKV 175 (486)
T ss_pred eecccccccchhhhhCChHHHHHHHhccchhheecCCCcCcccCCchhhhhHHHHHHhCCCceeeeccccccCccchHHH
Q ss_pred HHHHHHHhhccCeEEEeceEe---------ceEEEeccc-ccccCEEEEccC
Q 014990 75 INQFSRVVQHERCSFFGNVTL---------GSSVSLSEL-RQLYHVVVLAYG 116 (415)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~v---------~~~v~~~~~-~~~~d~lvlAtG 116 (415)
...+.+.++..+++++.++.| -..+....+ ...+|+||+|+|
T Consensus 176 vkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 176 VKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC
No 405
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=95.33 E-value=0.14 Score=51.17 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=28.1
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
..+|+|||+|++|+-+|..|.+ .|. +|+++.+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--------------------~G~-~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--------------------SDL-RIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--------------------CCC-EEEEEcCC
Confidence 4579999999999999999986 454 78999885
No 406
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.30 E-value=0.079 Score=54.79 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~ 53 (415)
.+..-+|||||||-+|.++|++|++.| .+ .++.|+.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g--~k~avlle~~ 72 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRG--MKGAVLLERS 72 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHcc--ccceEEEeee
Confidence 345678999999999999999999999 87 4444544
No 407
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.14 Score=49.12 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
.-.|+|||+|+.|+-+|..+.+
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r 24 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAAR 24 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHH
Confidence 3579999999999999999986
No 408
>PRK07588 hypothetical protein; Provisional
Probab=95.27 E-value=0.2 Score=49.82 Aligned_cols=34 Identities=24% Similarity=0.195 Sum_probs=28.1
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||||.+|+-+|..|.+ .| -+|+++.|.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--------------------YG-HEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--------------------CC-CceEEEeCCCC
Confidence 369999999999999999986 35 36889988754
No 409
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=95.27 E-value=0.052 Score=60.56 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=30.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||+|+.|+.+|..|.+ .| .+|+++.+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--------------------~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--------------------YG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------cC-CcEEEEecCCC
Confidence 57899999999999999999996 34 48999988753
No 410
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.25 E-value=0.023 Score=56.41 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...++|||||||.||..||...+|.| .+.+|+-.+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~G--a~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLG--ARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcC--CceEEeecc
Confidence 46789999999999999999999999 888888665
No 411
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.25 E-value=0.058 Score=59.63 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=30.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+++|+|||||+.|+.+|..|++ .| .+|+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--------------------~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--------------------AG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecccc
Confidence 56899999999999999999996 34 48999988754
No 412
>PRK06753 hypothetical protein; Provisional
Probab=95.24 E-value=0.22 Score=49.04 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||||.+|+-+|..|++ .| -+|+++.|++..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~--------------------~g-~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE--------------------QG-HEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCCcc
Confidence 69999999999999999986 44 478999888543
No 413
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.24 E-value=0.033 Score=50.27 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=31.2
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
+.++|+|||||..|...+..|.+.| .+|+|+++.
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~g--a~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAG--AQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 5679999999999999999999999 999999854
No 414
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.22 E-value=0.028 Score=56.53 Aligned_cols=43 Identities=23% Similarity=0.365 Sum_probs=38.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCCCCCccc
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~~gg~~~ 61 (415)
++++=|||+|.|+|++|.+|.|.+ |+-+|+|+|+.+.+||.+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCccc
Confidence 467889999999999999999998 7889999999998887653
No 415
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=95.22 E-value=0.08 Score=57.71 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
..+++|+|||+|++|+-+|.+|.+ ....|+++.|++..
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk---------------------~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK---------------------AGHTVTVYERSDRV 1820 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhh---------------------cCcEEEEEEecCCc
Confidence 479999999999999999999996 34689999999654
No 416
>PLN02785 Protein HOTHEAD
Probab=95.21 E-value=0.025 Score=59.37 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=32.5
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+..++++|||||.||..+|.+|.+ + .+|+|+|+++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~--~~VLllE~G~~ 88 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-N--FSVLLLERGGV 88 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-C--CcEEEEecCCC
Confidence 347999999999999999999999 5 89999999864
No 417
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.19 E-value=0.11 Score=51.78 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=30.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
...+|+|||+|.+|+-+|..|.+ .|. +|+++.|++..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~--------------------~g~-~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR--------------------QGI-KVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--------------------CCC-cEEEEeeCccc
Confidence 45789999999999999999986 454 79999988643
No 418
>PRK09126 hypothetical protein; Provisional
Probab=95.16 E-value=0.15 Score=50.64 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=28.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
-+|+|||+|++|+-+|..|.+ .| -+|+++.|...
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--------------------~G-~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--------------------SG-LKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEeCCCc
Confidence 469999999999999999986 45 47999998754
No 419
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.13 E-value=0.04 Score=47.48 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=31.1
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
-+.++|+|||||..|..-+..|.+.+ .+|+||++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~g--a~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTG--AFVTVVSP 44 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcC
Confidence 36889999999999999999999999 99999963
No 420
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.06 E-value=0.3 Score=51.18 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=27.4
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
-.|+|||||..|+++|..+++ .| .+|.++.++
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR--------------------~G-~kV~LiE~~ 36 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAAR--------------------MG-AKTLLLTHN 36 (618)
T ss_pred ceEEEECchHHHHHHHHHHHH--------------------cC-CcEEEEecc
Confidence 469999999999999999996 34 578888876
No 421
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.38 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.7
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
++|+|||+|++|+.+|.+|.+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~ 22 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLK 22 (474)
T ss_pred ceEEEECCchHHHHHHHHHHh
Confidence 579999999999999999997
No 422
>PLN02985 squalene monooxygenase
Probab=95.04 E-value=0.29 Score=50.70 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.|..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~--------------------~G-~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK--------------------DG-RRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH--------------------cC-CeEEEEECcC
Confidence 45589999999999999999986 34 5899998874
No 423
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=94.99 E-value=0.32 Score=48.37 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.7
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeec
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRR 212 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~ 212 (415)
.|+|||+|++|+-+|..|++ .| .+|.++.++
T Consensus 2 DVvIVGaGpAG~~aA~~La~--------------------~G-~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLAR--------------------AG-IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEECC
Confidence 59999999999999999996 34 478898887
No 424
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=94.98 E-value=0.018 Score=58.21 Aligned_cols=30 Identities=33% Similarity=0.532 Sum_probs=28.4
Q ss_pred EECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 24 VVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 24 IIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
|||+|.||++||..+++.| .+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~G--a~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAG--ASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCC--CcEEEEeCCCC
Confidence 7999999999999999999 99999999874
No 425
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=94.94 E-value=0.025 Score=58.82 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.4
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++||||+|.||.-+|.+|++.+ ..+|+|+|+++.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~~ 34 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGGS 34 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCCC
Confidence 6899999999999999999875 469999999864
No 426
>PLN02697 lycopene epsilon cyclase
Probab=94.94 E-value=0.23 Score=51.38 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=19.3
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
-.|+|||+|++|+-+|..|.+
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak 129 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAK 129 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHh
Confidence 479999999999999999986
No 427
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.93 E-value=0.17 Score=53.91 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...++|+|||||+.|+.+|..+.+.+ . +|+|+.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~G--a~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLG--AESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcC--CCeEEEeeecC
Confidence 35789999999999999999999998 5 699998765
No 428
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=94.91 E-value=0.51 Score=48.16 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=35.0
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+.++.+++++.+++++ . +++++.++.... .+++...+.++.||+|+|-
T Consensus 143 ~~gv~i~~~t~v~~l~--~-~~g~v~gv~~~~--------------~~g~~~~i~a~~VIlAtGg 190 (466)
T PRK08274 143 RLGVEIRYDAPVTALE--L-DDGRFVGARAGS--------------AAGGAERIRAKAVVLAAGG 190 (466)
T ss_pred HCCCEEEcCCEEEEEE--e-cCCeEEEEEEEc--------------cCCceEEEECCEEEECCCC
Confidence 5689999999999887 4 456666665532 1344557899999999994
No 429
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.90 E-value=0.1 Score=53.54 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|||+|.+|+++|..|.+ .| .+|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--------------------~G-~~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--------------------LG-ARVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--------------------CC-CEEEEEeCCc
Confidence 57899999999999999988885 45 4788887654
No 430
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=94.87 E-value=0.16 Score=50.75 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=28.4
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|+.|+-+|..|++ .| .+|.++.|....
T Consensus 2 ~VvIVGaGPAG~~aA~~la~--------------------~G-~~V~llE~~~~~ 35 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLAS--------------------AG-IQTFLLERKPDN 35 (398)
T ss_pred eEEEECCcHHHHHHHHHHHh--------------------CC-CcEEEEecCCCC
Confidence 69999999999999999996 45 479999887543
No 431
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.85 E-value=0.55 Score=48.54 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=36.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeec-cCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIG-YKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG-~~p 346 (415)
+.++++++++.+++++ . +++++.++.+... +++..++.++.||+|+| +.+
T Consensus 202 ~~gv~i~~~t~v~~l~--~-~~g~V~Gv~~~~~--------------~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 202 ERKIPLFVNADVTKIT--E-KDGKVTGVKVKIN--------------GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred HcCCeEEeCCeeEEEE--e-cCCEEEEEEEEeC--------------CCeEEEEecCeEEEeCCCccc
Confidence 5689999999999987 4 4567777765431 33445799999999998 544
No 432
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=94.84 E-value=0.17 Score=50.09 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.2
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .+ .+|.++.+++.
T Consensus 1 DviIiGaG~AGl~~A~~la~--------------------~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--------------------PG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--------------------CC-CeEEEEccCCC
Confidence 48999999999999999885 33 48999987753
No 433
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.83 E-value=0.14 Score=57.37 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEec
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLG 96 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 96 (415)
..++|+|||+|+.|+.+|..|++.+ .+ |+|+|..+.. ...+.+.+++.+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G--~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAG--IAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEE
Confidence 4579999999999999999999998 64 7888866432 1123345667788888776542
Q ss_pred e--------EEEec----c-cccccCEEEEccCC
Q 014990 97 S--------SVSLS----E-LRQLYHVVVLAYGA 117 (415)
Q Consensus 97 ~--------~v~~~----~-~~~~~d~lvlAtG~ 117 (415)
. .+... + ....+|.|+++.|.
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 1 12222 1 22468999999998
No 434
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.81 E-value=0.18 Score=50.00 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.8
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+|+|||+|++|.-+|..|.+ .| -+|+++.+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--------------------~G-~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--------------------QG-RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--------------------CC-CcEEEEcCCC
Confidence 469999999999999999986 34 4889998764
No 435
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=94.69 E-value=0.18 Score=49.73 Aligned_cols=33 Identities=36% Similarity=0.439 Sum_probs=28.3
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .| .+|+++.|++.
T Consensus 1 dViIvGaG~aGl~~A~~L~~--------------------~G-~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--------------------SG-LKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--------------------CC-CEEEEEeCCCc
Confidence 48999999999999999996 45 48999999854
No 436
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.69 E-value=0.073 Score=44.44 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=30.3
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
..+|+|+|+|.-|..+|..|++.| -.+++|+|...
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcc
Confidence 578999999999999999999999 23899999873
No 437
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=94.68 E-value=0.041 Score=53.76 Aligned_cols=36 Identities=28% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~ 53 (415)
..++|||+||||.|++.|..|.... ...+|.|+|-.
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 4899999999999999999999544 24689999988
No 438
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=94.62 E-value=0.69 Score=46.77 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=35.9
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
+.|+++++++.+++++ .++++.+.++.+... .++...+.++.||+|+|-..
T Consensus 142 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~~--------------~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLI--QDDQGTVVGVVVKGK--------------GKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HcCCEEEeCCEeeEeE--ECCCCcEEEEEEEeC--------------CCeEEEEecceEEEecCCCC
Confidence 5689999999999987 423466766665431 33444689999999999443
No 439
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.61 E-value=0.039 Score=57.42 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+++||||+|.||-.+|..|.+.+ .+|+|+|.+.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g--~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAG--LSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCC--CeEEEEeCCC
Confidence 46789999999999999999999666 9999999983
No 440
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.57 E-value=0.064 Score=48.26 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
+.++|+|||||-.|...+..|.+.| .+|+|+++
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~g--a~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYG--AHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEcC
Confidence 6789999999999999999999999 99999974
No 441
>PRK04148 hypothetical protein; Provisional
Probab=94.56 E-value=0.066 Score=44.58 Aligned_cols=35 Identities=23% Similarity=0.211 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
+.++|++||.| .|.+.|..|.+.| ++|+.+|-++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G--~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESG--FDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCC--CEEEEEECCHH
Confidence 45789999999 8999999999999 99999998754
No 442
>PRK07190 hypothetical protein; Provisional
Probab=94.54 E-value=0.29 Score=50.28 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=28.2
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
...|+|||+|++|+-+|..|.+ .|. +|.++.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar--------------------~Gi-~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL--------------------CGL-NTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH--------------------cCC-CEEEEeCCC
Confidence 3579999999999999999986 454 688888874
No 443
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.54 E-value=0.19 Score=50.16 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=27.9
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
..|+|||+|.+|+-+|..|.+ .| -+|+++.+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG--------------------SG-LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc--------------------CC-CEEEEEcCCC
Confidence 369999999999999999986 34 4899998875
No 444
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=94.46 E-value=0.058 Score=53.83 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=36.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPF 57 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~g 57 (415)
+.++||+||||..|.+++..|.+..|..+|.|+||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 5789999999999999999999999999999999987644
No 445
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=94.44 E-value=0.22 Score=49.93 Aligned_cols=64 Identities=25% Similarity=0.378 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccCCCCCCCceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCee
Q 014990 259 RRVYELLSKAAASASSQPMLGQRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMV 338 (415)
Q Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~v 338 (415)
..+...+.+... +.++++++++.+++++ . +++++.++...+. .+++...+.++.|
T Consensus 141 ~~~~~~l~~~~~---------~~gv~i~~~~~~~~Li--~-e~g~V~Gv~~~~~-------------~~g~~~~i~A~aV 195 (417)
T PF00890_consen 141 KALIEALAKAAE---------EAGVDIRFNTRVTDLI--T-EDGRVTGVVAENP-------------ADGEFVRIKAKAV 195 (417)
T ss_dssp HHHHHHHHHHHH---------HTTEEEEESEEEEEEE--E-ETTEEEEEEEEET-------------TTCEEEEEEESEE
T ss_pred HHHHHHHHHHHh---------hcCeeeeccceeeeEE--E-eCCceeEEEEEEC-------------CCCeEEEEeeeEE
Confidence 344555555543 5679999999999998 5 5778888887642 1566678999999
Q ss_pred EEeeccCCc
Q 014990 339 LKSIGYKSV 347 (415)
Q Consensus 339 i~atG~~p~ 347 (415)
|+|||-...
T Consensus 196 IlAtGG~~~ 204 (417)
T PF00890_consen 196 ILATGGFGG 204 (417)
T ss_dssp EE----BGG
T ss_pred EeccCcccc
Confidence 999996654
No 446
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=94.34 E-value=0.065 Score=51.02 Aligned_cols=35 Identities=34% Similarity=0.372 Sum_probs=32.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|.|||-+|..|+..| .+|+|+|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG--~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAG--KRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcC--ceEEEEcccc
Confidence 4678999999999999999999999 9999999874
No 447
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=94.32 E-value=0.34 Score=48.02 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=28.5
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.-.|+|||+|++|+-+|..|.+ .| .+|+++.+.+
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~--------------------~G-~~V~liE~~~ 38 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQ--------------------HG-FSVAVLEHAA 38 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhc--------------------CC-CEEEEEcCCC
Confidence 4579999999999999999986 34 4799998864
No 448
>PRK13984 putative oxidoreductase; Provisional
Probab=94.24 E-value=0.12 Score=54.74 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 157 KSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 157 ~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..+++|+|||+|+.|+.+|..|.+ .+ .+|+++.+...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--------------------~G-~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--------------------MG-YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--------------------CC-CeEEEEecCCC
Confidence 368899999999999999999986 34 47999887753
No 449
>PRK06996 hypothetical protein; Provisional
Probab=94.23 E-value=0.53 Score=46.95 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=29.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCc---ceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSI---RKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~l~~r~~ 213 (415)
....|+|||+|++|+-+|..|.+ .|. .+|+++.+.+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~--------------------~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLAR--------------------RSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CCCcCCceEEEecCCC
Confidence 35689999999999999999986 342 4699998864
No 450
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.062 Score=49.23 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=30.5
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
|+++|||+|.-|.+.|..|.+.| ++|++||+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g--~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG--HNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC--CceEEEEcCH
Confidence 57999999999999999999999 9999999554
No 451
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=94.20 E-value=0.095 Score=50.07 Aligned_cols=38 Identities=24% Similarity=0.234 Sum_probs=32.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcC--CCceEEEEcCCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAH--QEAQVDIIDRLPT 55 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g--~~~~v~lie~~~~ 55 (415)
...+|+|||||-.|.|.|..|.++- -+.+|+++|+.+.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 5779999999999999999998654 2389999999864
No 452
>PRK08013 oxidoreductase; Provisional
Probab=94.19 E-value=0.38 Score=47.99 Aligned_cols=35 Identities=37% Similarity=0.388 Sum_probs=29.3
Q ss_pred CCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 159 TDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...|+|||+|++|+-+|..|.+ .| -+|+++.|.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--------------------~G-~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--------------------SG-LRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--------------------CC-CEEEEEeCCCC
Confidence 3579999999999999999986 45 47999998754
No 453
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=94.18 E-value=0.043 Score=51.80 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=36.0
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
...+++||||||..|++.|..|.-+.|+.+|.++|+...+
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 3578999999999999999999999888999999998654
No 454
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.16 E-value=0.081 Score=46.66 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=28.1
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+|.|||+|..|...|..+++.| ++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G--~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG--YEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT--SEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC--CcEEEEECCh
Confidence 5899999999999999999999 9999999764
No 455
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=94.15 E-value=0.55 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.5
Q ss_pred CeEEEEcCChhHHHHHHHHhc
Q 014990 160 DTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~ 180 (415)
-.|+|||||.+|+-+|.+|++
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~ 27 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCAL 27 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHH
Confidence 569999999999999999986
No 456
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.08 E-value=0.21 Score=46.87 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| -.+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCE
Confidence 5778999999999999999999998 34899999763
No 457
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.03 E-value=0.21 Score=44.96 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=31.6
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...+|+|||.|-.|..+|..|++.| . +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G--v~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG--VGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC--CCeEEEecCC
Confidence 6788999999999999999999999 5 89999986
No 458
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.95 E-value=0.17 Score=52.99 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCCCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 156 LKSTDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 156 ~~~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+++|+|||+|++|+-+|..|.+ .|. +|+++.+.+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~--------------------~G~-~V~v~e~~~~ 171 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRR--------------------MGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH--------------------CCC-eEEEEecCCC
Confidence 3478999999999999999999886 465 6999987754
No 459
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.94 E-value=0.74 Score=45.42 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=28.1
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.|+|||+|++|+-+|..|.+ .|.-+|+++.|...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--------------------~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--------------------LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--------------------CCCceEEEEeCCCc
Confidence 48999999999999999996 45148999988743
No 460
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=93.93 E-value=0.23 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=28.6
Q ss_pred CeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 160 DTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 160 k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
.+|+|||+|.+|+-+|..|.+ .| -+|+++.+.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--------------------~G-~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--------------------AG-IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--------------------CC-CCEEEEECCCC
Confidence 579999999999999999986 45 37899988763
No 461
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.91 E-value=0.12 Score=43.34 Aligned_cols=34 Identities=29% Similarity=0.360 Sum_probs=30.8
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCce-EEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQ-VDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~-v~lie~~ 53 (415)
..++|+|||+|-+|-+++..|...| .+ |+|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g--~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALG--AKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTT--SSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC--CCEEEEEECC
Confidence 6889999999999999999999998 65 9999864
No 462
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.90 E-value=0.061 Score=51.10 Aligned_cols=35 Identities=26% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
...|-|||||.||..||+.++++| +.|.|+|-.+.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~G--v~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRG--VPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcC--CcEEEEEcccc
Confidence 456899999999999999999999 99999998754
No 463
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.84 E-value=0.36 Score=49.40 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=37.6
Q ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCC
Q 014990 15 LSSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGV 64 (415)
Q Consensus 15 ~~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~ 64 (415)
+.....+++|||+|.+|-..+..+++...-.-|.++|..+..-|.--.|+
T Consensus 112 ~~~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 112 QKDNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cccCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 44567899999999999999999998875345666788876555544443
No 464
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.78 E-value=0.27 Score=47.98 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=31.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| . +++|+|+..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG--vg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG--IGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCc
Confidence 5778999999999999999999999 6 899999874
No 465
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.66 E-value=0.75 Score=46.76 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
..-.|+|||+|+.|+-+|..|++ .| .+|.++.|+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~--------------------~G-~~VlllEr~~~ 73 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK--------------------GG-IETFLIERKLD 73 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--------------------CC-CcEEEEecCCC
Confidence 34589999999999999999986 45 47999988753
No 466
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.58 E-value=0.33 Score=40.87 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=29.2
Q ss_pred eEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCCC
Q 014990 21 RVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRLP 54 (415)
Q Consensus 21 ~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~~ 54 (415)
+|+|||.|--|...|..|.+.| . +++|+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~G--v~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSG--VGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCC
Confidence 5899999999999999999999 5 799999773
No 467
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=93.54 E-value=0.97 Score=45.26 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=29.0
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCcc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGPV 215 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~~ 215 (415)
+|+|||+|..|+-+|..|.+ .|.-+|+++.|++..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~--------------------~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK--------------------HSHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------cCCCCEEEEecCCcC
Confidence 69999999999999999986 343479999988543
No 468
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.52 E-value=0.16 Score=49.70 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=58.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC--CceEE-EEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceE
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQ--EAQVD-IIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVT 94 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~--~~~v~-lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (415)
.++.|-|||+|+-|-.+|..|.|+.- +.+|. +|+..-..+ -+.|. -+.+.-.+.++..|+.++.+..
T Consensus 346 ek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~-----kiLPe-----yls~wt~ekir~~GV~V~pna~ 415 (659)
T KOG1346|consen 346 EKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNME-----KILPE-----YLSQWTIEKIRKGGVDVRPNAK 415 (659)
T ss_pred hcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChh-----hhhHH-----HHHHHHHHHHHhcCceeccchh
Confidence 46789999999999999999998751 12332 333221110 01122 2222334556777899888877
Q ss_pred ece--------EEEeccccc-ccCEEEEccCCCCCCC
Q 014990 95 LGS--------SVSLSELRQ-LYHVVVLAYGAESDRA 122 (415)
Q Consensus 95 v~~--------~v~~~~~~~-~~d~lvlAtG~~~~~~ 122 (415)
+.. .+.+.++.. ..|.||+|+|. .|+.
T Consensus 416 v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~-ePN~ 451 (659)
T KOG1346|consen 416 VESVRKCCKNLVLKLSDGSELRTDLVVVAVGE-EPNS 451 (659)
T ss_pred hhhhhhhccceEEEecCCCeeeeeeEEEEecC-CCch
Confidence 632 244555543 78999999998 4443
No 469
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.47 E-value=0.14 Score=44.59 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
++.+|+|+|+|.+|..|+..|...| .+++++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCC
Confidence 5689999999999999999999999 999999976
No 470
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.38 E-value=1.3 Score=47.12 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=36.4
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeecc
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGY 344 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~ 344 (415)
+.+|++++++.+++++ . +++.+.++...+. .+|....+.++.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li--~-d~g~V~GV~~~~~-------------~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLV--V-VDGRARGIVARNL-------------VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCEEEECCCC
Confidence 4579999999999987 4 4567777765431 1344457999999999995
No 471
>PRK07538 hypothetical protein; Provisional
Probab=93.35 E-value=0.27 Score=49.34 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=28.0
Q ss_pred eEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 161 TAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
+|+|||+|..|+-+|..|.+ .|. +|+++.|++.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~--------------------~G~-~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ--------------------RGI-EVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh--------------------CCC-cEEEEEcCCc
Confidence 69999999999999999986 454 7999988753
No 472
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=93.24 E-value=0.76 Score=45.94 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.6
Q ss_pred EEEcCChhHHHHHHHHhc
Q 014990 163 VILGQGNVALDVARILLR 180 (415)
Q Consensus 163 ~VVG~G~sg~e~a~~L~~ 180 (415)
+|||+|++|+-+|..+++
T Consensus 1 vIIGgG~aGl~aAi~aa~ 18 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR 18 (400)
T ss_pred CEEEEeHHHHHHHHHHHh
Confidence 589999999999999986
No 473
>PRK07121 hypothetical protein; Validated
Probab=93.23 E-value=1.3 Score=45.67 Aligned_cols=50 Identities=16% Similarity=0.231 Sum_probs=35.9
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEec-CeeEEeeccCC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDC-GMVLKSIGYKS 346 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~-D~vi~atG~~p 346 (415)
+.++.+++++.+++++ .++++++.++.... .++...+.+ +.||+|||-..
T Consensus 189 ~~gv~i~~~~~v~~l~--~~~~g~v~Gv~~~~---------------~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 189 ALGVQIRYDTRATRLI--VDDDGRVVGVEARR---------------YGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hCCCEEEeCCEEEEEE--ECCCCCEEEEEEEe---------------CCcEEEEEeCCEEEECCCCcC
Confidence 5689999999999887 41246777776632 344457888 99999999543
No 474
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.16 E-value=0.38 Score=44.15 Aligned_cols=35 Identities=31% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|--|..+|..|++.| -.+++|+|..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 5778999999999999999999999 3489999876
No 475
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.13 E-value=0.16 Score=49.00 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 17 SNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 17 ~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
+..++|+|||+|.-|.+.|..|++.| ++|+++.+.+
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g--~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG--FDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC--CeEEEEEeCC
Confidence 46689999999999999999999999 9999998753
No 476
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.11 E-value=1.4 Score=45.40 Aligned_cols=48 Identities=17% Similarity=0.172 Sum_probs=34.3
Q ss_pred eeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccCC
Q 014990 281 RELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYKS 346 (415)
Q Consensus 281 ~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~p 346 (415)
.+|++++++.+++++ . +++.+.++...+ .+....+.++.||+|||-..
T Consensus 142 ~gi~i~~~~~v~~l~--~-~~g~v~Gv~~~~---------------~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 142 PNIRIIEGENALDLL--I-ETGRVVGVWVWN---------------RETVETCHADAVVLATGGAG 189 (488)
T ss_pred CCcEEEECeEeeeee--c-cCCEEEEEEEEE---------------CCcEEEEEcCEEEECCCccc
Confidence 479999999999987 4 356666665533 12334789999999999643
No 477
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=93.10 E-value=1.4 Score=46.22 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.5
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
.|+|||+|.+|+++|..+++
T Consensus 2 DViVIGaG~AGl~aA~ala~ 21 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAAR 21 (617)
T ss_pred eEEEECccHHHHHHHHHHHH
Confidence 48999999999999999986
No 478
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=93.04 E-value=0.12 Score=53.58 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTP 56 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~ 56 (415)
....++.+|||||.||...|.+|.+. |+.+|.|+|++..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 34689999999999999999999987 47899999998543
No 479
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=92.84 E-value=1.3 Score=43.79 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecCc
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRGP 214 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~~ 214 (415)
...+|+|||+|.+|+-+|..|.+ .| .+|+++.+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--------------------~G-~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--------------------AG-ASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--------------------CC-CeEEEEeCCCC
Confidence 34579999999999999999986 45 47999988753
No 480
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.83 E-value=0.53 Score=43.56 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
...+|+|||+|-.|..+|..|++.| --+++|+|...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCc
Confidence 5678999999999999999999999 34899998763
No 481
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=0.65 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
.-.|+|||||..|||+|...++
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR 25 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR 25 (621)
T ss_pred CCceEEECCCccchHHHHhhhc
Confidence 3579999999999999999986
No 482
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.73 E-value=0.22 Score=47.11 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
.+-+|+|||||.+|..+|.-+.-.| .+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccC--CeeEEEecC
Confidence 3557999999999999999999999 999999988
No 483
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=92.65 E-value=0.58 Score=41.94 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=30.9
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|--|..+|..|.+.| -.+++|+|..
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~G-Vg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAG-IDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEECC
Confidence 4678999999999999999999999 2469999876
No 484
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=92.60 E-value=0.12 Score=51.13 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCCCCCccc
Q 014990 29 PAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVR 61 (415)
Q Consensus 29 ~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~ 61 (415)
.|||+||.+|++.| .+|+|+|+++.+||...
T Consensus 1 iaGL~aA~~L~~~G--~~v~vlEa~~r~GGr~~ 31 (450)
T PF01593_consen 1 IAGLAAAYYLAKAG--YDVTVLEASDRVGGRIR 31 (450)
T ss_dssp HHHHHHHHHHHHTT--TEEEEEESSSSSBTTS-
T ss_pred ChHHHHHHHHHhCC--CCEEEEEcCCCCCcceE
Confidence 48999999999999 99999999999999754
No 485
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.60 E-value=0.064 Score=54.18 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=36.3
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCcc
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLV 60 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~ 60 (415)
...+|+|||||..|.-||.-..-+| .++.|+|+++...|..
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRG--LktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRG--LKTALVEAGDFASGTS 106 (680)
T ss_pred CcccEEEECCCccCcceeehhhccc--ceeEEEecccccCCcc
Confidence 4589999999999999999999999 9999999998655543
No 486
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.55 E-value=0.18 Score=48.55 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
.++|+|||+|.-|...|.+|.+.| .+|+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G--~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAG--LPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCC--CCeEEEEech
Confidence 568999999999999999999998 9999999753
No 487
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=92.53 E-value=0.21 Score=42.29 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 22 VCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 22 VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
|+|+|+|..|...|..|.+.+ .+|+++.+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g--~~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAG--HDVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTT--CEEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCC--CceEEEEc
Confidence 789999999999999999988 99999974
No 488
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.48 E-value=0.18 Score=48.55 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=31.3
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPT 55 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~ 55 (415)
++|.|||+|.-|.+.|..|++.| ++|+++|+.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G--~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAG--HEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCC--CeeEEEeCCHH
Confidence 47999999999999999999999 99999998753
No 489
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.47 E-value=0.58 Score=43.42 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
...+|+|||.|.-|..+|..|++.| -.+++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCC
Confidence 5789999999999999999999999 3489999876
No 490
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.44 E-value=2.5 Score=41.84 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred CCeEEEEcCChhHHHHHHHHhc
Q 014990 159 TDTAVILGQGNVALDVARILLR 180 (415)
Q Consensus 159 ~k~V~VVG~G~sg~e~a~~L~~ 180 (415)
..+|+|||+|++|+-+|..|.+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~ 24 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSR 24 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhh
Confidence 3579999999999999999986
No 491
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.33 E-value=0.34 Score=43.52 Aligned_cols=36 Identities=31% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCC
Q 014990 16 SSNPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRL 53 (415)
Q Consensus 16 ~~~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~ 53 (415)
....++|+|+|.|-.|..+|..|.+.| .+|+++|+.
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G--~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEG--AKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 446789999999999999999999999 999998854
No 492
>PRK06175 L-aspartate oxidase; Provisional
Probab=92.32 E-value=1.3 Score=44.79 Aligned_cols=48 Identities=6% Similarity=0.033 Sum_probs=33.7
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
..+|++++++.+++++ . +++.+.++.... ++....+.++.||+|||-.
T Consensus 141 ~~gV~i~~~t~v~~Li--~-~~~~v~Gv~~~~---------------~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 141 RKNITIIENCYLVDII--E-NDNTCIGAICLK---------------DNKQINIYSKVTILATGGI 188 (433)
T ss_pred cCCCEEEECcEeeeeE--e-cCCEEEEEEEEE---------------CCcEEEEEcCeEEEccCcc
Confidence 3489999999999986 4 356565554322 2333478999999999953
No 493
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.19 E-value=1.6 Score=43.14 Aligned_cols=20 Identities=30% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEcCChhHHHHHHHHhc
Q 014990 161 TAVILGQGNVALDVARILLR 180 (415)
Q Consensus 161 ~V~VVG~G~sg~e~a~~L~~ 180 (415)
+|+|||+|.+|+-+|..|.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~ 22 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQ 22 (374)
T ss_pred cEEEECCCHHHHHHHHHHHc
Confidence 59999999999999999986
No 494
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.15 E-value=0.27 Score=41.09 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=32.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHhcCcccccccCchhHHHHHhhcCCcceEEEEeecC
Q 014990 158 STDTAVILGQGNVALDVARILLRPTEELATTDIASYAWTALEGSSIRKVYLVGRRG 213 (415)
Q Consensus 158 ~~k~V~VVG~G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~r~~ 213 (415)
.+++|+|||+|.+|-.++..|.. .+.++++++.|+.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--------------------~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--------------------LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--------------------TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--------------------cCCCEEEEEECCH
Confidence 68999999999999999999986 6888999999984
No 495
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=92.06 E-value=1.7 Score=45.53 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=35.6
Q ss_pred ceeEEEEeccccccccccCCCCCCeeeEEEeeeeecCCCCCcceeccCCceEEEecCeeEEeeccC
Q 014990 280 QRELHFVFFRKPDSFLESNERSGHVSGVHFEKTALKGGGPGKQYAVGTGEFEDLDCGMVLKSIGYK 345 (415)
Q Consensus 280 ~~~v~~~~~~~~~~v~~~~~~~~~v~~v~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~atG~~ 345 (415)
+.|+++++++.+++++ . +++.+.++...+. .+++...+.++.||+|||-.
T Consensus 141 ~~gv~i~~~~~v~~L~--~-~~g~v~Gv~~~~~-------------~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 141 KLGVSFFNEYFALDLI--H-DDGRVRGVVAYDL-------------KTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HcCCEEEeccEEEEEE--E-eCCEEEEEEEEEC-------------CCCcEEEEECCeEEECCCcc
Confidence 4589999999998887 4 4666766654321 13444578999999999953
No 496
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.14 Score=48.83 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=58.1
Q ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEeceE
Q 014990 19 PLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGSS 98 (415)
Q Consensus 19 ~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 98 (415)
+-+-+|||||+.+|.||-.|.-.| ++|++.=|+-.+- ++ ..+..+.+.+.++..+++|.......+.
T Consensus 198 PGkTLvVGa~YVaLECAgFL~gfg--~~vtVmVRSI~Lr---------GF--Dqdmae~v~~~m~~~Gikf~~~~vp~~V 264 (503)
T KOG4716|consen 198 PGKTLVVGAGYVALECAGFLKGFG--YDVTVMVRSILLR---------GF--DQDMAELVAEHMEERGIKFLRKTVPERV 264 (503)
T ss_pred CCceEEEccceeeeehhhhHhhcC--CCcEEEEEEeecc---------cc--cHHHHHHHHHHHHHhCCceeecccceee
Confidence 446789999999999999999999 8888876554322 21 1234556677778888888765432110
Q ss_pred ---------------EEecccccccCEEEEccCC
Q 014990 99 ---------------VSLSELRQLYHVVVLAYGA 117 (415)
Q Consensus 99 ---------------v~~~~~~~~~d~lvlAtG~ 117 (415)
.+.+.....||.|++|.|.
T Consensus 265 eq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR 298 (503)
T KOG4716|consen 265 EQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGR 298 (503)
T ss_pred eeccCCcEEEEeecccccccccchhhhhhhhhcc
Confidence 0111223469999999996
No 497
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=92.01 E-value=0.61 Score=45.52 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.5
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCc-eEEEEcCC
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEA-QVDIIDRL 53 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~-~v~lie~~ 53 (415)
...+|+|||+|--|-.+|..|++.| . +++|+|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG--vg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG--VGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC--CCeEEEEeCC
Confidence 5778999999999999999999999 6 99999986
No 498
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=91.81 E-value=0.37 Score=40.60 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=30.4
Q ss_pred CeEEEECC-CHHHHHHHHHHHHcCCCceEEEEcCCC
Q 014990 20 LRVCVVGS-GPAGFYTAEKTLKAHQEAQVDIIDRLP 54 (415)
Q Consensus 20 ~~VvIIGg-G~AGl~aA~~L~~~g~~~~v~lie~~~ 54 (415)
++|+|||+ |.-|.++|..|...+-..++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 58999999 999999999999998555799999654
No 499
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.80 E-value=0.46 Score=50.05 Aligned_cols=93 Identities=16% Similarity=0.182 Sum_probs=62.1
Q ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCceEEEEcCCCCCCCccccCCCCCCcchHHHHHHHHHHhhccCeEEEeceEece
Q 014990 18 NPLRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDRLPTPFGLVRSGVAPDHPETKIVINQFSRVVQHERCSFFGNVTLGS 97 (415)
Q Consensus 18 ~~~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 97 (415)
...+-+|||||-=|+.+|..|...| .+++++.-.+.+ +. ......--..++..+++.++++..+..+..
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~G--m~~~Vvh~~~~l---Me------rQLD~~ag~lL~~~le~~Gi~~~l~~~t~e 212 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLG--MEVTVVHIAPTL---ME------RQLDRTAGRLLRRKLEDLGIKVLLEKNTEE 212 (793)
T ss_pred ccCCcEEEccchhhhHHHHHHHhCC--CceEEEeecchH---HH------HhhhhHHHHHHHHHHHhhcceeecccchhh
Confidence 4455799999999999999999999 999998733321 11 111122233456677788888887655421
Q ss_pred --------EEEecccc-cccCEEEEccCCCCCCC
Q 014990 98 --------SVSLSELR-QLYHVVVLAYGAESDRA 122 (415)
Q Consensus 98 --------~v~~~~~~-~~~d~lvlAtG~~~~~~ 122 (415)
.+..+++. ..+|.||.|+|. .|+.
T Consensus 213 i~g~~~~~~vr~~DG~~i~ad~VV~a~GI-rPn~ 245 (793)
T COG1251 213 IVGEDKVEGVRFADGTEIPADLVVMAVGI-RPND 245 (793)
T ss_pred hhcCcceeeEeecCCCcccceeEEEeccc-cccc
Confidence 23344444 379999999998 4443
No 500
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.79 E-value=0.23 Score=47.53 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=29.0
Q ss_pred CeEEEECCCHHHHHHHHHHHHcCCCceEEEEcC
Q 014990 20 LRVCVVGSGPAGFYTAEKTLKAHQEAQVDIIDR 52 (415)
Q Consensus 20 ~~VvIIGgG~AGl~aA~~L~~~g~~~~v~lie~ 52 (415)
++|+|||+|..|...|..|++.| ++|+++++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g--~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG--RDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CceEEEec
Confidence 47999999999999999999998 99999986
Done!