BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014993
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 499 bits (1286), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/382 (62%), Positives = 292/382 (76%), Gaps = 7/382 (1%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
+ Q Q ++++ +F +E++AP+A ID+SN F WK +GN + GITAP +
Sbjct: 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GA
Sbjct: 73 GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 132
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKG 209
LAMSEPNAGSDVV MK KA++ YI+NGNK W TNGP A L+VYAKTD+ A S+G
Sbjct: 133 LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 192
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
ITAFI+EKGMPGFST++KLDKLGMRGS+TCEL+FE+C +P N+LG E K GVYV+
Sbjct: 193 ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENK-----GVYVL 247
Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
MSGLDLERLVLA GPLG+MQA LD +PY+ RE FG+ +G FQ +QGK ADMYT L +
Sbjct: 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMAC 307
Query: 330 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389
R YVY+VA+ CD G KDCAGVIL +AE ATQV L IQC GGNGY+N++ GR LRD
Sbjct: 308 RQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRD 367
Query: 390 AKLYEIGAGTSEIRRMIIGRAL 411
AKLYEIGAGTSE+RR++IGRA
Sbjct: 368 AKLYEIGAGTSEVRRLVIGRAF 389
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 210/385 (54%), Gaps = 7/385 (1%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T +++ FA + + P AA +D+ + FP + K MG L + P+E
Sbjct: 7 SVELPETHQMLRQTCRDFAEKELVPIAAQLDKEHLFP--TSQVKKMGELGLLAMDVPEEL 64
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IA+EEISR S G+ +++L + +++ GS QK +++ +G+
Sbjct: 65 SGAGLDYLAYSIALEEISRGCASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDK 124
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+G A+SEP GSD A +++NG K W TN A VV+A TD +K
Sbjct: 125 IGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNK 184
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268
GI+AF++ PG + +K DKLG+R S T L+FE+C +P EN+LG+ G G +
Sbjct: 185 GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG-----MGFKI 239
Query: 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 328
M LD+ R+ +A+ LGI QA LD + Y R FG PL + Q IQ K ADM AL+S
Sbjct: 240 AMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALES 299
Query: 329 SRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388
+R + A DN K K+ A L A+E AT ++ QAIQ LGG GYV E R R
Sbjct: 300 ARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERYYR 359
Query: 389 DAKLYEIGAGTSEIRRMIIGRALLK 413
DA++ EI GTSEI+R++I LL+
Sbjct: 360 DARITEIYEGTSEIQRLVIAGHLLR 384
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 250 bits (639), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 209/386 (54%), Gaps = 9/386 (2%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ +T ++ FA + + P AA +D+ + FP K MG L + P+E
Sbjct: 3 SVELPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFP--AAQVKKMGGLGLLAMDVPEEL 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ IAMEEISR S G+ +++L + +++ GS QK ++ SG+
Sbjct: 61 GGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDK 120
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G A+SEP GSD G R +G +++NG K W TN A VV+A TD +
Sbjct: 121 IGCFALSEPGNGSDA-GAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQN 179
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267
K I+AF++ PG + +K DKLG+RGS T L+FE+C +P +++LG+ G G
Sbjct: 180 KSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPG-----MGFK 234
Query: 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 327
+ M LD+ R+ +A+ LGI Q LD + Y R FG PL + Q IQ K ADM AL+
Sbjct: 235 IAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALE 294
Query: 328 SSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 387
S+R + A DN K K+ A L A+E AT ++ QAIQ LGG GYV E R
Sbjct: 295 SARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAISHQAIQILGGMGYVTEMPAERHY 354
Query: 388 RDAKLYEIGAGTSEIRRMIIGRALLK 413
RDA++ EI GTSEI+R++I LL+
Sbjct: 355 RDARITEIYEGTSEIQRLVIAGHLLR 380
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/317 (41%), Positives = 195/317 (61%), Gaps = 6/317 (1%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ +A+EE+++ V ++ A +LC N + + G+ AQK+K+L L+ G +GA ++EP
Sbjct: 72 YILAVEELAKYDAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEP 131
Query: 158 NAGSDVVGMKCKADRVDGG-YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
NAG+D G + A + D G Y +NG+K++ TNG A +V+A TD G+ GITAFI+E
Sbjct: 132 NAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILE 191
Query: 217 KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLE 276
G PGF+ +K DK+G+ S T ELVF++ VP EN+LG+EGKG + M LD
Sbjct: 192 DGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFK-----IAMMTLDGG 246
Query: 277 RLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSV 336
R+ +AA LGI +A L + Y +QR QFG+PL +FQ I K ADM ++++R+ VY
Sbjct: 247 RIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKA 306
Query: 337 ARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIG 396
A GK D A A++ A +VT +A+Q GG GY EY R +RDAK+ +I
Sbjct: 307 ACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIY 366
Query: 397 AGTSEIRRMIIGRALLK 413
GT+E++ M+ G ALL+
Sbjct: 367 EGTNEVQLMVTGGALLR 383
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/376 (37%), Positives = 209/376 (55%), Gaps = 18/376 (4%)
Query: 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLW---KLMGNFNLHGITAPQEXXXXXXXXXX 97
++V + ARE + P A D+ +P W K + L G+T P+E
Sbjct: 12 DAVRRVAREVLYPLAPEYDRKAEYP-----WPQLKALAELGLLGMTTPEEWGGVGLDSVT 66
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+A+EE++ A SV + S L L+R GS AQK +YL L GE +GA ++EP
Sbjct: 67 WALALEELAAADPSVAVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEP 126
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
AGSD ++ +A RV GG+++NG K W T+ A VV A+T+ KGI+AF++EK
Sbjct: 127 QAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTE-----KGISAFLVEK 181
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLER 277
G PG S + +K+G+ + T E+ E FVP EN+LG+EG+G ++GLD R
Sbjct: 182 GTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLA-----YALAGLDSGR 236
Query: 278 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 337
+ +AA +GI + ++ Y +REQFG+ L E Q I K ADM+ + ++R+ V A
Sbjct: 237 VGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAA 296
Query: 338 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 397
R D G+ + + L A+ A +VT +A+Q LGG GY +Y R RDAK+ EI
Sbjct: 297 RKKDRGERFTLEASAAKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYE 356
Query: 398 GTSEIRRMIIGRALLK 413
GTSEI+R++I R L +
Sbjct: 357 GTSEIQRLVIARELYR 372
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 209/384 (54%), Gaps = 15/384 (3%)
Query: 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA---PQEXXX 90
+ + +E++ A + IAP AA +D+ FP++ + N G +A P+E
Sbjct: 21 EEHIALREAIRALAEKEIAPYAAEVDEKARFPEEA-----LAALNSSGFSAIHVPEEYGG 75
Query: 91 XXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVG 150
CI +EE++R S L A + L L+ GS K + LP + SGE +
Sbjct: 76 QGADSVATCIVIEEVARVDCSASL-IPAVNKLGTMGLILRGSEELKKQVLPAVASGEAMA 134
Query: 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210
+ A+SE AGSD M+ +A +I+NG+K W TNG + V A TD G+ GI
Sbjct: 135 SYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGI 194
Query: 211 TAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMM 270
+AF++ K GF+ K KLG++GS T EL FENC +P + ++G+ G G + +
Sbjct: 195 SAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKT-----AL 249
Query: 271 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSR 330
+ LD R + A +GI Q LD + Y ++R+QFGRP+ + Q +Q ADM ++++R
Sbjct: 250 ATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAAR 309
Query: 331 SYVYSVARDCDNGKVDPKDCAGVILC-AAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389
VYS A + G+ D + C A++ A +VT A+Q GG GY ++ R++RD
Sbjct: 310 LMVYSAAARAERGEGDLGFISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRD 369
Query: 390 AKLYEIGAGTSEIRRMIIGRALLK 413
AK+ +I GT++I+R+++ RALL+
Sbjct: 370 AKITQIYEGTNQIQRVVMSRALLR 393
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 228 bits (582), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 207/383 (54%), Gaps = 14/383 (3%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFN--LHGITAPQEXX 89
F D ++ K SV +FA+E IAP + +D+++ + V + G F L GI E
Sbjct: 29 FTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEKSV----IQGLFQQGLMGIEVDPEYG 84
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVR-HGSPAQKDKYLPKLISGEH 148
+ +EE+++ SV + + N IN L+R HG+ QK YLP+L + E
Sbjct: 85 GTGASFLSTVLVIEELAKVDASVAV-FCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EK 142
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
VG+ +SE AGSD +K +AD+ Y++NG+KMW ++ A +V A D G K
Sbjct: 143 VGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYK 202
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268
GIT+F++++ PG + +KLG+R S TC L FEN VP N+LGQ G G
Sbjct: 203 GITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYK-----Y 257
Query: 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 328
+ L+ R+ +AA LG+ Q C D +PY+++R QFG+ L +FQ +Q + A + T L++
Sbjct: 258 AIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEA 317
Query: 329 SRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388
+R Y+ AR + GK K+ + A+E A Q T + I+ +GG GY +Y + R
Sbjct: 318 ARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFR 377
Query: 389 DAKLYEIGAGTSEIRRMIIGRAL 411
DAK+ I G S I+ I + +
Sbjct: 378 DAKIGTIYEGASNIQLNTIAKHI 400
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 199/384 (51%), Gaps = 14/384 (3%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGI---TAPQEX 88
+ Q Q + +FA+E I P A D+ P W ++ + G+ P+E
Sbjct: 5 LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVP-----WPVIEKLHEVGLLNAIIPEEY 59
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
I EE++ A + + S+L I ++ G+ QK+++L L
Sbjct: 60 GGMGLKMLDEVIVGEELAYACMGI-YTIPMASDLGITPVLLAGTEEQKERFLRPLTEKPA 118
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+ A A+SEP GSD +K +A R Y++NG KMW +NG A+ +VV+A + + K
Sbjct: 119 LAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHK 178
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268
G+ A ++E+G PGF + K+G R S T ELVFE+ VP EN LG+EG+G +
Sbjct: 179 GVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFK-----I 233
Query: 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 328
M L+ R+ +AAG +G+ + LD Y ++RE FG P+ FQ IQ K DM +++
Sbjct: 234 AMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIET 293
Query: 329 SRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388
+R Y Y A D G A A+E A + QAIQ GG GYV E+ +LLR
Sbjct: 294 ARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLR 353
Query: 389 DAKLYEIGAGTSEIRRMIIGRALL 412
D KL +I GT+EI+R+II R +L
Sbjct: 354 DVKLNQIYEGTNEIQRLIIARHIL 377
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 224 bits (572), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 209/373 (56%), Gaps = 11/373 (2%)
Query: 45 QFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEE 104
+F + +AP AA D++ +FP D L + + F + G P+ +E
Sbjct: 20 EFLKAEVAPGAAERDRTGAFPWD--LVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEA 77
Query: 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
I+ G++ L+ +H++L ++ GS AQK+ +LPKL SGE +GA ++EP +GSD
Sbjct: 78 IAYYDGALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAA 137
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS----KGITAFIIEKGMP 220
+K KA++V+GG+ +NG K + T G VA VV A+TD +GI+AF +
Sbjct: 138 ALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFRPER 197
Query: 221 GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVL 280
G +K +KLG+ SDT +L+ E+ FVP E +LG+ GKG Y ++ LD R+ +
Sbjct: 198 GLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKG-----FYDVLRVLDGGRIGI 252
Query: 281 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 340
AA +G+ QA LD L Y + RE FGRP+ EF+ + K A+ T L+++R A
Sbjct: 253 AAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELK 312
Query: 341 DNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 400
D G+ + A L A+E A + +AIQ LGG GYV +Y R RDA+L IG GTS
Sbjct: 313 DAGRPFTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTS 372
Query: 401 EIRRMIIGRALLK 413
EI +++I R LL+
Sbjct: 373 EILKLVIARRLLE 385
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 214 bits (544), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 131/373 (35%), Positives = 193/373 (51%), Gaps = 11/373 (2%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX--XXXXXXXX 96
++ V F + I P A D N FP + + + MG G P+E
Sbjct: 12 LQKEVRNFVNKKIVPFADQWDNENHFPYEEAV-RPMGELGFFGTVIPEEYGGEGMDQGWL 70
Query: 97 XHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSE 156
I EEI+R S ++ + C ++ +GS A K KY+PKL S E +G ++E
Sbjct: 71 AAMIVTEEIARGSSALRVQLNMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITE 130
Query: 157 PNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIE 216
P+AGSDV+ M A+ +++NG+K W +N A L+ YA TD AGS+G++AF+IE
Sbjct: 131 PDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIE 190
Query: 217 -KGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDL 275
+ PG T+ L+KLG S T EL +N VP EN+LG+ G G ++ L+
Sbjct: 191 PRNFPGIKTSN-LEKLGSHASPTGELFLDNVKVPKENILGKPGDGAR-----IVFGSLNH 244
Query: 276 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS 335
RL AAG +G+ QACLD + Y +R QFG+P+G+FQ Q A M ++++R Y
Sbjct: 245 TRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYK 304
Query: 336 VARDCDNGKVDPK-DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 394
A D G+++ D A A E ++ A++ LG GY EY R RDA Y
Sbjct: 305 AAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYY 364
Query: 395 IGAGTSEIRRMII 407
+ G++ I +MII
Sbjct: 365 MVEGSANICKMII 377
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 199/387 (51%), Gaps = 17/387 (4%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 SFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 322
V M D ER V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M
Sbjct: 247 -----VAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEM 301
Query: 323 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 382
++ +R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY
Sbjct: 302 AMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYP 361
Query: 383 TGRLLRDAKLYEIGAGTSEIRRMIIGR 409
+L+RDAK+Y+I GTS+I+R+I+ R
Sbjct: 362 VEKLMRDAKIYQIYGGTSQIQRLIVAR 388
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 13/388 (3%)
Query: 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP 85
S S + Q +F+ + +FARE I P AA D++ +P V L K L P
Sbjct: 10 SGFSFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIP 67
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLI 144
+ C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 68 ESFGGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMT 125
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 126 EEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPD 185
Query: 205 ---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G
Sbjct: 186 PKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGF 245
Query: 262 NSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTAD 321
+ M D R +AAG +G+ Q LD Y +R+ FG+ L E Q I AD
Sbjct: 246 K-----IAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLAD 300
Query: 322 MYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEY 381
M ++ +R A + D+G+ + + AA+ A Q+ A+Q GGNG+ EY
Sbjct: 301 MAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEY 360
Query: 382 ATGRLLRDAKLYEIGAGTSEIRRMIIGR 409
+L+RDAK+Y+I GT++I+R+II R
Sbjct: 361 PVEKLMRDAKIYQIYEGTAQIQRIIIAR 388
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 194/385 (50%), Gaps = 13/385 (3%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S + Q +F+ + +FARE I P AA D++ +P V L K L P+
Sbjct: 3 SFELTEQQKEFQATARKFAREEIIPVAAEYDRTGEYP--VPLLKRAWELGLMNTHIPESF 60
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGE 147
C+ EE+ A G G+ +N L L+ G+ Q+ KYL ++
Sbjct: 61 GGLGLGIIDSCLITEEL--AYGCTGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEP 118
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK--- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 119 LMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKA 178
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
SK T FI+E PG +K +G R SDT +VFE+ VP ENVL EG G
Sbjct: 179 PASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFK-- 236
Query: 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 324
+ M D R +AAG +G+ Q LD Y +R+ FG+ L E Q I ADM
Sbjct: 237 ---IAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADMAM 293
Query: 325 ALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 384
++ +R A + D+G+ + + AA+ A Q+ A+Q GGNG+ EY
Sbjct: 294 KVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVE 353
Query: 385 RLLRDAKLYEIGAGTSEIRRMIIGR 409
+L+RDAK+Y+I GT++I+R+II R
Sbjct: 354 KLMRDAKIYQIYEGTAQIQRIIIAR 378
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 198/387 (51%), Gaps = 17/387 (4%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 38 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 93
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 94 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 151
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 152 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 211
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 212 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 271
Query: 263 SFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 322
V M D R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M
Sbjct: 272 -----VAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEM 326
Query: 323 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 382
++ +R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY
Sbjct: 327 AMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYP 386
Query: 383 TGRLLRDAKLYEIGAGTSEIRRMIIGR 409
+L+RDAK+Y+I GTS+I+R+I+ R
Sbjct: 387 VEKLMRDAKIYQIYEGTSQIQRLIVAR 413
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 206 bits (524), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 198/387 (51%), Gaps = 17/387 (4%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDV--NLWKLMGNFNLHGITAPQ 86
S F + Q +F+ + +FARE I P AA D++ +P + W+L G N H P+
Sbjct: 13 SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWEL-GLMNTH---IPE 68
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLIS 145
C+ EE+ A G G+ N L ++ G+ QK KYL ++
Sbjct: 69 NCGGLGLGTFDACLISEEL--AYGCTGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTE 126
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK- 204
+ A ++EP AGSDV G+K KA++ YIING KMW TNG A + A++D
Sbjct: 127 EPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDP 186
Query: 205 --AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCN 262
+K T FI+E PG +K +G R SDT +VFE+ VP ENVL +G G
Sbjct: 187 KAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFK 246
Query: 263 SFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADM 322
V M D R V+AAG +G+ Q LD Y +R+ FG+ L E Q I A+M
Sbjct: 247 -----VAMGAFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEM 301
Query: 323 YTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYA 382
++ +R A + D+G+ + + A + A Q+ A+Q LGGNG+ EY
Sbjct: 302 AMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYP 361
Query: 383 TGRLLRDAKLYEIGAGTSEIRRMIIGR 409
+L+RDAK+Y+I GTS+I+R+I+ R
Sbjct: 362 VEKLMRDAKIYQIYEGTSQIQRLIVAR 388
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 196/388 (50%), Gaps = 14/388 (3%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAP-- 85
T+ + F+ + +F + P + ++ P+ + W MG +G P
Sbjct: 6 TARYLREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGE---NGFLCPWV 60
Query: 86 QEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145
E + + + E GS + G H+++ + +G+ QK K+LPK ++
Sbjct: 61 DEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHNDIVTPYIASYGTEEQKQKWLPKCVT 120
Query: 146 GEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205
GE + A+AM+EP AGSD+ + A + YI+NG K + TNG A +VV KTD +A
Sbjct: 121 GELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQA 180
Query: 206 G--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263
+GI+ ++E+ PGF+ +KL+K+G+ DT EL F++ VP N+LG+EGK
Sbjct: 181 KPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGK---- 236
Query: 264 FGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 323
G Y +M L ERLV+A + + YV+QR FG+ + EFQ +Q + A+M
Sbjct: 237 -GFYYLMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMA 295
Query: 324 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 383
T + R++V V + GK + + E A +V +A+Q GG GY+ EY
Sbjct: 296 TEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEI 355
Query: 384 GRLLRDAKLYEIGAGTSEIRRMIIGRAL 411
R RD + I AGT+E+ + II R L
Sbjct: 356 ARRYRDIPVSAIYAGTNEMMKTIIARQL 383
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/399 (31%), Positives = 195/399 (48%), Gaps = 27/399 (6%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
FD++ + + F + P ++ +V L + G L I P+E
Sbjct: 28 FDESVKEIARTTRTFVEREVLPLLERMEHGE-LELNVPLMRKAGELGLLAIDVPEEYGGL 86
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ EE+S SG ++YGAH+++ LV G+ QK KYLPKL SGE + A
Sbjct: 87 DLPKVISTVVAEELS-GSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP +GSD + K +A + G YI+NG K W +N A V+AK D +
Sbjct: 146 YCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVD----GEH 201
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
TAF++E+ PG S + K+G++ S T +++ E+ VP ENVLG+ GKG +
Sbjct: 202 FTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHK-----IA 256
Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
+ L++ R L AG +G + L++ Y QR QFGRP+G F IQ K +M + + ++
Sbjct: 257 FNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAA 316
Query: 330 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTL--------------QAIQCLGGN 375
S VY D + K V+ E A + ++ + +Q GG
Sbjct: 317 ESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGY 376
Query: 376 GYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414
GY EY R RDA++ I GT+EI R++I LL++
Sbjct: 377 GYSQEYPIERAYRDARINRIFEGTNEINRLLIPGMLLRR 415
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 198 bits (503), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 192/394 (48%), Gaps = 14/394 (3%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 3 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 60
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 61 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 120
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 121 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 180
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 181 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL-- 237
Query: 257 EGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 316
+ G+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ
Sbjct: 238 ----PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 293
Query: 317 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 376
K ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 294 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 353
Query: 377 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 410
+E+ R L + ++ GT +I +I+GRA
Sbjct: 354 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 387
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 192/394 (48%), Gaps = 14/394 (3%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 7 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 64
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 65 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 124
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 125 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 184
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 185 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL-- 241
Query: 257 EGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 316
+ G+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ
Sbjct: 242 ----PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 297
Query: 317 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 376
K ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 298 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 357
Query: 377 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 410
+E+ R L + ++ GT +I +I+GRA
Sbjct: 358 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 391
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 192/394 (48%), Gaps = 14/394 (3%)
Query: 22 SAAFSSTSLLFDDTQL-----QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGN 76
+A F L D QL +++ +A+ +APR + + D +++ MG
Sbjct: 4 AATFHWDDPLLLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHET--TDAAIFREMGE 61
Query: 77 FNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQK 136
L G T P++ + + E+ R S+L + + GS AQK
Sbjct: 62 IGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQSSLVMVPIFEFGSDAQK 121
Query: 137 DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLV 196
+KYLPKL +GE +G ++EPN GSD M +A +V GGY ++G+KMW TN P+A V
Sbjct: 122 EKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFV 181
Query: 197 VYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ 256
V+AK D + G I FI+EKG G S K+G+R S T E+V + FVP EN+L
Sbjct: 182 VWAKLD-EDGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL-- 238
Query: 257 EGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQ 316
+ G+ + L+ R +A G LG ++C + YV R+QFGRPL Q IQ
Sbjct: 239 ----PHVKGLRGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQ 294
Query: 317 GKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNG 376
K ADM T + V + R D G + + + + +A + A LGGNG
Sbjct: 295 KKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNG 354
Query: 377 YVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 410
+E+ R L + ++ GT +I +I+GRA
Sbjct: 355 ISDEFGVARHLVNLEVVNTYEGTHDIHALILGRA 388
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 191 bits (484), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 119/384 (30%), Positives = 201/384 (52%), Gaps = 10/384 (2%)
Query: 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXX 89
LL + E + A + + P ++ ++P+ V ++ +G L + P+E
Sbjct: 14 LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPEGV--FEQLGAAGLLSLPQPEEWG 71
Query: 90 XXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHV 149
+ +EEI+ SV ++ HS L + L+ G+ QK ++LP ++SGE +
Sbjct: 72 GGGQPYEVYLQVLEEIAARWASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQI 130
Query: 150 GALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
GA ++SEP AGSD ++C A DGGY+ING+K W T+G A ++A+T GS+G
Sbjct: 131 GAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTG--EGSRG 188
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
++ F++ PG S + +K+G+ T ++N + + +G+EG+G +
Sbjct: 189 VSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQ-----IA 243
Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
S LD RL +AA G+ QA LD + Y +R FGR + + Q + ADM A+ ++
Sbjct: 244 FSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATA 303
Query: 330 RSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389
R+ AR D G+ + + L A + A +VT A+Q GG GY +Y R +R+
Sbjct: 304 RATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMRE 363
Query: 390 AKLYEIGAGTSEIRRMIIGRALLK 413
AK+ +I GT++I+R++I R L +
Sbjct: 364 AKIMQIFEGTNQIQRLVIARGLTR 387
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 192/384 (50%), Gaps = 20/384 (5%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXX 91
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 26 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 85
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 86 GLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAA 145
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 146 FCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATG 205
Query: 210 -----ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G
Sbjct: 206 AVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFK-- 263
Query: 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 324
V M L+ R +AA G M+ + + + R QFG + F IQ K A M
Sbjct: 264 ---VAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVM 320
Query: 325 ALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYAT 383
+ S Y V+ + D G D + A + + +E A +VT + IQ +GG G++ E
Sbjct: 321 LQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 380
Query: 384 GRLLRDAKLYEIGAGTSEIRRMII 407
R+LRD +++ I GT++I R+ +
Sbjct: 381 ERVLRDLRIFRIFEGTNDILRLFV 404
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 187 bits (476), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 192/384 (50%), Gaps = 20/384 (5%)
Query: 39 FKESVGQFARENIAPRAANIDQSNSFPQDVNL-------WKLMGNFNLHGITAPQEXXXX 91
E QF +E + P + ++ N ++ L W+ + G+ P E
Sbjct: 46 LNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGV 105
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ +E + VG++ GAH ++ ++ G+ AQK+KYLPKL SGE V A
Sbjct: 106 GLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAA 165
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
++EP++GSD ++ A G Y +NG+K+W +NG +A V+AKT + + G
Sbjct: 166 FCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATG 225
Query: 210 -----ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
ITAF++E+G G + K+G++ S+T E+ F+ VP+ENVLG+ G G
Sbjct: 226 AVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFK-- 283
Query: 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 324
V M L+ R +AA G M+ + + + R QFG + F IQ K A M
Sbjct: 284 ---VAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVM 340
Query: 325 ALQSSRSYVYSVARDCDNGKVDPKDCAGVI-LCAAERATQVTLQAIQCLGGNGYVNEYAT 383
+ S Y V+ + D G D + A + + +E A +VT + IQ +GG G++ E
Sbjct: 341 LQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGV 400
Query: 384 GRLLRDAKLYEIGAGTSEIRRMII 407
R+LRD +++ I GT++I R+ +
Sbjct: 401 ERVLRDLRIFRIFEGTNDILRLFV 424
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 190/404 (47%), Gaps = 32/404 (7%)
Query: 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXX 91
F ++ F + P ++Q + F + V L K G L G P+E
Sbjct: 33 FSSEHKXIAKTTEDFIVNEVLPELEYLEQ-HEFDRSVRLLKEAGELGLLGADVPEEYGGI 91
Query: 92 XXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGA 151
+ E+ SRA G +++GAH + +V G+ QK KYLP L +GE + A
Sbjct: 92 GLDKVSSALIAEKFSRAGG-FAITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAA 150
Query: 152 LAMSEPNAGSDVVGMKCKADRVDGG--YIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG 209
A++EP +GSD +G K A G Y++NG K W TN A +VYAK D +
Sbjct: 151 YALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKID----GEH 206
Query: 210 ITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269
+AFI+EK G ST+ + K G++ S T L+ E+ VP EN+LG+ GKG +
Sbjct: 207 FSAFIVEKDYAGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGH-----IIA 261
Query: 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSS 329
+ L++ R L G +G + +++ Y QR+QF +P+ F IQ K A+ ++
Sbjct: 262 FNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAA 321
Query: 330 RSYVYSV-----ARDCDNGKVDPKDCAGVILCAAERATQVTL--------------QAIQ 370
S VY +R + + KD V AE A + +L + +Q
Sbjct: 322 ESSVYRTVGLFESRXSTLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQ 381
Query: 371 CLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414
GG G+ EY R RD+++ I GT+EI R+I+ L++
Sbjct: 382 IHGGYGFXAEYEIERXYRDSRINRIFEGTNEINRLIVPGTFLRK 425
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/387 (28%), Positives = 189/387 (48%), Gaps = 10/387 (2%)
Query: 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEX 88
S+ ++ Q +F++ FA +AP A DQ FP DV + G+ +
Sbjct: 16 SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDV--MRKAAQLGFGGVYIQTDV 73
Query: 89 XXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148
+ E ++ S H N+C + G+ Q+ K+ P L + E
Sbjct: 74 GGSGLSRLDTSVIFEALATGCTSTTAYISIH-NMCAWMIDSFGNEEQRHKFCPPLCTMEK 132
Query: 149 VGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK 208
+ ++EP +GSD + A + YI+NG+K + + + VV +T G K
Sbjct: 133 FASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPK 191
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268
GI+ ++EKG PG S +K K+G T ++FE+C VP N +G EG+ G +
Sbjct: 192 GISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQ-----GFLI 246
Query: 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQS 328
+ GL+ R+ +A+ LG A + + ++ R+QFG PL Q++Q ADM T L +
Sbjct: 247 AVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVA 306
Query: 329 SRSYVYSVARDCDNGKVDPKD-CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 387
+R V + A + D C+ L A + + QA+Q GG GY+ +YA + +
Sbjct: 307 ARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYV 366
Query: 388 RDAKLYEIGAGTSEIRRMIIGRALLKQ 414
RD+++++I G++E+ R++I R+LL++
Sbjct: 367 RDSRVHQILEGSNEVMRILISRSLLQE 393
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 111/367 (30%), Positives = 180/367 (49%), Gaps = 9/367 (2%)
Query: 46 FARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEI 105
F IAP+ A + P+D++L L GI P+E + E I
Sbjct: 43 FVEREIAPKLAEWEHVGEIPRDLHL--NAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100
Query: 106 SRASGSVGLSYGAHSN-LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVV 164
A GS G+ ++ + + + +GS A ++Y+ ++G+ +G+L ++EP AGSDV
Sbjct: 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVA 160
Query: 165 GMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFST 224
++ +A R Y++NG K + T+G A + +T G G++ +I+K PGF
Sbjct: 161 NLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPGFEV 219
Query: 225 AQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGP 284
+++LDK+G R SDT EL F + VP +N++G E NS G +M ERL +A
Sbjct: 220 SRRLDKMGWRCSDTAELSFVDVRVPADNLVGAE----NS-GFLQIMQQFQAERLGIAVQA 274
Query: 285 LGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 344
LD+ + R+RE FGRPL Q I+ K A+M + + +Y +V + G+
Sbjct: 275 YATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGE 334
Query: 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRR 404
+ + A V +A+Q GG GY+ E R RD ++ IG GT+EI
Sbjct: 335 DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMN 394
Query: 405 MIIGRAL 411
+I + +
Sbjct: 395 EVIAKRI 401
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 182/388 (46%), Gaps = 12/388 (3%)
Query: 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQ 86
S S+ + +++V FA + P A +++ P++++ + L G P+
Sbjct: 21 SMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPRELH--RKAAELGLLGAGFPE 78
Query: 87 EXXXXXXXXXXHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLI 144
+ + EE+ A GS G Y + + + ++ G D Y+ +
Sbjct: 79 DAGGSGGDGADPVVICEEMHYA-GSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTL 137
Query: 145 SGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK 204
GE +GALA++EP GSDV ++ +AD Y+ING K + T+G A +V A+T
Sbjct: 138 RGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-G 196
Query: 205 AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264
G+ G++ +++KG PGF +KLDK+G R SDT EL + + VP N++G E G
Sbjct: 197 PGAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQ- 255
Query: 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 324
+ + ER+ LA Q CLD+ + + R R+ FGRPL Q +Q A M
Sbjct: 256 ----IAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMAR 311
Query: 325 ALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 383
+ +R Y V G+ + + A E V QA+Q GG GY+ E
Sbjct: 312 RIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEV 371
Query: 384 GRLLRDAKLYEIGAGTSEIRRMIIGRAL 411
R RD ++ IG GT+EI + + L
Sbjct: 372 ERQYRDMRILGIGGGTTEILTSLAAKTL 399
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/291 (33%), Positives = 142/291 (48%), Gaps = 11/291 (3%)
Query: 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIIN 180
+L + + GS QKD++LP + SG +G ++EP+ GSD GM+ +A R +I+
Sbjct: 117 SLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILT 176
Query: 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCE 240
G KMW TNG VA VV+A+TD +GI F++ PGF+ K+ +R S T E
Sbjct: 177 GTKMWITNGSVADVAVVWARTD-----EGIRGFVVPTDTPGFTANTIKSKMSLRASVTSE 231
Query: 241 LVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 300
LV + +P+ L G S G + L+ R + G LG + CL+ L Y
Sbjct: 232 LVLDGVRLPDSARL----PGATSLGAPLRC--LNEARFGIVFGALGAARDCLETALAYAC 285
Query: 301 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAER 360
REQF RP+G FQ Q K ADM + R D G++ P+ + L
Sbjct: 286 SREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVRE 345
Query: 361 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411
A ++ A LG +G EY R + + GTSE+ +IIG+AL
Sbjct: 346 AIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQAL 396
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 108/384 (28%), Positives = 172/384 (44%), Gaps = 14/384 (3%)
Query: 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQE 87
T L D + +V QF + P +S + P + L K GN + G+ Q
Sbjct: 22 TDRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPSE--LAKEFGNLGVLGMHL-QG 78
Query: 88 XXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147
+ +A E+ +L + + R+GS QK+++LP+L +G+
Sbjct: 79 YGCAGTNAVSYGLACMELEAGDSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGD 138
Query: 148 HVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207
+G ++EP+ GS+ GM+ +A R +I+NG KMW TNG +A V+A+TD
Sbjct: 139 AIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTD----- 193
Query: 208 KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267
GI F++ PGF+ + KL +R S T ELV +N +P L + G+
Sbjct: 194 DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL------AEGLS 247
Query: 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 327
+S L+ R + G LG + L+ + Y + RE F +PL +Q Q K A+M L
Sbjct: 248 APLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELG 307
Query: 328 SSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLL 387
+ R D V P+ + L A + + LGG+G EY+ R
Sbjct: 308 KGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHA 367
Query: 388 RDAKLYEIGAGTSEIRRMIIGRAL 411
+ + GTSE+ + IG+AL
Sbjct: 368 NNLESVLTYEGTSEMHLLSIGKAL 391
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 172/378 (45%), Gaps = 15/378 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T +
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTI-KGYGCAGVSS 76
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+ + E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 77 VAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGL 273
++EKGM G S + K +R S T ++ + VP ENVL FG L
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC------L 246
Query: 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 333
+ R +A G LG + CL Y R QFG PL Q IQ K ADM T +
Sbjct: 247 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 306
Query: 334 YSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 393
+ R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 307 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAV 366
Query: 394 EIGAGTSEIRRMIIGRAL 411
GT +I +I+GRA+
Sbjct: 367 NTYEGTHDIHALILGRAI 384
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 152 bits (383), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 109/378 (28%), Positives = 171/378 (45%), Gaps = 15/378 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T
Sbjct: 18 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTIKGYGCAGVSSV 75
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+A E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 76 AYGLLA-RELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 134
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 135 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 190
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGL 273
++EKGM G S + K +R S T ++ + VP ENVL FG L
Sbjct: 191 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC------L 244
Query: 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 333
+ R +A G LG + CL Y R QFG PL Q IQ K ADM T +
Sbjct: 245 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 304
Query: 334 YSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 393
+ R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 305 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAV 364
Query: 394 EIGAGTSEIRRMIIGRAL 411
GT +I +I+GRA+
Sbjct: 365 NTYEGTHDIHALILGRAI 382
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 172/378 (45%), Gaps = 15/378 (3%)
Query: 36 QLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXX 95
++ +++ + +E + PR +++ F +++ MG + G T +
Sbjct: 20 EILIRDTFRTYCQERLMPRILLANRNEVFHREI--ISEMGELGVLGPTI-KGYGCAGVSS 76
Query: 96 XXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMS 155
+ + E+ R + S+L ++ + +GS Q+ KYLP+L GE +G ++
Sbjct: 77 VAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLT 136
Query: 156 EPNAGSDVVGMKCKA--DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAF 213
EPN+GSD M+ +A + + Y +NG K W TN P+A VV+A+ + I F
Sbjct: 137 EPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGF 192
Query: 214 IIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGL 273
++EKGM G S + K +R S T ++ + VP ENVL FG L
Sbjct: 193 LLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGC------L 246
Query: 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYV 333
+ R +A G LG + CL Y R QFG PL Q IQ K ADM T +
Sbjct: 247 NNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHAC 306
Query: 334 YSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 393
+ R D K P+ + + +A + QA LGGNG +EY R + +
Sbjct: 307 LQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAV 366
Query: 394 EIGAGTSEIRRMIIGRAL 411
GT +I +I+GRA+
Sbjct: 367 NTYDGTHDIHALILGRAI 384
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 9/312 (2%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLER 277
PG + +K+G+R +++ +N FVP+E+ L G NSF + L + R
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSFQDTSKV--LAVSR 288
Query: 278 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 337
+++A P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + +
Sbjct: 289 VMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLC 348
Query: 338 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 397
+ + G++ P + + +A + + LGGNG + ++ + D +
Sbjct: 349 KLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYE 408
Query: 398 GTSEIRRMIIGR 409
GT +I ++ GR
Sbjct: 409 GTYDINTLVTGR 420
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 150 bits (379), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 9/312 (2%)
Query: 98 HCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157
+ IA EI+R S HS+L + + GS AQK+KYLP L V A++EP
Sbjct: 118 NAIATAEIARVDASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEP 177
Query: 158 NAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEK 217
+ GSD G+ A +V+GG+ ING K W N A L+++A+ + I FI++K
Sbjct: 178 DNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTT---TNQINGFIVKK 234
Query: 218 GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLER 277
PG + +K+G+R +++ +N FVP+E+ L G NSF + L + R
Sbjct: 235 DAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL----PGVNSFQDTSKV--LAVSR 288
Query: 278 LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVA 337
+++A P+GI D+ Y+++R+QFG PL FQ Q K M +Q+ + +
Sbjct: 289 VMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLC 348
Query: 338 RDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 397
+ + G++ P + + +A + + LGGNG + ++ + D +
Sbjct: 349 KLYETGQMTPGQASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYE 408
Query: 398 GTSEIRRMIIGR 409
GT +I ++ GR
Sbjct: 409 GTYDINTLVTGR 420
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 170/388 (43%), Gaps = 13/388 (3%)
Query: 25 FSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84
F + L + + +++ +F + P + + FP +L G T
Sbjct: 4 FYALEDLLTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFP--THLIPRFAELGFLGPTL 61
Query: 85 PQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144
P E + + E+ R + S+L + + +GS QK ++LPKL
Sbjct: 62 PPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLA 121
Query: 145 SGEHVGALAMSEPNAGSDVVG-MKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203
GE VG ++EP+ GSD G MK +A R +++NG KMW TNG +A V++AK +
Sbjct: 122 RGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDE- 180
Query: 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263
+ F++ PGF + K+ +R S T ELV E VP L + +
Sbjct: 181 ---GGEVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRLPK------A 231
Query: 264 FGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 323
G+ +S L R +A G +G ++A + + + + R FG PL + Q +Q K A+M
Sbjct: 232 LGLKAPLSCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEML 291
Query: 324 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 383
+ +AR D GK+ P + +A Q A LGG+G EY
Sbjct: 292 AWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQAARMARDILGGSGITLEYHA 351
Query: 384 GRLLRDAKLYEIGAGTSEIRRMIIGRAL 411
R + + + GT ++ +++GR +
Sbjct: 352 IRHMLNLETVYTYEGTHDVHTLVLGREI 379
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 138/288 (47%), Gaps = 16/288 (5%)
Query: 129 RHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGY-IINGNKMWCT 187
R G Q+ +L +L SG+ + A+ SE AGSD+ M+ + R+DG +++G+K+W T
Sbjct: 87 RLGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRV-RLDGDTAVVDGHKVWTT 144
Query: 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCF 247
A LVV+ + +G+ ++ PG + G R + +L +
Sbjct: 145 AAAYADHLVVFGLQEDGSGA----VVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVR 200
Query: 248 VPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 307
VP VL G S + V S L R +A G +GI++AC + + R REQFGR
Sbjct: 201 VPAGAVLAGSGA---SLPMLVAAS-LAYGRKSVAWGCVGILRACRTAAVAHARTREQFGR 256
Query: 308 PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILC---AAERATQV 364
PLG+ Q + G AD++TA Q + + D G P+ IL AAERA
Sbjct: 257 PLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGS--PEMVPATILAKHVAAERAAAG 314
Query: 365 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 412
A Q L G + R RDAKL EI G+SE+ R+++ + L
Sbjct: 315 AATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHAL 362
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 140/302 (46%), Gaps = 36/302 (11%)
Query: 132 SPAQKDKYLPKLISGEHVGAL----AMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWC 186
+P D+Y L+ G L M+E GSDV+ +A+R+ DG Y + G+K W
Sbjct: 158 TPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHK-WF 216
Query: 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMP-GFSTAQKL----DKLGMRGSDTCEL 241
+ P + +V A+T + G++ F + + +P G A +L DKLG R + +CE+
Sbjct: 217 FSVPQSDAHLVLAQT-----AGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEV 271
Query: 242 VFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 301
F++ +LG EG+G + + M G+ R A G +M+ + + + Q
Sbjct: 272 EFQDAI---GWLLGLEGEGIR---LILKMGGMT--RFDCALGSHAMMRRAFSLAIYHAHQ 323
Query: 302 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDC---------AG 352
R FG PL + ++ + M L+ + ++ +AR D + D K+ A
Sbjct: 324 RHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDR-RADAKEALWARLFTPAAK 382
Query: 353 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 412
++C +R +A++ LGG GY E RL R+ + I G+ I + + R L
Sbjct: 383 FVIC--KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLN 440
Query: 413 KQ 414
KQ
Sbjct: 441 KQ 442
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 118/296 (39%), Gaps = 15/296 (5%)
Query: 130 HGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTN 188
+GS QK ++L L+ G M+EP+ A SD ++C R + Y+ING K W +
Sbjct: 130 YGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSSG 189
Query: 189 G--PVAQTLVVYAKTDIKAGS--KGITAFIIEKGMPGFSTAQKLDKLGMRGS---DTCEL 241
P + +V +T + S K + ++ PG + L G + E+
Sbjct: 190 AGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEI 249
Query: 242 VFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ 301
F VP N++ EG+G + L R+ +G+ + L ++ Q
Sbjct: 250 HFNQVRVPATNLILGEGRGFE-----ISQGRLGPGRIHHCMRTVGLAERALQIMCERATQ 304
Query: 302 REQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAER 360
R F + L + + A+ A++ R A D G K +I AA R
Sbjct: 305 RIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPR 364
Query: 361 A-TQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 415
A +++ AIQ GG G +Y + ++ + G E+ I L+ Q
Sbjct: 365 AVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLSAIATMELRDQ 420
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 103/225 (45%), Gaps = 12/225 (5%)
Query: 175 GGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR 234
GG++++G K + PV V+ A+TD G + + ++ + PGF+ D LGMR
Sbjct: 161 GGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMR 220
Query: 235 GSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDV 294
S T ++VF++C +P ++VL ++ G + V ++G + + + +G+ QA D
Sbjct: 221 ASGTVDIVFDDCPIPADHVLMRDPVGARNDAV---LAGQTVSSVSVLGVYVGVAQAAYDT 277
Query: 295 VLPYVRQREQFGRPLGEFQFIQGKTADMY-------TALQSSRSYVYSVARDCDN-GKVD 346
+ + +R + + + + +Y +AL ++ + ++ D D G+
Sbjct: 278 AVAALERRPEPPQ-AAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQM 336
Query: 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 391
+ L A ++ + +GG Y + RLLRD +
Sbjct: 337 MRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQ 381
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/296 (25%), Positives = 118/296 (39%), Gaps = 13/296 (4%)
Query: 127 LVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185
L R+GS QK+ +L L+ G+ A M+EP+ A SD M A +ING K W
Sbjct: 121 LHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVINGRKWW 180
Query: 186 CT--NGPVAQTLVVYAKTDIKAGSKGITAFI-IEKGMPGFSTAQKLDKLGMRGSDTCELV 242
T P + ++ TD A + + + PG + + L +G V
Sbjct: 181 STGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGV 240
Query: 243 --FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVR 300
F+N +P + + GKG + L R+ A +G+ + L+
Sbjct: 241 VSFDNVRLPADAFIAGPGKGFE-----IAQGRLGPGRVHHAMRLIGLAEVALEHACRRGL 295
Query: 301 QREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKVDPKDCAGVILCAAE 359
R FG+PL + + AD A+ +R V A D G + I AA
Sbjct: 296 DRTAFGKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAP 355
Query: 360 R-ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414
A QV AIQ GG G N++ +A+ + G E+ R ++ R L +
Sbjct: 356 NMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEVHRGVVARIELAK 411
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/360 (22%), Positives = 145/360 (40%), Gaps = 33/360 (9%)
Query: 50 NIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXH-CIAMEEISRA 108
I+ AA+ D++ +FP V ++ L G T P E A+ ++ A
Sbjct: 26 RISAEAADRDRTGTFP--VEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83
Query: 109 SGSVGLSYGAH--SNLCINQLVRHGSP---AQKDKYLPKLISGEHVGALAMSEPNAGSDV 163
S L++ L + +HG+P A ++ L + GE A+ +
Sbjct: 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPG---- 139
Query: 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFS 223
V + +D GG++++G K+ + P+A V+A+ GS + ++ + PG +
Sbjct: 140 VVTELHSDGA-GGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAG 283
D LGMR S T E+VF+ C V + +L + G V ++G + + +
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAV---LAGQTVSSITMLGI 255
Query: 284 PLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 343
GI QA D+ + + R G P + + A + T L + R+ V + + D
Sbjct: 256 YAGIAQAARDIAVGFCAGRG--GEPRAGARAL---VAGLDTRLYALRTTVGAALTNADAA 310
Query: 344 KV----DPKDCAGVI--------LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 391
V DP + + + E A V + +GG Y + RL RD +
Sbjct: 311 SVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVR 370
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 132/323 (40%), Gaps = 41/323 (12%)
Query: 102 MEEISRASGSVGLSYGAH-SNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAG 160
+ EI+ A GS+G +G H +N + +L+ GS Q++ ++ A SE N
Sbjct: 100 VREIAAADGSLGHLFGYHLTNAPMIELI--GSQEQEEHLYTQIAQNNWWTGNASSENN-- 155
Query: 161 SDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKG-ITAFIIEKG 218
S V+ K A DGGY++NG K +C+ + L V+ + +G I A I
Sbjct: 156 SHVLDWKVSATPTEDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTS 215
Query: 219 MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSG-----L 273
G + +GMR +D+ F N V + VLG N+F + + S
Sbjct: 216 RAGVTPNDDWAAIGMRQTDSGSTDFHNVKVEPDEVLG----APNAFVLAFIQSERGSLFA 271
Query: 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT--------- 324
+ +L+ A LGI LD Y R + + P G IQ T D YT
Sbjct: 272 PIAQLIFANVYLGIAHGALDAAREYTRTQARPWTPAG----IQQATEDPYTIRSYGEFTI 327
Query: 325 ALQ----SSRSYVYSVARDCDNGK-VDPKD-------CAGVILCAAERATQVTLQAIQCL 372
ALQ ++R + + D G + P+D +GV A A ++ + +
Sbjct: 328 ALQGADAAAREAAHLLQTVWDKGDALTPEDRGELMVKVSGVKALATNAALNISSGVFEVI 387
Query: 373 GGNGYVNEYATGRLLRDAKLYEI 395
G G Y R R+ + + +
Sbjct: 388 GARGTHPRYGFDRFWRNVRTHSL 410
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 41/312 (13%)
Query: 135 QKDKYLPKLISGE--HVGALAMSEPNAGSDVV-----GMKCKADRVDGG-YIINGNKMWC 186
Q ++L +SGE + +L SEP ++ + G + A R++G ++ING KMW
Sbjct: 113 QHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTA-RLEGDEWVINGEKMWA 171
Query: 187 TNGP--------VAQTLVVYAKTDIKAGSKGITAFII---------EKGMPGFSTAQKLD 229
TN +A + A T ++ G +I G F + +
Sbjct: 172 TNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVA 231
Query: 230 KLGMRGSDTCELVFENCFVPNENVLGQEGKGCN-SFGVYVMMSGLDLERLVLAAGPLGIM 288
G + + N VP +NVL G+G +FG + D +++ A +G+M
Sbjct: 232 TPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAF------DGSAVLVGAMGVGLM 285
Query: 289 QACLDVVLPYVRQREQFGR-PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD- 346
+A D L + ++ + G PL E Q + + +++R+ + A +NG D
Sbjct: 286 RAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTWKAAHAMENGPGDY 345
Query: 347 ----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSE 401
A + C +E A + I +G + Y + LL A + I G
Sbjct: 346 DARRELALAAKVFC-SEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPIFDGGNVG 404
Query: 402 IRRMIIGRALLK 413
IRR + + +LK
Sbjct: 405 IRRRHLQQLMLK 416
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 138/355 (38%), Gaps = 58/355 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 246 FTEFHVPHENLLCTPGLKAQG----LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 301
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 302 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 361
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 411
+ A + + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 362 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFNGGNIGLRRRQMQRVM 416
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 66/341 (19%), Positives = 130/341 (38%), Gaps = 57/341 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLXPVILCDSPSLQEKFLKPFISGEGEPLASLXHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + ++ A +G +A + L + +
Sbjct: 247 FTEFHVPHENLLCTPGLKAQG----LVETAFAXSAALVGAXAIGTARAAFEEALVFAKSD 302
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 303 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEXAXQTKIYT 362
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 398
+ A + + A + +G Y + + RLL + Y + G
Sbjct: 363 TDVAVECVIDAXKAVGXKSYAKDXSFPRLLNEVXCYPLFDG 403
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/341 (19%), Positives = 132/341 (38%), Gaps = 57/341 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 247 FTEFHVPHENLLCTPGLKAQG----LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 302
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 303 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 362
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 398
+ A + + A++ +G Y + + RLL + Y + G
Sbjct: 363 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFEG 403
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 138/355 (38%), Gaps = 58/355 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 246 FTEFHVPHENLLCTPGLKAQG----LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 301
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 302 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 361
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 411
+ A + + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 362 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 138/355 (38%), Gaps = 58/355 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 247 FTEFHVPHENLLCTPGLKAQG----LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 302
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 303 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 362
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 411
+ A + + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 363 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 417
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/355 (19%), Positives = 138/355 (38%), Gaps = 58/355 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 77 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 135
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 136 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 195
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 196 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 245
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 246 FTEFHVPHENLLCTPGLKAQG----LVETAFAMAAALVGAMAIGTARAAFEEALVFAKSD 301
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 302 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 361
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI-GAGTSEIRRMIIGRAL 411
+ A + + A++ +G Y + + RLL + Y + G +RR + R +
Sbjct: 362 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDGGNIGLRRRQMQRVM 416
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/341 (19%), Positives = 132/341 (38%), Gaps = 57/341 (16%)
Query: 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE--HVGALAMSEP 157
I +EE+ + ++ A + L + ++ SP+ ++K+L ISGE + +L SEP
Sbjct: 78 IILEELFAVEPATSITIVA-TALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEP 136
Query: 158 NAGSDVV-----GMKCKADRVDGGYIINGNKMWCTNG----------------------- 189
N ++ + G++ A +V ++I+G K+W +N
Sbjct: 137 NGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSK 196
Query: 190 -------PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELV 242
P Q V+ + A +K I+ G P + G +
Sbjct: 197 PQDPNVDPATQIAVLLVTRETIANNKKDAYQIL--GEPELA--------GHITTSGPHTR 246
Query: 243 FENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQR 302
F VP+EN+L G ++ + + ++ A +G +A + L + +
Sbjct: 247 FTEFHVPHENLLCTPGLKAQG----LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSD 302
Query: 303 EQFG-RPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN----GKVDPKDCAGVILCA 357
+ G + + E Q + K D L++SR V+ ++ KV + +
Sbjct: 303 TRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYT 362
Query: 358 AERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG 398
+ A + + A++ +G Y + + RLL + Y + G
Sbjct: 363 TDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYPLFDG 403
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 29/229 (12%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + I + G+ Q++K+LP + +G A +E GS+V G++ A D
Sbjct: 121 HWGMFIPAIKGQGTDKQQEKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPQTDE 180
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ G+ FI++ K +PG +
Sbjct: 181 FVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGVNGFIVQLRSLEDHKPLPGVT 240
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL------GQEGKGCNSFGVYVMMSG-- 272
K G D L F++ +P + +L +EGK S ++ G
Sbjct: 241 VGDIGMKFGNGAYNSMDNGVLSFDHVRIPRDQMLMRVSQVTKEGKYVQSDIPRQLLYGTM 300
Query: 273 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFIQGKT 319
+ + + ++A L + +A + Y R QFG G E Q I KT
Sbjct: 301 VYVRQSIVADASLAMSRAVC-IATRYSAVRRQFGSQNGGQETQVIDYKT 348
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY +NG W ++G + V IK G +F+I + + + +
Sbjct: 129 VDGGYTVNGAWAW-SSGCDHASWAVLGGPVIKDGRPVDFVSFLIPR--EDYRIDDVWNVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVL 254
G+RG+ + +V E+ FVP VL
Sbjct: 186 GLRGTGSNTVVVEDVFVPTHRVL 208
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 15/151 (9%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + L+ + Q++++ + E G A +E G+ + G++ A D
Sbjct: 103 HLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQE 162
Query: 177 YIINGN-----KMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFII-------EKGMPGFS 223
+I+N K W G + +V A+ + G+ AF++ K +PG +
Sbjct: 163 FILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGIT 222
Query: 224 TAQKLDKLGMRGSDTCELVFENCFVPNENVL 254
K G D L +N +P EN+L
Sbjct: 223 VGDIGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|3AFE|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|C Chain C, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFE|D Chain D, Crystal Structure Of The Hsaa Monooxygenase From
M.Tuberculosis
pdb|3AFF|A Chain A, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
pdb|3AFF|B Chain B, Crystal Structure Of The Hsaa Monooxygenase From M.
Tuberculosis
Length = 394
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 173 VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSK-GITAFIIEKGMPGFSTAQKLDKL 231
VDGGY++NG+ W + A V IK G +F+I + + +
Sbjct: 129 VDGGYLVNGSWNWSSGCDHASWTFVGGPV-IKDGRPVDFGSFLIPRSE--YEIKDVWYVV 185
Query: 232 GMRGSDTCELVFENCFVPNENVLGQE--------GKGCNSFGVYVMMSG 272
G+RG+ + LV ++ FVP L + G NS VY M G
Sbjct: 186 GLRGTGSNTLVVKDVFVPRHRFLSYKAMNDHTAGGLATNSAPVYKMPWG 234
>pdb|1W07|A Chain A, Arabidopsis Thaliana Acyl-Coa Oxidase 1
pdb|1W07|B Chain B, Arabidopsis Thaliana Acyl-Coa Oxidase 1
Length = 659
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 18/154 (11%)
Query: 119 HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA--DRVDGG 176
H + + + G+ Q+ K+L + +G A +E GS+V G++ A D
Sbjct: 102 HWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDE 161
Query: 177 YIIN-----GNKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-------KGMPGFS 223
++I+ +K W G V+ VVYA+ GI FI++ +P +
Sbjct: 162 FVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNIT 221
Query: 224 TAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254
K+G D L+F++ +P + +L
Sbjct: 222 VGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 8 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 55
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 356 CAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD--AKLYEIGAGTSEIRRMI 406
C A R T+V + LG NG++ + T RLLR+ ++Y + G+ I R +
Sbjct: 310 CTARRRTRVLI-----LGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL 357
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 209 GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268
GI F+ + + F ++++K GM+ S CE +F++C P+ +G GC++ +
Sbjct: 245 GIWNFMTSEQVVQF-VQERINKPGMKLSKICEELFDHCLAPHTR---GDGTGCDNMTAII 300
Query: 269 M 269
+
Sbjct: 301 V 301
>pdb|2OR0|A Chain A, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
pdb|2OR0|B Chain B, Structural Genomics, The Crystal Structure Of A Putative
Hydroxylase From Rhodococcus Sp. Rha1
Length = 414
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 18/127 (14%)
Query: 144 ISGEHVGALAMSEPNAGSDVVGMKCK------------ADRVDGGYIINGNKMWCTNGPV 191
I G H LA ++P ++ G A VDGGY++ G W +
Sbjct: 101 IVGVHPWELAFADPQVQEEIWGEDNDTWXASPYAPXGVATPVDGGYVLKGR--WSFSSGT 158
Query: 192 AQTLVVYAKTDIKAGSKGI-TAFIIEKGMPGFS---TAQKLDKLGMRGSDTCELVFENCF 247
+ + G GI T + +P D +G+RG+ + +L+ + F
Sbjct: 159 DHCQWAFLGAXVGDGEGGIATPSSLHVILPRTDYQIVEDTWDVIGLRGTGSKDLIVDGAF 218
Query: 248 VPNENVL 254
VP L
Sbjct: 219 VPGYRTL 225
>pdb|3V71|A Chain A, Crystal Structure Of Puf-6 In Complex With 5be13 Rna
Length = 382
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGM 166
VGL + + N + +LV +PA++ + L ++I G G LAM + VV +
Sbjct: 63 VGLCHSRNGNFIVQKLVELATPAEQRELLRQMIDG---GLLAMCKDKFACRVVQL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,715,479
Number of Sequences: 62578
Number of extensions: 480645
Number of successful extensions: 1017
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 836
Number of HSP's gapped (non-prelim): 72
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)