Query 014993
Match_columns 415
No_of_seqs 215 out of 1372
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:03:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139 Short-chain acyl-CoA d 100.0 9.9E-84 2.1E-88 580.9 24.2 364 30-401 35-398 (398)
2 KOG0140 Medium-chain acyl-CoA 100.0 4.4E-81 9.5E-86 554.4 29.6 377 29-413 25-404 (408)
3 KOG0141 Isovaleryl-CoA dehydro 100.0 4.9E-81 1.1E-85 554.4 27.1 378 32-414 41-420 (421)
4 PLN02519 isovaleryl-CoA dehydr 100.0 1.1E-69 2.3E-74 537.2 44.0 381 30-415 24-404 (404)
5 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.3E-68 2.9E-73 527.0 43.4 372 30-413 11-382 (386)
6 cd01156 IVD Isovaleryl-CoA deh 100.0 1.1E-68 2.4E-73 526.3 42.2 374 33-413 3-376 (376)
7 PRK03354 crotonobetainyl-CoA d 100.0 1.2E-68 2.7E-73 526.0 42.3 372 32-413 5-377 (380)
8 cd01157 MCAD Medium chain acyl 100.0 1.1E-68 2.4E-73 526.6 41.7 373 33-413 2-377 (378)
9 TIGR03203 pimD_small pimeloyl- 100.0 6.1E-69 1.3E-73 526.5 38.9 367 32-410 4-375 (378)
10 cd01162 IBD Isobutyryl-CoA deh 100.0 2.7E-68 5.8E-73 523.1 42.1 373 33-414 2-375 (375)
11 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.5E-68 5.4E-73 522.7 40.8 368 33-410 2-370 (372)
12 cd01160 LCAD Long chain acyl-C 100.0 1.1E-67 2.3E-72 518.7 41.7 369 35-411 2-371 (372)
13 PRK12341 putative acyl-CoA deh 100.0 1.9E-67 4.1E-72 518.0 42.3 371 32-413 5-378 (381)
14 PTZ00461 isovaleryl-CoA dehydr 100.0 2E-67 4.3E-72 522.0 42.1 372 31-414 36-408 (410)
15 PLN02526 acyl-coenzyme A oxida 100.0 4.3E-67 9.2E-72 519.4 42.8 374 28-413 25-398 (412)
16 cd01161 VLCAD Very long chain 100.0 4.9E-67 1.1E-71 519.3 42.1 374 30-413 25-406 (409)
17 cd01158 SCAD_SBCAD Short chain 100.0 9.3E-66 2E-70 505.2 41.0 372 35-413 2-373 (373)
18 PRK09463 fadE acyl-CoA dehydro 100.0 1.9E-65 4E-70 529.2 41.3 392 6-407 53-466 (777)
19 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 2.7E-65 5.8E-70 504.7 39.7 372 37-413 4-394 (394)
20 PRK13026 acyl-CoA dehydrogenas 100.0 1.8E-64 3.9E-69 519.9 41.8 388 6-406 52-464 (774)
21 TIGR03204 pimC_large pimeloyl- 100.0 1.1E-63 2.5E-68 492.3 41.7 371 32-413 4-394 (395)
22 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.4E-62 3E-67 485.8 39.3 374 34-414 7-389 (393)
23 cd01153 ACAD_fadE5 Putative ac 100.0 1.2E-61 2.6E-66 480.2 39.6 361 40-410 2-405 (407)
24 PTZ00456 acyl-CoA dehydrogenas 100.0 2.3E-61 5.1E-66 493.7 41.1 374 30-412 54-479 (622)
25 PLN02876 acyl-CoA dehydrogenas 100.0 3.7E-61 7.9E-66 512.7 42.2 376 32-414 402-819 (822)
26 cd01152 ACAD_fadE6_17_26 Putat 100.0 1.4E-61 3.1E-66 476.1 35.5 364 36-413 3-380 (380)
27 KOG0137 Very-long-chain acyl-C 100.0 4.6E-61 1E-65 460.7 27.4 400 2-411 47-458 (634)
28 PLN02636 acyl-coenzyme A oxida 100.0 1.5E-59 3.3E-64 484.6 38.5 374 32-413 61-485 (686)
29 cd01163 DszC Dibenzothiophene 100.0 1.6E-59 3.4E-64 461.3 32.0 355 42-413 2-373 (377)
30 KOG0138 Glutaryl-CoA dehydroge 100.0 1.8E-58 3.9E-63 409.2 27.5 378 23-413 47-426 (432)
31 cd01154 AidB Proteins involved 100.0 4.2E-57 9E-62 448.3 38.9 356 42-412 36-417 (418)
32 PLN02312 acyl-CoA oxidase 100.0 1.9E-56 4.1E-61 460.5 38.5 351 58-413 100-487 (680)
33 cd01159 NcnH Naphthocyclinone 100.0 2.9E-56 6.2E-61 437.0 26.3 353 42-413 2-370 (370)
34 PRK11561 isovaleryl CoA dehydr 100.0 2.9E-53 6.3E-58 425.1 38.7 328 67-413 88-441 (538)
35 cd00567 ACAD Acyl-CoA dehydrog 100.0 2.5E-52 5.4E-57 402.7 36.8 324 35-409 2-327 (327)
36 PTZ00457 acyl-CoA dehydrogenas 100.0 2.4E-51 5.1E-56 408.6 36.2 335 6-404 14-362 (520)
37 PTZ00460 acyl-CoA dehydrogenas 100.0 9.6E-51 2.1E-55 416.7 32.4 304 109-413 88-431 (646)
38 cd01150 AXO Peroxisomal acyl-C 100.0 7.1E-50 1.5E-54 410.8 31.4 320 94-413 80-444 (610)
39 PLN02443 acyl-coenzyme A oxida 100.0 9.4E-47 2E-51 387.8 31.3 298 116-413 99-440 (664)
40 KOG1469 Predicted acyl-CoA deh 100.0 9.4E-48 2E-52 336.2 15.7 337 71-413 33-382 (392)
41 KOG0135 Pristanoyl-CoA/acyl-Co 100.0 6.5E-33 1.4E-37 264.6 19.9 319 95-414 104-465 (661)
42 TIGR02309 HpaB-1 4-hydroxyphen 100.0 1.2E-27 2.6E-32 238.1 24.2 232 134-378 127-390 (477)
43 PF00441 Acyl-CoA_dh_1: Acyl-C 99.9 2.3E-24 5E-29 183.9 18.3 148 265-412 3-150 (150)
44 KOG0136 Acyl-CoA oxidase [Lipi 99.9 1.5E-23 3.1E-28 205.4 20.9 305 109-413 104-448 (670)
45 PF02771 Acyl-CoA_dh_N: Acyl-C 99.8 1.4E-19 3E-24 146.6 8.0 112 34-147 2-113 (113)
46 PF08028 Acyl-CoA_dh_2: Acyl-C 99.7 5.6E-16 1.2E-20 129.5 13.2 123 278-400 1-133 (134)
47 COG2368 Aromatic ring hydroxyl 99.6 2.7E-14 5.8E-19 137.2 21.0 237 134-378 131-398 (493)
48 PF02770 Acyl-CoA_dh_M: Acyl-C 99.6 3.4E-15 7.4E-20 102.4 6.3 52 151-202 1-52 (52)
49 TIGR02310 HpaB-2 4-hydroxyphen 99.6 1.1E-12 2.4E-17 130.6 24.0 228 134-374 136-398 (519)
50 PF11794 HpaB_N: 4-hydroxyphen 98.9 1.5E-08 3.2E-13 92.9 11.0 121 134-254 123-263 (264)
51 PF03241 HpaB: 4-hydroxyphenyl 96.8 0.019 4.1E-07 51.3 11.5 91 277-379 23-119 (205)
52 PTZ00457 acyl-CoA dehydrogenas 94.0 0.7 1.5E-05 47.3 11.8 79 305-384 429-508 (520)
53 PF14749 Acyl-CoA_ox_N: Acyl-c 89.2 0.43 9.3E-06 38.9 3.4 33 116-148 92-124 (125)
54 KOG0137 Very-long-chain acyl-C 85.2 18 0.00038 37.1 12.6 92 281-374 511-603 (634)
55 PRK09463 fadE acyl-CoA dehydro 52.0 2.6E+02 0.0056 30.5 12.9 101 305-413 559-662 (777)
56 PF05284 DUF736: Protein of un 25.3 1.4E+02 0.003 23.5 4.3 57 190-248 23-80 (107)
57 PF02084 Bindin: Bindin; Inte 22.4 3.2E+02 0.007 24.5 6.4 66 60-146 97-163 (238)
58 PF05428 CRF-BP: Corticotropin 22.2 94 0.002 29.2 3.2 15 174-188 113-127 (311)
59 PF12584 TRAPPC10: Trafficking 22.1 2E+02 0.0043 23.9 5.1 45 170-227 64-113 (147)
No 1
>KOG0139 consensus Short-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-84 Score=580.88 Aligned_cols=364 Identities=40% Similarity=0.674 Sum_probs=352.5
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..++|++..+++.+++|+.+++.|.++++|++..+|+ .+++.+.++|++++.+|++|||.|.++...+.++|||++.|
T Consensus 35 ~~l~E~e~~l~~tvrkfa~~~i~Plv~~mD~~~~~~~--~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d 112 (398)
T KOG0139|consen 35 QILSETEQMLQKTVRKFAQEEIKPLVREMDRESRYPA--SVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVD 112 (398)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcchHHHhhhhhccCCH--HHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccC
Confidence 3445555599999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+|++..+..|+.+...+|..||+++||++|+|. ..|+.++++++|||+.|||...+.|+|+++||.|+|||+|.|+||+
T Consensus 113 ~sv~~~v~v~ntL~~~~i~~fGteeqK~~~~P~-~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~ 191 (398)
T KOG0139|consen 113 ASVGVIVDVQNTLYLPLIIQFGTEEQKEKYLPK-LTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNA 191 (398)
T ss_pred ccceeEEEecccccchHHHHhCcHHHHhhhcch-hhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCC
Confidence 999999999988999999999999999977776 5688899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|+|.+++..+++++++|+||+++||+++..+.|++|||++.++.++||||+||.+++||+.|. |+++.
T Consensus 192 ~~A~~~lVfan~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~-----GykyA 266 (398)
T KOG0139|consen 192 GEADWFLVFANADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGK-----GYKYA 266 (398)
T ss_pred cccceEEEEEecChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCc-----chHHH
Confidence 9999999999998888899999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
+..++.+|+.++++++|.++.|+|+++.|+++|.+||++|.+||.+||+||+|.+++|++|.++|++++.-|.+.|...+
T Consensus 267 m~~Ln~gRIgi~AqmlglaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~ke 346 (398)
T KOG0139|consen 267 IEVLNAGRIGIGAQMLGLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKE 346 (398)
T ss_pred HHhcCccceeehhhhhhhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHH
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSE 401 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~ 401 (415)
++|||+++++.|..++..|+|++||.||++|+|.+|||||++...|++|+++
T Consensus 347 AAMAKl~ase~A~~~t~qCiq~lGG~Gyt~d~paek~yRDarI~~IyeGtsn 398 (398)
T KOG0139|consen 347 AAMAKLYASEVATKTTHQCIQWLGGVGYTKDFPAEKFYRDARIGEIYEGTSN 398 (398)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcccccccccHHHHhhhceeeeeecCCCC
Confidence 9999999999999999999999999999999999999999999999999863
No 2
>KOG0140 consensus Medium-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.4e-81 Score=554.42 Aligned_cols=377 Identities=37% Similarity=0.615 Sum_probs=367.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
+.-++++++++++.+++|+++++-|.+.++|+.+.||. +++++..++||....+|++|||.|++..+.+.+.|+|+++
T Consensus 25 sf~L~e~qke~q~~A~kFa~~e~~P~aae~Dk~ge~P~--~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayG 102 (408)
T KOG0140|consen 25 SFGLTEDQKEFQEAARKFAKDEMIPNAAEYDKSGEFPW--EIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYG 102 (408)
T ss_pred ccCcchHHHHHHHHHHHHHHHhhccchhhhcccCCCcH--HHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHcc
Confidence 45667888899999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccC
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~ 188 (415)
|.++......|. ++.++|..+|+++||++||++++....++..++|||++|||+.++.|+|++.||.|+|||.|.||||
T Consensus 103 Ctg~~~~I~~~~-l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg 181 (408)
T KOG0140|consen 103 CTGIQTAISIHN-LAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITG 181 (408)
T ss_pred chhHHHHHhccc-hhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeec
Confidence 999998888887 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCC---CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcch
Q 014993 189 GPVAQTLVVYAKTDIK---AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (415)
Q Consensus 189 ~~~ad~~~v~a~~~~~---~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g 265 (415)
+.+|+|++|++|++++ ++.++++.|+|+.++||++..+...+||.|.+++..|+|+||+||.+|+||.++. |
T Consensus 182 ~G~anwyfVlaRtd~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~-----G 256 (408)
T KOG0140|consen 182 AGHANWYFVLARTDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGA-----G 256 (408)
T ss_pred CCccceEEEEEecCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCc-----c
Confidence 9999999999999886 5567899999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 014993 266 VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 345 (415)
Q Consensus 266 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~ 345 (415)
+...+..++-.|..+++.++|++++++|++.+|+.+|++||+||.+||.+|.+||||++.++.+|.+++++++.+|++..
T Consensus 257 FkvAm~~fd~tRp~vAa~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~ 336 (408)
T KOG0140|consen 257 FKVAMGGFDKTRPNVAAGALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRR 336 (408)
T ss_pred ceehhhhccCCCCchhhhhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 346 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 346 ~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
....++++|.++++.+.+++..|+|++||.||..|+|+++++||++.++|++||++|+|..|+|.|+.
T Consensus 337 ~sy~aSiAK~fA~D~an~~at~AvQifGG~Gfn~eYpVeklmRDaki~QIyEGTsqiqRlvIsR~ll~ 404 (408)
T KOG0140|consen 337 NSYYASIAKLFATDTANQAATNAVQIFGGNGFNKEYPVEKLMRDAKIYQIYEGTSQIQRLVISRSLLQ 404 (408)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhccCCccccccHHHHHhhhhhhHhhhchHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999986
No 3
>KOG0141 consensus Isovaleryl-CoA dehydrogenase [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=100.00 E-value=4.9e-81 Score=554.43 Aligned_cols=378 Identities=72% Similarity=1.151 Sum_probs=367.2
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++..|++++++|+.+++.|.+.++|+.+.|+..+++|++|.++|++|++.|++|||.|+++...++++||++|+.+.
T Consensus 41 ~~~e~~~~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~ 120 (421)
T KOG0141|consen 41 LSDEQDQLRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGG 120 (421)
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCC
Confidence 45666699999999999999999999999999987779999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 191 (415)
++..++.|..+|..-|...|+++|+++|+|.+.+|+.++++++|||++|||+..+.+.|+++|++|+|||.|.||||++.
T Consensus 121 v~lsygaHSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~ 200 (421)
T KOG0141|consen 121 VALSYGAHSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPD 200 (421)
T ss_pred cccccccccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC--CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 192 AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 192 ad~~~v~a~~~~~--~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
||.++|.|+++.. ++..|+++|+|++..||++..+..+++|||++.+++++|+|++||+.+++|.++. |+.++
T Consensus 201 advliVyAkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enk-----GvYvl 275 (421)
T KOG0141|consen 201 ADVLIVYAKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENK-----GVYVL 275 (421)
T ss_pred CcEEEEEEecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCc-----eEEEE
Confidence 9999999999876 5678999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
+..++..|+.+++..+|++++++|.+..|+++|++||++|+.||.+|+++|||++.+.+.|+.+|..++..|.+.-....
T Consensus 276 MsgLd~ERLvla~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kd 355 (421)
T KOG0141|consen 276 MSGLDLERLVLAAGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKD 355 (421)
T ss_pred ecCCChhHhhhccCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++.+++|++|.+.+|+-+|+|++||.||++++|..|++||++.+.|..||++|.|..|+|.|.+.
T Consensus 356 cag~il~aaE~~tqVald~iQ~~GGnGYineyp~gr~lrDAklyeIgaGTsEirr~lIgRel~~e 420 (421)
T KOG0141|consen 356 CAGVILYAAEKATQVALDAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRLLIGRELNKE 420 (421)
T ss_pred hhhhhhhHhhhhHHHHHHHHhhccCcccccccchhhhhhhceeeeccCChHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998753
No 4
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.1e-69 Score=537.23 Aligned_cols=381 Identities=91% Similarity=1.445 Sum_probs=356.3
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|.+.+.|+.+.+|...++|++|++.||+++.+|++|||.|+++.+++.++|++++.|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~ 103 (404)
T PLN02519 24 LLFDDTQLQFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRAS 103 (404)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhc
Confidence 44567777999999999999999988888988889973237999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++++.+|...+...+..+|+++|+++|+|++.+|+.++++++|||++|+|...+.|++++++|||+|||+|.|+|++
T Consensus 104 ~s~a~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a 183 (404)
T PLN02519 104 GSVGLSYGAHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNG 183 (404)
T ss_pred ccHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCC
Confidence 99999888776555667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|.+++++++++.++++|+||++.|||++.++|+++|++++++++|.|+||+||+++++|.++. |+...
T Consensus 184 ~~ad~~~v~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~-----G~~~~ 258 (404)
T PLN02519 184 PVAQTLVVYAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGK-----GVYVM 258 (404)
T ss_pred CcCCEEEEEEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCc-----cHHHH
Confidence 9999999999987554556789999999999999999999999999999999999999999999998887 88877
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++..|+.+++.++|+++++++.+++|+++|.+||+|+.++|.+|+++++|.++++++|++++++++.++.+.....+
T Consensus 259 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~ 338 (404)
T PLN02519 259 MSGLDLERLVLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKD 338 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999987655667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhcC
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQQ 415 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~~ 415 (415)
.+.+|+++++.+.+++..++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++++
T Consensus 339 ~~~ak~~~~~~a~~~~~~a~~i~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~e~~~~~i~~~~~~~~ 404 (404)
T PLN02519 339 CAGVILCAAERATQVALQAIQCLGGNGYINEYPTGRLLRDAKLYEIGAGTSEIRRMLIGRELFKEE 404 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCceecCCChHHHHHHhhhcceeeCCHHHHHHHHHHHHHhhcC
Confidence 888999999999999999999999999999999999999999999999999999999999999875
No 5
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.3e-68 Score=527.02 Aligned_cols=372 Identities=34% Similarity=0.551 Sum_probs=347.0
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.|+.+.+|. ++|++|.+.||+++ +|++|||.|+++.+...++|+|++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~ 87 (386)
T cd01151 11 DLLTEEERAIRDTAREFCQEELAPRVLEAYREEKFDR--KIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVD 87 (386)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCccHHHHHHhCCCCH--HHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhC
Confidence 3345666699999999999999998878888888999 99999999999999 99999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++.+.+|..++...+..+|+++|+++|++++++|+.++++++|||++|||...+.|+|++++|||+|||+|.|+|++
T Consensus 88 ~s~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~ 167 (386)
T cd01151 88 SGYRSFMSVQSSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNS 167 (386)
T ss_pred hhHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCC
Confidence 99888777765456667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|+++++++ .++.+|+||++.|||++.+.|+++|++++++++|+|+||+||++++++. +. |+...
T Consensus 168 ~~Ad~~lv~ar~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~-----g~~~~ 238 (386)
T cd01151 168 PIADVFVVWARNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AE-----GLRGP 238 (386)
T ss_pred CcCCEEEEEEEECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cc-----cHHHH
Confidence 999999999998642 3678999999999999999999999999999999999999999999985 34 77777
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...+...|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.+|++.....+
T Consensus 239 ~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~ 318 (386)
T cd01151 239 FKCLNNARYGIAWGALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQ 318 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999987655677
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.+++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 319 ~~~~K~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~G~~~~~~~~i~~~~l~ 382 (386)
T cd01151 319 ISLLKRNNCGKALEIARTAREMLGGNGISDEYHIIRHMVNLESVNTYEGTHDIHALILGRAITG 382 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHhhhcceecCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999999999876
No 6
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=1.1e-68 Score=526.34 Aligned_cols=374 Identities=72% Similarity=1.177 Sum_probs=351.8
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
++++.++++.+++|+++.+.+.+.+.|+++.+|. +.|+.|++.||+++.+|++|||.|+++.+++.++|+|+++|+++
T Consensus 3 ~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~ 80 (376)
T cd01156 3 DDEIEMLRQSVREFAQKEIAPLAAKIDRDNEFPR--DLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSV 80 (376)
T ss_pred CHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhH
Confidence 4556699999999999999998888888888999 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCC
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~a 192 (415)
++.+..|...+...|..+|+++|+++|++++++|+.++++++|||.+|||...+.+++++++|||+|||+|.|+|++..|
T Consensus 81 ~~~~~~~~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 160 (376)
T cd01156 81 ALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDA 160 (376)
T ss_pred HHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcC
Confidence 98877776455667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhh
Q 014993 193 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSG 272 (415)
Q Consensus 193 d~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~ 272 (415)
|+++|+++++++++..++++|+||++.|||++.+.|+++|++++++++|.|+||+||+++++|..+. |+......
T Consensus 161 ~~~lv~a~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~-----g~~~~~~~ 235 (376)
T cd01156 161 DTLVVYAKTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENK-----GVYVLMSG 235 (376)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCc-----hHHHHHHH
Confidence 9999999987554456789999999999999998999999999999999999999999999998887 88888888
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhH
Q 014993 273 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 352 (415)
Q Consensus 273 ~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ 352 (415)
++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|+++++|.++++++|++++++++.+|.+.......+.
T Consensus 236 ~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ 315 (376)
T cd01156 236 LDYERLVLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAG 315 (376)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987655567888
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 353 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 353 ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|++++++..|++.++|
T Consensus 316 ~k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~~~~gt~~~~~~~i~~~~~~ 376 (376)
T cd01156 316 VILYAAEKATQVALDAIQILGGNGYINDYPTGRLLRDAKLYEIGAGTSEIRRMVIGRELFK 376 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999998875
No 7
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1.2e-68 Score=525.99 Aligned_cols=372 Identities=28% Similarity=0.473 Sum_probs=343.1
Q ss_pred ChHHHHHHHHHHHHHHhhcc-CcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 32 FDDTQLQFKESVGQFARENI-APRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
+++++.+|++.+++|+++++ .+...+.|+.+.||. ++|++|++.||+++.+|++|||.|+++.+++.++++|+++|+
T Consensus 5 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~ 82 (380)
T PRK03354 5 LNDEQELFVAGIRELMASENWEAYFAECDRDSVYPE--RFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGA 82 (380)
T ss_pred CCHHHHHHHHHHHHHHHhccCChhHHHHHhhCCCCH--HHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCc
Confidence 45666699999999999886 556677888889999 999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~ 190 (415)
++++++.++. ....+..+|+++|+++|++++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|+|++.
T Consensus 83 s~~~~~~~~~--~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~ 160 (380)
T PRK03354 83 PTYVLYQLPG--GFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSA 160 (380)
T ss_pred chHHHHHhcc--cHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCC
Confidence 9887655542 24567788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHH
Q 014993 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMM 270 (415)
Q Consensus 191 ~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~ 270 (415)
+|||++|.++++.+++..++++|+||++.|||++. +|+++|++++++++|.|+||+||+++++|.++. |+....
T Consensus 161 ~ad~~~v~a~~~~~~~~~~~~~~lv~~~~~gv~~~-~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~-----g~~~~~ 234 (380)
T PRK03354 161 YTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVT-KLEKLGLRMDSCCEITFDDVELDEKDMFGREGN-----GFNRVK 234 (380)
T ss_pred cCCEEEEEEEcCCCCCCCceeEEEEECCCCceEec-cccccCCCCCCeEEEEEccEEecHHHcCCCCCh-----HHHHHH
Confidence 99999999998544344567899999999999985 799999999999999999999999999998887 887777
Q ss_pred hhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 014993 271 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDC 350 (415)
Q Consensus 271 ~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~ 350 (415)
..++..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++++.......
T Consensus 235 ~~~~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~ 314 (380)
T PRK03354 235 EEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDA 314 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999998876556778
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 351 AGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 351 ~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++++++..|++.+++
T Consensus 315 ~~aK~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (380)
T PRK03354 315 AMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLK 377 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceecCCChHHHHHHHhhhhhccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998875
No 8
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=1.1e-68 Score=526.60 Aligned_cols=373 Identities=37% Similarity=0.564 Sum_probs=346.2
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
++++.++++.+++|+++.+.|...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+++.++|+|++.|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~ 79 (378)
T cd01157 2 TEQQKEFQETARKFAREEIIPVAAEYDKSGEYPW--PLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGV 79 (378)
T ss_pred CHHHHHHHHHHHHHHHHhcccchHHHHhhCCCCH--HHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHH
Confidence 3555699999999999999998888898889999 99999999999999999999999999999999999999999998
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCC
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~a 192 (415)
++.+..+. ++...+..+|+++||++||+++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|+|++..|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 158 (378)
T cd01157 80 QTAIEANS-LGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKA 158 (378)
T ss_pred HHHHHhhh-hhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccC
Confidence 87665553 55556677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCC---CCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 193 QTLVVYAKTDIKAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 193 d~~~v~a~~~~~~~---~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
|+++|+++++++.+ ..++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++++.++. |+...
T Consensus 159 d~~lv~a~~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~-----g~~~~ 233 (378)
T cd01157 159 NWYFLLARSDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGA-----GFKIA 233 (378)
T ss_pred CEEEEEEEeCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCc-----hHHHH
Confidence 99999999864322 35789999999999999999999999999999999999999999999998887 88888
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...+...|+.+++.++|+++++++.+++|+++|.|||+||+++|.+|++|++|.++++++|++++++++.+|.+......
T Consensus 234 ~~~~~~~r~~~aa~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~ 313 (378)
T cd01157 234 MGAFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYY 313 (378)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999877544556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.+++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 314 ~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~~~~ 377 (378)
T cd01157 314 ASIAKAFAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDAKIYQIYEGTSQIQRLIISREHLG 377 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCHHHHHHHHHhhceecCCHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999999999999999999999999999999998875
No 9
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=6.1e-69 Score=526.49 Aligned_cols=367 Identities=25% Similarity=0.376 Sum_probs=331.6
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchh--hhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAA--NIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
+++++.++++.+++|+++.+.+... ..|+.+.||. ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++.+
T Consensus 4 ~~~eq~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~ 81 (378)
T TIGR03203 4 LSEEQRLLKESVEGLLKTSYDFDSRKKYQKEKGGWSK--AVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKAL 81 (378)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHHHHHHHhccCCCCH--HHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcc
Confidence 3566669999999999998887543 3467788999 99999999999999999999999999999999999999987
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
.+.+. +. +..++..++..+|+++||++|||++++|+.++++++|||+.|||...+.|++++++|+|+|||+|.|||++
T Consensus 82 ~~~~~-~~-~~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a 159 (378)
T TIGR03203 82 VLEPY-LA-TVVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNG 159 (378)
T ss_pred cchHH-HH-HHHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCC
Confidence 65442 22 22244567888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCC-CCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHH
Q 014993 190 PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~-~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~ 268 (415)
..||+++|++++++++ ++.++++|+||++.|||++.+.++++|+ ++++|+||||+||+++++|.++. |+..
T Consensus 160 ~~Ad~~lv~ar~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~-----g~~~ 231 (378)
T TIGR03203 160 ETADTLIVTARTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPEN-----ALPL 231 (378)
T ss_pred ccCCEEEEEEecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcch-----HHHH
Confidence 9999999999986432 4568999999999999999766666664 56899999999999999998888 9999
Q ss_pred HHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CC
Q 014993 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VD 346 (415)
Q Consensus 269 ~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~--~~ 346 (415)
+...++..|+.+++.++|+++++++.+++|+++|+|||+||++||.|||+|++|.++++++|++++++++..+.+. +.
T Consensus 232 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~ 311 (378)
T TIGR03203 232 IERVVDDARAALCAEAVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKER 311 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887532 34
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHH
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 410 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~ 410 (415)
...++++|+++++.+.++++.|+|+|||+||++++++++||||++.+.+.+|++++++..+++.
T Consensus 312 ~~~~a~aK~~a~e~a~~va~~aiqi~Gg~G~t~e~~~~~~~r~a~~~~~~~G~~~~~~~~~~~~ 375 (378)
T TIGR03203 312 ANAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIEHTFGDTDFHLSRVSAA 375 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccceeecccchHHHHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999884
No 10
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=2.7e-68 Score=523.06 Aligned_cols=373 Identities=36% Similarity=0.580 Sum_probs=350.1
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
+|++.++++.+++|+++++.|.+.+.|+++.+|+ +.|++|.+.||+++.+|++|||.|+++.+.+.++|+|++.|+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~ 79 (375)
T cd01162 2 NEEQRAIQEVARAFAAKEMAPHAADWDQKKHFPV--DVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVST 79 (375)
T ss_pred CHHHHHHHHHHHHHHHHhCCcchhhHHhhCCCCH--HHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhH
Confidence 4555699999999999999998888898899999 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCC
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~a 192 (415)
++.+.+|. ++...+..+|+++|+++|++++.+|+.++++++|||++|||...+.+++++++|||+|||+|.|||++..|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a 158 (375)
T cd01162 80 AAYISIHN-MCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDS 158 (375)
T ss_pred HHHHHHhh-hHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCC
Confidence 88777776 66677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhh
Q 014993 193 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSG 272 (415)
Q Consensus 193 d~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~ 272 (415)
|+++|+++++++ +..++++|+||++.|||++.+.|+++|++++++++|.||||+||+++++|.++. |+......
T Consensus 159 d~~~v~a~~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~-----g~~~~~~~ 232 (375)
T cd01162 159 DVYVVMARTGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQ-----GFGIAMAG 232 (375)
T ss_pred CEEEEEEEecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCc-----hHHHHHHH
Confidence 999999997643 345688999999999999999999999999999999999999999999998887 88887888
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cchhhh
Q 014993 273 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCA 351 (415)
Q Consensus 273 ~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~~~~ 351 (415)
+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|+++++|.+++++++++++.+++.+|++.+ ....++
T Consensus 233 l~~~r~~~aa~~lG~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~ 312 (375)
T cd01162 233 LNGGRLNIASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCA 312 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998753 345678
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 352 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 352 ~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++|+++++.+.++++.++|+|||.||+++++++|+|||++..++++|++++++..+++.++++
T Consensus 313 ~ak~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~~~~~~~~~ 375 (375)
T cd01162 313 MAKRFATDECFDVANQALQLHGGYGYLKDYPVEQYVRDLRVHQILEGTNEIMRLIIARALLTR 375 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999999999864
No 11
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.5e-68 Score=522.74 Aligned_cols=368 Identities=31% Similarity=0.503 Sum_probs=342.0
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
++++.++++.+++|+++.+.|...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|++++.|+++
T Consensus 2 t~~~~~l~~~~~~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~ 79 (372)
T TIGR03207 2 NEDLQALADTARRFARERIAPGFKERDKTRVLDR--ELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSM 79 (372)
T ss_pred CHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccH
Confidence 3556699999999999999998888888889999 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCC
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~a 192 (415)
++....+. ++...+..+|+++|+++|++++++|+.++++++|||..|||...+.|++++++|||+|||+|.|||++..|
T Consensus 80 ~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~a 158 (372)
T TIGR03207 80 SYVNLLAS-LNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQA 158 (372)
T ss_pred HHHHHhhh-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcC
Confidence 87654443 55567888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCC-CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHh
Q 014993 193 QTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMS 271 (415)
Q Consensus 193 d~~~v~a~~~~~-~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~ 271 (415)
|+++|+++++++ .+..++++|+||++.|||++ .+|+++|++++++++|.|+||+||+++++|.++. |+.....
T Consensus 159 d~~lv~a~~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~-----g~~~~~~ 232 (372)
T TIGR03207 159 DAAVVFARTGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQ-----GFVQVMQ 232 (372)
T ss_pred CEEEEEEEcCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCCh-----hHHHHHH
Confidence 999999998643 23457889999999999997 4799999999999999999999999999998887 8888888
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 014993 272 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 351 (415)
Q Consensus 272 ~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~ 351 (415)
.++..|+.+++.++|+++++++.+++|+++|+|||+||.++|.||+++++|.++++++|++++++++.+|.+.+....++
T Consensus 233 ~l~~~r~~~a~~~~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~ 312 (372)
T TIGR03207 233 GFDFSRALIGLQVLAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAA 312 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988765556788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHH
Q 014993 352 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRA 410 (415)
Q Consensus 352 ~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~ 410 (415)
++|+++++.+.++++.++|+|||.||+++ +++|+|||++...+++|+++++++.|++.
T Consensus 313 ~aK~~~~~~a~~v~~~a~~v~Gg~g~~~~-~l~r~~rd~~~~~i~~Gt~~~~~~~i~~~ 370 (372)
T TIGR03207 313 MCKWWAPKLAYDVIHQCLLTHGHGGYDRG-DMEQRLRDVLGFQIGDGTAQIMKTIIARH 370 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCCc-hHHHHHhHhhheeecCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999 99999999999999999999999999873
No 12
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.1e-67 Score=518.65 Aligned_cols=369 Identities=36% Similarity=0.675 Sum_probs=344.5
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchh
Q 014993 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (415)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 114 (415)
++.++++.+++|+.+.+.|.+.++|+++.+|+ +.|++|+++||+++.+|++|||.|+++.++..++|++++.+.+ ++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~-~~ 78 (372)
T cd01160 2 EHDAFRDVVRRFFAKEVAPFHHEWEKAGEVPR--EVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGS-GP 78 (372)
T ss_pred hHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcch-HH
Confidence 44599999999999999998888898889999 9999999999999999999999999999999999999996554 66
Q ss_pred HHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCE
Q 014993 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (415)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~ 194 (415)
.+.+|...+...+..+|+++|+++|++++.+|+.++++++|||.+|||...+.|++++++|||+|||+|.||||+..||+
T Consensus 79 ~~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~ 158 (372)
T cd01160 79 GLSLHTDIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADV 158 (372)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCE
Confidence 66666545666788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCC-CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhc
Q 014993 195 LVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGL 273 (415)
Q Consensus 195 ~~v~a~~~~~-~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~ 273 (415)
++|.++++++ +++.++++|+||++.|||++.++|+++||+++++++|+|+||+||++++||.++. |+......+
T Consensus 159 ~~v~a~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~-----g~~~~~~~~ 233 (372)
T cd01160 159 VIVVARTGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENK-----GFYYLMQNL 233 (372)
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCc-----hHHHHHHHH
Confidence 9999998654 2345789999999999999988999999999999999999999999999998887 888888888
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHH
Q 014993 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGV 353 (415)
Q Consensus 274 ~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~a 353 (415)
..+++.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+......++++
T Consensus 234 ~~~~~~~aa~~lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~a 313 (372)
T cd01160 234 PQERLLIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMA 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998876556678899
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 014993 354 ILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 354 k~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l 411 (415)
|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+
T Consensus 314 K~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~gt~~~~~~~i~~~~ 371 (372)
T cd01160 314 KYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDARVQPIYGGTTEIMKELISRQM 371 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHhhcccccCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999875
No 13
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-67 Score=517.96 Aligned_cols=371 Identities=30% Similarity=0.481 Sum_probs=341.3
Q ss_pred ChHHHHHHHHHHHHHHhhccC-cchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 32 FDDTQLQFKESVGQFARENIA-PRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
+++++..+++.+++|+.+.+. +...++|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+++.++|++++.|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~ 82 (381)
T PRK12341 5 LTEEQELLLASIRELITRNFPEEYFRTCDENGTYPR--EFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGA 82 (381)
T ss_pred CCHHHHHHHHHHHHHHHHhcCchhHHHHHHhCCCCH--HHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcCh
Confidence 355666999999999999886 46777888889999 999999999999999999999999999999999999999998
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhh-hcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKL-ISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l-~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+ .+++ .+. ++...+..+|+++||++|++++ .+|+.++++++|||+.|||...+.+++++++|||+|||+|.|+||+
T Consensus 83 ~-~~~~-~~~-~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~ 159 (381)
T PRK12341 83 P-AFLI-TNG-QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGA 159 (381)
T ss_pred h-HHHH-hhh-hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCC
Confidence 8 3443 232 4455677899999999999998 5999889999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCC-CCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHH
Q 014993 190 PVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~-~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~ 268 (415)
+.||+++|.+++++++ +..++++|+||++.|||++ .+|+++|++++++++|+|+||+||++++||.++. |+..
T Consensus 160 ~~Ad~~~v~a~~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~-----g~~~ 233 (381)
T PRK12341 160 KEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGM-----GFLN 233 (381)
T ss_pred ccCCEEEEEEEcCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCCh-----HHHH
Confidence 9999999999986432 2357899999999999999 5799999999999999999999999999998887 8887
Q ss_pred HHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch
Q 014993 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK 348 (415)
Q Consensus 269 ~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~ 348 (415)
....++..|+.++++++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++++++.+|++.+...
T Consensus 234 ~~~~~~~~r~~~aa~~lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~ 313 (381)
T PRK12341 234 VMYNFEMERLINAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRT 313 (381)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999988766566
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 349 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 349 ~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.++++|+++++.+.++++.+++++||.||.++++++|+|||++.+.+++|+++++++.+++.+++
T Consensus 314 ~~~~aK~~~~~~a~~v~~~~~~~~Gg~g~~~~~~l~r~~RD~~~~~~~~g~~~~~~~~i~~~~~~ 378 (381)
T PRK12341 314 SAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYIAGRQILK 378 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHhhcceecCCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999886
No 14
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2e-67 Score=522.05 Aligned_cols=372 Identities=40% Similarity=0.681 Sum_probs=346.1
Q ss_pred CChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
.+++++.++++.+++|+.+++.|.+.+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+...++|++++.|+
T Consensus 36 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~ 113 (410)
T PTZ00461 36 NPTPEHAALRETVAKFSREVVDKHAREDDINMHFNR--DLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDP 113 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCc
Confidence 345566699999999999999998888888889999 999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCC-EEEEEeEeecccCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDG-GYIINGNKMWCTNG 189 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~-g~~LnG~k~~vs~~ 189 (415)
++++.+..|..++...+..+|+++|+++|++.+++|+.++++++|||++|||...+.|++++++| ||+|||+|.||||+
T Consensus 114 s~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a 193 (410)
T PTZ00461 114 GFCLAYLAHSMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNG 193 (410)
T ss_pred hHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCC
Confidence 88776666653455667788999999999999999999999999999999999999999999865 79999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|.+++++ ++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++||.++. |+...
T Consensus 194 ~~Ad~~lv~a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~-----g~~~~ 263 (410)
T PTZ00461 194 TVADVFLIYAKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGK-----GMVGM 263 (410)
T ss_pred ccCCEEEEEEEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCc-----cHHHH
Confidence 99999999999742 578999999999999999999999999999999999999999999998887 88877
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++.+++.++.+.+....
T Consensus 264 ~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~ 343 (410)
T PTZ00461 264 MRNLELERVTLAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLG 343 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999988876555567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++++|+++++.+.++++.++|+|||+||+++++++|+|||++.+.+.+|++++++..|++.+++.
T Consensus 344 ~~~aK~~a~~~a~~v~~~a~qv~Gg~G~~~~~~l~r~~Rda~~~~i~~Gt~e~~~~~i~~~~~~~ 408 (410)
T PTZ00461 344 SDAAKLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLLEIGGGTIEAHHKNITKDLLKG 408 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHHhhheeccCHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999999999999999999999999999999988763
No 15
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=4.3e-67 Score=519.44 Aligned_cols=374 Identities=28% Similarity=0.466 Sum_probs=344.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 014993 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (415)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~ 107 (415)
.+..+++++..+++.+++|+.+++.|...+.++...+|. ++|++|.+.||+++.+ ++|||.|+++.+++.++|+|++
T Consensus 25 ~~~~~t~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~ 101 (412)
T PLN02526 25 FDDLLTPEEQALRKRVRECMEKEVAPIMTEYWEKAEFPF--HIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVAR 101 (412)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcccchHHHHHhCCCCH--HHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHh
Confidence 445456667799999999999999988766666778998 9999999999999999 9999999999999999999999
Q ss_pred ccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeeccc
Q 014993 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCT 187 (415)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs 187 (415)
.|+++++.+..|..++...+..+|+++|+++|++++++|+.++++++|||+.|||...+.|++++++|||+|||+|.|+|
T Consensus 102 ~~~s~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs 181 (412)
T PLN02526 102 VDASCSTFILVHSSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIG 181 (412)
T ss_pred hCchHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeec
Confidence 99998776666654566678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHH
Q 014993 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267 (415)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~ 267 (415)
|+..||+++|+++++++ .++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++++.. . ++.
T Consensus 182 ~~~~Ad~~lv~a~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~-~-----~~~ 252 (412)
T PLN02526 182 NSTFADVLVIFARNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGV-N-----SFQ 252 (412)
T ss_pred CCCccCEEEEEEEeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCc-c-----cHH
Confidence 99999999999998542 36789999999999999999999999999999999999999999999754 2 566
Q ss_pred HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 014993 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP 347 (415)
Q Consensus 268 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~ 347 (415)
.....+..+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|+++++|.++++++|++++++++.+|.+.+..
T Consensus 253 ~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~ 332 (412)
T PLN02526 253 DTNKVLAVSRVMVAWQPIGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTP 332 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCh
Confidence 66678889999999999999999999999999999999999999999999999999999999999999999998876556
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 348 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 348 ~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
..++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.|++.+++
T Consensus 333 ~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~RD~~~~~~~~G~~ev~~~~i~~~~l~ 398 (412)
T PLN02526 333 GHASLGKAWITKKARETVALGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINALVTGREITG 398 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcCHHHHHHhcccceEecCCHHHHHHHHHHHHHhc
Confidence 678899999999999999999999999999999999999999999999999999999999999976
No 16
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=4.9e-67 Score=519.32 Aligned_cols=374 Identities=34% Similarity=0.557 Sum_probs=344.6
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|. ++|+.+.+|. ++|++|++.||+++.+|++|||.|+++.++..++|++++ |
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~~~~~--~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~-~ 99 (409)
T cd01161 25 EEQTEELNMLVGPVEKFFEEVNDPA--KNDQLEKIPR--KTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGM-D 99 (409)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCch--hhccccCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhh-C
Confidence 4446677799999999999998885 3567778998 999999999999999999999999999999999999999 9
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEE--eCCEEEEEeEeeccc
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADR--VDGGYIINGNKMWCT 187 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~--~~~g~~LnG~k~~vs 187 (415)
+++++.+..|...+...+..+|+++|+++|++++++|+.++++++|||+.|||...+.+++++ ++|||+|||+|.|+|
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs 179 (409)
T cd01161 100 LGFSVTLGAHQSIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWIT 179 (409)
T ss_pred hHHHHHHHHhhhhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeec
Confidence 999888877764555567789999999999999999999999999999999999999999998 456799999999999
Q ss_pred CCCCCCEEEEEEEeCC--CCC--CCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCc
Q 014993 188 NGPVAQTLVVYAKTDI--KAG--SKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (415)
Q Consensus 188 ~~~~ad~~~v~a~~~~--~~~--~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~ 263 (415)
|+..||+++|.+++++ .++ ..++++|+||++.|||++.++|+++|++++++++|+|+||+||+++++|.++.
T Consensus 180 ~~~~Ad~~lv~ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~---- 255 (409)
T cd01161 180 NGGIADIFTVFAKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGD---- 255 (409)
T ss_pred CCCcCCEEEEEEEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCCh----
Confidence 9999999999999752 111 35788999999999999999999999999999999999999999999998887
Q ss_pred chHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 014993 264 FGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 343 (415)
Q Consensus 264 ~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~ 343 (415)
|+......++.+|+.+++.++|+++++++.+++|+++|++||+||.++|.+|++|++|.++++++|++++++++.+|++
T Consensus 256 -g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~ 334 (409)
T cd01161 256 -GFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRG 334 (409)
T ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 8888888999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CC--CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 344 KV--DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 344 ~~--~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.. ....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.|++.+++
T Consensus 335 ~~~~~~~~~~~aK~~a~~~a~~v~~~a~~~~Gg~G~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~ia~~~l~ 406 (409)
T cd01161 335 LKAEYQIEAAISKVFASEAAWLVVDEAIQIHGGMGFMREYGVERVLRDLRIFRIFEGTNEILRLFIALTGLQ 406 (409)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCcHHHHHHhhhcceeecCHHHHHHHHHHHHHhh
Confidence 53 45678999999999999999999999999999999999999999999999999999999999999876
No 17
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=9.3e-66 Score=505.20 Aligned_cols=372 Identities=45% Similarity=0.737 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchh
Q 014993 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (415)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 114 (415)
++.++++.+++|+.+++.+.+.+.|+++.+|. +.|+.|++.||+++.+|++|||.|.++.+++.++|++++.|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~ 79 (373)
T cd01158 2 EHQMIRKTVRDFAEKEIAPLAAEMDEKGEFPR--EVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAV 79 (373)
T ss_pred hHHHHHHHHHHHHHHhcccchHHHhhcCCCCH--HHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHH
Confidence 45599999999999889988888888888999 9999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCE
Q 014993 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (415)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~ 194 (415)
++.+|...+...+..+++++|+++|++++.+|+.++++++|||.+||+...+.+++++++|||+|||+|.|+||+..||+
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~ 159 (373)
T cd01158 80 IVSVHNSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADF 159 (373)
T ss_pred HHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCE
Confidence 98888655667788999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhch
Q 014993 195 LVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLD 274 (415)
Q Consensus 195 ~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~ 274 (415)
++|.++++++++..++++|+||++.|||++.++|+++|++++++++|.|+||+||++++++.++. |+......+.
T Consensus 160 ~lv~a~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~-----g~~~~~~~~~ 234 (373)
T cd01158 160 YIVFAVTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGE-----GFKIAMQTLD 234 (373)
T ss_pred EEEEEEcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCc-----hHHHHHHHHH
Confidence 99999976544456789999999999999999999999999999999999999999999998887 8888778888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHH
Q 014993 275 LERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVI 354 (415)
Q Consensus 275 ~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak 354 (415)
..|+..++.++|+++++++.+++|+++|.+||+|+.++|.+|++++++.+.++++|++++.+++.++.+.+....++++|
T Consensus 235 ~~r~~~~a~~lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k 314 (373)
T cd01158 235 GGRIGIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAK 314 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988765567788999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 355 LCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 355 ~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+++++.+.++++.+++++||.||+++++++|+|||++.+.+++|+++++++.++++++|
T Consensus 315 ~~~~~~a~~~~~~~~~~~G~~g~~~~~~l~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 373 (373)
T cd01158 315 LFASEVAMRVTTDAVQIFGGYGYTKDYPVERYYRDAKITEIYEGTSEIQRLVIAKHLLK 373 (373)
T ss_pred HHHHHHHHHHHHHHHHhhcCccCCCCChHHHHHHHhhhccccCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 18
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-65 Score=529.18 Aligned_cols=392 Identities=22% Similarity=0.329 Sum_probs=340.2
Q ss_pred cchhhhhhhccccccCCCCCCCCCCCChHHHHHHHHH-HHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCC
Q 014993 6 GARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKES-VGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~ 84 (415)
++.+|.+.+|.-..+...-+..|...+++++..+++. +++|+. .+ ....+.++.+.+|+ ++|+.|++.||+++.+
T Consensus 53 g~~~~~~~lF~G~~~~~~l~~~p~~~Ls~ee~~~~d~~v~~l~~-~~-~~~~~~~~~~~~P~--e~w~~L~e~G~~gl~I 128 (777)
T PRK09463 53 GTVWWEGELFSGKPDWKKLLNYPKPTLTAEEQAFLDGPVEELCR-MV-NDWQITHELADLPP--EVWQFIKEHGFFGMII 128 (777)
T ss_pred CCchhhhhhcCCCCChHHhcCCCCCCCCHHHHHHHHHHHHHHHH-HH-HHHHHhccccCCCH--HHHHHHHHCCCCcCCC
Confidence 5667888888654544444544444344444488886 888754 22 11222233468999 9999999999999999
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHH-HHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC
Q 014993 85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 163 (415)
Q Consensus 85 P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~ 163 (415)
|++|||.|++..+.+.++|++++.+++++..+..|++++ ..+|..+|+++||++|||++++|+.+.|+++|||++|||.
T Consensus 129 PeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp~La~Ge~i~afAlTEP~aGSDa 208 (777)
T PRK09463 129 PKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLPRLARGEEIPCFALTSPEAGSDA 208 (777)
T ss_pred chhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCcCCCc
Confidence 999999999999999999999999988877666665454 3478899999999999999999999999999999999999
Q ss_pred CCceeE-----EEEeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEecCCCCeeeccccc
Q 014993 164 VGMKCK-----ADRVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLD 229 (415)
Q Consensus 164 ~~~~t~-----a~~~~~---g~~LnG~k~~vs~~~~ad~~~v~a~~-~~~-----~~~~~~~~~lV~~~~~Gv~v~~~~~ 229 (415)
..+.|+ ++++|+ ||+|||+|.|||+++.||+++|++++ +++ +++.++++||||++.|||++.+.++
T Consensus 209 a~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~~Git~fLVp~d~pGV~ig~~~~ 288 (777)
T PRK09463 209 GSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKEDLGITCALIPTDTPGVEIGRRHF 288 (777)
T ss_pred ccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCCCceEEEEEECCCCCeEeccccc
Confidence 888754 455666 69999999999999999999999986 332 2356899999999999999999999
Q ss_pred cccCCCCCceeEEEeeeeeCCCCcccCC---CCCCCcchHHHHHhhchHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 014993 230 KLGMRGSDTCELVFENCFVPNENVLGQE---GKGCNSFGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYVRQREQF 305 (415)
Q Consensus 230 ~~Gl~~~~~~~v~f~~v~Vp~~~llg~~---~~~~~~~g~~~~~~~~~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~ 305 (415)
++|++ ..+++++|+||+||.+++||.. +. |+..++..++.+| +.+++.++|+++++++.+++|+++|+||
T Consensus 289 ~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~-----G~~~l~~~L~~gR~i~laA~avG~ar~al~~Av~YA~~R~QF 362 (777)
T PRK09463 289 PLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQ-----GWRMLMECLSVGRGISLPSNSTGGAKLAALATGAYARIRRQF 362 (777)
T ss_pred ccCcc-cccceEEeeeeecCHHHhcccccccCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998 6689999999999999999874 66 9999999999999 8999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCc--chH
Q 014993 306 GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE--YAT 383 (415)
Q Consensus 306 g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~--~~~ 383 (415)
|+||++||.||++||+|.+++++++++.+.+++.+|.+......++++|+++++.+.+++++|+|+|||.||+.+ +++
T Consensus 363 G~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~G~~~~~~~~l 442 (777)
T PRK09463 363 KLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDAMDIHGGKGICLGPNNFL 442 (777)
T ss_pred CCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhchhheeCCCCChH
Confidence 999999999999999999999999999999999999887666788999999999999999999999999999997 899
Q ss_pred HHHHHhhccCcccCChHHHHHHHH
Q 014993 384 GRLLRDAKLYEIGAGTSEIRRMII 407 (415)
Q Consensus 384 ~r~~Rda~~~~~~~G~~~~~~~~i 407 (415)
+|+|||++...+++|+|+++++.+
T Consensus 443 eR~yRdari~~i~eGtn~i~r~~i 466 (777)
T PRK09463 443 ARAYQAAPIAITVEGANILTRSLM 466 (777)
T ss_pred HHHHHhCcchheeCcHHHHHHHHH
Confidence 999999999999999999999876
No 19
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.7e-65 Score=504.70 Aligned_cols=372 Identities=24% Similarity=0.326 Sum_probs=330.5
Q ss_pred HHHHHHHHHHHhhccCcchhhhhccC-------CCCC--cHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 014993 37 LQFKESVGQFARENIAPRAANIDQSN-------SFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (415)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~p~--~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~ 107 (415)
.+|++.+++|+++++.|...++|+.+ .+|+ ..++|++++++||+++.+|++|||.|+++.+++.++|+|++
T Consensus 4 ~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~ 83 (394)
T cd01155 4 QELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGR 83 (394)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhh
Confidence 48999999999999999776666431 1332 12789999999999999999999999999999999999999
Q ss_pred ccc-cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCC-CCCCCCCceeEEEEeCCEEEEEeEeec
Q 014993 108 ASG-SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMW 185 (415)
Q Consensus 108 ~~~-~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~-~gsd~~~~~t~a~~~~~g~~LnG~k~~ 185 (415)
++. +.++....+...+...+..+|+++|+++|++++++|+.++++++|||+ .|||...+.|++++++|||+|||+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~ 163 (394)
T cd01155 84 SFFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWW 163 (394)
T ss_pred hcccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEE
Confidence 863 333222222213345788999999999999999999999999999997 579999999999999999999999999
Q ss_pred ccCCCC--CCEEEEEEEeCCC--CCCCCeEEEEEecCCCCeeeccccccccCCC--CCceeEEEeeeeeCCCCcccCCCC
Q 014993 186 CTNGPV--AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRG--SDTCELVFENCFVPNENVLGQEGK 259 (415)
Q Consensus 186 vs~~~~--ad~~~v~a~~~~~--~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~--~~~~~v~f~~v~Vp~~~llg~~~~ 259 (415)
+||+.+ +|+++|.++++++ +++.++++|+||++.|||++.++|+++|+++ +++++|.|+||+||++++++.++.
T Consensus 164 vs~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~ 243 (394)
T cd01155 164 SSGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGR 243 (394)
T ss_pred EcCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCCh
Confidence 999954 8899999998643 2235789999999999999988999999997 678999999999999999998877
Q ss_pred CCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014993 260 GCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARD 339 (415)
Q Consensus 260 ~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~ 339 (415)
|+......++..|+..++.++|+++++++.+++|+++|.+||+||+++|.+|++|++|.++++++|++++.+++.
T Consensus 244 -----g~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~ 318 (394)
T cd01155 244 -----GFEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHM 318 (394)
T ss_pred -----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCC--CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 340 CDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 340 ~d~~~--~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++++. +....++++|+++++.+.++++.++|+|||+||+++++++|+|||++.+.+++|++++++..|++.++|
T Consensus 319 ~~~~~~~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~~~~~~ia~~~~~ 394 (394)
T cd01155 319 IDTVGNKAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVSQDTPLANMYAWARTLRIADGPDEVHLRSIARMELK 394 (394)
T ss_pred HhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCHHHHHHHHHhhceeecCHHHHHHHHHHHHHhC
Confidence 98753 245678999999999999999999999999999999999999999999999999999999999998864
No 20
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.8e-64 Score=519.88 Aligned_cols=388 Identities=22% Similarity=0.283 Sum_probs=333.8
Q ss_pred cchhhhhhhccccccCCCCCCCCC-CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCC
Q 014993 6 GARSLCASFFTKKQKHSAAFSSTS-LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITA 84 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~ 84 (415)
++.+|.+++|.-+.+...-++.+. .+++|++..+.+.++++++ .+.+ ....++.+.+|+ ++|+.|++.||+++.+
T Consensus 52 ~~~~~~~~lf~G~~~~~~l~~~p~~~l~~eeq~fl~~~v~~l~~-~~~e-~~~~~~~~~~P~--evw~~Lae~Gl~gl~I 127 (774)
T PRK13026 52 GDVWWEGELFSGKPDWQKLHSYPKPTLTAEEQAFIDNEVETLLT-MLDD-WDIVQNRKDLPP--EVWDYLKKEGFFALII 127 (774)
T ss_pred CCcchhhhhcCCCCChhhcCCCCccccCHHHHHHHHHHHHHHHh-hhhh-hhhhhhhcCCCH--HHHHHHHHCCCCcCCC
Confidence 466778888865454444444443 3677777555557888853 2222 233355678999 9999999999999999
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHH-HHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC
Q 014993 85 PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLC-INQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 163 (415)
Q Consensus 85 P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~-~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~ 163 (415)
|++|||.|++..+.+.++|++++.+.+++..+..|++++ ..+|..+|+++||++|||++++|+.++|+++|||++|||.
T Consensus 128 PeeyGGlG~s~~~~a~V~eela~~~~s~a~~~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDa 207 (774)
T PRK13026 128 PKEYGGKGFSAYANSTIVSKIATRSVSAAVTVMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDA 207 (774)
T ss_pred ChhhCCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCch
Confidence 999999999999999999999999988776666665444 4578899999999999999999999999999999999999
Q ss_pred CCceeEEE-----EeCC---EEEEEeEeecccCCCCCCEEEEEEEe-CCC-----CCCCCeEEEEEecCCCCeeeccccc
Q 014993 164 VGMKCKAD-----RVDG---GYIINGNKMWCTNGPVAQTLVVYAKT-DIK-----AGSKGITAFIIEKGMPGFSTAQKLD 229 (415)
Q Consensus 164 ~~~~t~a~-----~~~~---g~~LnG~k~~vs~~~~ad~~~v~a~~-~~~-----~~~~~~~~~lV~~~~~Gv~v~~~~~ 229 (415)
..+.|+++ ++|| ||+|||+|.|||+++.||+++|.+++ +++ +++.++++|+||++.|||++.+.++
T Consensus 208 asi~Ttav~t~a~~dGd~~~gwvLNG~K~~IT~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~ 287 (774)
T PRK13026 208 GAIPDTGIVCRGEFEGEEVLGLRLTWDKRYITLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHN 287 (774)
T ss_pred hcccceeeeeeeeecCCccccEEEEEEEEeecCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeecccc
Confidence 98886554 5677 69999999999999999999888764 332 2356899999999999999998899
Q ss_pred cccCCCCCceeEEEeeeeeCCCCcccCC---CCCCCcchHHHHHhhchHHH-HHHhHHHHHHHHHHHHHHHHHHHhhccc
Q 014993 230 KLGMRGSDTCELVFENCFVPNENVLGQE---GKGCNSFGVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYVRQREQF 305 (415)
Q Consensus 230 ~~Gl~~~~~~~v~f~~v~Vp~~~llg~~---~~~~~~~g~~~~~~~~~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~ 305 (415)
++|++.. +++++||||+||.+++||.+ +. ||..++..++.+| +.+++.++|+++.+++.+++|+++|+||
T Consensus 288 ~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~G~-----G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QF 361 (774)
T PRK13026 288 PLGMAFM-NGTTRGKDVFIPLDWIIGGPDYAGR-----GWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQF 361 (774)
T ss_pred ccccCcc-cceEEEeeeEccHHHhcCCcccCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999864 58999999999999999975 66 9999999999999 8999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCc--
Q 014993 306 GRPLGEFQFIQGKTADMYT---ALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE-- 380 (415)
Q Consensus 306 g~pi~~~q~vq~~la~~~~---~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~-- 380 (415)
|+||++||.||++||+|.+ .++++|.+++.++ |.+.+....++++|+++++.+.+++++|+|+|||.||+++
T Consensus 362 G~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~---D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~~e~~ 438 (774)
T PRK13026 362 GMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL---DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQLGPK 438 (774)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheeeCCCC
Confidence 9999999999999999999 7899999998764 5565556788999999999999999999999999999998
Q ss_pred chHHHHHHhhccCcccCChHHHHHHH
Q 014993 381 YATGRLLRDAKLYEIGAGTSEIRRMI 406 (415)
Q Consensus 381 ~~~~r~~Rda~~~~~~~G~~~~~~~~ 406 (415)
++++|+|||++...+.+|+++++++.
T Consensus 439 ~~ler~yRdari~~i~eGtnei~R~l 464 (774)
T PRK13026 439 NYLGHAYMAVPIAITVEGANILTRNL 464 (774)
T ss_pred ChHHHHHHHhhhhheeCcHHHHHHHH
Confidence 89999999999999999999999984
No 21
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=1.1e-63 Score=492.30 Aligned_cols=371 Identities=24% Similarity=0.354 Sum_probs=323.9
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhh-hccCCCCC--cHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANI-DQSNSFPQ--DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~p~--~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
+++++.+|++.+++|+++++.|...+. .+...+|. ..++|++|.++||+++.+|++|||.|+++.+++.++|+++++
T Consensus 4 lteeq~~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~ 83 (395)
T TIGR03204 4 FSKEEQAFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSA 83 (395)
T ss_pred CCHHHHHHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhc
Confidence 356666999999999999998865442 23334552 127999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccC
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~ 188 (415)
+.+.++...++ ++...+..+|+++||++|||++++|+.++++++|||++|||...+.|++++++|+|+|||+|.|||+
T Consensus 84 ~~~~~~~~~~~--~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~ 161 (395)
T TIGR03204 84 PAPQPLAFGVS--MVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTL 161 (395)
T ss_pred CCCccchhHhH--hhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecC
Confidence 98877644332 3344677889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCC-CCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHH
Q 014993 189 GPVAQTLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267 (415)
Q Consensus 189 ~~~ad~~~v~a~~~~~~-~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~ 267 (415)
+..||+++|.+++++++ +..++++|+||.+.|||++.+.....| ++++++|+|+||+||+++++|..+. |+.
T Consensus 162 a~~Ad~~lv~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~-----g~~ 234 (395)
T TIGR03204 162 AQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENK-----GWD 234 (395)
T ss_pred CccCCeEEEEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCc-----hHH
Confidence 99999999999976432 345789999999999999965444443 6789999999999999999998777 899
Q ss_pred HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCC-C
Q 014993 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD-NGK-V 345 (415)
Q Consensus 268 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d-~~~-~ 345 (415)
.....++..|+.+++ +|+++++++.+++|+++|++||+||++||.+|++|++|.++++++|+++|+++.... .+. .
T Consensus 235 ~~~~~l~~~r~g~aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~ 312 (395)
T TIGR03204 235 YAKFLLGNERTGIAR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGK 312 (395)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 888999999998876 899999999999999999999999999999999999999999999999999986442 222 2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHh----------hccccccCc----chHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 014993 346 DPKDCAGVILCAAERATQVTLQAIQC----------LGGNGYVNE----YATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 346 ~~~~~~~ak~~~~~~a~~~~~~a~~~----------~Gg~g~~~~----~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l 411 (415)
....++++|+++++.+.++++.|+|+ |||.||+++ ++++++|||++.+.+++|+++++++.|++.+
T Consensus 313 ~~~~aa~aK~~~~~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~~~~~~~~~~~~~~r~~~~~~i~~Gt~ei~~~~ia~~~ 392 (395)
T TIGR03204 313 PNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGSNEAMDWTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAV 392 (395)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhhhHHHHHHHhccccceeccHHHHHHHHHHHHH
Confidence 34579999999999999999999985 889999965 4799999999999999999999999999988
Q ss_pred Hh
Q 014993 412 LK 413 (415)
Q Consensus 412 ~~ 413 (415)
++
T Consensus 393 l~ 394 (395)
T TIGR03204 393 LG 394 (395)
T ss_pred cC
Confidence 64
No 22
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.4e-62 Score=485.81 Aligned_cols=374 Identities=43% Similarity=0.704 Sum_probs=342.7
Q ss_pred HHHHHHHHHHHHHHhhccCcchhhhhc---cCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 34 DTQLQFKESVGQFARENIAPRAANIDQ---SNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
+++..+++.+++|+.+.+.+...+.++ ...+|. ++++++.+.|++++.+|++|||.|.+..+...++|++++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~ 84 (393)
T COG1960 7 EEQEALRAEVREFAEEELAPEAAEIDRRIEDERFPR--ELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADA 84 (393)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhhhhcccccCHH--HHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCc
Confidence 555599999999999999887766665 678887 999999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhH---HHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCce-eEEEEeCCEEEEEeEeecc
Q 014993 111 SVGLSYGAHSNL---CINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMK-CKADRVDGGYIINGNKMWC 186 (415)
Q Consensus 111 ~~~~~~~~~~~~---~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~-t~a~~~~~g~~LnG~k~~v 186 (415)
+.++.+..+... ....+..+|+++|+++|+|++.+|+.++|+++|||.+|||...+. |++++++|+|+|||+|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~i 164 (393)
T COG1960 85 GGALALGLTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWI 164 (393)
T ss_pred chhhhHHHhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEE
Confidence 887766655322 223566799999999999999999999999999999999999987 7777767779999999999
Q ss_pred cCCCCCCEEEEEEEeCCC-CCCCCeEEEEEecC-CCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcc
Q 014993 187 TNGPVAQTLVVYAKTDIK-AGSKGITAFIIEKG-MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (415)
Q Consensus 187 s~~~~ad~~~v~a~~~~~-~~~~~~~~~lV~~~-~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~ 264 (415)
||++.||+++|+++++++ ++++++++|+||++ .|||++.+.|++.|++++++++|.|+||+||.+++||.++.
T Consensus 165 s~~~~ad~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~----- 239 (393)
T COG1960 165 SNAPVADWLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGD----- 239 (393)
T ss_pred cCCCCCCEEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCc-----
Confidence 999999999999999765 46679999999999 59999987765449999999999999999999999998888
Q ss_pred hHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 014993 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 344 (415)
Q Consensus 265 g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~ 344 (415)
|+..+...++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++..+.+.
T Consensus 240 g~~~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~ 319 (393)
T COG1960 240 GFKIAMETLNVERLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGD 319 (393)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 345 ~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
+....++++|+++++.+.++++.++|+|||.||+.+++++|+|||++...+++|++++++..+++.+++.
T Consensus 320 ~~~~~~~~aK~~a~~~~~~~~~~a~q~~Gg~g~~~e~~i~r~~rda~~~~i~~Gt~~i~~~~i~~~~~~~ 389 (393)
T COG1960 320 DAGAEAAMAKLFATEAALEVADEAVQVHGGYGYTEEYPVERYYRDARILRIYEGTSEIQRLIIARRLLGL 389 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCchHHHHHHHhHhheeccCHHHHHHHHHHHHHhhh
Confidence 4447899999999999999999999999999999999999999999999999999999999999999863
No 23
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.2e-61 Score=480.22 Aligned_cols=361 Identities=29% Similarity=0.440 Sum_probs=324.9
Q ss_pred HHHHHHHHhhccCcchhhhhccCC--------CCCc-HHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 40 KESVGQFARENIAPRAANIDQSNS--------FPQD-VNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~d~~~~--------~p~~-~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
++++++|+.+.+.|.+.++|++.. ||+. .++|++|.++||+++.+|++|||.|.++.++..+.|+++++|+
T Consensus 2 ~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~~ 81 (407)
T cd01153 2 LEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGDA 81 (407)
T ss_pred hHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhhH
Confidence 688999999999998888887654 8842 2789999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe-CCEEEEEeEeecccCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~-~~g~~LnG~k~~vs~~ 189 (415)
++++.+..| .+...+..+|+++|+++|++++.+|+.++++++|||++|||...+.|+++++ +|||+|||+|.|+||+
T Consensus 82 s~~~~~~~~--~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~ 159 (407)
T cd01153 82 PLMYASGTQ--GAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAG 159 (407)
T ss_pred HHHHHHHHh--HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCC
Confidence 998876655 3345677789999999999999999999999999999999999999999998 5689999999999999
Q ss_pred CCC----CEEEEEEEeCCC-CCCCCeEEEEEecCC-----CCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCC
Q 014993 190 PVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM-----PGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK 259 (415)
Q Consensus 190 ~~a----d~~~v~a~~~~~-~~~~~~~~~lV~~~~-----~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~ 259 (415)
.+| ++++|+++++++ ++..++++|+||++. |||++.+.|+++|++++++++|+|+||+|| +||.++.
T Consensus 160 ~~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~ 236 (407)
T cd01153 160 EHDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGM 236 (407)
T ss_pred CcccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCc
Confidence 886 588899987542 234578999999987 899999999999999999999999999999 7888877
Q ss_pred CCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC--------CCcchHHHHHHHHHHHHHHHHHH
Q 014993 260 GCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP--------LGEFQFIQGKTADMYTALQSSRS 331 (415)
Q Consensus 260 ~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~p--------i~~~q~vq~~la~~~~~l~aar~ 331 (415)
|+......+..+|+.++++++|+++++++.+++|+++|.+||+| +.++|.+|++|++|.++++++|+
T Consensus 237 -----g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~ 311 (407)
T cd01153 237 -----GLAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRA 311 (407)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999 78899999999999999999999
Q ss_pred HHHHHHHHhhCCCCC--------------chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccC
Q 014993 332 YVYSVARDCDNGKVD--------------PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGA 397 (415)
Q Consensus 332 ~~~~aa~~~d~~~~~--------------~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~ 397 (415)
+++++++.+|..... ...++++|+++++.+.++++.++++|||.||.++++++|+|||++++.+++
T Consensus 312 ~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~ 391 (407)
T cd01153 312 LDLYTATVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYTREYPIEQYYRDARITTIYE 391 (407)
T ss_pred HHHHHHHhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceecCCCcHHHHHHhhhhheeec
Confidence 999999998875311 233568999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHH-HHHHH
Q 014993 398 GTSEIRRM-IIGRA 410 (415)
Q Consensus 398 G~~~~~~~-~i~~~ 410 (415)
|++++++. .+++.
T Consensus 392 Gt~~~~~~~~~~~~ 405 (407)
T cd01153 392 GTTGIQALDLIGRK 405 (407)
T ss_pred ChHHHHHHHHhhcc
Confidence 99999987 66554
No 24
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.3e-61 Score=493.74 Aligned_cols=374 Identities=24% Similarity=0.369 Sum_probs=330.3
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCC---------CC-cHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHH
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSF---------PQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHC 99 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------p~-~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~ 99 (415)
.++.+....+++.+++|+++++.|...+.|+++.+ |+ ..+.|+++.+.||+++.+|++|||.|++.....
T Consensus 54 ~~~~~~~~~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~ 133 (622)
T PTZ00456 54 DVTKELMDSLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGF 133 (622)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHH
Confidence 67789999999999999999999988777876543 42 237899999999999999999999999987555
Q ss_pred HHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCE-EE
Q 014993 100 IAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG-YI 178 (415)
Q Consensus 100 ~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g-~~ 178 (415)
.+.|.+++.+++++.....+. .+...|..+|+++||++|||++++|++++++++|||++|||+..++|+|++++|| |+
T Consensus 134 ~~~E~~~~a~~~~~~~~~l~~-ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~ 212 (622)
T PTZ00456 134 ITRELMATANWGFSMYPGLSI-GAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYK 212 (622)
T ss_pred HHHHHHHHhchHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEE
Confidence 555556777777654333332 4456788999999999999999999999999999999999999999999999885 99
Q ss_pred EEeEeecccCCCCC----CEEEEEEEeCCC-CCCCCeEEEEEecCC----------CCeeeccccccccCCCCCceeEEE
Q 014993 179 INGNKMWCTNGPVA----QTLVVYAKTDIK-AGSKGITAFIIEKGM----------PGFSTAQKLDKLGMRGSDTCELVF 243 (415)
Q Consensus 179 LnG~k~~vs~~~~a----d~~~v~a~~~~~-~~~~~~~~~lV~~~~----------~Gv~v~~~~~~~Gl~~~~~~~v~f 243 (415)
|||+|.|||++.++ ++++|+||+++. ++.+++++|+||++. +||++...++++|++++++++|.|
T Consensus 213 L~G~K~fIt~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~f 292 (622)
T PTZ00456 213 ITGTKIFISAGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSF 292 (622)
T ss_pred EeeEEEEecCCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEe
Confidence 99999999999863 688999998753 456789999999865 478887888999999999999999
Q ss_pred eeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhccc------------CCCCCc
Q 014993 244 ENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF------------GRPLGE 311 (415)
Q Consensus 244 ~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~------------g~pi~~ 311 (415)
+|+ .+++||.++. |+..+...++..|+.+++.++|+++++++.+++|+++|+|| ++||++
T Consensus 293 d~~---~~~llG~~~~-----Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~ 364 (622)
T PTZ00456 293 ENS---VGYLIGEPNA-----GMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIIC 364 (622)
T ss_pred eCh---hHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCcccc
Confidence 994 5889999888 99999999999999999999999999999999999999984 788999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---C----------CchhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014993 312 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGK---V----------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 378 (415)
Q Consensus 312 ~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~---~----------~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~ 378 (415)
+|.||++|++|.+.++++|++++++++.+|.+. + .....+++|+++++.+.++++.++|+|||+||+
T Consensus 365 ~~~Vr~~L~~~~a~~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~ 444 (622)
T PTZ00456 365 HANVRQNILFAKAVAEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYI 444 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 999999999999999999999999999998652 1 123467999999999999999999999999999
Q ss_pred CcchHHHHHHhhccCcccCChHHHHH-HHHHHHHH
Q 014993 379 NEYATGRLLRDAKLYEIGAGTSEIRR-MIIGRALL 412 (415)
Q Consensus 379 ~~~~~~r~~Rda~~~~~~~G~~~~~~-~~i~~~l~ 412 (415)
++++++++|||++...|++|+++|++ ..|+|.++
T Consensus 445 ~e~~ler~~RDari~~i~eGt~~iq~~dli~rkll 479 (622)
T PTZ00456 445 KGNGMEQILRDARIGTLYEGTTGIQALDFIGRKVL 479 (622)
T ss_pred CCchHHHHHHHhhcccccCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999997 59999887
No 25
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=3.7e-61 Score=512.68 Aligned_cols=376 Identities=23% Similarity=0.340 Sum_probs=333.0
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccC-------CCC-CcHHHHHHHH-hcCCCCCCCCcC---------------
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSN-------SFP-QDVNLWKLMG-NFNLHGITAPQE--------------- 87 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~p-~~~~~~~~l~-~~Gl~~l~~P~~--------------- 87 (415)
.++++.++++++++|+++++.|...++++.. .+| . +.|+++. ++||+++.+|++
T Consensus 402 ~s~~~~~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~ 479 (822)
T PLN02876 402 PSEKVLELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEE--ERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKH 479 (822)
T ss_pred CCHHHHHHHHHHHHHHHHHccCccHHHHhhcccccccccCcch--HHHHHHHHHcCcccCCCCchhhhhhhhcccccccc
Confidence 3566669999999999999888765555321 366 5 7788875 999999999995
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHhccccchhH-HhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCC
Q 014993 88 ---------YGGLGLGYLYHCIAMEEISRASGSVGLS-YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157 (415)
Q Consensus 88 ---------~GG~g~~~~~~~~v~e~la~~~~~~~~~-~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep 157 (415)
|||.|+++.+.+.++|++++++.+.... ...+...+...|..+|+++||++||+++++|+.++|+++|||
T Consensus 480 ~~~~~~~~~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp 559 (822)
T PLN02876 480 MVSGDSADQLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEP 559 (822)
T ss_pred cccccccccCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCC
Confidence 9999999999999999999986442221 122221333467889999999999999999999999999999
Q ss_pred C-CCCCCCCceeEEEEeCCEEEEEeEeecccCC--CCCCEEEEEEEeCCC-CCCCCeEEEEEecCCCCeeeccccccccC
Q 014993 158 N-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGM 233 (415)
Q Consensus 158 ~-~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~--~~ad~~~v~a~~~~~-~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl 233 (415)
+ +|||...+.|++++++|||+|||+|.|+|++ +.||+++|+++++++ +++.++++|+||.+.|||++.++|+++|+
T Consensus 560 ~~~gsd~~~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~ 639 (822)
T PLN02876 560 QVASSDATNIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGF 639 (822)
T ss_pred CccCcccccceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceecc
Confidence 7 6899999999999999999999999999999 579999999998643 23457899999999999999889999999
Q ss_pred CCC--CceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 014993 234 RGS--DTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 311 (415)
Q Consensus 234 ~~~--~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~ 311 (415)
+++ ++++|+|+||+||+++++|.++. |+..+...++.+|+..++.++|+++++++.+++|+++|+|||+||++
T Consensus 640 r~~~~~~~~v~fd~V~Vp~~~~lg~~g~-----g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~ 714 (822)
T PLN02876 640 DDAPHGHAEISFENVRVPAKNILLGEGR-----GFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQ 714 (822)
T ss_pred CCCCCCeeEEEEcceeechhheecCCCc-----hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh
Confidence 984 58899999999999999998877 88888888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHh
Q 014993 312 FQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389 (415)
Q Consensus 312 ~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~--~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rd 389 (415)
+|.+|++|++|.++++++|++++++++.+|... +....++++|+++++.+.++++.|+|+|||+||+++++++|+|||
T Consensus 715 ~q~vq~~la~~~~~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~~e~~l~r~~Rd 794 (822)
T PLN02876 715 HGSFLSDLAKCRVELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVSSDTVLAHLWAT 794 (822)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHh
Confidence 999999999999999999999999999998732 344678999999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHhc
Q 014993 390 AKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 390 a~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++..++++|++++++..|++.+++.
T Consensus 795 ar~~~i~~Gt~e~~~~~ia~~~~~~ 819 (822)
T PLN02876 795 ARTLRIADGPDEVHLGTIAKLELQR 819 (822)
T ss_pred hhhcccccChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999864
No 26
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=1.4e-61 Score=476.08 Aligned_cols=364 Identities=23% Similarity=0.366 Sum_probs=324.5
Q ss_pred HHHHHHHHHHHHhhccCcchhh-----hhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccc
Q 014993 36 QLQFKESVGQFARENIAPRAAN-----IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASG 110 (415)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~ 110 (415)
+.++++.+++|+++++.|.... +++.+.+|. ++|++|++.||+++.+|++|||.|.++.+++.++|++++.|+
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~ 80 (380)
T cd01152 3 EEAFRAEVRAWLAAHLPPELREESALGYREGREDRR--RWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80 (380)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccchHHH--HHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCC
Confidence 3499999999999999886432 244566888 899999999999999999999999999999999999999999
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~ 190 (415)
++++.+..+. .+...+..+|+++|+++|++++++|+.++++++|||..|||...+.+++++++|||+|||+|.|||+++
T Consensus 81 ~~~~~~~~~~-~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~ 159 (380)
T cd01152 81 PVPFNQIGID-LAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAH 159 (380)
T ss_pred CcccchhhHH-HHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCcc
Confidence 9887622332 445678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC-CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 191 VAQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 191 ~ad~~~v~a~~~~~-~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
.+|+++|+++++++ ++..++++|+||++.|||++.+.|+++| +++++++.|+||+||.++++|.++. |+...
T Consensus 160 ~ad~~lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~-----g~~~~ 232 (380)
T cd01152 160 YADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVND-----GWKVA 232 (380)
T ss_pred ccCEEEEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCc-----hHHHH
Confidence 99999999997643 2245789999999999999998888887 5788999999999999999998888 88887
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++..|+..++. +..+++.+++|+++|.+||+||+++|.+|++|++|.++++++|++++.+++.++++.+....
T Consensus 233 ~~~l~~~r~~~~~~----~~~~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~ 308 (380)
T cd01152 233 MTTLNFERVSIGGS----AATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAE 308 (380)
T ss_pred HHHHHhcccccchh----hhHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 77777777776654 45555667788888999999999999999999999999999999999999999887655567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCc--------chHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNE--------YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~--------~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++++|+++++.+.++++.++|++||.||+++ ++++|+|||++.+.+++|++++++..|++.+++
T Consensus 309 ~a~aK~~~~~~a~~v~~~a~~i~Gg~g~~~~~~~~~~~~~~~~r~~rd~~~~~~~~g~~~~~~~~i~~~~~~ 380 (380)
T cd01152 309 ASIAKLFGSELAQELAELALELLGTAALLRDPAPGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccccccccccHHHHHHHhCccceeeccHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999999988 799999999999999999999999999998874
No 27
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=100.00 E-value=4.6e-61 Score=460.75 Aligned_cols=400 Identities=31% Similarity=0.503 Sum_probs=357.3
Q ss_pred cccccchhhhhhhccccccCCCCCCCCCCCChHHHHHHHH----HHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhc
Q 014993 2 QRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKE----SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNF 77 (415)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~ 77 (415)
+++.-.|+|.+..|.- +...+.+.|.|..+++|+.++.+ ..++|+.+.. .....|+.+..+. +.++.|+++
T Consensus 47 ~~~i~~rs~~~~lF~~-~~v~k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e~~--d~~k~d~~~~~~~--~t~e~l~el 121 (634)
T KOG0137|consen 47 DASIESRSFARGLFRG-KLVTKDVFPYPEVITSEQKELLEQFVLPLERFFEEVN--DSKKNDKLGKIEE--TTLEALREL 121 (634)
T ss_pred cCCccchhHHHHhhhh-hhhhhhhcCCcccCcHHHHHHHHhhhhhHHHhhhccc--hhhhhhhhcccch--hHHHHHHHh
Confidence 3566789999994443 34445555555555555545543 3444433222 2455678888888 999999999
Q ss_pred CCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCC
Q 014993 78 NLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEP 157 (415)
Q Consensus 78 Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep 157 (415)
|++++.+|.+|+|.|+...+++.+.|.++-+|.++++.+..|...+...|..+|+++||++|||++++|+.++++++|||
T Consensus 122 G~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~ 201 (634)
T KOG0137|consen 122 GLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEP 201 (634)
T ss_pred CceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCHHHHHHHHHhhhcCCccceEEEecC
Confidence 99999999999999999999999999999999999998888887888889999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEeC--CEEEEEeEeecccCCCCCCEEEEEEEeCCC----CCCCCeEEEEEecCCCCeeeccccccc
Q 014993 158 NAGSDVVGMKCKADRVD--GGYIINGNKMWCTNGPVAQTLVVYAKTDIK----AGSKGITAFIIEKGMPGFSTAQKLDKL 231 (415)
Q Consensus 158 ~~gsd~~~~~t~a~~~~--~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~----~~~~~~~~~lV~~~~~Gv~v~~~~~~~ 231 (415)
..|||.....++++... +.|+|||.|.|+||+..||+++|+|++..+ ...+++++|||+++.-||+-.++..+|
T Consensus 202 s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~ 281 (634)
T KOG0137|consen 202 SSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKM 281 (634)
T ss_pred CCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccccCCCCccccCceEEEEEeccccCccCCCchhhh
Confidence 99999999999987765 459999999999999999999999998622 235689999999999999999999999
Q ss_pred cCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCc
Q 014993 232 GMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGE 311 (415)
Q Consensus 232 Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~ 311 (415)
|.+++.+.+|.|++|.||.+++||.++. |+++.+..++.+|+..++..+|.++++++++.+|+..|.|||+++.+
T Consensus 282 GiKgsnt~~v~f~~~ki~~envlG~~G~-----G~kva~nilnsgR~~~aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~ 356 (634)
T KOG0137|consen 282 GIKGSNTAEVHFEGVKIPIENVLGKPGD-----GFKVAMNILNSGRFGMAAALLGLMKRIIEEAADYATNRTQFGKKLHD 356 (634)
T ss_pred cccccceeeeeeccccccHHHhcCCCCc-----chHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHhhcceecCcchhh
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHh
Q 014993 312 FQFIQGKTADMYTALQSSRSYVYSVARDCDNG--KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389 (415)
Q Consensus 312 ~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~--~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rd 389 (415)
+..+|.++++|...+.+.++++|..+..+|+. .+...++++.|+|+.+.++.++++++|++||+||+.+.+++|.+||
T Consensus 357 ~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~iqi~Gg~g~m~d~g~Er~LRD 436 (634)
T KOG0137|consen 357 FGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAIQIVGGMGYMRDTGLERLLRD 436 (634)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhhheeccccccccCchHHHhhh
Confidence 99999999999999999999999999999984 3567889999999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHH
Q 014993 390 AKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 390 a~~~~~~~G~~~~~~~~i~~~l 411 (415)
++.+.|++|++++++..|+..-
T Consensus 437 ~ri~~I~egtndvLrlfiAltg 458 (634)
T KOG0137|consen 437 ARILRIFEGTNDVLRLFIALTG 458 (634)
T ss_pred hheeeeecCchhHHHHHHHHHH
Confidence 9999999999999999887643
No 28
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.5e-59 Score=484.63 Aligned_cols=374 Identities=21% Similarity=0.316 Sum_probs=332.5
Q ss_pred ChHHHHHHHHHHHHHHhhc--c-CcchhhhhccCCCC-CcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 014993 32 FDDTQLQFKESVGQFAREN--I-APRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~--~-~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~ 107 (415)
.++++..+++++++|+++. + .|....+++.+.++ . ++++.+.+.|++++.+|++ ++.++..++|++++
T Consensus 61 l~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~--~l~~~~~~~g~~~~~~~~~------~~~~~~~~~e~l~~ 132 (686)
T PLN02636 61 MRGKHRDIQEKIYEFFNSRPDLQTPVEISKDEHRELCMR--QLTGLVREAGIRPMKYLVE------DPAKYFAITEAVGS 132 (686)
T ss_pred cCCcHHHHHHHHHHHHHhCccccCCchhhHHHhhhhHHH--HHHHHHHhcCccccccccC------CHHHHHHHHHHHHh
Confidence 3344558999999998876 3 55556667667777 6 8889999999999999976 88899999999999
Q ss_pred ccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----
Q 014993 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN----- 180 (415)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln----- 180 (415)
.|++++..+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+||
T Consensus 133 ~d~s~~~~~~vh~~l~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~ 212 (686)
T PLN02636 133 VDMSLGIKLGVQYSLWGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDG 212 (686)
T ss_pred hchhhHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCC
Confidence 999888777788778888899999999999999999999999999999999999999999999999 7899999
Q ss_pred eEeecccCCCC-CCEEEEEEEeCCC------CCCCCeEEEEEecC-------CCCeeeccccccccCCCCCceeEEEeee
Q 014993 181 GNKMWCTNGPV-AQTLVVYAKTDIK------AGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENC 246 (415)
Q Consensus 181 G~k~~vs~~~~-ad~~~v~a~~~~~------~~~~~~~~~lV~~~-------~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v 246 (415)
|+|.|++|++. ||+++|+|++... ++..|+++||||.+ .|||++.+..+++|+++.+++.|.||||
T Consensus 213 g~K~wI~na~~~ad~~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnV 292 (686)
T PLN02636 213 AIKWWIGNAAVHGKFATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSV 292 (686)
T ss_pred eEEEeecCCcccCCEEEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeE
Confidence 99999999976 9999999998621 12568999999987 5999999999999999999999999999
Q ss_pred eeCCCCcccCCCC-----------CCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCC------C
Q 014993 247 FVPNENVLGQEGK-----------GCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRP------L 309 (415)
Q Consensus 247 ~Vp~~~llg~~~~-----------~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~p------i 309 (415)
+||.+++||..+. +...+|+......+..+|+.+++.++|++++|++.+++|+++|+|||+| |
T Consensus 293 rVP~~nlLg~~g~v~~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I 372 (686)
T PLN02636 293 RIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISI 372 (686)
T ss_pred EECHHHhccccccccCCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcc
Confidence 9999999964332 1224488889999999999999999999999999999999999999999 9
Q ss_pred CcchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhCCC-----CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCc
Q 014993 310 GEFQFIQGKTADMYTALQSS----RSYVYSVARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE 380 (415)
Q Consensus 310 ~~~q~vq~~la~~~~~l~aa----r~~~~~aa~~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~ 380 (415)
++||.+|++|++|.+.++++ +.+++.+++..+.++ +....++++|+++++.+.+++++|+|+|||+||+.+
T Consensus 373 ~d~q~vQ~~La~~la~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~~~ 452 (686)
T PLN02636 373 LDYQSQQHKLMPMLASTYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYAAV 452 (686)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCc
Confidence 99999999999999999995 577777777665543 244568899999999999999999999999999999
Q ss_pred chHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 381 YATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 381 ~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++++++|||++...+++|+++|++.++++.|++
T Consensus 453 ~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 485 (686)
T PLN02636 453 NRFGSLRNDHDIFQTFEGDNTVLLQQVAADLLK 485 (686)
T ss_pred CcHHHHHHHhhhheeecChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
No 29
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.6e-59 Score=461.35 Aligned_cols=355 Identities=22% Similarity=0.281 Sum_probs=312.5
Q ss_pred HHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhh
Q 014993 42 SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN 121 (415)
Q Consensus 42 ~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~ 121 (415)
++++++ +.+.+++.++|+++.+|. +.|+.|++.||+++.+|++|||.|+++.+++.++|++++.|+++++++.+|.
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~- 77 (377)
T cd01163 2 RARPLA-ARIAEGAAERDRQRGLPY--EEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHF- 77 (377)
T ss_pred hHHHHH-HHHhhhhhhhhhcCCCCH--HHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH-
Confidence 466775 568888889999999999 9999999999999999999999999999999999999999999999887776
Q ss_pred HHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEe
Q 014993 122 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 201 (415)
Q Consensus 122 ~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~ 201 (415)
.+...+..+|+++|+++|++++++|+.+ +.+++||+.|+ .....+++++++|||+|||+|.|||++..||+++|.+++
T Consensus 78 ~~~~~l~~~g~~~~~~~~l~~~~~g~~~-~~a~tE~~~~~-~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~ 155 (377)
T cd01163 78 GFVEALLLAGPEQFRKRWFGRVLNGWIF-GNAVSERGSVR-PGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALD 155 (377)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCCeE-EEeecCCCCCC-CCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEc
Confidence 4456788899999999999999999965 56999998775 666777888889999999999999999999999999996
Q ss_pred CCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHh
Q 014993 202 DIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLA 281 (415)
Q Consensus 202 ~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~a 281 (415)
++ .+..+|+||++.|||++.+.|+++|++++++++|+|+||+||+++++|.++. ++. ....+..+++.++
T Consensus 156 ~~----~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~-----g~~-~~~~~~~~~l~~a 225 (377)
T cd01163 156 EE----GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNA-----PDR-GTLLTAIYQLVLA 225 (377)
T ss_pred CC----CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCcc-----ccc-cccccHHHHHHHH
Confidence 53 3578899999999999998999999999999999999999999999998776 543 2233456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc-ccCC----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC------------
Q 014993 282 AGPLGIMQACLDVVLPYVRQRE-QFGR----PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK------------ 344 (415)
Q Consensus 282 a~~~G~a~~al~~a~~~~~~R~-~~g~----pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~------------ 344 (415)
+.++|+++++++.+++|+++|+ +||+ ++.++|.+|++|++|.++++++|++++++++.+|++.
T Consensus 226 a~~lG~a~~al~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~ 305 (377)
T cd01163 226 AVLAGIARAALDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARG 305 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHH
Confidence 9999999999999999999995 7776 4789999999999999999999999999999988641
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 345 ~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+....++++|+++++.+.++++.++|+|||+||+++++++|+|||++...+|...+ .....++..++.
T Consensus 306 ~~~~~~~~aK~~~~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~h~~~~-~~~~~~~~~~~~ 373 (377)
T cd01163 306 EAALAVAAAKVVVTRLALDATSRLFEVGGASATAREHNLDRHWRNARTHTLHNPVI-YKERAVGDYALN 373 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhccccCCcchhhhhhhhhccCHHH-HHHHHhchhhcC
Confidence 11345779999999999999999999999999999999999999999999988885 444556655554
No 30
>KOG0138 consensus Glutaryl-CoA dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-58 Score=409.19 Aligned_cols=378 Identities=30% Similarity=0.493 Sum_probs=353.0
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHH
Q 014993 23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102 (415)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ 102 (415)
+.+..-+.+++||+ .+++.+|+++++++.|...+..+...||+ ++..+|.++|++|.++ +-||-.|.+...+..+.
T Consensus 47 D~~~l~dqLT~dE~-air~~~Reycq~~l~Prvtea~r~e~F~~--~i~pemGsmGvlG~ti-kGYGCaG~S~vaygl~~ 122 (432)
T KOG0138|consen 47 DPLVLEDQLTEDEI-AIRDTFREYCQERLMPRVTEANRNEVFDR--EIIPEMGSMGVLGPTI-KGYGCAGVSSVAYGLLA 122 (432)
T ss_pred chhhhhhhcCHHHH-HHHHHHHHHHHHHhhhHHHHHhhhccCCh--hhhhhhhccccccCcc-cCcCCCchHHHHHHHHH
Confidence 34444467777777 99999999999999999999999999999 9999999999999988 67999999999999999
Q ss_pred HHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCE--EEEE
Q 014993 103 EEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGG--YIIN 180 (415)
Q Consensus 103 e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g--~~Ln 180 (415)
.|+.|.|.+....+.+|.+++...|..+|+++||++|+|.+++|+.++||++|||.+|||..++.|+|+.+..+ |.||
T Consensus 123 rEveRVDs~yrs~~sVqsSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklN 202 (432)
T KOG0138|consen 123 REVERVDSGYRSAMSVQSSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLN 202 (432)
T ss_pred HHHHHhhhhchhhhhhhhhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEEC
Confidence 99999999988888889889999999999999999999999999999999999999999999999999999998 9999
Q ss_pred eEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCC
Q 014993 181 GNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKG 260 (415)
Q Consensus 181 G~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~ 260 (415)
|+|.|++|++.||+++|+||...+ ..+.-|+|+++.+|++..+...++++|.+.++.|-+|||+||++++|....
T Consensus 203 GsKtWI~nsp~aDl~vvwAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-- 277 (432)
T KOG0138|consen 203 GSKTWITNSPMADLFVVWARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-- 277 (432)
T ss_pred CeeeeecCCcccceEEEEEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc--
Confidence 999999999999999999998643 467889999999999988888999999999999999999999999996443
Q ss_pred CCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014993 261 CNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 340 (415)
Q Consensus 261 ~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~ 340 (415)
++.--...++..|+.+|-..+|+++.+++.+.+|+.+|+|||+|++.+|.+|.+|++|..++...-.++++..+..
T Consensus 278 ----s~qgpf~cLnnaR~giAWg~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLk 353 (432)
T KOG0138|consen 278 ----SLQGPFGCLNNARYGIAWGALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLK 353 (432)
T ss_pred ----ccCCchhhhhhhhhheeehhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2333456678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 341 DNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 341 d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
|++......+++.|.+.+--+.++++.+.+++||.|..+++-+-|++-|......++|+-||+...++|.+.+
T Consensus 354 d~g~~tp~qiSl~Krn~~gKaleiAr~~RdmLGgNGI~deyhv~rh~~nLE~vnTYEGThDihaLilGRaiTG 426 (432)
T KOG0138|consen 354 DQGKATPEQISLLKRNNCGKALEIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITG 426 (432)
T ss_pred hcccCChhhhHHHhhccchhHHHHHHHHHHHhcCCcchhHHHHHHHHcCccceecccccchHHHHhhhhhhhh
Confidence 9999889999999999999999999999999999999999999999999999999999999999999998865
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=4.2e-57 Score=448.31 Aligned_cols=356 Identities=28% Similarity=0.433 Sum_probs=313.4
Q ss_pred HHHHHHhhccCcchhhhhccCC------CCC-cHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchh
Q 014993 42 SVGQFARENIAPRAANIDQSNS------FPQ-DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (415)
Q Consensus 42 ~~~~~~~~~~~~~~~~~d~~~~------~p~-~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 114 (415)
...++++.+ .|...++|+.+. +|+ ..++++++.+.||+++ +|+++||.| ......+.+.++..+...+.
T Consensus 36 ~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 111 (418)
T cd01154 36 ELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGR--RHVHFAAGYLLSDAAAGLLC 111 (418)
T ss_pred HHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCc--HHHHHHHHHHHHhcchhccC
Confidence 334554555 777788888777 673 2378899999999999 788887655 34445567778887776666
Q ss_pred HHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCC----ceeEEEecCCCCCCCCCCceeEEEEe-CCEEEEEeEeecccCC
Q 014993 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE----HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNG 189 (415)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~----~~~~~a~tep~~gsd~~~~~t~a~~~-~~g~~LnG~k~~vs~~ 189 (415)
.+.+|. .+...|..+|+++|+ +|+|++++|+ .++|+++|||++|||+..++|+|+++ +|+|+|||+|.|+|++
T Consensus 112 p~~~~~-~~~~~l~~~g~~~~~-~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a 189 (418)
T cd01154 112 PLTMTD-AAVYALRKYGPEELK-QYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP 189 (418)
T ss_pred cHHHHH-HHHHHHHHhCcHHHH-HHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc
Confidence 655665 677888999988864 6999999997 89999999999999999999999999 8999999999999999
Q ss_pred CCCCEEEEEEEeCCC-CCCCCeEEEEEecCCC-----CeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCc
Q 014993 190 PVAQTLVVYAKTDIK-AGSKGITAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNS 263 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~-~~~~~~~~~lV~~~~~-----Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~ 263 (415)
.||+++|+|+++++ +++.++++|+||++.| ||++.+.|+++|++++++++|.|+||+ +++||.++.
T Consensus 190 -~Ad~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv~---~~~lG~~g~---- 261 (418)
T cd01154 190 -LADAALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDAE---AYLIGDEGK---- 261 (418)
T ss_pred -ccCEEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCcC---ccccCCCCc----
Confidence 99999999998754 3457899999999875 999999999999999999999999984 789999888
Q ss_pred chHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 014993 264 FGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 343 (415)
Q Consensus 264 ~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~ 343 (415)
|+..+...++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++..
T Consensus 262 -G~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~ 340 (418)
T cd01154 262 -GIYYILEMLNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRA 340 (418)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred CCC--------chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHH
Q 014993 344 KVD--------PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 412 (415)
Q Consensus 344 ~~~--------~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~ 412 (415)
... ...++++|+++++.+.++++.|+|+|||.||+++++++|+|||++..+|++|+++|++..+.|.|-
T Consensus 341 ~~~~~~~~~~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~~~~~l~r~~RDa~~~~i~~Gt~~i~~~~~~r~~~ 417 (418)
T cd01154 341 AADKPVEAHMARLATPVAKLIACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTPIWEGTGNIQALDVLRVLV 417 (418)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEcCCChHHHHHhcCcCcceeccHHHHHHHHHHHHhc
Confidence 211 124677999999999999999999999999999999999999999999999999999999999874
No 32
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=1.9e-56 Score=460.53 Aligned_cols=351 Identities=19% Similarity=0.242 Sum_probs=311.9
Q ss_pred hhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHH
Q 014993 58 IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKD 137 (415)
Q Consensus 58 ~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~ 137 (415)
.++...++. +.++++.+.|+.++.+|++ |.+ ++...+.++|++++.|++++..+..|..++...|..+|+++|++
T Consensus 100 ~~~~~~~~~--~~~~~l~~~g~~~~~~pe~--g~~-~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~ 174 (680)
T PLN02312 100 MEQQREITM--KRILYLLERGVFRGWLTET--GPE-AELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHD 174 (680)
T ss_pred HHHHHHhHH--HHHHHHHHhhhcCCCCCCC--CCc-cHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHH
Confidence 344556666 8899999999999999995 333 68888999999999999887777788767888899999999999
Q ss_pred HHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----eEeecccCC-CCCCEEEEEEEeCCCCCCCC
Q 014993 138 KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKG 209 (415)
Q Consensus 138 ~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln-----G~k~~vs~~-~~ad~~~v~a~~~~~~~~~~ 209 (415)
+|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|.|++|+ ..||+++|+|++..+++..|
T Consensus 175 ~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~G 254 (680)
T PLN02312 175 KWLKDTEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEG 254 (680)
T ss_pred HHHHHHhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCC
Confidence 999999999999999999999999999999999998 5789999 799999998 79999999999976555678
Q ss_pred eEEEEEe---cC---CCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCC----C-------CCcchHHHHHhh
Q 014993 210 ITAFIIE---KG---MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGK----G-------CNSFGVYVMMSG 272 (415)
Q Consensus 210 ~~~~lV~---~~---~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~----~-------~~~~g~~~~~~~ 272 (415)
+++|+|| .+ .|||++.+..+++|+++.+++.|.||||+||.+++||..+. + ....|+..+...
T Consensus 255 v~~FlV~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~ 334 (680)
T PLN02312 255 VHAFIAQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAP 334 (680)
T ss_pred eEEEEEeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHH
Confidence 9999998 23 79999999999999999999999999999999999984200 0 012388888899
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC----C---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-
Q 014993 273 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR----P---LGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK- 344 (415)
Q Consensus 273 ~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~----p---i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~- 344 (415)
+..+|+.+++.++|++++|++.+++|+++|+|||+ | |++||.+|++|++|.+++++++.....+.+.++.+.
T Consensus 335 l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~ 414 (680)
T PLN02312 335 LTSGRVTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTP 414 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999995 4 999999999999999999998877777777665532
Q ss_pred ----CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 345 ----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 345 ----~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+....++++|+++++.+.+++++|+|+|||+||+.+++++++|||++...+++|++++++.++++.+++
T Consensus 415 ~~~~~~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~~~~~l~~l~rd~~~~~t~EG~n~Vl~~~iAr~ll~ 487 (680)
T PLN02312 415 ESNKAIHVVSSGFKAVLTWHNMRTLQECREACGGQGLKTENRVGQLKAEYDVQSTFEGDNNVLMQQVSKALLA 487 (680)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHhhhhheeecCcHHHHHHHHHHHHHH
Confidence 244578999999999999999999999999999999999999999999999999999999999998875
No 33
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=2.9e-56 Score=437.03 Aligned_cols=353 Identities=20% Similarity=0.264 Sum_probs=300.5
Q ss_pred HHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhh
Q 014993 42 SVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSN 121 (415)
Q Consensus 42 ~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~ 121 (415)
++++++ +.+++.+.++|+++.||. +.|+.|++.||+++.+|++|||.|+++.+.+.++|+|++.|+++++++..+.
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~- 77 (370)
T cd01159 2 RAEDLA-PLIRERAPEAERARRLPD--EVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVA- 77 (370)
T ss_pred hHHHHH-HHHHHhHHHHHHcCCCCH--HHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHH-
Confidence 345563 557788889999999999 9999999999999999999999999999999999999999999988765554
Q ss_pred HHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEe
Q 014993 122 LCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKT 201 (415)
Q Consensus 122 ~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~ 201 (415)
+....+..+++++|++.|++.. +...+ ....+.++|++++|||+|||+|.|||++..+|+++|.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~----------g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~ 144 (370)
T cd01159 78 THSRMLAAFPPEAQEEVWGDGP---DTLLA----------GSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIV 144 (370)
T ss_pred HHHHHHHhCCHHHHHHHhCCCC---CceEE----------eeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeEC
Confidence 5556777889999998887642 11111 1123467899999999999999999999999999999998
Q ss_pred CCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCC-CcchHH---HHHhhchHHH
Q 014993 202 DIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC-NSFGVY---VMMSGLDLER 277 (415)
Q Consensus 202 ~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~-~~~g~~---~~~~~~~~~r 277 (415)
+++.+..++++|+||++ ||++.+.|+++||+++++++|+|+||+||++++|+..+... ...+.. +.......++
T Consensus 145 ~~~~~~~~~~~~lV~~~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 222 (370)
T cd01159 145 EDDDGGPLPRAFVVPRA--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFP 222 (370)
T ss_pred CCCCCCCcceEEEEEhH--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHH
Confidence 64434567999999987 99999999999999999999999999999999997543100 000211 2233456778
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhccc---CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC--------C
Q 014993 278 LVLAAGPLGIMQACLDVVLPYVRQREQF---GRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV--------D 346 (415)
Q Consensus 278 ~~~aa~~~G~a~~al~~a~~~~~~R~~~---g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~--------~ 346 (415)
+.++++++|+++++++.+++|+++|.+| |+||+++|.+|++|++|.+.++++|++++.+++.+|++.. .
T Consensus 223 ~~~aa~~lG~a~~~l~~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~ 302 (370)
T cd01159 223 LSFAAVSLGAAEGALAEFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEE 302 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 9999999999999999999999999997 6889999999999999999999999999999999886421 1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChH-HHHHHHHHHHHHh
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLK 413 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~-~~~~~~i~~~l~~ 413 (415)
...++++|+++++.+.++++.++|++||.||.++++++|+|||++...+|+|++ +++++.|+|.+++
T Consensus 303 ~~~~~~aK~~~~e~~~~~~~~a~~~~Gg~g~~~~~~l~r~~Rd~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (370)
T cd01159 303 RARIRRDAAYAAKLSAEAVDRLFHAAGGSALYTASPLQRIWRDIHAAAQHAALNPETAAEAYGRALLG 370 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccCCcHHHHHHHHHHHhhhhccCcchHHHHHHHHhcC
Confidence 235778999999999999999999999999999999999999999999999999 9999999999875
No 34
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-53 Score=425.07 Aligned_cols=328 Identities=23% Similarity=0.355 Sum_probs=284.2
Q ss_pred cHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHH-HhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhc
Q 014993 67 DVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI-SRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLIS 145 (415)
Q Consensus 67 ~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~l-a~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~ 145 (415)
+.++++.+.+.||.++.+++++| ........+.+-| +..++...+.+.++ .+...+..+++++|+++|+|++++
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~g~~cp~~mT--~~a~~~l~~~~~e~~~~~lp~l~s 162 (538)
T PRK11561 88 WHLLMQGLCANRVHNLAWEEDAR---SGAFVARAARFMLHAQVEAGTLCPITMT--FAATPLLLQMLPAPFQDWLTPLLS 162 (538)
T ss_pred HHHHHHHHHHcCCccCCCCCccC---chHHHHHHHHHHHHhhhhHHhhchHHHH--HHHHHHHHhcCHHHHHHHHHHHhC
Confidence 45667778889999999988775 2222222233333 33334333333333 445556667889999999999999
Q ss_pred CC-------------ceeEEEecCCCCCCCCCCceeEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCeE
Q 014993 146 GE-------------HVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGIT 211 (415)
Q Consensus 146 g~-------------~~~~~a~tep~~gsd~~~~~t~a~~~-~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~ 211 (415)
|+ .++++++|||++|||+..++|+|+++ +|+|+|||+|.|+| ++.||+++|+|+++ ++++
T Consensus 163 g~~~~~~~~~~~~~~~~~~~a~TEp~~GSDv~~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls 236 (538)
T PRK11561 163 DRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLS 236 (538)
T ss_pred CCcccccccchhhhhheeEEEecCCCCCCchhhCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceE
Confidence 97 45699999999999999999999994 67899999999999 68999999999985 3799
Q ss_pred EEEEecCCC-----CeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHH
Q 014993 212 AFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLG 286 (415)
Q Consensus 212 ~~lV~~~~~-----Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G 286 (415)
+|+||++.| ||++.+.++++|++++++++|.|+||. +++||.++. |+..+...++..|+..++.++|
T Consensus 237 ~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t~ev~f~dv~---~~llG~~g~-----G~~~i~~~l~~~Rl~~a~~a~G 308 (538)
T PRK11561 237 CFFVPRFLPDGQRNAIRLERLKDKLGNRSNASSEVEFQDAI---GWLLGEEGE-----GIRLILKMGGMTRFDCALGSHG 308 (538)
T ss_pred EEEEECCCCCCCCCceEEecccccccCCCCceeEEEECCHH---HHHCCCCCc-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 799988999999999999999999993 789999998 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------chhhhHHHHHHHHH
Q 014993 287 IMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAER 360 (415)
Q Consensus 287 ~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~------~~~~~~ak~~~~~~ 360 (415)
+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+.+. .....++|+++++.
T Consensus 309 ~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~ 388 (538)
T PRK11561 309 LMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKR 388 (538)
T ss_pred HHHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986422 12345799999999
Q ss_pred HHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 361 ATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 361 a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+.+++.+|+|+|||.||+++++++|+|||++...|++|+++|++..+.|.+.+
T Consensus 389 a~~v~~~Amqv~GG~Gy~ee~~lerl~RDa~v~~I~eGt~~i~~ldv~r~l~~ 441 (538)
T PRK11561 389 GIPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNK 441 (538)
T ss_pred HHHHHHHHHHhcCCccCCCCcHHHHHHHHHhhhhcccCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999876
No 35
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=2.5e-52 Score=402.74 Aligned_cols=324 Identities=42% Similarity=0.692 Sum_probs=294.9
Q ss_pred HHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchh
Q 014993 35 TQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGL 114 (415)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~ 114 (415)
++.++++.+++|+.+.+.+.....++ ++. ..|+.|.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~g~~---------------------------------- 42 (327)
T cd00567 2 EQRELRDSAREFAAEELEPYARERRE---TPE--EPWELLAELGLL---------------------------------- 42 (327)
T ss_pred hHHHHHHHHHHHHHHhccccHHhHHh---hCC--CCHHHHHHHHHH----------------------------------
Confidence 34589999999999999887765554 334 457777788887
Q ss_pred HHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCE
Q 014993 115 SYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQT 194 (415)
Q Consensus 115 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~ 194 (415)
++...|..+|+++|+++|++.+.+|+.+++++++||.+|+|...+.+++++++|||+|||+|.|+|++..||+
T Consensus 43 -------~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~ 115 (327)
T cd00567 43 -------LGAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADL 115 (327)
T ss_pred -------hchHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCchhhCEeEEEEeCCEEEEEEEEEEecCCccCCE
Confidence 2334677789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCC-CCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhc
Q 014993 195 LVVYAKTDIKA-GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGL 273 (415)
Q Consensus 195 ~~v~a~~~~~~-~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~ 273 (415)
++|++++++++ +..++.+|+||++.|||++.+.|+++|+++++++++.|+||+||++++++..+. ++......+
T Consensus 116 ~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~l~~~~~-----g~~~~~~~~ 190 (327)
T cd00567 116 FIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGELVFDDVRVPEDNLLGEEGG-----GFELAMKGL 190 (327)
T ss_pred EEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEEEECCEEecHHHcCCCCCc-----hHHHHHHHH
Confidence 99999986432 345788999999999999999999999999999999999999999999998877 777778889
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhhhH
Q 014993 274 DLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDCAG 352 (415)
Q Consensus 274 ~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~~~~~ 352 (415)
...++..+++++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.+++++++++++.+++.++.+.. ....+.+
T Consensus 191 ~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 270 (327)
T cd00567 191 NVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQGPDEARLEAAM 270 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988754 5567889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHH
Q 014993 353 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGR 409 (415)
Q Consensus 353 ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~ 409 (415)
+|.++++.+.++++.++++|||.||+++++++|+|||++.+.+++|++++++..+++
T Consensus 271 ~k~~~~~~a~~~~~~~~~~~Gg~g~~~~~~l~r~~rd~~~~~~~~G~~~~~~~~~~~ 327 (327)
T cd00567 271 AKLFATEAAREVADLAMQIHGGRGYSREYPVERYLRDARAARIAEGTAEIQRLIIAR 327 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHccCccccCCCHHHHHHHhhhcceeecCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
No 36
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-51 Score=408.56 Aligned_cols=335 Identities=26% Similarity=0.300 Sum_probs=285.4
Q ss_pred cchhhhhhhccccccCCCCCCCCCC-CChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhc-CCCCCC
Q 014993 6 GARSLCASFFTKKQKHSAAFSSTSL-LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNF-NLHGIT 83 (415)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~-Gl~~l~ 83 (415)
...||.+.+|.-...-..-|.+|.. +++|+. +.++.|+.+ +-+.|+++ ||+++.
T Consensus 14 ~~~sf~~~lF~g~~~~~~~~pyP~~~~~~~~~----~~~~~~~~~--------------------~~~~~~~l~Gl~gl~ 69 (520)
T PTZ00457 14 RHASYAAGLFNFKIVPEEMFPYPCRKLDGDEA----ENLQSLLEQ--------------------IRSNDKILGNLYGAR 69 (520)
T ss_pred cCccHHHHhhCcccchhhcCCCCCCCCCHHHH----HHHHHHHHH--------------------HHhchHhcCCccCCC
Confidence 4678999999743332223434413 355666 333334321 11146789 999999
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC
Q 014993 84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 163 (415)
Q Consensus 84 ~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~ 163 (415)
+|++|||.|+++.+++.++|++++.+++.++.+..|..++...+..+|+++||++|||++++|+.+++++++| +.|||.
T Consensus 70 vPeeyGG~Gl~~~~~a~v~Eelgr~~~s~~l~~~~h~~l~~~~L~~~Gt~eqker~Lp~lasGe~i~A~AltE-~aGSD~ 148 (520)
T PTZ00457 70 IATEYGGLGLGHTAHALIYEEVGTNCDSKLLSTIQHSGFCTYLLSTVGSKELKGKYLTAMSDGTIMMGWATEE-GCGSDI 148 (520)
T ss_pred CChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCcEEEEEeCC-CCCCcc
Confidence 9999999999999999999999998877765555565456677888999999999999999999999999988 889999
Q ss_pred CCceeEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCC----CCC---CCCeEEEEEecCCCCeeeccccccccCCC
Q 014993 164 VGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDI----KAG---SKGITAFIIEKGMPGFSTAQKLDKLGMRG 235 (415)
Q Consensus 164 ~~~~t~a~~~-~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~----~~~---~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~ 235 (415)
..+.|+|+++ +|+|+|||+|.|+ ++..||+++|+|++++ +.+ ..++++|+||++.|||++..
T Consensus 149 a~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~--------- 218 (520)
T PTZ00457 149 SMNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG--------- 218 (520)
T ss_pred ccceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec---------
Confidence 9999999986 5579999999965 8999999999999853 111 25799999999999999852
Q ss_pred CCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHH
Q 014993 236 SDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFI 315 (415)
Q Consensus 236 ~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~v 315 (415)
++|+|||| |.+++||.++. |+..+...++.+|+.+++.++|+++++++.+++|++ +|.|
T Consensus 219 ---~eV~FddV--P~~~vLG~~g~-----G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaV 277 (520)
T PTZ00457 219 ---DSVVFENT--PAADVVGVVGE-----GFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGA 277 (520)
T ss_pred ---CEEEECCC--CHHHhCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHH
Confidence 58999997 99999999988 999999999999999999999999999999999987 4899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCchhhhHHHHHHH---HHHHHHHHHHHHhhccccccCcchHHHHHHhhc
Q 014993 316 QGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAA---ERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 391 (415)
Q Consensus 316 q~~la~~~~~l~aar~~~~~aa~~~d~~-~~~~~~~~~ak~~~~---~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~ 391 (415)
|++||+|.++++++|+++|++++.+|++ .+...+++++|+|++ +.++.++++++| .++|+||++||+|
T Consensus 278 q~~LAdma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~--------~~~~~E~~~rd~r 349 (520)
T PTZ00457 278 TDTVASFACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP--------PSTTLEKCFANAR 349 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc--------CCccHHHHHHHHH
Confidence 9999999999999999999999999997 456889999999999 889999998888 8999999999999
Q ss_pred cCcccCChHHHHH
Q 014993 392 LYEIGAGTSEIRR 404 (415)
Q Consensus 392 ~~~~~~G~~~~~~ 404 (415)
.+.|++|++++++
T Consensus 350 i~~i~egs~~~l~ 362 (520)
T PTZ00457 350 LFLSMMESRDFLY 362 (520)
T ss_pred HHHHhhhHHHHHH
Confidence 9999999999998
No 37
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-51 Score=416.69 Aligned_cols=304 Identities=20% Similarity=0.247 Sum_probs=268.9
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----e
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G 181 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln-----G 181 (415)
+++....+..|..++...|..+|+++|+++|||++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |
T Consensus 88 ~~~~~~~~~vh~~~~~~~I~~~GT~eQk~~~Lp~~~~ge~ig~~A~TEpghGSdv~~leTtAt~d~~~defvLntPt~~g 167 (646)
T PTZ00460 88 CPQGTFISTVHFAMVIPAFQVLGTDEQINLWMPSLLNFEIVGCYAQTELGHGSDVQNLETTATYDKQTNEFVIHTPSVEA 167 (646)
T ss_pred ccCCCceEEeeHhhHHHHHHHhCCHHHHHHHHHHHhCCChheeeeecCCCccCCcccceEEEEEcCCCCEEEECCCCCCe
Confidence 34444445566656777888999999999999999999999999999999999999999999996 6789998 9
Q ss_pred EeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEec-------CCCCeeeccccccccCCCCCceeEEEeeeeeCCCCc
Q 014993 182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-------GMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (415)
Q Consensus 182 ~k~~vs~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~~-------~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~l 253 (415)
+|.|++| +..||+++|+|++..+++..|+++|+||. ..|||++.+..+++|+++.+++.|.|+||+||.+++
T Consensus 168 ~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~~k~G~~~~dng~l~Fd~VrVP~~nl 247 (646)
T PTZ00460 168 VKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIGPKMGYAVKDNGFLSFDHYRIPLDSL 247 (646)
T ss_pred EEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccccccCcCCCCceEEEeceEEECHHHh
Confidence 9999998 68999999999997555567899999993 249999998999999999999999999999999999
Q ss_pred ccC------CCCCCCcch-HHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC------CCCcchHHHHHHH
Q 014993 254 LGQ------EGKGCNSFG-VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR------PLGEFQFIQGKTA 320 (415)
Q Consensus 254 lg~------~~~~~~~~g-~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~------pi~~~q~vq~~la 320 (415)
||. ++. ....| +......+..+|+.+++.++|++++|++.+++|+++|+|||+ ||++||.+|++|+
T Consensus 248 Lg~~~~v~~~G~-~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R~QFg~~~~~E~pI~~yQ~~Q~rLa 326 (646)
T PTZ00460 248 LARYIKVSEDGQ-VERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYRQQFTNDNKQENSVLEYQTQQQKLL 326 (646)
T ss_pred CCcccccCCCCc-cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCCcHhhhHHHHHHHH
Confidence 985 221 00013 556667778999999999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCC------CC------CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHH
Q 014993 321 DMYTALQSSRSYVYSVARDCDNG------KV------DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388 (415)
Q Consensus 321 ~~~~~l~aar~~~~~aa~~~d~~------~~------~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~R 388 (415)
+|.+++++++.+++++++.+++. .+ ....++++|+++++.+.+++++|+|+|||+||+.+++++++||
T Consensus 327 ~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~~q~~GG~Gy~~~~~l~~~~r 406 (646)
T PTZ00460 327 PLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNCAEWCRLSCGGHGYAHYSGLPAIYF 406 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCcHHHHHH
Confidence 99999999999999999988753 11 1346889999999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHHHh
Q 014993 389 DAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 389 da~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
|++...+++|++++++..+++.+++
T Consensus 407 da~~~~t~eG~n~vl~~~iar~ll~ 431 (646)
T PTZ00460 407 DMSPNITLEGENQIMYLQLARYLLK 431 (646)
T ss_pred HhccceeecCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998875
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=7.1e-50 Score=410.82 Aligned_cols=320 Identities=23% Similarity=0.246 Sum_probs=282.6
Q ss_pred CHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe
Q 014993 94 GYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV 173 (415)
Q Consensus 94 ~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~ 173 (415)
++.+...+.|++++.|++++..+..|..++...|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++
T Consensus 80 ~~~~~~~~~e~l~~~d~~~~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~~~~g~~ig~~a~TE~ghGSdv~~leTtAt~d 159 (610)
T cd01150 80 DPEKMLALTNSLGGYDLSLGAKLGLHLGLFGNAIKNLGTDEHQDYWLQGANNLEIIGCFAQTELGHGSNLQGLETTATYD 159 (610)
T ss_pred CHHHHHHHHHHHhccCccccceeeehHHHHHHHHHHhCCHHHHHHHHHHHhccChheeeeccccCcCcCcccceeEEEEC
Confidence 67788899999999999887667777767888899999999999999999999999999999999999999999999999
Q ss_pred C--CEEEEE-----eEeecccCCCC-CCEEEEEEEeCCCCCCCCeEEEEEecC-------CCCeeeccccccccCCCCCc
Q 014993 174 D--GGYIIN-----GNKMWCTNGPV-AQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDT 238 (415)
Q Consensus 174 ~--~g~~Ln-----G~k~~vs~~~~-ad~~~v~a~~~~~~~~~~~~~~lV~~~-------~~Gv~v~~~~~~~Gl~~~~~ 238 (415)
+ |+|+|| |+|.|++|++. |++++|+|++..+++..|+++|+||.. .|||++.+.++++|+++.++
T Consensus 160 ~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~~k~G~~g~dn 239 (610)
T cd01150 160 PLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIGPKMGLNGVDN 239 (610)
T ss_pred CCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecccccCCCCCCe
Confidence 8 899999 99999999854 999999999864444578999999963 39999999999999999999
Q ss_pred eeEEEeeeeeCCCCcccCCCC-----------CCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC
Q 014993 239 CELVFENCFVPNENVLGQEGK-----------GCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR 307 (415)
Q Consensus 239 ~~v~f~~v~Vp~~~llg~~~~-----------~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~ 307 (415)
+.+.|+||+||.+++|+..+. +....|+..+...+..+|+.+++.++|.++++++.+++|++.|+|||+
T Consensus 240 g~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~Ya~~R~qfg~ 319 (610)
T cd01150 240 GFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIRYSAVRRQFGP 319 (610)
T ss_pred EEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHeeeecCC
Confidence 999999999999999985211 001338888889999999999999999999999999999999999999
Q ss_pred C-------CCcchHHHHHHHHHHHHHHHHHHH----HHHHHH---HhhCCC-----CCchhhhHHHHHHHHHHHHHHHHH
Q 014993 308 P-------LGEFQFIQGKTADMYTALQSSRSY----VYSVAR---DCDNGK-----VDPKDCAGVILCAAERATQVTLQA 368 (415)
Q Consensus 308 p-------i~~~q~vq~~la~~~~~l~aar~~----~~~aa~---~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~a 368 (415)
| |++||.+|++|++|.+..++.+.. .+.+.+ .++++. +....++++|.++++.+.+++++|
T Consensus 320 ~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t~~a~~~~~~~ 399 (610)
T cd01150 320 KPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVATWTAAQGIQEC 399 (610)
T ss_pred CCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999987643 333222 344332 223468899999999999999999
Q ss_pred HHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 369 IQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 369 ~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+|+|||+||+.+++++++|||++...+++|++++++.++++.+++
T Consensus 400 rq~~GG~Gy~~~~~l~~l~~d~~~~~t~EG~n~vl~~~iar~ll~ 444 (610)
T cd01150 400 REACGGHGYLAMNRLPTLRDDNDPFCTYEGDNTVLLQQTANYLLK 444 (610)
T ss_pred HHHhcCccchhhcChHHHHhhccceeeeecchHhHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=9.4e-47 Score=387.83 Aligned_cols=298 Identities=20% Similarity=0.249 Sum_probs=258.8
Q ss_pred HhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----eEeecccC
Q 014993 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMWCTN 188 (415)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln-----G~k~~vs~ 188 (415)
+..|..+....|..+|+++|+++|+|++.+|+.++|+++|||++|||+.+++|+|+++ +|+|+|| |+|.|++|
T Consensus 99 ~~~~~~~f~~~I~~~GT~eQk~~~L~~~~~g~iig~fA~TE~ghGSdv~~leTtAt~d~~~~efvIntP~~~g~K~wig~ 178 (664)
T PLN02443 99 TDLHWGMFVPAIKGQGTEEQQKKWLPLAYKMQIIGCYAQTELGHGSNVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGG 178 (664)
T ss_pred eeehHhHHHHHHHHhCCHHHHHHHHHHHhCCChheEEEecCCCcccchhhCeEEEEEeCCCCEEEECCCCCCEEEEeecC
Confidence 3456556677788899999999999999999999999999999999999999999999 6889998 99999999
Q ss_pred C-CCCCEEEEEEEeCCCCCCCCeEEEEEecC-------CCCeeecccccccc---CCCCCceeEEEeeeeeCCCCcccCC
Q 014993 189 G-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVLGQE 257 (415)
Q Consensus 189 ~-~~ad~~~v~a~~~~~~~~~~~~~~lV~~~-------~~Gv~v~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~llg~~ 257 (415)
+ ..||+++|+|++..+++..|+++|+||.+ .|||++.+.++++| +++.+++.|.|+||+||.+++||..
T Consensus 179 ~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~ 258 (664)
T PLN02443 179 LGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIGMKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRL 258 (664)
T ss_pred CcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccccccCcccCCCCcceEEEeCcEEECHHHcCCcc
Confidence 7 78999999999865555678999999975 79999999999999 5668899999999999999999754
Q ss_pred CCCC-Ccch------HHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCC--cchHH-----HHHHHHHH
Q 014993 258 GKGC-NSFG------VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLG--EFQFI-----QGKTADMY 323 (415)
Q Consensus 258 ~~~~-~~~g------~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~--~~q~v-----q~~la~~~ 323 (415)
+.-. .... .......+..+|+.+++.++|++++|++.+++|+++|+|||+|++ ++|.+ |++|+++.
T Consensus 259 ~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrYa~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~l 338 (664)
T PLN02443 259 SKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRYSAVRRQFGSQDGGPETQVIDYKTQQSRLFPLL 338 (664)
T ss_pred cccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEeCCCCCCccchhhhhhHHHHHHHHHHH
Confidence 2100 0001 123445677889999999999999999999999999999999987 55555 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhC-------CC-C----CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhc
Q 014993 324 TALQSSRSYVYSVARDCDN-------GK-V----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK 391 (415)
Q Consensus 324 ~~l~aar~~~~~aa~~~d~-------~~-~----~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~ 391 (415)
+.+++++.+.+++++.+++ +. . ....++++|.++++.+.+++++|+|+|||+||+.++++++++||++
T Consensus 339 a~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~~a~~~i~~~rq~cGG~Gy~~~~~l~~l~~d~~ 418 (664)
T PLN02443 339 ASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYV 418 (664)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccccCcHHHHHhhhh
Confidence 9999999999999987763 11 1 1123789999999999999999999999999999999999999999
Q ss_pred cCcccCChHHHHHHHHHHHHHh
Q 014993 392 LYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 392 ~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
...+++|++++++.++++.+++
T Consensus 419 ~~~t~EGdn~Vl~~~iar~ll~ 440 (664)
T PLN02443 419 PACTYEGDNVVLLLQVARFLMK 440 (664)
T ss_pred cceeecCcHHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 40
>KOG1469 consensus Predicted acyl-CoA dehydrogenase [General function prediction only]
Probab=100.00 E-value=9.4e-48 Score=336.22 Aligned_cols=337 Identities=24% Similarity=0.342 Sum_probs=301.4
Q ss_pred HHHHHhcCCCCCCCCcCC--CCCCCCHHHHHHHHHHHHhccccchhHHhh--hhhHHHHHHHhcCCHHHHHHHhHhhhcC
Q 014993 71 WKLMGNFNLHGITAPQEY--GGLGLGYLYHCIAMEEISRASGSVGLSYGA--HSNLCINQLVRHGSPAQKDKYLPKLISG 146 (415)
Q Consensus 71 ~~~l~~~Gl~~l~~P~~~--GG~g~~~~~~~~v~e~la~~~~~~~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~l~~g 146 (415)
-+..+..|++.+.+|..- -|.|++..+++.++|.+++.-.. +-.+.+ ..+.....|..||++||+.+||-++++|
T Consensus 33 KE~aK~eGlWNLFlp~~~qkyg~GLtnveYa~icElmGrs~~A-PeVfNC~APDTGNMEvl~rYGseeQks~WL~PLLeG 111 (392)
T KOG1469|consen 33 KEMAKVEGLWNLFLPAVSQKYGAGLTNVEYAHICELMGRSFFA-PEVFNCQAPDTGNMEVLHRYGSEEQKSQWLIPLLEG 111 (392)
T ss_pred HHHHHhcchHHhhhHHHHHhhccCccchhHHHHHHHhcccccc-chhccCCCCCCCCeeehhhhCCHHHHhhHhHHHhcC
Confidence 344456899999999764 67899999999999999986422 222222 2223345788999999999999999999
Q ss_pred CceeEEEecCCC-CCCCCCCceeEEEEeCCEEEEEeEeecccCC--CCCCEEEEEEEeCCC--CCCCCeEEEEEecCCCC
Q 014993 147 EHVGALAMSEPN-AGSDVVGMKCKADRVDGGYIINGNKMWCTNG--PVAQTLVVYAKTDIK--AGSKGITAFIIEKGMPG 221 (415)
Q Consensus 147 ~~~~~~a~tep~-~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~--~~ad~~~v~a~~~~~--~~~~~~~~~lV~~~~~G 221 (415)
+...||++|||+ +.||..+++++.++++|.|++||+|+|+||+ +.|.+.+++.+++.. +.+...+++|||.++||
T Consensus 112 ~irScFaMTEP~VASSDATNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpG 191 (392)
T KOG1469|consen 112 NIRSCFAMTEPDVASSDATNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPG 191 (392)
T ss_pred CceeeEeecCCcccccccccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCC
Confidence 999999999999 5799999999999999999999999999998 678999999999765 45678899999999999
Q ss_pred eeeccccccccCCCCC--ceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHH
Q 014993 222 FSTAQKLDKLGMRGSD--TCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYV 299 (415)
Q Consensus 222 v~v~~~~~~~Gl~~~~--~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~ 299 (415)
|++..+....|....+ ..+|+|+||+||..|++-.++. |+...+-.+..+|++.|.-.+|.++++++...+.+
T Consensus 192 vkiiRpltVfG~~DapgGH~Ei~F~~VrVP~~NmlLGeGr-----GFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~ 266 (392)
T KOG1469|consen 192 VKIIRPLTVFGYTDAPGGHFEIHFENVRVPATNMLLGEGR-----GFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERA 266 (392)
T ss_pred eeEeeeeeeeccccCCCCcceEEEEEEEeeccceeecCCC-----cceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888887554 6789999999999999888888 99999999999999999999999999999999999
Q ss_pred HhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCchhhhHHHHHHHHHHHHHHHHHHHhhccccc
Q 014993 300 RQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGY 377 (415)
Q Consensus 300 ~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~--~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~ 377 (415)
..|..||+++..+..+.+.||+...++|.+|.++.+|++.+|.-. ....+++|+|+.+...+.++.+.|+|++||.|+
T Consensus 267 ~sRiaFgk~l~q~~s~~~diA~sRveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~ 346 (392)
T KOG1469|consen 267 LSRIAFGKKLVQHGSVAHDIAESRVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGV 346 (392)
T ss_pred HHHHHhcchhhhcchHHHHHHHHHhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999743 456689999999999999999999999999999
Q ss_pred cCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 378 VNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 378 ~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
..+.++.++|--++++++.+|.++++...|++.-++
T Consensus 347 s~~~~la~l~~~~r~lriadgPd~vhL~ai~~le~~ 382 (392)
T KOG1469|consen 347 SSDTPLANLYAIARVLRIADGPDEVHLSAIAKLELR 382 (392)
T ss_pred CCCceeeEEEEEeeeEEeccCCCccchhhhhhhhHH
Confidence 999999999999999999999999999999886554
No 41
>KOG0135 consensus Pristanoyl-CoA/acyl-CoA oxidase [Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.5e-33 Score=264.60 Aligned_cols=319 Identities=24% Similarity=0.319 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe-
Q 014993 95 YLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV- 173 (415)
Q Consensus 95 ~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~- 173 (415)
..-+..++|.++-.|.|++.-+..|..+.+..+..+|++.+++ |+..+-.-+.++|+|+||-++||+..+++|+|+.|
T Consensus 104 ~~k~~al~E~lg~yd~sls~K~~lh~~lfg~AV~~~GT~rH~~-yi~~~~n~ev~gcfamTEl~HGSNt~~I~TtatyDP 182 (661)
T KOG0135|consen 104 ELKKFALTEALGIYDQSLSAKLGLHFLLFGNAVKSMGTKRHHD-YIQKTENYEVKGCFAMTELGHGSNTKGIQTTATYDP 182 (661)
T ss_pred HHHHHHHHHHHhhcCcchhhhhhhhhhhhhHHHHhhccHHHHH-HHhhhhcceeeeeEEEeeecCCccccceeeeeeecC
Confidence 4467789999999999999999999988889999999998887 99999999999999999999999999999999999
Q ss_pred -CCEEEEE-----eEeecccCC-CCCCEEEEEEEeCCCCCCCCeEEEEEecC-------CCCeeeccccccccCCCCCce
Q 014993 174 -DGGYIIN-----GNKMWCTNG-PVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTC 239 (415)
Q Consensus 174 -~~g~~Ln-----G~k~~vs~~-~~ad~~~v~a~~~~~~~~~~~~~~lV~~~-------~~Gv~v~~~~~~~Gl~~~~~~ 239 (415)
.+.|++| -.|.||.|+ .+|.+.+|+++.--.+...|+..|+|+.. -|||+|.++-.+.|+.|.+++
T Consensus 183 ~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G~K~GlnGVDNG 262 (661)
T KOG0135|consen 183 TTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCGHKIGLNGVDNG 262 (661)
T ss_pred CCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccccccccccccCc
Confidence 6889998 589999996 67999999999865556679999999953 379999999999999999999
Q ss_pred eEEEeeeeeCCCCcccCCCCC------C-----CcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC-
Q 014993 240 ELVFENCFVPNENVLGQEGKG------C-----NSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR- 307 (415)
Q Consensus 240 ~v~f~~v~Vp~~~llg~~~~~------~-----~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~- 307 (415)
-+.|+||+||.+++|...++= . .++-+-.....+..+|+.++..++|.++-++..|++|...|+|||.
T Consensus 263 ~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIRYS~sRRQFGP~ 342 (661)
T KOG0135|consen 263 FLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIRYSLSRRQFGPT 342 (661)
T ss_pred eEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhhhHHhHhhhCCC
Confidence 999999999999998432110 0 0112333455678899999999999999999999999999999984
Q ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----------CCchhhhHHHHHHHHHHHHHHHHHHHh
Q 014993 308 ------PLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK----------VDPKDCAGVILCAAERATQVTLQAIQC 371 (415)
Q Consensus 308 ------pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~----------~~~~~~~~ak~~~~~~a~~~~~~a~~~ 371 (415)
||.++|..|+||--+.+...+.+-........+.+.. +....++..|.+++....++.++|.+.
T Consensus 343 ~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~~~~~LqecREA 422 (661)
T KOG0135|consen 343 KNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWHNMRALQECREA 422 (661)
T ss_pred CCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHhhHHHHHHHHHH
Confidence 4889999999999998888887776666655554321 112345678999999999999999999
Q ss_pred hccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 372 LGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 372 ~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
|||+||..++.+..+--|--.+..++|+|.|+.+++++.|+++
T Consensus 423 cGGhGYl~~nRlg~Lr~D~D~~~TfEGDNnVLlQqvsn~LL~~ 465 (661)
T KOG0135|consen 423 CGGHGYLQENRLGQLRDDHDPFQTFEGDNNVLLQQVSNALLAQ 465 (661)
T ss_pred hccchHHHHHHhcccccCCCccceeecCceeHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999874
No 42
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.96 E-value=1.2e-27 Score=238.09 Aligned_cols=232 Identities=18% Similarity=0.248 Sum_probs=195.7
Q ss_pred HHHHHHhHhhhcCCceeEEEecCCCCC-C----CCCCce---eEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCC
Q 014993 134 AQKDKYLPKLISGEHVGALAMSEPNAG-S----DVVGMK---CKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA 205 (415)
Q Consensus 134 ~q~~~~l~~l~~g~~~~~~a~tep~~g-s----d~~~~~---t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~ 205 (415)
+--.+|+..+.+.++..+.+++.|..- | ...++. -..++++|||+|||.|.|+|++ .||+++|+++++..+
T Consensus 127 ~n~~~y~~~~~~~dl~~~~a~~dp~~dRs~~~~~~~d~~~~~~Vve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~ 205 (477)
T TIGR02309 127 ENVRNYYEYLRDNDLALTHALTNPQVNRAKPPSEQPDPYIALGVVEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKA 205 (477)
T ss_pred HHHHHHHHHHHHhCceeeccccCCCCCCCCChhhcCCCCcceeEEEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCC
Confidence 345678899999999999999999732 1 111221 2457789999999999999996 999999999986543
Q ss_pred CC-CC--eEEEEEecCCCCeeeccccccccCCCC-----------CceeEEEeeeeeCCCCc--ccCC---CCCCCcchH
Q 014993 206 GS-KG--ITAFIIEKGMPGFSTAQKLDKLGMRGS-----------DTCELVFENCFVPNENV--LGQE---GKGCNSFGV 266 (415)
Q Consensus 206 ~~-~~--~~~~lV~~~~~Gv~v~~~~~~~Gl~~~-----------~~~~v~f~~v~Vp~~~l--lg~~---~~~~~~~g~ 266 (415)
+. .+ .++|+||.++|||++.....++|.++. ..+.|+||||+||++++ +|+. +. ++
T Consensus 206 ~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfde~da~vvFDdV~VPwe~VF~~g~~e~a~~-----~f 280 (477)
T TIGR02309 206 GAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFEEMDALVIFDDVLVPWERIFILGDVELCNN-----AY 280 (477)
T ss_pred ccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccCCCeEEEEeCceeccHHHhhhcCCHHHHHH-----HH
Confidence 32 23 789999999999999988888888876 56889999999999999 7876 54 55
Q ss_pred HHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--
Q 014993 267 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-- 344 (415)
Q Consensus 267 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~-- 344 (415)
.... ..+..+..++|.+..++|.++.|++. .+|+.++.++|.||++|+||.+.++++|++++++++..+.+.
T Consensus 281 ~~~~-----~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~VQ~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G 354 (477)
T TIGR02309 281 AATG-----AVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHVQEKIAEIIVYLEAMKAFWTRAEEEAKENAYG 354 (477)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCC
Confidence 4332 23666889999999999999999999 999999999999999999999999999999999999988853
Q ss_pred ---CCchhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014993 345 ---VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 378 (415)
Q Consensus 345 ---~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~ 378 (415)
+....++++|+++++...++. +++|++||.|++
T Consensus 355 ~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~ 390 (477)
T TIGR02309 355 LMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLI 390 (477)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEE
Confidence 456789999999999999995 999999999986
No 43
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.93 E-value=2.3e-24 Score=183.86 Aligned_cols=148 Identities=40% Similarity=0.608 Sum_probs=145.2
Q ss_pred hHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 014993 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 344 (415)
Q Consensus 265 g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~ 344 (415)
||..+...+..+|+.+++.++|.++.+++.+.+|+++|.+||+|+.++|.++++|+++.+++++++++++++++.++++.
T Consensus 3 G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~~~ 82 (150)
T PF00441_consen 3 GWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDAGQ 82 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHH
Q 014993 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALL 412 (415)
Q Consensus 345 ~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~ 412 (415)
....+.+++|+++++.+.++++.+++++|+.||..+++++++|||++.+.+++|+++++++.|++++|
T Consensus 83 ~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~~~~~l~~~~rda~~~~i~~G~~ev~~~~ia~~~l 150 (150)
T PF00441_consen 83 NDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLTEDNPLERLYRDARAFTIYGGTNEVQRNQIARRLL 150 (150)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHGGTSTSTHHHHHHHHHHHHH
T ss_pred ccccccchhhhhcccccccchhhhhhhhhhhhhcccCHHHHHHhhcceeeeccCCHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999999999999999999999999999999999999986
No 44
>KOG0136 consensus Acyl-CoA oxidase [Lipid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=205.39 Aligned_cols=305 Identities=20% Similarity=0.256 Sum_probs=239.4
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeC--CEEEEE-----e
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVD--GGYIIN-----G 181 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~--~g~~Ln-----G 181 (415)
.+.-+..+..|..+....|..-|++||.++|+++....+.++|+|-||-++|+++..++|+|+.+. +.|+|| .
T Consensus 104 ~~~~~~pl~lH~~MFvp~l~~q~t~EQ~~~Wl~~a~~~~IiGtYAQTElGHGTnl~~LET~AtyD~~T~eFVl~TPt~ta 183 (670)
T KOG0136|consen 104 LGQEGHPLALHYGMFVPTLKGQGTDEQQEKWLSRALNMEIIGTYAQTELGHGTNLRGLETTATYDPKTQEFVLNTPTLTA 183 (670)
T ss_pred cccCCchhhhhhhhhhhHhhcCCCHHHHHHHHHhcccceEEEeehhhhhcccccccccceeeeecCCcceEEecCCCcce
Confidence 344444556787788889999999999999999999999999999999999999999999999986 469986 7
Q ss_pred EeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEecC-------CCCeeeccccccccCCCCCceeEEEeeeeeCCCCc
Q 014993 182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEKG-------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (415)
Q Consensus 182 ~k~~vs~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~-------~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~l 253 (415)
.|+|..+ +..+.|.+|.|+.-..+...|+..|+||.. -|||++++.-.+||..+.+++-+-|+||+||.++.
T Consensus 184 ~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG~Kmg~ng~dNGfL~f~nvRIPR~nm 263 (670)
T KOG0136|consen 184 TKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIGPKMGFNGVDNGFLGFDNVRIPRTNM 263 (670)
T ss_pred ecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCCccccccCCccceeeecceeechHhh
Confidence 8888877 466899999999866556778999999964 37999999999999999999999999999999998
Q ss_pred ccCC------CCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccC----C---CCCcchHHHHHHH
Q 014993 254 LGQE------GKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG----R---PLGEFQFIQGKTA 320 (415)
Q Consensus 254 lg~~------~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g----~---pi~~~q~vq~~la 320 (415)
+-.. |.-....-.......+-..|..+.....=....|.-.|++|+..|+|+. . .|.|+|..|++|-
T Consensus 264 Lmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVRRQ~~i~pg~~E~qIlDyqTQQ~rlF 343 (670)
T KOG0136|consen 264 LMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVRRQSEIRPGQPEVQILDYQTQQYRLF 343 (670)
T ss_pred hhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCceeeechhHHHHHh
Confidence 7321 1000000001111122233444444445556678889999999999974 3 3899999999988
Q ss_pred HHHHHHHHHHHHHHHH-------HHHhhCCC-----CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHH
Q 014993 321 DMYTALQSSRSYVYSV-------ARDCDNGK-----VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388 (415)
Q Consensus 321 ~~~~~l~aar~~~~~a-------a~~~d~~~-----~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~R 388 (415)
-..+.-.+-+-..... ...++++. +.-...+..|..++..+.+-++.|.+.|||+||+.-+.+..+|-
T Consensus 344 P~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~GIE~~R~aCGGHGYs~~Sglp~iY~ 423 (670)
T KOG0136|consen 344 PQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQGIEQCRLACGGHGYSQASGLPEIYG 423 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhhHHHHHHHhcCCccchhhcCCcccee
Confidence 7776655544433332 23333432 22234567899999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHHHh
Q 014993 389 DAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 389 da~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.+-....++|.|.|+..+++|.|.|
T Consensus 424 ~~v~~CTYEGEN~VmlLQ~ARfLmK 448 (670)
T KOG0136|consen 424 VAVGACTYEGENTVLLLQVARFLVK 448 (670)
T ss_pred eeeeeeeeeccceeehHHHHHHHHH
Confidence 9999999999999999999999987
No 45
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=99.80 E-value=1.4e-19 Score=146.65 Aligned_cols=112 Identities=41% Similarity=0.776 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccch
Q 014993 34 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVG 113 (415)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~ 113 (415)
|++.+|++.+++|+++++.|...++|+++.+|+ ++|+++++.||+++.+|++|||.|+++.+.+.++++|++.|++++
T Consensus 2 ~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~G~~~~~~p~~~GG~~~~~~~~~~~~e~l~~~~~~~~ 79 (113)
T PF02771_consen 2 EEQQALREEAREFAEEEIAPHAAEWDEDGRFPR--EVWRALGEAGLLGLAVPEEYGGLGLSPLELAIVLEELARADASLA 79 (113)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCHH--HHHHHHHHTTTTSTTSCGGGTSEB-THHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHchHHHHHHHHhCCCCH--HHHHHHHHHHHhhhhccccccCcchhhhhHHHHHHhhhhhccccc
Confidence 455599999999999999999999988889998 999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCC
Q 014993 114 LSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGE 147 (415)
Q Consensus 114 ~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~ 147 (415)
+++..|..++...|..+|+++|+++|+|++++|+
T Consensus 80 ~~~~~~~~l~~~~i~~~gs~eq~~~~lp~~~~Ge 113 (113)
T PF02771_consen 80 FALGVHQSLGAPPIAKFGSEEQKEKWLPRLASGE 113 (113)
T ss_dssp HHHHHHHHCHHHHHHHHSHHHHHHHHHHHHHTTS
T ss_pred chhhhhhHHHHHHHHHHCCHHHHHHHhHHHhCCC
Confidence 8888886567789999999999999999999986
No 46
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.68 E-value=5.6e-16 Score=129.47 Aligned_cols=123 Identities=24% Similarity=0.303 Sum_probs=107.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhcc--cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCC----c
Q 014993 278 LVLAAGPLGIMQACLDVVLPYVRQREQ--FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NGKVD----P 347 (415)
Q Consensus 278 ~~~aa~~~G~a~~al~~a~~~~~~R~~--~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d----~~~~~----~ 347 (415)
+.+++.++|++++++++++++++.|.. .+.++.+.|.+|.+|+++.+.+++++++++++++.++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 467899999999999999999999887 6789999999999999999999999999999999844 55432 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChH
Q 014993 348 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS 400 (415)
Q Consensus 348 ~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~ 400 (415)
....+.|.++.+.+.++++.+++++|+.++...+|++|+|||+++...|...+
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~~~~pl~R~~RD~~~~~~H~~~~ 133 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALYRSSPLERIWRDVRAGAQHPALN 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGBTTSHHHHHHHHHHHHTTSGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhhcCCcHHHHHHHHHHHhhCcccC
Confidence 34667899999999999999999999999999999999999999999987654
No 47
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=2.7e-14 Score=137.21 Aligned_cols=237 Identities=16% Similarity=0.209 Sum_probs=163.2
Q ss_pred HHHHHHhHhhhcCCceeEEEecCCCCCC-----CCC--Ccee-EEEEeCCEEEEEeEeecccCCCCCCEEEEE-EEeCCC
Q 014993 134 AQKDKYLPKLISGEHVGALAMSEPNAGS-----DVV--GMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVY-AKTDIK 204 (415)
Q Consensus 134 ~q~~~~l~~l~~g~~~~~~a~tep~~gs-----d~~--~~~t-~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~-a~~~~~ 204 (415)
+-..+|+..++..++..+.++|.|..-- ... .+-. ..++.+||.+|+|.|..+|+++.+|.++|+ .+....
T Consensus 131 ~n~~~~~k~vqk~DL~~~hA~tdpk~dRsk~p~e~~dpdiyvrVvee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~ 210 (493)
T COG2368 131 ENAREYYKEVQKNDLALTHAITDPKGDRSKRPSEQKDPDIYVRVVEETEDGIVVRGAKALATGSALTDEIFVLPTRSMQE 210 (493)
T ss_pred HHHHHHHHHHHhcCceeeeceecCCccCCCChhhccCCCeeEEEEEEecCceEEEChHHHhccccccceEEEeeccccCC
Confidence 4456789999999999999999987321 111 1222 346668999999999999999999999998 444333
Q ss_pred CCCCCeEEEEEecCCCCeeecccc---ccccCCCCCc------------eeEEEeeeeeCCCCccc--CCCCCCCcchHH
Q 014993 205 AGSKGITAFIIEKGMPGFSTAQKL---DKLGMRGSDT------------CELVFENCFVPNENVLG--QEGKGCNSFGVY 267 (415)
Q Consensus 205 ~~~~~~~~~lV~~~~~Gv~v~~~~---~~~Gl~~~~~------------~~v~f~~v~Vp~~~llg--~~~~~~~~~g~~ 267 (415)
+..+--..|.||.++|||++.... ..-|+.+.+. +-|+||||+||+++++= +... -..+.
T Consensus 211 ~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrfde~dailVfDdVfVPWERVf~y~d~~~---~~~~~ 287 (493)
T COG2368 211 DDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRFDENDAILVFDDVFVPWERVFIYRDLER---AYAWY 287 (493)
T ss_pred CCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCccccccccCceEEEecccccchhheeeeccHHH---HHHHH
Confidence 334456789999999999976322 1222222332 23999999999999873 2220 00222
Q ss_pred HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---
Q 014993 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK--- 344 (415)
Q Consensus 268 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~--- 344 (415)
....+..+.+...+.+-.+...-.+-.+..-++.- .+.+|++||.+|+||.+..|.++++...++.......
T Consensus 288 ~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~-----Gv~~~~hIq~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~ 362 (493)
T COG2368 288 AVSGFARLHRQQAVGRKAVKLDFILGAAYLIAETN-----GVEEFRHIQEKLGEMIALLELMWALSDAAAEEAQKNPNGA 362 (493)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh-----CccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc
Confidence 22223334444444444444333333332222211 4678999999999999999999999999998776543
Q ss_pred --CCchhhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014993 345 --VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYV 378 (415)
Q Consensus 345 --~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~ 378 (415)
++...+...|.++...-.++.+.+.++.||.-.+
T Consensus 363 ~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~i~ 398 (493)
T COG2368 363 WLPNPAYANVGRVYAPKAYPRIKEILQDISGGGIIT 398 (493)
T ss_pred eecCHHHHhhHHHhcccchHHHHHHHHHHhcCceee
Confidence 5667789999999999999999999999875544
No 48
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.58 E-value=3.4e-15 Score=102.42 Aligned_cols=52 Identities=42% Similarity=0.763 Sum_probs=47.3
Q ss_pred EEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeC
Q 014993 151 ALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTD 202 (415)
Q Consensus 151 ~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~ 202 (415)
|+++|||++|+|+..+++++++++++|+|||+|.||++++.||+++|+||++
T Consensus 1 ~~a~tE~~~g~d~~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 1 AFALTEPGAGSDLAAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp EEE--BTTBSSSGGG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred CEEEcCCCCCCCcccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999974
No 49
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.56 E-value=1.1e-12 Score=130.56 Aligned_cols=228 Identities=16% Similarity=0.159 Sum_probs=150.4
Q ss_pred HHHHHHhHhhhcCCceeEEEecCCCCC-C----CCCCce-eEEEEeCCEEEEEeEeecccCCCCCCEEEE-EEEeCC-CC
Q 014993 134 AQKDKYLPKLISGEHVGALAMSEPNAG-S----DVVGMK-CKADRVDGGYIINGNKMWCTNGPVAQTLVV-YAKTDI-KA 205 (415)
Q Consensus 134 ~q~~~~l~~l~~g~~~~~~a~tep~~g-s----d~~~~~-t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v-~a~~~~-~~ 205 (415)
+--.+|+..+.+.++..+.+++.|..- | ....+- -..+++++|.+|+|.|...|+++.+|.++| .....- .+
T Consensus 136 ~n~~~yy~~~qenDL~~~hA~~dPk~DRsk~p~e~~D~~v~VVee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~ 215 (519)
T TIGR02310 136 DNARNWYKRIQESCLYFNHAIVNPPIDRNKPIDQVKDVYIKIEEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGD 215 (519)
T ss_pred HHHHHHHHHHHHhCceeecceeCCCCCCCCccccCCCCceEEEEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCC
Confidence 346678889999999999999998732 1 111122 345677899999999999999999999998 444311 12
Q ss_pred CCCCeEEEEEecCCCCeeeccccccccCC----CC------------CceeEEEeeeeeCCCCcccCCCCC-CC----cc
Q 014993 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMR----GS------------DTCELVFENCFVPNENVLGQEGKG-CN----SF 264 (415)
Q Consensus 206 ~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~----~~------------~~~~v~f~~v~Vp~~~llg~~~~~-~~----~~ 264 (415)
..+--..|.||.++|||++.... ...+. ++ .-+-|+||||+||+++|+=-.+.. .. ..
T Consensus 216 d~dyAvaFavP~dtpGlk~IcR~-s~~~~~~~~~~~fD~PlssrfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~ 294 (519)
T TIGR02310 216 NDDFALMFIAPMDAEGVKLICRH-SYELVAGATGSPFDYPLSSRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYG 294 (519)
T ss_pred CCCeEEEEEeEcCCCceEEEeCC-chhhccccCCCCCcCccccccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhh
Confidence 23345689999999999987322 22111 11 124599999999999997322100 00 00
Q ss_pred hHHHHHhhchHHH-HHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 014993 265 GVYVMMSGLDLER-LVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG 343 (415)
Q Consensus 265 g~~~~~~~~~~~r-~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~ 343 (415)
++..........| +..+=..+|++..+.+.. .+..+|+||.+|+||....|..+++...+.......
T Consensus 295 ~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~~------------G~~~~~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~ 362 (519)
T TIGR02310 295 GFARLFPMQACTRLAVKLDFITGLLHKALQCT------------GVLEFRGVQAQMGEVVAWRNLFWTLTDAMAGSAYQW 362 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Confidence 1111111000111 122333444444433332 456899999999999999999999998887765543
Q ss_pred C-----CCchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 014993 344 K-----VDPKDCAGVILCAAERATQVTLQAIQCLGG 374 (415)
Q Consensus 344 ~-----~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg 374 (415)
. ++...+..+|.+.++.-.++.+.+.++.||
T Consensus 363 ~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 363 KNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred CCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 2 556678899999999999999988866654
No 50
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=98.88 E-value=1.5e-08 Score=92.89 Aligned_cols=121 Identities=21% Similarity=0.371 Sum_probs=77.6
Q ss_pred HHHHHHhHhhhcCCceeEEEecCCCCC-CC-C--CC--cee-EEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCC-C
Q 014993 134 AQKDKYLPKLISGEHVGALAMSEPNAG-SD-V--VG--MKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIK-A 205 (415)
Q Consensus 134 ~q~~~~l~~l~~g~~~~~~a~tep~~g-sd-~--~~--~~t-~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~-~ 205 (415)
+-..+|+..+.+.++..+.+++.|..- |- . .. +-. ..++++||.+|+|.|...|+++.+|.++|+-...-. +
T Consensus 123 ~n~~~y~~~~~~ndL~~t~a~~dPq~DRs~~~~q~d~d~~lrVVee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~ 202 (264)
T PF11794_consen 123 ENIRRYYEYVQENDLFLTHAITDPQGDRSKPPHQEDPDVYLRVVEETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPG 202 (264)
T ss_dssp HHHHHHHHHHHHHT--EEEEES--SSSTTSTGGSSSCCSB-EEEEE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTC
T ss_pred HHHHHHHHHHHHhCcEeeeeeeCCCcCCCCCccccCCCceEEEEEEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCC
Confidence 345678888899999999999999731 11 1 11 223 356778999999999999999999999998765422 2
Q ss_pred CCCCeEEEEEecCCCCeeeccccccccCCCC------------CceeEEEeeeeeCCCCcc
Q 014993 206 GSKGITAFIIEKGMPGFSTAQKLDKLGMRGS------------DTCELVFENCFVPNENVL 254 (415)
Q Consensus 206 ~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~------------~~~~v~f~~v~Vp~~~ll 254 (415)
...-...|.||.++||+++.........+.+ .-+-|.||||+||+++++
T Consensus 203 d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 203 DEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEMDALVVFDDVFVPWERVF 263 (264)
T ss_dssp CGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----EEEEEEEEEEEEGGGEE
T ss_pred CCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCceEEEEECCcccchhhcc
Confidence 3345678999999999998643221111101 114599999999999875
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=96.81 E-value=0.019 Score=51.29 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHH-hHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCchhh
Q 014993 277 RLVL-AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-----VDPKDC 350 (415)
Q Consensus 277 r~~~-aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~-----~~~~~~ 350 (415)
|..+ +=..+|++....+.. .+.++|+||.+|+|+...+|..++++..+........ |+....
T Consensus 23 R~~~K~ef~~G~a~~~ae~~------------G~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~ 90 (205)
T PF03241_consen 23 RAAVKLEFLLGLAQLIAEAN------------GIDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPL 90 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------------TGTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHH
Confidence 4444 555666666555543 4678999999999999999999999998877655432 566778
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccC
Q 014993 351 AGVILCAAERATQVTLQAIQCLGGNGYVN 379 (415)
Q Consensus 351 ~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~ 379 (415)
..+|.+.++...++++.+.+++||.-.+-
T Consensus 91 ~a~r~~~~~~y~r~~eil~~l~gg~li~~ 119 (205)
T PF03241_consen 91 NAARNYFPKNYPRIVEILQDLGGGGLITL 119 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeC
Confidence 99999999999999999999998876653
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=93.96 E-value=0.7 Score=47.25 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=66.1
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchH
Q 014993 305 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT 383 (415)
Q Consensus 305 ~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~-~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~ 383 (415)
+|+.|.+.|.+..||+|+.+++.++-+.+-++...+..+.+. ..+..+++.||.+...++-..+-+++.. ++..+..+
T Consensus 429 ~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~-~~~~~~~~ 507 (520)
T PTZ00457 429 SGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV-GKTADDSY 507 (520)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccchHHH
Confidence 578899999999999999999999999999999888887543 3456799999999999998888888887 66654434
Q ss_pred H
Q 014993 384 G 384 (415)
Q Consensus 384 ~ 384 (415)
.
T Consensus 508 ~ 508 (520)
T PTZ00457 508 K 508 (520)
T ss_pred H
Confidence 3
No 53
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A.
Probab=89.20 E-value=0.43 Score=38.86 Aligned_cols=33 Identities=30% Similarity=0.473 Sum_probs=27.4
Q ss_pred HhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCc
Q 014993 116 YGAHSNLCINQLVRHGSPAQKDKYLPKLISGEH 148 (415)
Q Consensus 116 ~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~ 148 (415)
+..|.++....|...||+||+++|+|+..+.+.
T Consensus 92 ~~lH~~mFip~I~~qgt~EQ~~~Wlp~a~~~~I 124 (125)
T PF14749_consen 92 LGLHFGMFIPTIMGQGTEEQQAKWLPKAENYEI 124 (125)
T ss_dssp HHHHHHTHHHHHHHHS-HHHHHHHHHHHHTTSS
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHCCcc
Confidence 347877888999999999999999999877664
No 54
>KOG0137 consensus Very-long-chain acyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=85.22 E-value=18 Score=37.07 Aligned_cols=92 Identities=15% Similarity=0.090 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhhhHHHHHHHH
Q 014993 281 AAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-VDPKDCAGVILCAAE 359 (415)
Q Consensus 281 aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~-~~~~~~~~ak~~~~~ 359 (415)
++..+=.+-..+..+++-.-. .+|+.|.+.|.+-++||+..+.+.++-+.+-+|.+.+..+- ....+...+..+|+|
T Consensus 511 saq~~e~~~~~~~~~Ve~ll~--k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~e 588 (634)
T KOG0137|consen 511 SAQKLESSLARFQQVVEKLLT--KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSE 588 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHH
Confidence 343333333334444433322 36889999999999999999999999999999999999884 455688999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 014993 360 RATQVTLQAIQCLGG 374 (415)
Q Consensus 360 ~a~~~~~~a~~~~Gg 374 (415)
...++-..+-++-++
T Consensus 589 a~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 589 ASLRVLRWLWAASSG 603 (634)
T ss_pred HHHHHHHHHHHhccc
Confidence 888888777777666
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=52.02 E-value=2.6e+02 Score=30.50 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=65.5
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHH
Q 014993 305 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATG 384 (415)
Q Consensus 305 ~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~ 384 (415)
.|+.|...|.+..||+|+.+++.++-+.+.++- +++.+.. ...++.+++.+...++-+..-++..... ...+.
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~n~p---~~~~~ 631 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPEA-DLPLVHWAVQDALYQAEQALDGLLRNFP---NRVVA 631 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHcCC---chHHH
Confidence 477888999999999999999999998887765 4443322 2567777777765555544445544332 22344
Q ss_pred HHHHhhccCc---ccCChHHHHHHHHHHHHHh
Q 014993 385 RLLRDAKLYE---IGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 385 r~~Rda~~~~---~~~G~~~~~~~~i~~~l~~ 413 (415)
..+|-. .+. .+.+.+|-+...+++.+..
T Consensus 632 ~~~~~~-~~p~g~~~~~p~d~~~~~~~~~~~~ 662 (777)
T PRK09463 632 GLLRVL-VFPLGRRYRAPSDKLDHQVAKLLQT 662 (777)
T ss_pred HHHHHe-eeCCCCCCCCCCHHHHHHHHHHHhC
Confidence 444433 333 3456667777777777764
No 56
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=25.29 E-value=1.4e+02 Score=23.55 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=39.2
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCC-CCCceeEEEeeeee
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMR-GSDTCELVFENCFV 248 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~-~~~~~~v~f~~v~V 248 (415)
-.++..+|.......+..+.+.+++-+.+ ++++..-|.+.+-. +.+.-+|.+||=..
T Consensus 23 ~~~~i~lvP~~~~~~e~aPdyRV~~~~~~--~~EvGaaW~~~~~~tg~~Ylsl~LddP~f 80 (107)
T PF05284_consen 23 LDAKIRLVPNESKDSENAPDYRVYAGPRG--GVEVGAAWKKTSKDTGRDYLSLKLDDPSF 80 (107)
T ss_pred ecccEEEEeCCCCCCCCCCCEEEEecCCC--CCceeeeehhhccccCCceEEEEEcCCCC
Confidence 34566666655423334455556555444 89999999999988 88889999998543
No 57
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=22.42 E-value=3.2e+02 Score=24.55 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=48.3
Q ss_pred ccCCCCCcHHHHHHHHh-cCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHH
Q 014993 60 QSNSFPQDVNLWKLMGN-FNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDK 138 (415)
Q Consensus 60 ~~~~~p~~~~~~~~l~~-~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~ 138 (415)
++..+.. +++++++. +|-..+-+|.+- -++.++-.+++.|-. ...+|+..|+++.|+.
T Consensus 97 EetTISA--Kvm~~ikavLgaTKiDLPVDI----NDPYDlGLLLRhLRH---------------HSNLLAnIgdP~Vreq 155 (238)
T PF02084_consen 97 EETTISA--KVMEDIKAVLGATKIDLPVDI----NDPYDLGLLLRHLRH---------------HSNLLANIGDPEVREQ 155 (238)
T ss_pred CCccccH--HHHHHHHHHhccccccccccc----CChhhHHHHHHHHHH---------------HHHHHhhcCCHHHHHH
Confidence 4556666 88888886 788999999652 277777777766532 2346778899999999
Q ss_pred HhHhhhcC
Q 014993 139 YLPKLISG 146 (415)
Q Consensus 139 ~l~~l~~g 146 (415)
.|..+.+.
T Consensus 156 VLsAMqEe 163 (238)
T PF02084_consen 156 VLSAMQEE 163 (238)
T ss_pred HHHHHhhh
Confidence 99887754
No 58
>PF05428 CRF-BP: Corticotropin-releasing factor binding protein (CRF-BP); InterPro: IPR008435 This family consists of several eukaryotic corticotropin-releasing factor binding proteins (CRF-BP or CRH-BP). Corticotropin-releasing hormone (CRH) plays multiple roles in vertebrate species. In mammals, it is the major hypothalamic releasing factor for pituitary adrenocorticotropin secretion, and is a neurotransmitter or neuromodulator at other sites in the central nervous system. In non-mammalian vertebrates, CRH not only acts as a neurotransmitter and hypophysiotropin, it also acts as a potent thyrotropin-releasing factor, allowing CRH to regulate both the adrenal and thyroid axes, especially in development. CRH-BP is thought to play an inhibitory role in which it binds CRH and other CRH-like ligands and prevents the activation of CRH receptors. There is however evidence that CRH-BP may also exhibit diverse extra and intracellular roles in a cell specific fashion and at specific times in development [].
Probab=22.16 E-value=94 Score=29.16 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.9
Q ss_pred CCEEEEEeEeecccC
Q 014993 174 DGGYIINGNKMWCTN 188 (415)
Q Consensus 174 ~~g~~LnG~k~~vs~ 188 (415)
=|||+|||+|...+.
T Consensus 113 ~DGW~LnGe~FPs~~ 127 (311)
T PF05428_consen 113 FDGWELNGEKFPSSQ 127 (311)
T ss_pred EeceEECccCCcCcc
Confidence 379999999976554
No 59
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=22.13 E-value=2e+02 Score=23.91 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=26.3
Q ss_pred EEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCC-----CCeeeccc
Q 014993 170 ADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGM-----PGFSTAQK 227 (415)
Q Consensus 170 a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~-----~Gv~v~~~ 227 (415)
...+.+.|.|+|+|...--. .++....+.+.|+|... |.|++...
T Consensus 64 i~a~~~~WlV~Grrrg~f~~-------------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~ 113 (147)
T PF12584_consen 64 IVADSDNWLVSGRRRGVFSL-------------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPY 113 (147)
T ss_pred EecCCCcEEEeccCcceEEe-------------cCCCeEEEEEEEEecccceecCCEEEEEec
Confidence 34567779999999743211 11223356677777643 56666543
Done!