Query 014993
Match_columns 415
No_of_seqs 215 out of 1372
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 04:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014993.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014993hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jif_A Short/branched chain sp 100.0 2E-74 6.9E-79 570.1 41.5 396 4-414 8-403 (404)
2 3r7k_A Probable acyl COA dehyd 100.0 2.5E-74 8.7E-79 569.6 41.1 378 26-411 23-401 (403)
3 1ukw_A Acyl-COA dehydrogenase; 100.0 3.5E-74 1.2E-78 564.4 41.1 374 32-413 5-378 (379)
4 3pfd_A Acyl-COA dehydrogenase; 100.0 7.5E-75 2.6E-79 571.7 36.5 376 30-413 17-393 (393)
5 2d29_A Acyl-COA dehydrogenase; 100.0 6.6E-74 2.2E-78 564.0 43.0 378 30-414 5-386 (387)
6 3p4t_A Putative acyl-COA dehyd 100.0 7.8E-74 2.7E-78 566.1 42.0 381 23-411 17-399 (403)
7 3nf4_A Acyl-COA dehydrogenase; 100.0 1.5E-73 5.3E-78 561.5 41.4 374 30-413 14-387 (387)
8 1buc_A Butyryl-COA dehydrogena 100.0 1.2E-73 4E-78 561.6 40.0 375 32-413 5-383 (383)
9 1egd_A Medium chain acyl-COA d 100.0 1.3E-73 4.6E-78 563.4 40.2 377 30-414 14-393 (396)
10 2vig_A Short-chain specific ac 100.0 2E-73 6.7E-78 561.3 41.3 375 32-413 6-380 (391)
11 2dvl_A Acyl-COA dehydrogenase; 100.0 4E-73 1.4E-77 555.6 40.8 369 33-413 4-372 (372)
12 2pg0_A Acyl-COA dehydrogenase; 100.0 8.2E-73 2.8E-77 555.8 42.6 371 32-411 10-383 (385)
13 1rx0_A Acyl-COA dehydrogenase 100.0 7.8E-73 2.7E-77 557.2 42.1 374 32-414 19-393 (393)
14 3ii9_A Glutaryl-COA dehydrogen 100.0 6.3E-74 2.2E-78 565.7 33.5 379 27-414 14-392 (396)
15 1ivh_A Isovaleryl-COA dehydrog 100.0 7.8E-73 2.7E-77 557.5 41.0 378 32-414 13-392 (394)
16 3sf6_A Glutaryl-COA dehydrogen 100.0 5.3E-73 1.8E-77 560.1 37.8 373 28-414 26-399 (403)
17 3swo_A Glutaryl-COA dehydrogen 100.0 7.5E-73 2.6E-77 558.5 37.7 372 29-414 23-394 (399)
18 2eba_A Putative glutaryl-COA d 100.0 4.7E-72 1.6E-76 550.4 40.3 370 32-413 11-381 (385)
19 2ix5_A Acyl-coenzyme A oxidase 100.0 5.4E-72 1.8E-76 557.0 40.4 373 30-414 53-425 (436)
20 3mpi_A Glutaryl-COA dehydrogen 100.0 3.9E-72 1.3E-76 553.3 35.0 372 31-411 4-382 (397)
21 1r2j_A Protein FKBI; polyketid 100.0 4.3E-72 1.5E-76 547.0 33.5 361 41-414 2-364 (366)
22 4hr3_A Putative acyl-COA dehyd 100.0 1.2E-71 4E-76 552.9 35.6 378 30-414 7-411 (415)
23 3owa_A Acyl-COA dehydrogenase; 100.0 3.4E-71 1.2E-75 568.6 38.2 372 30-413 31-424 (597)
24 1siq_A GCD, glutaryl-COA dehyd 100.0 5.3E-70 1.8E-74 537.1 39.1 372 30-414 12-385 (392)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 1.1E-69 3.6E-74 557.8 36.6 392 7-413 6-414 (577)
26 2uxw_A VERY-long-chain specifi 100.0 1.5E-68 5E-73 550.6 39.9 398 5-411 20-428 (607)
27 3mkh_A Nitroalkane oxidase; ox 100.0 9.2E-69 3.1E-73 535.7 33.0 378 30-414 5-417 (438)
28 2c12_A Nitroalkane oxidase; ox 100.0 1.2E-67 4E-72 527.8 36.5 376 32-413 6-419 (439)
29 2wbi_A Acyl-COA dehydrogenase 100.0 6.1E-68 2.1E-72 527.8 32.8 378 28-413 19-418 (428)
30 3mxl_A Nitrososynthase; flavin 100.0 2.6E-65 9E-70 504.4 28.1 367 30-414 7-394 (395)
31 2or0_A Hydroxylase; APC7385, r 100.0 9.2E-65 3.1E-69 503.2 26.8 366 29-414 15-402 (414)
32 2jbr_A P-hydroxyphenylacetate 100.0 3.8E-64 1.3E-68 499.9 28.6 358 38-414 39-415 (422)
33 3m9v_A FAD-dependent oxidoredu 100.0 1.8E-63 6.1E-68 497.6 32.4 368 29-414 17-405 (439)
34 2rfq_A 3-HSA hydroxylase, oxyg 100.0 1.5E-63 5E-68 491.7 30.3 357 38-414 11-387 (394)
35 1w07_A Acyl-COA oxidase; oxido 100.0 2E-56 6.7E-61 464.8 29.2 369 33-413 28-440 (659)
36 3djl_A Protein AIDB; alpha hel 100.0 8.8E-56 3E-60 449.0 31.8 328 67-414 88-442 (541)
37 2ddh_A Acyl-COA oxidase; beta 100.0 3E-52 1E-56 432.8 30.1 366 34-413 27-437 (661)
38 1u8v_A Gamma-aminobutyrate met 100.0 3.4E-41 1.2E-45 338.0 28.0 260 125-397 118-412 (490)
39 2yyk_A 4-hydroxyphenylacetate- 100.0 6.8E-41 2.3E-45 335.4 25.7 263 133-411 123-422 (481)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 9.1E-36 3.1E-40 298.0 24.0 235 133-380 132-392 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 100.0 8.6E-30 2.9E-34 255.2 25.1 236 134-379 134-392 (517)
42 3owa_A Acyl-COA dehydrogenase; 95.6 0.068 2.3E-06 54.5 11.5 123 287-413 466-591 (597)
43 2uxw_A VERY-long-chain specifi 84.4 9.9 0.00034 38.5 12.7 70 305-374 506-576 (607)
44 2z1q_A Acyl-COA dehydrogenase; 78.6 35 0.0012 34.1 14.4 100 305-414 468-570 (577)
No 1
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=2e-74 Score=570.11 Aligned_cols=396 Identities=33% Similarity=0.558 Sum_probs=355.7
Q ss_pred cccchhhhhhhccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCC
Q 014993 4 LLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGIT 83 (415)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~ 83 (415)
+++..+|++..+..++. +.| .+++++.++++.+++|+++++.|...+.|+++.+|+ ++|++|++.||+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~--~~~-----~~~~e~~~l~~~~r~~~~~~~~p~~~~~d~~~~~~~--~~~~~l~e~Gl~~l~ 78 (404)
T 2jif_A 8 SSGVDLGTENLYFQSMA--PLQ-----TFTDEEMMIKSSVKKFAQEQIAPLVSTMDENSKMEK--SVIQGLFQQGLMGIE 78 (404)
T ss_dssp ----------------C--CTT-----CCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHTCCCH--HHHHHHHHTTTTSSS
T ss_pred cchhhhhhhHHhccccc--ccC-----CCCHHHHHHHHHHHHHHHHhCcccHHHHhhcCCCCH--HHHHHHHHCCCCccC
Confidence 56677888888875332 222 245666699999999999999998888888899999 999999999999999
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC
Q 014993 84 APQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV 163 (415)
Q Consensus 84 ~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~ 163 (415)
+|++|||.|+++.+.+.++|++++.|+++++.+..|..++..+|..+|+++||++|+|++.+|. ++++++|||++|||.
T Consensus 79 ~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~-~~~~a~tEp~~Gsd~ 157 (404)
T 2jif_A 79 VDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTTEK-VGSFCLSEAGAGSDS 157 (404)
T ss_dssp SCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHHTC-CEEEECCBTTBSSSG
T ss_pred CchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCC-cceEEecCCCCCCCh
Confidence 9999999999999999999999999999998887776566778889999999999999999985 789999999999999
Q ss_pred CCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEE
Q 014993 164 VGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 243 (415)
Q Consensus 164 ~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f 243 (415)
..++|+|++++|||+|||+|.|+||+..||+++|+|+++++++..++++|+||++.|||++.+.|+++|++++++++|+|
T Consensus 158 ~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f 237 (404)
T 2jif_A 158 FALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTF 237 (404)
T ss_dssp GGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEESCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEE
T ss_pred hhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEEeCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999998654445689999999999999999999999999999999999
Q ss_pred eeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHH
Q 014993 244 ENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 323 (415)
Q Consensus 244 ~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~ 323 (415)
|||+||+++++|.++. |+......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.
T Consensus 238 d~v~Vp~~~~lg~~g~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~ 312 (404)
T 2jif_A 238 ENVKVPEANILGQIGH-----GYKYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVA 312 (404)
T ss_dssp EEEEEEGGGEESSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHH
T ss_pred ccEEECHHHcCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHH
Confidence 9999999999998888 99888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHH
Q 014993 324 TALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIR 403 (415)
Q Consensus 324 ~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~ 403 (415)
++++++|++++++++.++.+.+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++
T Consensus 313 ~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~ 392 (404)
T 2jif_A 313 TQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQ 392 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHGGGGTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcCcceecCCCcHHHHHhhccceeecCCHHHHH
Confidence 99999999999999999988776778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 014993 404 RMIIGRALLKQ 414 (415)
Q Consensus 404 ~~~i~~~l~~~ 414 (415)
++.|++.+++.
T Consensus 393 ~~~ia~~~~~~ 403 (404)
T 2jif_A 393 LNTIAKHIDAE 403 (404)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999998763
No 2
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=2.5e-74 Score=569.60 Aligned_cols=378 Identities=29% Similarity=0.458 Sum_probs=358.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHH
Q 014993 26 SSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEI 105 (415)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~l 105 (415)
.+++..++++++++++.+++|+++++.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+++.++|+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel 100 (403)
T 3r7k_A 23 VAPEAWTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPR--DLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAI 100 (403)
T ss_dssp --CGGGGCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCT--HHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHH
Confidence 44455567777799999999999999999888999999999 9999999999999999999999999999999999999
Q ss_pred Hhc-cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEee
Q 014993 106 SRA-SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKM 184 (415)
Q Consensus 106 a~~-~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~ 184 (415)
+++ |+++++.+..+..++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.
T Consensus 101 a~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~ 180 (403)
T 3r7k_A 101 LAAGGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKT 180 (403)
T ss_dssp HHTTCCHHHHHHHCTHHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEE
T ss_pred HhcCCchHHHHHHHHhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEE
Confidence 998 8988877765544777889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcc
Q 014993 185 WCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSF 264 (415)
Q Consensus 185 ~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~ 264 (415)
|+||+..||+++|+++++++ ++.++++|+||++.|||++.++|+++|++++++++|+||||+||+++++|.++.
T Consensus 181 ~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~----- 254 (403)
T 3r7k_A 181 FITSGVRADFVTTAVRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENS----- 254 (403)
T ss_dssp EEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----
T ss_pred cccCCccCCEEEEEEEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCc-----
Confidence 99999999999999998765 556899999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 014993 265 GVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK 344 (415)
Q Consensus 265 g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~ 344 (415)
|+......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+.
T Consensus 255 g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~ 334 (403)
T 3r7k_A 255 GFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGE 334 (403)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 014993 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 345 ~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l 411 (415)
+....++++|+++++.+.++++.++|+|||+||+++++++|+|||++.+.+++|+++++++.|++.+
T Consensus 335 ~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 401 (403)
T 3r7k_A 335 DVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRI 401 (403)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEecCCchHHHHHHHhCcceeecCHHHHHHHHHHHHh
Confidence 7788899999999999999999999999999999999999999999999999999999999999986
No 3
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.5e-74 Score=564.42 Aligned_cols=374 Identities=37% Similarity=0.578 Sum_probs=355.7
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++.++++.+++|+++++.|...+.|+.+.+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|+++++|++
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~~ 82 (379)
T 1ukw_A 5 LTEEQRQLQALARRFAKEVILPVAQEYDEKEEVPW--PVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMG 82 (379)
T ss_dssp CCHHHHHHHHHHHHHHHHTTGGGHHHHHHHTCCCH--HHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCch
Confidence 45666699999999999999998888898899999 9999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 191 (415)
+++.+..|. ++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+..
T Consensus 83 ~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~ 161 (379)
T 1ukw_A 83 IYTIPMASD-LGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGE 161 (379)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred HHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCCCc
Confidence 998887774 7778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHh
Q 014993 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMS 271 (415)
Q Consensus 192 ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~ 271 (415)
||+++|++++++++++.++++|+||++.|||++.++|+++|++++++++|+||||+||+++++|.++. |+.....
T Consensus 162 Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~-----g~~~~~~ 236 (379)
T 1ukw_A 162 AEWVVVFATVNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGE-----GFKIAMQ 236 (379)
T ss_dssp EEEEEEEEESCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTC-----HHHHHHH
T ss_pred CCEEEEEEEcCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCc-----hHHHHHH
Confidence 99999999986544456899999999999999999999999999999999999999999999998888 9988888
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 014993 272 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 351 (415)
Q Consensus 272 ~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~ 351 (415)
.++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+....++
T Consensus 237 ~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~ 316 (379)
T 1ukw_A 237 TLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASA 316 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998777777899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 352 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 352 ~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 317 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 378 (379)
T 1ukw_A 317 IAKAYASEIAFEAANQAIQIHGGYGYVREFPVEKLLRDVKLNQIYEGTNEIQRLIIARHILA 378 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCeecCCCChHHHHHHHhcCceecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 4
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=7.5e-75 Score=571.73 Aligned_cols=376 Identities=35% Similarity=0.592 Sum_probs=353.0
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.|+++.+|+ ++|++|++.||+++.+|++|||.|+++.+++.++|+|+++|
T Consensus 17 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~ 94 (393)
T 3pfd_A 17 FQLPEEHIALREAIRALAEKEIAPYAAEVDEKARFPE--EALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVD 94 (393)
T ss_dssp -----CHHHHHHHHHHHHHHHTGGGHHHHHHTTCCCH--HHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchHHHHHhhhCCCCH--HHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhC
Confidence 3446667799999999999999999888999999999 99999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++++..|. ++...+..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 95 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 173 (393)
T 3pfd_A 95 CSASLIPAVNK-LGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNG 173 (393)
T ss_dssp HHHHHHHHHHH-HTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCC
Confidence 99998777765 66677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|+++++++++..++++|+||++.|||++.++|+++|++++++++|+||||+||++++||.++. |+...
T Consensus 174 ~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~-----g~~~~ 248 (393)
T 3pfd_A 174 GKSTWYTVMAVTDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGT-----GFKTA 248 (393)
T ss_dssp TTCSEEEEEEESCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----HHHHH
T ss_pred cccCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCc-----hHHHH
Confidence 9999999999997655567899999999999999999999999999999999999999999999999888 99999
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cch
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPK 348 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~ 348 (415)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.++.+.+ ...
T Consensus 249 ~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 328 (393)
T 3pfd_A 249 LATLDHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGF 328 (393)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998765 667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 349 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 349 ~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
.++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 329 ~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~ll~ 393 (393)
T 3pfd_A 329 ISAASKCFASDVAMEVTTDAVQLFGGYGYTQDFPVERMMRDAKITQIYEGTNQIQRVVMSRALLR 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhhccCCChHHHHHHhhcceeeecCHHHHHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999999999999999999999999875
No 5
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=6.6e-74 Score=564.02 Aligned_cols=378 Identities=38% Similarity=0.614 Sum_probs=357.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.|+++.+|+ ++|++|++.||+++.+|++|||.|+++.+++.++|+++++|
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 82 (387)
T 2d29_A 5 FEEGAEERQVLGPFREFLKAEVAPGAAERDRTGAFPW--DLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYD 82 (387)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHHCCCCH--HHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhC
Confidence 3346677799999999999999998888898899999 99999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 162 (387)
T 2d29_A 83 GALALTVASHNSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQG 162 (387)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCC
Confidence 99998777774366778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCC----CCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcch
Q 014993 190 PVAQTLVVYAKTDIKA----GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~----~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g 265 (415)
..||+++|+++++++. ++.++++|+||++.|||++.++|+++|++++++++|+||||+||+++++|.++. |
T Consensus 163 ~~Ad~~~v~a~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~-----g 237 (387)
T 2d29_A 163 SVAGVYVVMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGK-----G 237 (387)
T ss_dssp TTCSEEEEEEECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTB-----H
T ss_pred CcCCEEEEEEEeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCc-----c
Confidence 9999999999987442 455899999999999999999999999999999999999999999999998887 9
Q ss_pred HHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 014993 266 VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV 345 (415)
Q Consensus 266 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~ 345 (415)
+......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+
T Consensus 238 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~ 317 (387)
T 2d29_A 238 FYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRP 317 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 98888889999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 346 DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 346 ~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
....++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++.
T Consensus 318 ~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~i~~~~ia~~~l~~ 386 (387)
T 2d29_A 318 FTLEAAQAKLFASEAAVKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIARRLLEA 386 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhCccccCCHHHHHHHHHHHHHhhc
Confidence 677899999999999999999999999999999999999999999999999999999999999999874
No 6
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=7.8e-74 Score=566.10 Aligned_cols=381 Identities=30% Similarity=0.470 Sum_probs=358.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHH
Q 014993 23 AAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAM 102 (415)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~ 102 (415)
+.-.+++..+++++.++++.+++|+++++.|...+.|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+++.++
T Consensus 17 ~~~~~M~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ 94 (403)
T 3p4t_A 17 QGPGSMSIWTTAEREALRKTVRAFAEREVLPHAHEWERAGEIPR--ELHRKAAELGLLGAGFPEDAGGSGGDGADPVVIC 94 (403)
T ss_dssp ------CTTSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHH
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHH
Confidence 34445566667788899999999999999999888999999999 9999999999999999999999999999999999
Q ss_pred HHHHhccccc-hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEe
Q 014993 103 EEISRASGSV-GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIING 181 (415)
Q Consensus 103 e~la~~~~~~-~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG 181 (415)
|+|+++|+++ ++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||
T Consensus 95 eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG 174 (403)
T 3p4t_A 95 EEMHYAGSPGGVYASLFTCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVING 174 (403)
T ss_dssp HHHHHTTCCHHHHHHHSTHHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEE
T ss_pred HHHHHhCCchhhhHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEE
Confidence 9999999998 777777765677788999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCC
Q 014993 182 NKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGC 261 (415)
Q Consensus 182 ~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~ 261 (415)
+|.|+||+..||+++|+++++++ +..++++|+||++.|||++.++|+++|++++++++|+||||+||++++||.++.
T Consensus 175 ~K~~vs~a~~Ad~~~v~a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~-- 251 (403)
T 3p4t_A 175 AKTYITSGVRADYVVTAARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENT-- 251 (403)
T ss_dssp EEEEEETTTTCSEEEEEEECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC--
T ss_pred EEEEecCCcccCEEEEEEEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCc--
Confidence 99999999999999999998764 556899999999999999999999999999999999999999999999999888
Q ss_pred CcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014993 262 NSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 341 (415)
Q Consensus 262 ~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d 341 (415)
|+......+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|
T Consensus 252 ---g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d 328 (403)
T 3p4t_A 252 ---GFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQL 328 (403)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 014993 342 NGKVD-PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 342 ~~~~~-~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l 411 (415)
.+.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+
T Consensus 329 ~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l 399 (403)
T 3p4t_A 329 AGETNLIAEVCFAKNTAVEAGEWVANQAVQLFGGMGYMAESEVERQYRDMRILGIGGGTTEILTSLAAKTL 399 (403)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHTTTTTTTSCHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhChhhccCCCcHHHHHHHhhcceeccCHHHHHHHHHHHHc
Confidence 98766 77899999999999999999999999999999999999999999999999999999999999987
No 7
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=1.5e-73 Score=561.49 Aligned_cols=374 Identities=33% Similarity=0.582 Sum_probs=349.8
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
...+++++++++.+++|+++++.|...+.|+.+.+|+ ++|++|++.||+++.+|++|||.|+++.+++.++|+|+++|
T Consensus 14 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (387)
T 3nf4_A 14 LLPSQEAAELIELTREIADKVLDPIVDRHEKDETYPE--GVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARW 91 (387)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCT--THHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCccHHHHhhhCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhC
Confidence 4456777799999999999999999888999999999 99999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++.+..|. ++...+..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 92 ~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 170 (387)
T 3nf4_A 92 ASVAVAVSVHS-LSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHG 170 (387)
T ss_dssp HHHHHHHHHHH-HHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred chHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCC
Confidence 99999888876 77778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|+++++ ++..++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.++. |+...
T Consensus 171 ~~Ad~~~v~a~~~--~~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~-----g~~~~ 243 (387)
T 3nf4_A 171 GKADFYTLFARTG--EGSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQ-----GLQIA 243 (387)
T ss_dssp TTCSEEEEEEECC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTC-----HHHHH
T ss_pred cccCEEEEEEEeC--CCCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCc-----hHHHH
Confidence 9999999999986 3456899999999999999999999999999999999999999999999999888 99999
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+....
T Consensus 244 ~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~ 323 (387)
T 3nf4_A 244 FSALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQ 323 (387)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 324 ~~~aK~~a~~~a~~~~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~l~~ 387 (387)
T 3nf4_A 324 ASIAKLTATDAAMKVTTDAVQVFGGVGYTRDYRVERYMREAKIMQIFEGTNQIQRLVIARGLTR 387 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcHhhcCCCcHHHHHhHhhcCeeecChHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999998864
No 8
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.2e-73 Score=561.62 Aligned_cols=375 Identities=39% Similarity=0.626 Sum_probs=356.2
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCC---CCHHHHHHHHHHHHhc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG---LGYLYHCIAMEEISRA 108 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g---~~~~~~~~v~e~la~~ 108 (415)
+++++.++++.+++|+++++.|...+.|+++.+|+ ++|++|++.||+++.+|++|||.| +++.+++.++|+++++
T Consensus 5 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~~ 82 (383)
T 1buc_A 5 LTDIQQDFLKLAHDFGEKKLAPTVTERDHKGIYDK--ELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKY 82 (383)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTTHHHHHHHTCCCH--HHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHhh
Confidence 45666699999999999999998888899999999 999999999999999999999999 9999999999999999
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe-CCEEEEEeEeeccc
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCT 187 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~-~~g~~LnG~k~~vs 187 (415)
|+++++++..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|+++ +|||+|||+|.|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s 162 (383)
T 1buc_A 83 DAGVAITLSATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFIT 162 (383)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE
T ss_pred ChHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccC
Confidence 99999888777546778889999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHH
Q 014993 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267 (415)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~ 267 (415)
|+..||+++|++++++++++.++++|+||++.|||++.++|+++|++++++++|+||||+||+++++|.++. |+.
T Consensus 163 ~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~-----g~~ 237 (383)
T 1buc_A 163 NGGAADIYIVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGK-----GFK 237 (383)
T ss_dssp TTTTCSEEEEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTB-----HHH
T ss_pred CCCcCCEEEEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCc-----hHH
Confidence 999999999999987554566899999999999999998999999999999999999999999999998887 898
Q ss_pred HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 014993 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP 347 (415)
Q Consensus 268 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~ 347 (415)
.....++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+..
T Consensus 238 ~~~~~l~~~r~~~aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~ 317 (383)
T 1buc_A 238 IAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFT 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 348 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 348 ~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
..++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 318 ~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 383 (383)
T 1buc_A 318 VDAAIAKRVASDVAMRVTTEAVQIFGGYGYSEEYPVARHMRDAKITQIYEGTNEVQLMVTGGALLR 383 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeecCCCChHHHHHHHhhcccccCCHHHHHHHHHHHHHhC
Confidence 789999999999999999999999999999999999999999999999999999999999999874
No 9
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.3e-73 Score=563.36 Aligned_cols=377 Identities=36% Similarity=0.561 Sum_probs=355.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.|+.+.+|+ ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|
T Consensus 14 ~~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~ 91 (396)
T 1egd_A 14 FEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPV--PLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGC 91 (396)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHCCCCH--HHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhC
Confidence 3346666699999999999999998888888899998 99999999999999999999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++.+ .|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 92 ~~~~~~~-~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~ 170 (396)
T 1egd_A 92 TGVQTAI-EGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNG 170 (396)
T ss_dssp HHHHHHH-HHHHHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETT
T ss_pred ccHHHHH-HhhhHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCC
Confidence 9999876 565456667889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCC---CCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchH
Q 014993 190 PVAQTLVVYAKTDIKAGS---KGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGV 266 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~---~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~ 266 (415)
..||+++|+++++++++. .++++|+||++.|||++.++|+++|++++++++|+||||+||++++||.++. |+
T Consensus 171 ~~Ad~~~v~a~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~-----g~ 245 (396)
T 1egd_A 171 GKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGA-----GF 245 (396)
T ss_dssp TTCSEEEEEEECCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTB-----HH
T ss_pred cccCEEEEEEEeCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCc-----cH
Confidence 999999999998754333 6899999999999999999999999999999999999999999999998887 99
Q ss_pred HHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 014993 267 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD 346 (415)
Q Consensus 267 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~ 346 (415)
......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+.
T Consensus 246 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~ 325 (396)
T 1egd_A 246 KVAMGAFDKERPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRN 325 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
...++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++.
T Consensus 326 ~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (396)
T 1egd_A 326 TYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAKIYQIYGGTSQIQRLIVAREHIDK 393 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTBTTSSHHHHHHHHGGGGTTTSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCChHHHHHHHhhCeeecCCHHHHHHHHHHHHHHhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999864
No 10
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=2e-73 Score=561.25 Aligned_cols=375 Identities=39% Similarity=0.623 Sum_probs=355.7
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++.++++.+++|+++++.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|++
T Consensus 6 ~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~ 83 (391)
T 2vig_A 6 LPETHQMLLQTCRDFAEKELFPIAAQVDKEHLFPA--AQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCAS 83 (391)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCH--HHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcccHHHHHhcCCCCH--HHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhccH
Confidence 45666699999999999999998888899999999 9999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 191 (415)
+++.+..|..++...|..+|+++|+++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+..
T Consensus 84 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~ 163 (391)
T 2vig_A 84 TGVIMSVNNSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWE 163 (391)
T ss_dssp HHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCCc
Confidence 99888777436677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHh
Q 014993 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMS 271 (415)
Q Consensus 192 ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~ 271 (415)
||+++|++++++++++.++++|+||++.|||++.++|+++|++++++++|+||||+||+++++|.++. |+.....
T Consensus 164 Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~-----g~~~~~~ 238 (391)
T 2vig_A 164 ASAAVVFASTDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGM-----GFKIAMQ 238 (391)
T ss_dssp CSEEEEEEECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTB-----HHHHHHH
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCc-----hHHHHHH
Confidence 99999999987544556899999999999999999999999999999999999999999999999888 8988888
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhh
Q 014993 272 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCA 351 (415)
Q Consensus 272 ~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~ 351 (415)
.++.+|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+.+....++
T Consensus 239 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~ 318 (391)
T 2vig_A 239 TLDMGRIGIASQALGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAA 318 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998876677899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 352 GVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 352 ~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++
T Consensus 319 ~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~G~~~~~~~~ia~~~l~ 380 (391)
T 2vig_A 319 MAKLAASEAATAISHQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLR 380 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCeEecCCChHHHHHHHhhcceeecCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999876
No 11
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=4e-73 Score=555.56 Aligned_cols=369 Identities=39% Similarity=0.638 Sum_probs=352.0
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
++++.++++.+++|+++++.|...+.|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|++++.|+++
T Consensus 4 ~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~ 81 (372)
T 2dvl_A 4 TQEQRLVLDAVRRVAREVLYPLAPEYDRKAEYPW--PQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSV 81 (372)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHHHHhCchhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHH
Confidence 4566699999999999889888888888899999 99999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCC
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVA 192 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~a 192 (415)
++.+..|..++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+..|
T Consensus 82 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~A 161 (372)
T 2dvl_A 82 AVIVSVTSGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHA 161 (372)
T ss_dssp HHHHHHHTSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTC
T ss_pred HHHHHHhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcC
Confidence 88888774367778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhh
Q 014993 193 QTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSG 272 (415)
Q Consensus 193 d~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~ 272 (415)
|+++|++++++ ++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.++. |+......
T Consensus 162 d~~~v~a~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~-----g~~~~~~~ 231 (372)
T 2dvl_A 162 HLYVVMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGR-----GLAYALAG 231 (372)
T ss_dssp SEEEEEEEETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----HHHHHHHH
T ss_pred CEEEEEEEeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCc-----hHHHHHHH
Confidence 99999999853 689999999999999999999999999999999999999999999998888 89888889
Q ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhH
Q 014993 273 LDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAG 352 (415)
Q Consensus 273 ~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ 352 (415)
++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+....+++
T Consensus 232 l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~ 311 (372)
T 2dvl_A 232 LDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASA 311 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777778999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 353 VILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 353 ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.|++.+++
T Consensus 312 aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~ 372 (372)
T 2dvl_A 312 AKLFASAAAVEVTREAVQVLGGYGYHRDYRVERYYRDAKVTEIYEGTSEIQRLVIARELYR 372 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHGGGTTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCeecCCCCcHHHHHHHhhcceecCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 12
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=8.2e-73 Score=555.84 Aligned_cols=371 Identities=33% Similarity=0.568 Sum_probs=350.9
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc-c
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS-G 110 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~-~ 110 (415)
+++++.++++.+++|+++++.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++| +
T Consensus 10 ~~~~~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~ 87 (385)
T 2pg0_A 10 LREEHHMFRAAFRKFLEKEAYPHYNDWEKRGIIPR--SFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSS 87 (385)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTSCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCCCH--HHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCc
Confidence 45666699999999999999998888899999999 99999999999999999999999999999999999999999 8
Q ss_pred cchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCC
Q 014993 111 SVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGP 190 (415)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~ 190 (415)
++++.+ |..++...|..+|+++|+++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+.
T Consensus 88 ~~~~~~--~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 165 (385)
T 2pg0_A 88 LVGIGL--HNDIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGI 165 (385)
T ss_dssp GHHHHH--HHHTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred hHHHHH--HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCc
Confidence 888765 544667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEEeCCC--CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHH
Q 014993 191 VAQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268 (415)
Q Consensus 191 ~ad~~~v~a~~~~~--~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~ 268 (415)
.||+++|+++++++ +++.++++|+||++.|||++.++|+++|++++++++|+||||+||++++||.++. |+..
T Consensus 166 ~Ad~~~v~a~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~-----g~~~ 240 (385)
T 2pg0_A 166 HADLIVVACKTDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGK-----GFYY 240 (385)
T ss_dssp TCSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTC-----HHHH
T ss_pred ccCEEEEEEEeCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCc-----hHHH
Confidence 99999999998644 3445799999999999999998999999999999999999999999999998888 9988
Q ss_pred HHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch
Q 014993 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK 348 (415)
Q Consensus 269 ~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~ 348 (415)
....++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+...
T Consensus 241 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~ 320 (385)
T 2pg0_A 241 LMEKLQQERLVVAIAAQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVT 320 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHH
Q 014993 349 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 349 ~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l 411 (415)
.++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.|
T Consensus 321 ~~~~aK~~a~e~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~l 383 (385)
T 2pg0_A 321 EVSMAKWWITEMAKRVAAEAMQLHGGYGYMEEYEIARRYRDIPVSAIYAGTNEMMKTIIARQL 383 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSHHHHHHHHGGGGGTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999975
No 13
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.8e-73 Score=557.15 Aligned_cols=374 Identities=29% Similarity=0.510 Sum_probs=353.4
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++.++++.+++|+++++.|...++|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|++
T Consensus 19 ~~~e~~~~~~~~r~~~~~~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~ 96 (393)
T 1rx0_A 19 LNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPV--DVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTS 96 (393)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCH--HHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCccHHHHhhcCCCCH--HHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCcc
Confidence 46677799999999999999998888898899999 9999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 191 (415)
+++.+..|. ++...|..+|+++||++|+|++++|+.++++++|||++|||...+.|+|++++|||+|||+|.|+||+..
T Consensus 97 ~~~~~~~~~-~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~ 175 (393)
T 1rx0_A 97 TTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGE 175 (393)
T ss_dssp HHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTT
T ss_pred hhHHHHHhH-HHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCcc
Confidence 988887775 6777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHh
Q 014993 192 AQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMS 271 (415)
Q Consensus 192 ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~ 271 (415)
||+++|++++++ +++.++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.++. |+.....
T Consensus 176 Ad~~~v~a~~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~-----g~~~~~~ 249 (393)
T 1rx0_A 176 SDIYVVMCRTGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQ-----GFLIAVR 249 (393)
T ss_dssp CSEEEEEEESSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----HHHHHHH
T ss_pred CCEEEEEEEcCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCc-----hHHHHHH
Confidence 999999999864 3456899999999999999999999999999999999999999999999998888 8988888
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cchhh
Q 014993 272 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKV-DPKDC 350 (415)
Q Consensus 272 ~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~-~~~~~ 350 (415)
.++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+ ....+
T Consensus 250 ~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~ 329 (393)
T 1rx0_A 250 GLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALC 329 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999998753 45678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 351 AGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 351 ~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
+++|+++++.+.++++.++|+|||.||+++++++|||||++...+++|+++++++.|++.+++.
T Consensus 330 ~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~~l~~ 393 (393)
T 1rx0_A 330 SMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRILISRSLLQE 393 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGGGBTTSTHHHHHHHHHHTTTSSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeeecCCChHHHHHHhccCceecCChHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999863
No 14
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=6.3e-74 Score=565.68 Aligned_cols=379 Identities=34% Similarity=0.547 Sum_probs=351.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 014993 27 STSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (415)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la 106 (415)
.++...++++.++++.+++|+++++.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+++.++|+|+
T Consensus 14 ~m~~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~ 91 (396)
T 3ii9_A 14 LLDQQLADDERMVRDAAHAYAQGKLAPRVTEAFRHETTDA--AIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVE 91 (396)
T ss_dssp CGGGGSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHH
Confidence 3445566777799999999999999998888899999999 99999999999999999999999999999999999999
Q ss_pred hccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecc
Q 014993 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (415)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~v 186 (415)
++|+++++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~v 171 (396)
T 3ii9_A 92 RVDSGYRSMMSVQSSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWI 171 (396)
T ss_dssp TTCHHHHHHHHCCCCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEE
T ss_pred HhChhHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeE
Confidence 99999998888776466677889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchH
Q 014993 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGV 266 (415)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~ 266 (415)
||+..||+++|++++++ ++.+++++|+||++.|||++.+.|+++|++++++++|+||||+||++++++. +. |+
T Consensus 172 s~a~~Ad~~~v~a~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~-----g~ 244 (396)
T 3ii9_A 172 TNSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VK-----GL 244 (396)
T ss_dssp ETGGGCSEEEEEEEEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CC-----ST
T ss_pred CCCccCCEEEEEEEecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-Ch-----HH
Confidence 99999999999999862 2345799999999999999999999999999999999999999999999976 55 88
Q ss_pred HHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 014993 267 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD 346 (415)
Q Consensus 267 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~ 346 (415)
......+...|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+.
T Consensus 245 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~ 324 (396)
T 3ii9_A 245 RGPFTCLNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAA 324 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
...++++|+++++.+.++++.++|+|||+||+++++++|+|||++...+++|+++++++.|++.+++.
T Consensus 325 ~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~~~~~~ia~~llgl 392 (396)
T 3ii9_A 325 VEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDIHALILGRAQTGI 392 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSCSCSGGGHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHhhhcCceeecCHHHHHHHHHHHHHhCc
Confidence 78899999999999999999999999999999999999999999999999999999999999999874
No 15
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=7.8e-73 Score=557.52 Aligned_cols=378 Identities=65% Similarity=1.113 Sum_probs=356.9
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++.++++.+++|+++++.|...+.|+++.+|...++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|++
T Consensus 13 ~~~e~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~ 92 (394)
T 1ivh_A 13 LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGA 92 (394)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchh
Confidence 45666699999999999999998888888888887557899999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPV 191 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ 191 (415)
+++.+..|..++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||+..
T Consensus 93 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~ 172 (394)
T 1ivh_A 93 VGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPD 172 (394)
T ss_dssp HHHHHHHHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGG
T ss_pred HHHHHHHhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCc
Confidence 99988877546778888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeCCC--CCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 192 AQTLVVYAKTDIK--AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 192 ad~~~v~a~~~~~--~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
||+++|+++++++ ++..++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.++. |+...
T Consensus 173 Ad~~~v~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~-----g~~~~ 247 (394)
T 1ivh_A 173 ADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENK-----GVYVL 247 (394)
T ss_dssp CSEEEEEEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTC-----HHHHH
T ss_pred CCEEEEEEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCc-----hHHHH
Confidence 9999999998654 3345789999999999999999999999999999999999999999999999888 99888
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+....
T Consensus 248 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~ 327 (394)
T 1ivh_A 248 MSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKD 327 (394)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999988777778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++.
T Consensus 328 ~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~i~~Gt~~i~~~~ia~~ll~~ 392 (394)
T 1ivh_A 328 CAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVIGRAFNAD 392 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSTHHHHHHHHHHTTTTTSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCchHHHHHHhcccccccCChHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 16
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.3e-73 Score=560.15 Aligned_cols=373 Identities=29% Similarity=0.497 Sum_probs=355.8
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCC-CcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHH
Q 014993 28 TSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEIS 106 (415)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la 106 (415)
++..+++++.++++.+++|+++++.|...+.|+++.+| . ++|++|++.||+++.+ ++|||.|+++.+++.++|+|+
T Consensus 26 m~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela 102 (403)
T 3sf6_A 26 INAVLSAEEREIRDTVRSVVQRRIKPHIASWYEDGELPAR--ELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELE 102 (403)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCHH--HHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcChhHHHHHhcCCCCHH--HHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHH
Confidence 44556777779999999999999999988899999999 9 9999999999999999 999999999999999999999
Q ss_pred hccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecc
Q 014993 107 RASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (415)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~v 186 (415)
++|+++++++..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~i 182 (403)
T 3sf6_A 103 AGDSGIRSLVSVQGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWI 182 (403)
T ss_dssp HHCHHHHHHHHHHHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEE
T ss_pred HhcccHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEee
Confidence 99999998888776566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchH
Q 014993 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGV 266 (415)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~ 266 (415)
||+..||+++|+|++++ ++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|. +. |+
T Consensus 183 s~a~~Ad~~~v~ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~-----g~ 251 (403)
T 3sf6_A 183 TNGSVADVAVVWARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-AT-----SL 251 (403)
T ss_dssp ETGGGCSEEEEEEEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CC-----ST
T ss_pred cCCcccCEEEEEEEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-Ch-----hH
Confidence 99999999999999862 689999999999999999999999999999999999999999999987 66 88
Q ss_pred HHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 014993 267 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD 346 (415)
Q Consensus 267 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~ 346 (415)
......++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+.
T Consensus 252 ~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~ 331 (403)
T 3sf6_A 252 GAPLRCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELA 331 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
...++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++.
T Consensus 332 ~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llgl 399 (403)
T 3sf6_A 332 PEQVSLGKLNNVREAIEIARTARTVLGASGITGEYPVMRHANNLESVLTYEGTSEMHTLIIGQALTGV 399 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCeEccccCcHHHHHhhcccceeecCHHHHHHHHHHHHHhCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999874
No 17
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=7.5e-73 Score=558.53 Aligned_cols=372 Identities=30% Similarity=0.478 Sum_probs=354.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
+..+++++.++++.+++|+++++.|...+.|+++.+|. ++|++|++.||+++.+ ++|||.|+++.+++.++|+++++
T Consensus 23 ~~~l~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~ 99 (399)
T 3swo_A 23 DRLLDQDERDIAATVRQFVDTRLKPNVEGWFESATLPS--ELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAG 99 (399)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCT--THHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCChhHHHHHhhCCCCH--HHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHh
Confidence 34456677799999999999999998888899999999 9999999999999999 99999999999999999999999
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccC
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~ 188 (415)
|+++++.+..|..++...|..+|+++||++|+|++++|+.++++++|||++|||...++|+|++++|||+|||+|.|+||
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~ 179 (399)
T 3swo_A 100 DSGFRSFVSVQGSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITN 179 (399)
T ss_dssp CHHHHHHHHHHTTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEET
T ss_pred CccHHHHHHHHhhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECC
Confidence 99998888777556778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHH
Q 014993 189 GPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYV 268 (415)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~ 268 (415)
+..||+++|+|+++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|. +. |+..
T Consensus 180 a~~Ad~~~v~a~~~-----~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~-----g~~~ 248 (399)
T 3swo_A 180 GNLADVATVWAQTD-----DGIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AE-----GLSA 248 (399)
T ss_dssp TTTCSEEEEEEBCT-----TSCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CC-----STHH
T ss_pred CCccCEEEEEEEeC-----CceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-Ch-----hHHH
Confidence 99999999999985 2689999999999999999999999999999999999999999999998 66 8888
Q ss_pred HHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCch
Q 014993 269 MMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPK 348 (415)
Q Consensus 269 ~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~ 348 (415)
....++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.++.+.+...
T Consensus 249 ~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~ 328 (399)
T 3swo_A 249 PLSCLNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPE 328 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999887788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 349 DCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 349 ~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
.++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.|++.+++.
T Consensus 329 ~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~~i~~~~ia~~llg~ 394 (399)
T 3swo_A 329 QISLGKLNNVREAIAIARECRTLLGGSGITLEYSPLRHANNLESVLTYEGTSEMHLLSIGKALTGK 394 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGGBSSSTHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCcHHHHHHHhhcceeecCHHHHHHHHHHHHHcCc
Confidence 899999999999999999999999999999999999999999999999999999999999999874
No 18
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=4.7e-72 Score=550.45 Aligned_cols=370 Identities=28% Similarity=0.460 Sum_probs=347.2
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcccc
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGS 111 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~ 111 (415)
+++++.++++.+++|+++++.|...+.|+.+.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|++
T Consensus 11 ~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~ 88 (385)
T 2eba_A 11 LTPEEKEVQKAARRFLEKEALPHIRDWWEEGVFPT--HLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSG 88 (385)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCG--GGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCccHHHHHHhCCCCH--HHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhCch
Confidence 45666699999999999999998888888899999 9999999999999999999999999999999999999999999
Q ss_pred chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCC-CCceeEEEEeCCEEEEEeEeecccCCC
Q 014993 112 VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDV-VGMKCKADRVDGGYIINGNKMWCTNGP 190 (415)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~-~~~~t~a~~~~~g~~LnG~k~~vs~~~ 190 (415)
+++.+..|..++...|..+|+++||++|+|++++|+.++++++|||++|||. ..++|+|++++|||+|||+|.|+||+.
T Consensus 89 ~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~~~ 168 (385)
T 2eba_A 89 LRSFVSVQSSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGN 168 (385)
T ss_dssp HHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCCCc
Confidence 9988887765667788899999999999999999999999999999999999 899999999999999999999999999
Q ss_pred CCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHH
Q 014993 191 VAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMM 270 (415)
Q Consensus 191 ~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~ 270 (415)
.||+++|++++++ + .+++|+||++.|||++.+.|+++|++++++++|+||||+||+++++ ..+. |+....
T Consensus 169 ~Ad~~~v~a~~~~--g--~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~-----g~~~~~ 238 (385)
T 2eba_A 169 LAHLAVIWAKDEG--G--EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKAL-----GLKAPL 238 (385)
T ss_dssp TCSEEEEEEECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCC-----STHHHH
T ss_pred ccCEEEEEEEeCC--C--cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCc-----hHHHHH
Confidence 9999999999852 2 2899999999999999999999999999999999999999999999 6666 788788
Q ss_pred hhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhh
Q 014993 271 SGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDC 350 (415)
Q Consensus 271 ~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~ 350 (415)
..++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+....+
T Consensus 239 ~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~ 318 (385)
T 2eba_A 239 SCLTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQV 318 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999887777788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHh
Q 014993 351 AGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 351 ~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
+++|.++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.+++.+++
T Consensus 319 ~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~~~~~~ia~~llg 381 (385)
T 2eba_A 319 SLAKRQNVWKALQAARMARDILGGSGITLEYHAIRHMLNLETVYTYEGTHDVHTLVLGREITG 381 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccCCcChHHHHHHhccCceeeCChHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999986
No 19
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=5.4e-72 Score=556.97 Aligned_cols=373 Identities=27% Similarity=0.453 Sum_probs=350.2
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.++.+.+|. ++|++|++.||+++.+| +|||.|+++.+.+.++|+++++|
T Consensus 53 ~~l~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~ 129 (436)
T 2ix5_A 53 DLLTPEEQAIRKKVRECMEKEVAPIMTEYWEKAEFPF--HITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVD 129 (436)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCG--GGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHhhCChhhHHHHhcCCCCH--HHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhC
Confidence 3456677799999999999999998777777888999 99999999999999999 99999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCC
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNG 189 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~ 189 (415)
+++++.+..|..++...|..+|+++||++|+|++++|+.++|+++|||++|||...++|+|++++|||+|||+|.|+||+
T Consensus 130 ~~~~~~~~~~~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a 209 (436)
T 2ix5_A 130 ASCSTFILVHSSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNS 209 (436)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETT
T ss_pred ccHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCC
Confidence 99987777775467778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH
Q 014993 190 PVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM 269 (415)
Q Consensus 190 ~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~ 269 (415)
..||+++|+|+++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.. . ++...
T Consensus 210 ~~Ad~~lv~Ar~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~-----g~~~~ 280 (436)
T 2ix5_A 210 TFADLLIIFARNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-N-----SFQDT 280 (436)
T ss_dssp TTCSEEEEEEEETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-S-----SHHHH
T ss_pred cccCEEEEEEEECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-c-----cHHHH
Confidence 999999999998632 36899999999999999999999999999999999999999999999865 4 67778
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchh
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKD 349 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~ 349 (415)
...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.+....
T Consensus 281 ~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g~~~~~~ 360 (436)
T 2ix5_A 281 SKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQ 360 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999988766678
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 350 CAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 350 ~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|++.+++.
T Consensus 361 as~aK~~a~e~a~~v~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~~Gt~ei~~~~iar~llgl 425 (436)
T 2ix5_A 361 ASLGKAWISSKARETASLGRELLGGNGILADFLVAKAFCDLEPIYTYEGTYDINTLVTGREVTGI 425 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGGGBGGGSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCChHHHHHHHhhcceeecCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999999999999999999999999999999999863
No 20
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=3.9e-72 Score=553.29 Aligned_cols=372 Identities=37% Similarity=0.640 Sum_probs=353.5
Q ss_pred CChHHHHHHHHHHHHHHhhccCcchhhhhccCCCC-CcHHHHHHHHhcCCCCCCCCcCCCCCCC--CHHHHHHHHHHHHh
Q 014993 31 LFDDTQLQFKESVGQFARENIAPRAANIDQSNSFP-QDVNLWKLMGNFNLHGITAPQEYGGLGL--GYLYHCIAMEEISR 107 (415)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p-~~~~~~~~l~~~Gl~~l~~P~~~GG~g~--~~~~~~~v~e~la~ 107 (415)
.++++++++++.+++|+++.+.|...+.|+.+.+| . ++|++|++.||+++.+|++|||.|+ ++.+.+.++|+|++
T Consensus 4 ~~~~~~~~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela~ 81 (397)
T 3mpi_A 4 NLSKELQMLQKEVRNFVNKKIVPFADQWDNENHFPYE--EAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIAR 81 (397)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTCCCTT--TTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCChhHHHHHhcCCCCHH--HHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHHh
Confidence 34667779999999999999999988999999999 9 9999999999999999999999999 99999999999999
Q ss_pred ccccchhHHhhhhhHHHH-HHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecc
Q 014993 108 ASGSVGLSYGAHSNLCIN-QLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWC 186 (415)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~-~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~v 186 (415)
+|+++++.+..|. ++.. .+..+|+++|+++|+|++++|+.++++++|||+.|||...+.|+|++++|||+|||+|.|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~ 160 (397)
T 3mpi_A 82 GSSALRVQLNMEV-LGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWI 160 (397)
T ss_dssp HCHHHHHHHHHHT-TTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEE
T ss_pred hCchHHHHHHHHH-HhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEee
Confidence 9999999888775 5555 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEE-ecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcch
Q 014993 187 TNGPVAQTLVVYAKTDIKAGSKGITAFII-EKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFG 265 (415)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~~lV-~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g 265 (415)
||+..||+++|+++++++++..++++|+| |++.|||++ ++|+++|++++++++|+||||+||+++++|.++. |
T Consensus 161 s~~~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~-----g 234 (397)
T 3mpi_A 161 SNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGD-----G 234 (397)
T ss_dssp ETTTTCSSEEEEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----H
T ss_pred CCCcccCEEEEEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCc-----h
Confidence 99999999999999876555668999999 999999999 9999999999999999999999999999999888 9
Q ss_pred HHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-C
Q 014993 266 VYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-K 344 (415)
Q Consensus 266 ~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~-~ 344 (415)
+......++..|+.+++.++|+++++++.+++|+++|++||+||+++|.+|++|++|.++++++|++++++++.++.+ .
T Consensus 235 ~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~ 314 (397)
T 3mpi_A 235 ARIVFGSLNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRL 314 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 998889999999999999999999999999999999999999999999999999999999999999999999999988 5
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHH-HHH
Q 014993 345 VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIG-RAL 411 (415)
Q Consensus 345 ~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~-~~l 411 (415)
+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.|+ +.|
T Consensus 315 ~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei~~~~ia~~~l 382 (397)
T 3mpi_A 315 NNGLDVAMAKYAAGEAVSKCANYAMRILGAYGYSTEYPVARFYRDAPTYYMVEGSANICKMIIALDQL 382 (397)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSTTSHHHHHHHHTTHHHHSSSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCCCHHHHHhhccceeeecCHHHHHHHHHHHHhc
Confidence 5667889999999999999999999999999999999999999999999999999999999999 766
No 21
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=4.3e-72 Score=546.97 Aligned_cols=361 Identities=27% Similarity=0.390 Sum_probs=333.3
Q ss_pred HHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhh
Q 014993 41 ESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHS 120 (415)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~ 120 (415)
+.+++|+++++.|...+.|+++.+|+ ++|++|++.||+++.+|++|||.|+++.+.+.++|+++++|+++++.+..|.
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~ 79 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPR--DLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQG 79 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCH--HHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCH--HHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 56789999999998888899999999 9999999999999999999999999999999999999999999998887775
Q ss_pred hHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEE
Q 014993 121 NLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAK 200 (415)
Q Consensus 121 ~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~ 200 (415)
.++...|. +|+++||++|+|++++|+ ++|+++|||++|||...++|+|++++|||+|||+|.|+||+..||+++|+++
T Consensus 80 ~~~~~~l~-~g~~~q~~~~l~~~~~G~-~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 157 (366)
T 1r2j_A 80 MAAWTVQR-LGDAGQRATFLKELTSGK-LAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGL 157 (366)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHTTCC--CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEB
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHhCCC-eeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEE
Confidence 46667778 999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHH-HhhchHHHHH
Q 014993 201 TDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVM-MSGLDLERLV 279 (415)
Q Consensus 201 ~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~-~~~~~~~r~~ 279 (415)
+++ + ++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.++. |+... ...++.+|+.
T Consensus 158 ~~~--~--g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~-----g~~~~~~~~l~~~r~~ 228 (366)
T 1r2j_A 158 QED--G--SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGA-----SLPMLVAASLAYGRKS 228 (366)
T ss_dssp CSS--S--CCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTS-----CTTTTTHHHHHHHHHH
T ss_pred eCC--C--ceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCc-----cHHHHHHHHhhHHHHH
Confidence 854 2 789999999999999999999999999999999999999999999998877 77767 7778899999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCchhhhHHHHHHH
Q 014993 280 LAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-KVDPKDCAGVILCAA 358 (415)
Q Consensus 280 ~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~-~~~~~~~~~ak~~~~ 358 (415)
+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++ .+....++++|++++
T Consensus 229 ~aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~~a~ 308 (366)
T 1r2j_A 229 VAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAA 308 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999887 666678999999999
Q ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 359 ERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 359 ~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
+.+.++++.++|+|||.||+++++++|+|||++.+.+++|+++++++.+++.+++.
T Consensus 309 ~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~ia~~~lgl 364 (366)
T 1r2j_A 309 ERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALAL 364 (366)
T ss_dssp HHHHHHHHHHHHHHGGGGC--CCHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhCCeeecCCCcHHHHHHhccCceecCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999874
No 22
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=1.2e-71 Score=552.89 Aligned_cols=378 Identities=21% Similarity=0.270 Sum_probs=343.8
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccC------------------CCCCcHHHHHHHHhcCCCCCCCCcCCCCC
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSN------------------SFPQDVNLWKLMGNFNLHGITAPQEYGGL 91 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------------------~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~ 91 (415)
..+++++.++++.+++|+++++.|...+.++.. .+|+ ++|++|++.||+++.+|++|||.
T Consensus 7 ~~~~~~~~~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~e~G~~~~~~P~~~GG~ 84 (415)
T 4hr3_A 7 FAPSARAAELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELD--SLKAKARAAGLWNLFLPDPELGG 84 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHH--HHHHHHHHTTCSSTTCCCTTTSC
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHH--HHHHHHHhCCCcCcCCCHHHCCC
Confidence 445667779999999999999888766555432 2455 89999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccchhHHhh-hhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCC-CCCCCCCceeE
Q 014993 92 GLGYLYHCIAMEEISRASGSVGLSYGA-HSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCK 169 (415)
Q Consensus 92 g~~~~~~~~v~e~la~~~~~~~~~~~~-~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~-~gsd~~~~~t~ 169 (415)
|+++.+++.++|+|++.|.+..+.... +...+...|..+|+++||++|+|++++|+.++|+++|||+ +|||...++|+
T Consensus 85 g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~ 164 (415)
T 4hr3_A 85 GLSNSEYAPLAEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAAT 164 (415)
T ss_dssp CCCHHHHHHHHHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCE
T ss_pred CCCHHHHHHHHHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeE
Confidence 999999999999999987554433222 2213346788999999999999999999999999999999 99999999999
Q ss_pred EEEeCCEEEEEeEeecccCCCC--CCEEEEEEEeCCC-CCCCCeEEEEEecCCCCeeeccccccccCCCCC--ceeEEEe
Q 014993 170 ADRVDGGYIINGNKMWCTNGPV--AQTLVVYAKTDIK-AGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD--TCELVFE 244 (415)
Q Consensus 170 a~~~~~g~~LnG~k~~vs~~~~--ad~~~v~a~~~~~-~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~--~~~v~f~ 244 (415)
|++++|||+|||+|.|+||+.+ ||+++|+|+++++ ++..++++|+||++.|||++.++|+++|+++++ +++|+||
T Consensus 165 A~~~g~g~~lnG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fd 244 (415)
T 4hr3_A 165 AVVEGDEVVINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFD 244 (415)
T ss_dssp EEEETTEEEEEEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEE
T ss_pred EEEECCEEEEeeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEc
Confidence 9999999999999999999966 9999999999754 345689999999999999999999999999987 9999999
Q ss_pred eeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHH
Q 014993 245 NCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYT 324 (415)
Q Consensus 245 ~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~ 324 (415)
||+||++++||.++. |+......+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.+
T Consensus 245 dv~Vp~~~~lg~~~~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~ 319 (415)
T 4hr3_A 245 NVRLPADAFIAGPGK-----GFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARI 319 (415)
T ss_dssp EEEEEGGGBSSCTTC-----HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHH
T ss_pred cEEECHHHcCCCCCc-----hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHH
Confidence 999999999999888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhC--CCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHH
Q 014993 325 ALQSSRSYVYSVARDCDN--GKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEI 402 (415)
Q Consensus 325 ~l~aar~~~~~aa~~~d~--~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~ 402 (415)
+++++|++++++++.+|. +.+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++|++++
T Consensus 320 ~~~aar~~~~~aa~~~d~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~~~~~~~r~~Rda~~~~i~~Gt~ei 399 (415)
T 4hr3_A 320 AINQTRLLVLHAAWLLDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLSNDFPLAAAWVNARALRLADGPDEV 399 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSSSSSHHHHHHHHHHTTTTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCchHHHHHHHhhhheeecCcHHH
Confidence 999999999999999987 445667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 014993 403 RRMIIGRALLKQ 414 (415)
Q Consensus 403 ~~~~i~~~l~~~ 414 (415)
+++.|++.+++.
T Consensus 400 ~~~~ia~~~l~~ 411 (415)
T 4hr3_A 400 HRGVVARIELAK 411 (415)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 23
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=3.4e-71 Score=568.61 Aligned_cols=372 Identities=32% Similarity=0.547 Sum_probs=342.4
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccC-CCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
...++++.++++.+++|+++++.|...++|+.+ .+|. ++|++|.+.||+++.+|++|||.|+++.+.+.++|+++++
T Consensus 31 ~~lt~eq~~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~--~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~ 108 (597)
T 3owa_A 31 EDFSSEHKMIAKTTEDFIVNEVLPELEYLEQHEFDRSV--RLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRA 108 (597)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHTGGGHHHHTTTCHHHHH--HHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHhCchhHHHHHhcCCcCCH--HHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHcc
Confidence 334555669999999999999999887777765 5777 9999999999999999999999999999999999999998
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEEeEeecc
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWC 186 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~LnG~k~~v 186 (415)
+++ +..+..|..++...+..+|+++||++|+|++++|+.++|+++|||++|||...++|+|+++ ||+|+|||+|.||
T Consensus 109 ~~~-~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~i 187 (597)
T 3owa_A 109 GGF-AITHGAHVGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWI 187 (597)
T ss_dssp THH-HHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEE
T ss_pred chH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEe
Confidence 643 3344555445556788899999999999999999999999999999999999999999985 5569999999999
Q ss_pred cCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchH
Q 014993 187 TNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGV 266 (415)
Q Consensus 187 s~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~ 266 (415)
||+..||+++|+|++++ .++++|+||++.|||++.+.|+++|++++++++|+|+||+||++++||..+. |+
T Consensus 188 s~a~~Ad~~lV~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~-----G~ 258 (597)
T 3owa_A 188 TNSAFADVFIVYAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGK-----GH 258 (597)
T ss_dssp ETTTTCSEEEEEEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTC-----HH
T ss_pred CCCccCCEEEEEEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccc-----hH
Confidence 99999999999999864 3799999999999999999999999999999999999999999999999988 99
Q ss_pred HHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--
Q 014993 267 YVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGK-- 344 (415)
Q Consensus 267 ~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~-- 344 (415)
......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.++++++|++++++++.+|++.
T Consensus 259 ~~~~~~l~~~R~~~aa~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~ 338 (597)
T 3owa_A 259 IIAFNILNIGRYKLGVGTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMST 338 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988642
Q ss_pred -----------------CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHH
Q 014993 345 -----------------VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMII 407 (415)
Q Consensus 345 -----------------~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i 407 (415)
+....++++|+++++.+.++++.++|+|||+||+++++++|+|||++..++++|++++++..|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~ler~~RDar~~~i~eGt~ei~r~~I 418 (597)
T 3owa_A 339 LSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFMAEYEIERMYRDSRINRIFEGTNEINRLIV 418 (597)
T ss_dssp CCHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHHHGGGGTSSSCHHHHHHHH
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccChHHHHHHHhhhhheeCcHHHHHHHHH
Confidence 224568899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 014993 408 GRALLK 413 (415)
Q Consensus 408 ~~~l~~ 413 (415)
++.+++
T Consensus 419 a~~ll~ 424 (597)
T 3owa_A 419 PGTFLR 424 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999886
No 24
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=5.3e-70 Score=537.11 Aligned_cols=372 Identities=29% Similarity=0.462 Sum_probs=347.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhcc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRAS 109 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~ 109 (415)
..+++++.++++.+++|+++++.|...+.++.+.+|+ ++|++|++.||+++.+ ++|||.|+++.++..++|+|++.|
T Consensus 12 ~~~~~e~~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~~ 88 (392)
T 1siq_A 12 EQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHR--EIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVD 88 (392)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCCT--HHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcchHHHHhhCCCCH--HHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHhC
Confidence 3345666699999999999999888878888889999 9999999999999999 999999999999999999999999
Q ss_pred ccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEEeEeeccc
Q 014993 110 GSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIINGNKMWCT 187 (415)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~LnG~k~~vs 187 (415)
+++++.+..|..++...+..+|+++|+++|+|++++|+.++++++|||++|||...++|+|+++ +|||+|||+|.|+|
T Consensus 89 ~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs 168 (392)
T 1siq_A 89 SGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWIT 168 (392)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEE
T ss_pred cHHHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeec
Confidence 9988876666545566788899999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHH
Q 014993 188 NGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVY 267 (415)
Q Consensus 188 ~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~ 267 (415)
|+..||+++|++++++ .++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++|.. . |+.
T Consensus 169 ~~~~Ad~~~v~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~-----g~~ 238 (392)
T 1siq_A 169 NSPMADLFVVWARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-S-----SLG 238 (392)
T ss_dssp TGGGCSEEEEEEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-C-----SSH
T ss_pred CCcccCEEEEEEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-c-----CHH
Confidence 9999999999999863 25889999999999999999999999999999999999999999999865 3 666
Q ss_pred HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Q 014993 268 VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP 347 (415)
Q Consensus 268 ~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~ 347 (415)
.....++..|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++++|++++++++.+|.+.+..
T Consensus 239 ~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~ 318 (392)
T 1siq_A 239 GPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAP 318 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 66777888999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 348 KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 348 ~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
..++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++.+++.+++.
T Consensus 319 ~~~~~aK~~~~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rd~~~~~~~~G~~~~~~~~i~~~llgl 385 (392)
T 1siq_A 319 EMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGI 385 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSGGGSHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcHHHHHhhCcCCeeecCcHHHHHHHHHHHHhCc
Confidence 7789999999999999999999999999999999999999999999999999999999999999863
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-69 Score=557.77 Aligned_cols=392 Identities=32% Similarity=0.510 Sum_probs=353.4
Q ss_pred chhhhhhhccccccCCCCCCCCCCCChHHHHHHHHHHHHHHhhccCcchhhhhcc-CCCCCcHHHHHHHHhcCCCCCCCC
Q 014993 7 ARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQS-NSFPQDVNLWKLMGNFNLHGITAP 85 (415)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~p~~~~~~~~l~~~Gl~~l~~P 85 (415)
...|....|+.+ +.. .+-+++.+++|+ .++++.+++|+++++.|...+.+.. ..+|+ ++|++|++.||+++.+|
T Consensus 6 ~~~~~~~~f~~~-~~~-~~~~~~~~~~e~-~~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~--~~~~~l~e~Gl~~l~vP 80 (577)
T 2z1q_A 6 KLWQKGGGWLLE-VPE-RVYTPEDFDESV-KEIARTTRTFVEREVLPLLERMEHGELELNV--PLMRKAGELGLLAIDVP 80 (577)
T ss_dssp CTTTSTTGGGTS-CCS-CCCCGGGCCHHH-HHHHHHHHHHHHTTTHHHHHHHHTTCGGGHH--HHHHHHHHTTTTSTTSC
T ss_pred ccccccCccccC-CHH-HcCCCCCCCHHH-HHHHHHHHHHHhccCchhHHhhhcccCCCCH--HHHHHHHHCCCCCcCCC
Confidence 345777788865 322 333344555555 5999999999999888875444432 36787 99999999999999999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCC
Q 014993 86 QEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVG 165 (415)
Q Consensus 86 ~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~ 165 (415)
++|||.|+++.+.+.++|++ +.|+++++.+..|..++..+|..+|+++||++|+|++++|+.++|+++|||++|||...
T Consensus 81 ee~GG~g~~~~~~~~v~eel-~~~~s~~~~~~~~~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~ 159 (577)
T 2z1q_A 81 EEYGGLDLPKVISTVVAEEL-SGSGGFSVTYGAHTSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALA 159 (577)
T ss_dssp GGGTCCCCCHHHHHHHHHHH-TTSCTHHHHHHHHHTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGG
T ss_pred hhhCCCCCCHHHHHHHHHHH-hhcccHHHHHhhhHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCccc
Confidence 99999999999999999999 77999988888776555667889999999999999999999999999999999999999
Q ss_pred ceeEEEE--eCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEE
Q 014993 166 MKCKADR--VDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVF 243 (415)
Q Consensus 166 ~~t~a~~--~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f 243 (415)
++|+|++ +||+|+|||+|.|+||++.||+++|+|++++ .++++|+||++.|||++.+.|+++|++++++++|+|
T Consensus 160 ~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~f 235 (577)
T 2z1q_A 160 AKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVIL 235 (577)
T ss_dssp CCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEE
T ss_pred CeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEEEEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEe
Confidence 9999998 4567999999999999999999999999853 479999999999999999999999999999999999
Q ss_pred eeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHH
Q 014993 244 ENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMY 323 (415)
Q Consensus 244 ~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~ 323 (415)
+||+||.+++||..+. |+......++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.+|++|++|.
T Consensus 236 ddv~VP~~~llg~~g~-----g~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~ 310 (577)
T 2z1q_A 236 EDVKVPVENVLGEIGK-----GHKIAFNVLNVGRYKLGAGAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMA 310 (577)
T ss_dssp EEEEEEGGGEESCTTC-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHH
T ss_pred cceeccHHHccCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHH
Confidence 9999999999999888 99988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCC--------------CCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHh
Q 014993 324 TALQSSRSYVYSVARDCDNG--------------KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRD 389 (415)
Q Consensus 324 ~~l~aar~~~~~aa~~~d~~--------------~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rd 389 (415)
++++++|++++++++.+|.+ .+....++++|+++++.+.++++.++|+|||+||+++++++|+|||
T Consensus 311 ~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~e~~l~r~~Rd 390 (577)
T 2z1q_A 311 SRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQIHGGYGYSQEYPIERAYRD 390 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccccchhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeecCCChHHHHHhh
Confidence 99999999999999988865 2334568899999999999999999999999999999999999999
Q ss_pred hccCcccCChHHHHHHHHHHHHHh
Q 014993 390 AKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 390 a~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
++...+++|++++++..|++.+++
T Consensus 391 a~~~~i~eGt~~i~~~~ia~~~l~ 414 (577)
T 2z1q_A 391 ARINRIFEGTNEINRLLIPGMLLR 414 (577)
T ss_dssp HGGGGTTTSCHHHHHHHTTGGGSC
T ss_pred CcceeeeCcHHHHHHHHHHHHHHH
Confidence 999999999999999999988875
No 26
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=1.5e-68 Score=550.62 Aligned_cols=398 Identities=31% Similarity=0.512 Sum_probs=357.6
Q ss_pred ccchhhhhhhccccccCCCCCCCCCCCChHHH---HHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCC
Q 014993 5 LGARSLCASFFTKKQKHSAAFSSTSLLFDDTQ---LQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHG 81 (415)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~ 81 (415)
....||.+++|..+.....-|..|+.+++++. +++++.+++|+++.+.+ .+.|+...+|+ ++|++|++.||++
T Consensus 20 ~~~~~~~~~lf~g~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~~~~--~~~d~~~~~p~--~~~~~l~e~Gl~~ 95 (607)
T 2uxw_A 20 FQSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDP--AKNDALEMVEE--TTWQGLKELGAFG 95 (607)
T ss_dssp -CCCCHHHHHTTTCCCCTTTSSCCCCCCHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHHTSCCH--HHHHHHHHTTTTC
T ss_pred CCCccHHHHhcCCCCCHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCH--HHhccccCCCH--HHHHHHHHcCCcC
Confidence 45678888888875444444554445565554 34889999999888755 33566788998 9999999999999
Q ss_pred CCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCC
Q 014993 82 ITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGS 161 (415)
Q Consensus 82 l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gs 161 (415)
+.+|++|||.|+++.+.+.++|+++++|+++++.+..|..++..+|..+|+++||++|+|++++|+.++|+++|||++||
T Consensus 96 l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGS 175 (607)
T 2uxw_A 96 LQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGS 175 (607)
T ss_dssp TTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSS
T ss_pred CCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Confidence 99999999999999999999999999999999888777545567888999999999999999999999999999999999
Q ss_pred CCCCceeEEEEeC--CEEEEEeEeecccCCCCCCEEEEEEEeCCCC---C--CCCeEEEEEecCCCCeeeccccccccCC
Q 014993 162 DVVGMKCKADRVD--GGYIINGNKMWCTNGPVAQTLVVYAKTDIKA---G--SKGITAFIIEKGMPGFSTAQKLDKLGMR 234 (415)
Q Consensus 162 d~~~~~t~a~~~~--~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~---~--~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~ 234 (415)
|...++|+|++++ ++|+|||+|.|||+++.||+++|+|++++.+ + ..++++|+||++.|||++.+.|+++|++
T Consensus 176 D~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~r 255 (607)
T 2uxw_A 176 DAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIK 255 (607)
T ss_dssp CGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCT
T ss_pred CcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCC
Confidence 9999999999974 4799999999999999999999999985321 1 3579999999999999999999999999
Q ss_pred CCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchH
Q 014993 235 GSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQF 314 (415)
Q Consensus 235 ~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~ 314 (415)
++++++|+|+||+||.+++||.++. |+..+...++.+|+.+++.++|+++++++.+++|+++|+|||+||++||.
T Consensus 256 g~~t~~v~fddv~VP~~~llG~~g~-----G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~ 330 (607)
T 2uxw_A 256 ASNTAEVFFDGVRVPSENVLGEVGS-----GFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGL 330 (607)
T ss_dssp TSCEEEEEEEEEEEEGGGEESSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHH
T ss_pred CCCeeEEEeccEEecHHHhcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHH
Confidence 9999999999999999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccC
Q 014993 315 IQGKTADMYTALQSSRSYVYSVARDCDNGK-VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLY 393 (415)
Q Consensus 315 vq~~la~~~~~l~aar~~~~~aa~~~d~~~-~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~ 393 (415)
+|++|++|.++++++|++++.+++.+|.+. +....++++|+++++.+.+++++++|+|||+||+++++++|+|||++..
T Consensus 331 vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~e~~l~r~~Rda~~~ 410 (607)
T 2uxw_A 331 IQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIF 410 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCccHHHHHHHhcccc
Confidence 999999999999999999999999999764 3456789999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHH
Q 014993 394 EIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 394 ~~~~G~~~~~~~~i~~~l 411 (415)
.+++|++++++..|+...
T Consensus 411 ~i~eGt~~i~~~~ia~~g 428 (607)
T 2uxw_A 411 RIFEGTNDILRLFVALQG 428 (607)
T ss_dssp GTSSSCHHHHHHHHHHHH
T ss_pred eeeCChHHHHHHHHHHHH
Confidence 999999999999886543
No 27
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=9.2e-69 Score=535.74 Aligned_cols=378 Identities=21% Similarity=0.301 Sum_probs=342.2
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhc----cC-CCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHH
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQ----SN-SFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEE 104 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~~-~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~ 104 (415)
..+++++++|++.+|+|+++++.|...++++ .+ .+|...++|++|++.||+++.+|++|||.|+++.+++.++|+
T Consensus 5 ~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~ee 84 (438)
T 3mkh_A 5 FHLSASQKGTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEE 84 (438)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHH
Confidence 3456777799999999999999987655543 22 565112899999999999999999999999999999999999
Q ss_pred HHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcC--CceeEEEecCCCCCC-----CCCCceeEEEEeCCEE
Q 014993 105 ISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISG--EHVGALAMSEPNAGS-----DVVGMKCKADRVDGGY 177 (415)
Q Consensus 105 la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g--~~~~~~a~tep~~gs-----d~~~~~t~a~~~~~g~ 177 (415)
|++.|+++++.+..+. ++...+..+|+++ +++|++++++| +.++|+++|||++|| |...++|+|++++|||
T Consensus 85 la~~~~~~~~~~~~~~-~~~~~l~~~g~~~-~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~ 162 (438)
T 3mkh_A 85 CYSVEPSAALTIFATG-LGLTPINLAAGPQ-HAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEW 162 (438)
T ss_dssp HHHHCHHHHHHHHHHH-HHHHHHHHHCCGG-GHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEE
T ss_pred HHhhChhHHHHHHHhh-HHHHHHHhhCCHH-HHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCEE
Confidence 9999999988776664 6666778899999 99999999986 589999999999998 6889999999999999
Q ss_pred EEEeEeecccCCC-----CCCEEEEEEEeCC-----C-CCCCCeEEEEEecCC-----CC-eeeccccccccCCCCCcee
Q 014993 178 IINGNKMWCTNGP-----VAQTLVVYAKTDI-----K-AGSKGITAFIIEKGM-----PG-FSTAQKLDKLGMRGSDTCE 240 (415)
Q Consensus 178 ~LnG~k~~vs~~~-----~ad~~~v~a~~~~-----~-~~~~~~~~~lV~~~~-----~G-v~v~~~~~~~Gl~~~~~~~ 240 (415)
+|||+|.||||+. .||+++|+|++++ + ++..++++|+||++. || |++.+.|+++|++++++++
T Consensus 163 ~lnG~K~~is~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~~~ 242 (438)
T 3mkh_A 163 VINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPH 242 (438)
T ss_dssp EEEEEECSCTTTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCCCE
T ss_pred EEEeEEEEecCCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCceE
Confidence 9999999999997 8999999999853 1 223579999999875 98 9999999999999999999
Q ss_pred EEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccC-CCCCcchHHHHHH
Q 014993 241 LVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFG-RPLGEFQFIQGKT 319 (415)
Q Consensus 241 v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g-~pi~~~q~vq~~l 319 (415)
|+||||+||++++||.++. |+..+...++.+|+.+++.++|+++++++.+++|+++|++|| +||++||.+|++|
T Consensus 243 v~fddv~VP~~~~lg~~~~-----g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~l 317 (438)
T 3mkh_A 243 VRYTNVRVPTKNVLCPAGQ-----GAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLL 317 (438)
T ss_dssp EEEEEEEEEGGGEEECTTT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHH
T ss_pred EEECcEEECHHHcCCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHH
Confidence 9999999999999999888 999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCC----chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcc
Q 014993 320 ADMYTALQSSRSYVYSVARDCDNGKVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEI 395 (415)
Q Consensus 320 a~~~~~l~aar~~~~~aa~~~d~~~~~----~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~ 395 (415)
++|.++++++|++++++++.++.+.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+
T Consensus 318 a~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~i 397 (438)
T 3mkh_A 318 SGVKIQTEAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYDLQRPFSDLLNTAVVLPI 397 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCTTSSHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhccCCCcHHHHHHHhheeee
Confidence 999999999999999999999987542 2236789999999999999999999999999999999999999999999
Q ss_pred cCChH-HHHHHHHHHHHHhc
Q 014993 396 GAGTS-EIRRMIIGRALLKQ 414 (415)
Q Consensus 396 ~~G~~-~~~~~~i~~~l~~~ 414 (415)
++|++ ++++..|++.++++
T Consensus 398 ~~Gt~~~v~~~~i~r~ll~~ 417 (438)
T 3mkh_A 398 FDGGNVGIRRRHLQQLMLKP 417 (438)
T ss_dssp SSSCTTTTHHHHHHHHHHST
T ss_pred ecCChHHHHHHHHHHHHHhc
Confidence 99999 99999999999875
No 28
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=1.2e-67 Score=527.77 Aligned_cols=376 Identities=19% Similarity=0.315 Sum_probs=340.6
Q ss_pred ChHHHHHHHHHHHHHHhhccCcchhhhhcc----CCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHh
Q 014993 32 FDDTQLQFKESVGQFARENIAPRAANIDQS----NSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISR 107 (415)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~----~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~ 107 (415)
.++++.++++.+++|+++++.|...+.|+. +.+|...++|++|++.||+++.+|++|||.|+++.+.+.++|+|++
T Consensus 6 ~~~e~~~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~ 85 (439)
T 2c12_A 6 LSPSQLEARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFA 85 (439)
T ss_dssp CCHHHHHHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHh
Confidence 456677999999999999999876665543 3455112899999999999999999999999999999999999999
Q ss_pred ccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhh--cCCceeEEEecCCCCCC-----CCCCceeEEEEeCCEEEEE
Q 014993 108 ASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI--SGEHVGALAMSEPNAGS-----DVVGMKCKADRVDGGYIIN 180 (415)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~--~g~~~~~~a~tep~~gs-----d~~~~~t~a~~~~~g~~Ln 180 (415)
.|+++++.+..|. ++...+..+|+++||++|+|+++ +|+.++|+++|||++|| |...++|+|++++|||+||
T Consensus 86 ~~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~ln 164 (439)
T 2c12_A 86 VEPATSITIVATA-LGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVIS 164 (439)
T ss_dssp TCCTTHHHHHHHH-HHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEE
T ss_pred hChHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEEEEE
Confidence 9999998877775 66677889999999999999999 69999999999999997 5788899999999999999
Q ss_pred eEeecccCCC-----CCCEEEEEEEe-C----CC----CCCCCeEEEEEecCCC------CeeeccccccccCCCCCcee
Q 014993 181 GNKMWCTNGP-----VAQTLVVYAKT-D----IK----AGSKGITAFIIEKGMP------GFSTAQKLDKLGMRGSDTCE 240 (415)
Q Consensus 181 G~k~~vs~~~-----~ad~~~v~a~~-~----~~----~~~~~~~~~lV~~~~~------Gv~v~~~~~~~Gl~~~~~~~ 240 (415)
|+|.|+||+. .||+++|+|++ + ++ ++..++++|+||++.| ||++.++|+++|++++++++
T Consensus 165 G~K~~is~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~~~~ 244 (439)
T 2c12_A 165 GEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPH 244 (439)
T ss_dssp EEEECCTTTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCCCCE
T ss_pred eEEEeecCCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCCceE
Confidence 9999999997 99999999998 5 32 2345799999999998 78899999999999999999
Q ss_pred EEEeeeeeCCCCcccCCCCCCCcchHH-HHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHh-hcccCCCCCcchHHHHH
Q 014993 241 LVFENCFVPNENVLGQEGKGCNSFGVY-VMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQ-REQFGRPLGEFQFIQGK 318 (415)
Q Consensus 241 v~f~~v~Vp~~~llg~~~~~~~~~g~~-~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~-R~~~g~pi~~~q~vq~~ 318 (415)
|+||||+||++++||.++. |+. .....+...|+.+++.++|+++++++.+++|+++ |.+||+||+++|.+|++
T Consensus 245 v~fddv~VP~~~~lg~~~~-----g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~ 319 (439)
T 2c12_A 245 TRFTEFHVPHENLLCTPGL-----KAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK 319 (439)
T ss_dssp EEEEEEEEEGGGBCSCTTH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHH
T ss_pred EEEccEEecHHHcCCCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHH
Confidence 9999999999999998877 888 7888899999999999999999999999999996 78899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCC----chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCc
Q 014993 319 TADMYTALQSSRSYVYSVARDCDNGKVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE 394 (415)
Q Consensus 319 la~~~~~l~aar~~~~~aa~~~d~~~~~----~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~ 394 (415)
|++|.++++++|++++++++.++.+.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.
T Consensus 320 la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~ 399 (439)
T 2c12_A 320 LIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYAKDMSFPRLLNEVMCYP 399 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSSHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEcCCChHHHHHHhhhcce
Confidence 9999999999999999999999987542 235789999999999999999999999999999999999999999999
Q ss_pred ccCChH-HHHHHHHHHHHHh
Q 014993 395 IGAGTS-EIRRMIIGRALLK 413 (415)
Q Consensus 395 ~~~G~~-~~~~~~i~~~l~~ 413 (415)
+++|++ +++++.+++.+..
T Consensus 400 i~~G~~~~~~~~~i~~~l~~ 419 (439)
T 2c12_A 400 LFDGGNIGLRRRQMQRVMAL 419 (439)
T ss_dssp TSSSCTTTTHHHHHHHHHTS
T ss_pred eecCChHHHHHHHHHHHHhc
Confidence 999988 7999999886643
No 29
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.1e-68 Score=527.80 Aligned_cols=378 Identities=20% Similarity=0.305 Sum_probs=333.9
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCcchh---hhhcc-----CCCC---CcHHHHHHHHhcCCCCCCCCcCCCCCCCCHH
Q 014993 28 TSLLFDDTQLQFKESVGQFARENIAPRAA---NIDQS-----NSFP---QDVNLWKLMGNFNLHGITAPQEYGGLGLGYL 96 (415)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~-----~~~p---~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~ 96 (415)
++...++++.++++.+++|+++++.|... ++++. ..++ ...++|++|++.||+++.+|+ |.|+++.
T Consensus 19 m~~~~~~e~~~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~---G~g~~~~ 95 (428)
T 2wbi_A 19 QLFVQTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPA---VSGLSHV 95 (428)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHH---HHCCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCC---CCCCCHH
Confidence 44445677779999999999998877554 54432 2332 123899999999999999999 8899999
Q ss_pred HHHHHHHHHHhcccc-chhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCC-CCCCCCCceeEEEEeC
Q 014993 97 YHCIAMEEISRASGS-VGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPN-AGSDVVGMKCKADRVD 174 (415)
Q Consensus 97 ~~~~v~e~la~~~~~-~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~-~gsd~~~~~t~a~~~~ 174 (415)
+.+.++|++++++.+ .++....+...+...|..+|+++||++|+|++++|+.++|+++|||+ +|||...+.|+|++++
T Consensus 96 ~~~~v~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~ 175 (428)
T 2wbi_A 96 DYALIAEETGKCFFAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDE 175 (428)
T ss_dssp HHHHHHHHHTTSTTHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEET
T ss_pred HHHHHHHHHHhhcchhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeC
Confidence 999999999999743 33322222224566788899999999999999999999999999999 9999999999999999
Q ss_pred CEEEEEeEeecccCCCC--CCEEEEEEEeCCCC--CCCCeEEEEEecCCCCeeeccccccccCCCCC---ceeEEEeeee
Q 014993 175 GGYIINGNKMWCTNGPV--AQTLVVYAKTDIKA--GSKGITAFIIEKGMPGFSTAQKLDKLGMRGSD---TCELVFENCF 247 (415)
Q Consensus 175 ~g~~LnG~k~~vs~~~~--ad~~~v~a~~~~~~--~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~---~~~v~f~~v~ 247 (415)
|||+|||+|.|+||+.. ||+++|+|+++++. ++.++++|+||++.|||++.++|+++|+++++ +++|+||||+
T Consensus 176 ~g~~lnG~K~~is~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~ 255 (428)
T 2wbi_A 176 DSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVR 255 (428)
T ss_dssp TEEEEEEEEEEEETTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEE
T ss_pred CEEEEEeEEeccCCCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceE
Confidence 99999999999999988 99999999986542 34579999999999999999999999999985 9999999999
Q ss_pred eCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHH
Q 014993 248 VPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQ 327 (415)
Q Consensus 248 Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~ 327 (415)
||++++||.++. |+......+..+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|++|.++++
T Consensus 256 VP~~~~lg~~g~-----g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~ 330 (428)
T 2wbi_A 256 VPATNLILGEGR-----GFEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIE 330 (428)
T ss_dssp EEGGGBCSCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHH
T ss_pred ECHHHhcCCccc-----hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHH
Confidence 999999998887 998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC-C-CCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHH
Q 014993 328 SSRSYVYSVARDCDN-G-KVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRM 405 (415)
Q Consensus 328 aar~~~~~aa~~~d~-~-~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~ 405 (415)
++|++++++++.++. + .+....++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|+++++++
T Consensus 331 aar~~~~~aa~~~d~~g~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~~~~~~~r~~Rda~~~~i~~G~~~~~~~ 410 (428)
T 2wbi_A 331 KIRLLTLKAAHSMDTLGSAGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVSQDYPLANMYAITRVLRLADGPDEVHLS 410 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGSTTSSHHHHHHHHHHHTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcHHHHHHHHhhcEecCChHHHHHH
Confidence 999999999999886 2 34556789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 014993 406 IIGRALLK 413 (415)
Q Consensus 406 ~i~~~l~~ 413 (415)
.|++.+++
T Consensus 411 ~ia~~~l~ 418 (428)
T 2wbi_A 411 AIATMELR 418 (428)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 30
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=2.6e-65 Score=504.39 Aligned_cols=367 Identities=22% Similarity=0.313 Sum_probs=324.5
Q ss_pred CCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCC-CCHHHHHHHHHHHHhc
Q 014993 30 LLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEISRA 108 (415)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g-~~~~~~~~v~e~la~~ 108 (415)
..+++++.++++.+++|+. .+.|.+.++|+++.+|. ++|++|++.||+++.+|++|||.| .++.+++.++|+|+++
T Consensus 7 ~~lt~e~~~~~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~ 83 (395)
T 3mxl_A 7 APLTPAGRTVVDLLAGVIP-RISAEAADRDRTGTFPV--EAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEA 83 (395)
T ss_dssp SCCSHHHHHHHHHHTTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHH-HHhhchHHHhhhCCCCH--HHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhh
Confidence 3445666699999999986 58888889999999999 999999999999999999999999 9999999999999999
Q ss_pred cccchhHHhhhhhHHHHHH--HhcCCHHHH---HHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEe
Q 014993 109 SGSVGLSYGAHSNLCINQL--VRHGSPAQK---DKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNK 183 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l--~~~g~~~q~---~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k 183 (415)
|+++++.+..|...+..++ ..+|+++|| ++|+|++.+|+.++|+++|||++|+ ..++ ++++|||+|||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~--~~~~---t~~~~g~~lnG~K 158 (395)
T 3mxl_A 84 DASTALAWHVQLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVV--TELH---SDGAGGWLLSGRK 158 (395)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCC--CEEE---ECSSSCEEEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCC--CceE---EecCCEEEEeeEE
Confidence 9999998877754444443 356999999 9999999999999999999998652 2222 2378899999999
Q ss_pred ecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCccc--CCCCCC
Q 014993 184 MWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGKGC 261 (415)
Q Consensus 184 ~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~~~~~ 261 (415)
.|+||+..||+++|+++++++++..++++|+||++.|||++.+.|+++|++++++++|+||||+||+++++| .++.
T Consensus 159 ~~is~a~~Ad~~~v~a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~-- 236 (395)
T 3mxl_A 159 VLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGA-- 236 (395)
T ss_dssp EEETTGGGCSEECCCEEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSC--
T ss_pred EEecCccccCEEEEEEEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCc--
Confidence 999999999999999999766556689999999999999999999999999999999999999999999998 5555
Q ss_pred CcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014993 262 NSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD 341 (415)
Q Consensus 262 ~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d 341 (415)
++......+..+|+.+++.++|+++++++.+++|++ |+||+++|.+|++|++|.++++++|++++++++.+|
T Consensus 237 ---g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d 308 (395)
T 3mxl_A 237 ---RRDAVLAGQTVSSITMLGIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNAD 308 (395)
T ss_dssp ---CCTTHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444445568899999999999999999999999 558999999999999999999999999999999887
Q ss_pred C------CCCC------chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCc-ccCChHHHHHHHHH
Q 014993 342 N------GKVD------PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE-IGAGTSEIRRMIIG 408 (415)
Q Consensus 342 ~------~~~~------~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~-~~~G~~~~~~~~i~ 408 (415)
. ..+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++..+ +++|+++++++.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~~~~~~~r~~Rda~~~~~~~~g~~~~~~~~ia 388 (395)
T 3mxl_A 309 AASVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSLVGGLAYTAGHPLSRLYRDVRAGGFMQPYSYVDAVDYLS 388 (395)
T ss_dssp HHHTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGBTTSHHHHHHHHGGGGGGCSSCCHHHHHHHHH
T ss_pred hcccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhccCCCcHHHHHHHHHhccccCCCCHHHHHHHHH
Confidence 5 1111 135678899999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHhc
Q 014993 409 RALLKQ 414 (415)
Q Consensus 409 ~~l~~~ 414 (415)
+.+++-
T Consensus 389 ~~~Lgl 394 (395)
T 3mxl_A 389 GQALGL 394 (395)
T ss_dssp HHHSCC
T ss_pred HHHhCC
Confidence 999873
No 31
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=9.2e-65 Score=503.24 Aligned_cols=366 Identities=17% Similarity=0.187 Sum_probs=321.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
+..+++++.++++.+++|+++ +.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+|++.
T Consensus 15 ~~~~~~~~~~l~~~~r~~~~~-~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~ 91 (414)
T 2or0_A 15 ENLYFQGMGRVLDRIEVVAEE-IRGQAVQSEADCRLTD--AAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAAL 91 (414)
T ss_dssp --------CHHHHHHHHTHHH-HHHHHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHH-HHHhHHHHHhcCCCCH--HHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhh
Confidence 344456666999999999875 8888888899999999 9999999999999999999999999999999999999999
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccC
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTN 188 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~ 188 (415)
|+++++++..|. ++...+..+|+++||++|+| +|+.++|+++| | .|+|++++|||+|||+|.|+||
T Consensus 92 ~~~~~~~~~~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~ 157 (414)
T 2or0_A 92 DGASGWVTGIVG-VHPWELAFADPQVQEEIWGE---DNDTWMASPYA-P---------MGVATPVDGGYVLKGRWSFSSG 157 (414)
T ss_dssp CHHHHHHHHHHT-THHHHHTTSCHHHHHHHHSS---CTTCCEECCCS-C---------CEEEEEETTEEEEEEEEEEETT
T ss_pred ChHHHHHHHHHH-HHHHHHHhCCHHHHHHHHcc---CCCeEEEeccC-C---------CceeEEECCeEEEEeeEeccCC
Confidence 999998877775 67778889999999999999 69989999988 4 5799999999999999999999
Q ss_pred CCCCCEEEEEEEeCCCCCCC---CeEEEEEecCCCCeeec-cccccccCCCCCceeEEEeeeeeCCCCcccC--------
Q 014993 189 GPVAQTLVVYAKTDIKAGSK---GITAFIIEKGMPGFSTA-QKLDKLGMRGSDTCELVFENCFVPNENVLGQ-------- 256 (415)
Q Consensus 189 ~~~ad~~~v~a~~~~~~~~~---~~~~~lV~~~~~Gv~v~-~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~-------- 256 (415)
+..||+++|+++++++++.. ++++|+||++ ||++. +.|+++|++++++++|+||||+||++++||.
T Consensus 158 a~~Ad~~~v~a~~~~~~g~~~~~g~~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~ 235 (414)
T 2or0_A 158 TDHCQWAFLGAMVGDGEGGIATPSSLHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRA 235 (414)
T ss_dssp GGGCSEEEEEEEECC-----CCCSEEEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHH
T ss_pred CchhhEEEEEEEecCCCCCcccceeEEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCC
Confidence 99999999999986433334 8999999997 89998 8999999999999999999999999999975
Q ss_pred CCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhccc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 014993 257 EGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQF-GRPLGEFQFIQGKTADMYTALQSSRSYVYS 335 (415)
Q Consensus 257 ~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~-g~pi~~~q~vq~~la~~~~~l~aar~~~~~ 335 (415)
++. ....|+......+..+|+.+++.++|+++++++.+++|+++|+|| |+||+++|.+|++|++|.++++++|+++++
T Consensus 236 ~g~-~~~~g~~~~~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~ 314 (414)
T 2or0_A 236 QKE-AGRPEPLFNMPYSCMFPLGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIE 314 (414)
T ss_dssp HHH-HTCSCSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-ccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 000033344456778899999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhh----CCCCCc----hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCC-hHHHHHHH
Q 014993 336 VARDCD----NGKVDP----KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG-TSEIRRMI 406 (415)
Q Consensus 336 aa~~~d----~~~~~~----~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G-~~~~~~~~ 406 (415)
+++.++ .+.+.. ..++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++| +++++++.
T Consensus 315 aa~~~~~~~~~g~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~t~~~~~~~ 394 (414)
T 2or0_A 315 TADRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADEIFARAGGGALHYKTPMQRFWRDAHAGLAHAVHVPGPTNHA 394 (414)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTSSHHHHHHHHHHHHTSGGGCCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHhhccCCchhHHHHHHHHHHcCCcccchHHHHH
Confidence 999998 665432 368899999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhc
Q 014993 407 IGRALLKQ 414 (415)
Q Consensus 407 i~~~l~~~ 414 (415)
+++.+++.
T Consensus 395 ia~~~lg~ 402 (414)
T 2or0_A 395 SALTQLGG 402 (414)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 99999874
No 32
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=3.8e-64 Score=499.90 Aligned_cols=358 Identities=18% Similarity=0.228 Sum_probs=322.7
Q ss_pred HHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHh
Q 014993 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (415)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~ 117 (415)
++++.+++|++ .+.+...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+|+++|+++++.+.
T Consensus 39 ~l~~~~r~~~~-~~~~~a~~~d~~~~~p~--~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~ 115 (422)
T 2jbr_A 39 SMLEKIQQILP-QIAKNAESAEQLRRVPD--ENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFS 115 (422)
T ss_dssp CHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHcCCCCH--HHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHH
Confidence 68999999986 68888888888999999 9999999999999999999999999999999999999999999998777
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 014993 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (415)
Q Consensus 118 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v 197 (415)
.|. ++...+..+|+++||++|+++ |+.++|++++ | .|+|++++|||+|||+|.|+||+..||+++|
T Consensus 116 ~~~-~~~~~l~~~g~~~q~~~~l~~---g~~~~a~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 181 (422)
T 2jbr_A 116 LLC-THSHQIAMFSKQLQDEIWLKD---PDATASSSIA-P---------FGKVEEVEGGIILNGDYGWSSGCDHAEYAIV 181 (422)
T ss_dssp HHH-HHHHHHTTSCHHHHHHHHTTC---TTCCEEEECS-C---------CSEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred HHH-HHHHHHHhCCHHHHHHHHccC---CCeEEEeecC-C---------CeeEEEeCCEEEEeeeEeeecCCccccEEEE
Confidence 664 677788899999999999996 8889999988 4 4699999999999999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccCC--------CCCCCcchHHHH
Q 014993 198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQE--------GKGCNSFGVYVM 269 (415)
Q Consensus 198 ~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~--------~~~~~~~g~~~~ 269 (415)
+++++++++..++++|+||++ ||++.+.|+++|++++++++|+||||+||+++++|.. +.+.....+...
T Consensus 182 ~a~~~~~~g~~g~~~flV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~ 259 (422)
T 2jbr_A 182 GFNRFDADGNKIYSFGVIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFY 259 (422)
T ss_dssp EEEEECTTSCEEEEEEEEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSS
T ss_pred EEEecCCCCCceeEEEEEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccc
Confidence 999865444558999999997 8999999999999999999999999999999999864 431000014444
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CC
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE--QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----NG 343 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~--~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d----~~ 343 (415)
...+..+|+.+++.++|+++++++.+++|+++|+ |||+||+++|.+|++|++|.++++++|++++++++.++ .+
T Consensus 260 ~~~~~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g 339 (422)
T 2jbr_A 260 TPYRPYFASGFSAVSLGIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNH 339 (422)
T ss_dssp SCHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5567788999999999999999999999999998 99999999999999999999999999999999999998 66
Q ss_pred CCC----chhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChH-HHHHHHHHHHHHhc
Q 014993 344 KVD----PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLKQ 414 (415)
Q Consensus 344 ~~~----~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~-~~~~~~i~~~l~~~ 414 (415)
.+. ...++++|+++++.+.++++.++|+|||.||+++++++|+|||++...+++|++ +++++.+++.+++.
T Consensus 340 ~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~G~~~e~~~~~ia~~~lg~ 415 (422)
T 2jbr_A 340 QYPNKETLAFWRTNQAYAVKMCIEAVDRLMAAAGATSFMDNSELQRLFRDAHMTGAHAYTDYDVCAQILGRELMGM 415 (422)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGBTTCHHHHHHHHHHHHTSSTTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhhhcCCcHHHHHHHHHHHhcCCccchhHHHHHHHHHHhCC
Confidence 542 246889999999999999999999999999999999999999999999999999 99999999999874
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=1.8e-63 Score=497.64 Aligned_cols=368 Identities=21% Similarity=0.321 Sum_probs=321.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCC-CCHHHHHHHHHHHHh
Q 014993 29 SLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLG-LGYLYHCIAMEEISR 107 (415)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g-~~~~~~~~v~e~la~ 107 (415)
+..+++++.++++.+++|+. .+.+.+.+.|+++.+|. ++|++|++.||+++.+|++|||.| .++.+++.++|+|++
T Consensus 17 ~~~lt~e~~~l~~~~r~~~~-~~~~~a~~~d~~~~~~~--~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~ 93 (439)
T 3m9v_A 17 YAPVTPAGRVLLDRLAAHLP-RIRSTAAEHDRDGTFPT--DTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVAR 93 (439)
T ss_dssp SSCSSHHHHHHHHHHHTTHH-HHHHHHHHHHHHTCCCH--HHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH-HHhhhHHHHHhcCCCCH--HHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHh
Confidence 35567777799999999985 68888888999999999 999999999999999999999999 899999999999999
Q ss_pred ccccchhHHhhhhhHHHHH--HHhcCCHHH---HHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeE
Q 014993 108 ASGSVGLSYGAHSNLCINQ--LVRHGSPAQ---KDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGN 182 (415)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~--l~~~g~~~q---~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~ 182 (415)
.|+++++.+.+|...+..+ +..+|+++| |++|++++++|+.++|+++|||+. |...+.+ +++|||+|||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~--~~~~~~t---~~~~g~vlnG~ 168 (439)
T 3m9v_A 94 ADASTALALHMQLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHT--AVTTLRP---DGAGGWLLSGR 168 (439)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTT--CCCEEEE---CSSSCEEEEEE
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCC--CCCceee---ccCCEEEEEeE
Confidence 9999998887775444443 346799999 999999999999999999999985 3333332 37889999999
Q ss_pred eecccCCCCCCEEEEEEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCccc--CCCCC
Q 014993 183 KMWCTNGPVAQTLVVYAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLG--QEGKG 260 (415)
Q Consensus 183 k~~vs~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg--~~~~~ 260 (415)
|.|+||+.+||+++|+++++++++..++++|+||++.|||++.+.|+++|++++++++|+||||+||++++|| ..+.
T Consensus 169 K~~~s~a~~Ad~~~v~art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~- 247 (439)
T 3m9v_A 169 KTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGA- 247 (439)
T ss_dssp EEEETTGGGCSEEEECEEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--C-
T ss_pred EEeecCccccCEEEEEEEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCc-
Confidence 9999999999999999999766556789999999999999999999999999999999999999999999998 5554
Q ss_pred CCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 014993 261 CNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDC 340 (415)
Q Consensus 261 ~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~ 340 (415)
|+.........+|+.+++.++|+++++++.+++|++ ++||+++|.+|++|++|.++++++|++++++++.+
T Consensus 248 ----g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~a~-----~r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~ 318 (439)
T 3m9v_A 248 ----RNDAVLAGQTVSSVSVLGVYVGVAQAAYDTAVAALE-----RRPEPPQAAALTLVAEIDSRLYALRATAGSALTAA 318 (439)
T ss_dssp ----CCGGGHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHH-----TCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333334557889999999999999999999999 45899999999999999999999999999998877
Q ss_pred hCC------C------CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCc-ccCChHHHHHHHH
Q 014993 341 DNG------K------VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYE-IGAGTSEIRRMII 407 (415)
Q Consensus 341 d~~------~------~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~-~~~G~~~~~~~~i 407 (415)
+.. . .....++++|+++++.+.++++.++|+|||.||+++++++|+|||++..+ +|+|+++++++.+
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~~~~~l~r~~Rda~~~~~~~~gt~~~~~~~i 398 (439)
T 3m9v_A 319 DALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSLVGGASYTAGHPLARLLRDVQAGRFMQPYAYVDAVDFL 398 (439)
T ss_dssp HHHHHCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTSHHHHHHHHTTGGGTSSSCCHHHHHHHH
T ss_pred HhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhcCCChHHHHHHHHHhhhhhCCCchHHHHHHH
Confidence 641 0 11234677899999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhc
Q 014993 408 GRALLKQ 414 (415)
Q Consensus 408 ~~~l~~~ 414 (415)
++.+++.
T Consensus 399 ~~~~lg~ 405 (439)
T 3m9v_A 399 SAQALGI 405 (439)
T ss_dssp HHHHTTC
T ss_pred HHHHhCC
Confidence 9999874
No 34
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=1.5e-63 Score=491.71 Aligned_cols=357 Identities=18% Similarity=0.234 Sum_probs=320.5
Q ss_pred HHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccchhHHh
Q 014993 38 QFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 117 (415)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~ 117 (415)
++++.+++|++ .+.|...+.|+++.+|. ++|++|++.||+++.+|++|||.|+++.+.+.++|+|++.|+++++++.
T Consensus 11 ~l~~~~~~~~~-~~~~~~~~~d~~~~~p~--~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~ 87 (394)
T 2rfq_A 11 EVMQRLDALLP-TLRERAQETEDLRRIPD--DSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSS 87 (394)
T ss_dssp HHHHHHHHHHH-HHHHTHHHHHHHTSCCH--HHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhHHHHHhcCCCCH--HHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHH
Confidence 68999999986 58888888899999999 9999999999999999999999999999999999999999999998877
Q ss_pred hhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEE
Q 014993 118 AHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVV 197 (415)
Q Consensus 118 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v 197 (415)
.|. ++...+..+|+++|+++|++ +|+.++|++++ | .|+|++++|||+|||+|.|+||+..||+++|
T Consensus 88 ~~~-~~~~~l~~~g~~~q~~~~l~---~g~~~~~~a~t-p---------~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v 153 (394)
T 2rfq_A 88 IIG-VHNWHLALFSQQAQEDVWGN---DTDVRISSSYA-P---------MGAGQVVDGGYTVNGAWAWSSGCDHASWAVL 153 (394)
T ss_dssp HHH-HHHHHHTTSCHHHHHHHHSS---CTTCCEEEECS-C---------SEEEEEETTEEEEEEEEEEETTGGGCSEEEE
T ss_pred HHH-HHHHHHHhCCHHHHHHHhCC---CCCeEEEeccC-C---------CceEEEeCCeEEEeeeEeccCCCcccceEEE
Confidence 775 67778889999999999998 68989999987 4 5799999999999999999999999999999
Q ss_pred EEEeCCCCCCCCeEEEEEecCCCCeeeccccccccCCCCCceeEEEeeeeeCCCCcccC--------CCCCCCcchHHHH
Q 014993 198 YAKTDIKAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQ--------EGKGCNSFGVYVM 269 (415)
Q Consensus 198 ~a~~~~~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~--------~~~~~~~~g~~~~ 269 (415)
++++++++++.++++|+||++ ||++.+.|+++|++++++++|+||||+||++++++. ++. ....|+...
T Consensus 154 ~a~~~~~g~~~~~~~flV~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~-~~~~g~~~~ 230 (394)
T 2rfq_A 154 GGPVIKDGRPVDFVSFLIPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGL-ERNTAPVYK 230 (394)
T ss_dssp EEEEEETTEEEEEEEEEEEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGG-TTCCCGGGG
T ss_pred eeeecCCCCCCceeEEEEEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCc-ccCCCcccc
Confidence 999843222347899999997 899999999999999999999999999999999975 220 000133344
Q ss_pred HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh----C
Q 014993 270 MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQRE---QFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCD----N 342 (415)
Q Consensus 270 ~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~---~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d----~ 342 (415)
...+..+|+.+++.++|+++++++.+++|+++|+ |||+||+++|.+|++|++|.++++++|++++++++.++ .
T Consensus 231 ~~~~~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~ 310 (394)
T 2rfq_A 231 MPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVA 310 (394)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788999999999999999999999999999 99999999999999999999999999999999999998 6
Q ss_pred CCCCc----hhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCC-hHHHHHHHHHHHHHhc
Q 014993 343 GKVDP----KDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAG-TSEIRRMIIGRALLKQ 414 (415)
Q Consensus 343 ~~~~~----~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G-~~~~~~~~i~~~l~~~ 414 (415)
+.+.. ..++++|+++++.+.++++.++|+|||.||+++++++|+|||++.+.+++| +++++++.+++.+++.
T Consensus 311 g~~~~~~~~~~~~~aK~~a~~~a~~~~~~a~q~~Gg~g~~~~~~l~r~~Rda~~~~~~~g~~~~~~~~~i~~~llg~ 387 (394)
T 2rfq_A 311 GEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGL 387 (394)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGBTTCHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhhcCCcHHHHHHHHHHHHcccccCchhHHHHHHHHHhCC
Confidence 65432 368899999999999999999999999999999999999999999999999 9999999999999873
No 35
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=2e-56 Score=464.83 Aligned_cols=369 Identities=17% Similarity=0.188 Sum_probs=313.3
Q ss_pred hHHHHHHHHHHHHHHhhccCcchhhhhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhccccc
Q 014993 33 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRASGSV 112 (415)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~~~~~ 112 (415)
++++.++++.+++|+++.-.. ....+....+++ +.|+.|++.|++. .+|++|| .+..+...+.|++ +.++
T Consensus 28 ~~e~~~lr~~vr~~l~~~~~~-~~~~~~~~~~~~--~~~~~l~~~g~l~-~~p~e~G---~~~~~~~~v~e~~---~~~~ 97 (659)
T 1w07_A 28 SRHAFEVSDRIARLVASDPVF-EKSNRARLSRKE--LFKSTLRKCAHAF-KRIIELR---LNEEEAGRLRHFI---DQPA 97 (659)
T ss_dssp SHHHHHHHHHHHHHHHTCGGG-CCTTTTSSCHHH--HHHHHHHHHHHHH-HHHHHTT---CCHHHHHHHHHHH---CCCC
T ss_pred ChHHHHHHHHHHHHHhcCccc-ccCCccCCChHH--HHHHHHHHHHHHH-HhHHHhC---CCchHHHHHHHHh---ccch
Confidence 366779999999999765222 111122234555 8999999988887 4788888 3566777666665 4454
Q ss_pred hhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----eEeec
Q 014993 113 GLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----GNKMW 185 (415)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln-----G~k~~ 185 (415)
+ +..|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+..++|+|+++ +|||+|| |+|.|
T Consensus 98 ~--~~~~~~l~~~~l~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~ 175 (659)
T 1w07_A 98 Y--VDLHWGMFVPAIKGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWW 175 (659)
T ss_dssp H--HHHHHHTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEEC
T ss_pred h--hhhHHhHHHHHHHHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEe
Confidence 4 5566546777888999999999999999999999999999999999999999999999 6899999 99999
Q ss_pred ccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEec-C------CCCeeecccccccc---CCCCCceeEEEeeeeeCCCCcc
Q 014993 186 CTN-GPVAQTLVVYAKTDIKAGSKGITAFIIEK-G------MPGFSTAQKLDKLG---MRGSDTCELVFENCFVPNENVL 254 (415)
Q Consensus 186 vs~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~~-~------~~Gv~v~~~~~~~G---l~~~~~~~v~f~~v~Vp~~~ll 254 (415)
+|| +..||+++|+|++++++++.++++|+||. + .|||++.+.|+++| +++++++.|.|+||+||++++|
T Consensus 176 is~~a~~Ad~~lV~Ar~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lL 255 (659)
T 1w07_A 176 PGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQML 255 (659)
T ss_dssp CTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBC
T ss_pred ecCCCCCCCEEEEEEEECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhc
Confidence 999 89999999999986543445899999994 5 69999999999999 9999999999999999999999
Q ss_pred cC------CCCCCCc-chHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC-------CCCcchHHHHHHH
Q 014993 255 GQ------EGKGCNS-FGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTA 320 (415)
Q Consensus 255 g~------~~~~~~~-~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~-------pi~~~q~vq~~la 320 (415)
|. ++..... .++......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.+|++|+
T Consensus 256 g~~~~v~~~g~~~~~~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa 335 (659)
T 1w07_A 256 MRLSKVTREGEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLF 335 (659)
T ss_dssp CSSEEECTTCCEEECSSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHH
T ss_pred CCcCccCCCCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhccHHHHHHHH
Confidence 85 3431000 12234456678999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-------CCCC-----CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHH
Q 014993 321 DMYTALQSSRSYVYSVARDCD-------NGKV-----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388 (415)
Q Consensus 321 ~~~~~l~aar~~~~~aa~~~d-------~~~~-----~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~R 388 (415)
+|.+++++++.+++++++.++ .+.+ ....++++|+++++.+.++++.|+|+|||+||+++++++++||
T Consensus 336 ~~~a~~~a~~~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~r 415 (659)
T 1w07_A 336 PLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYLWCSGLPELFA 415 (659)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGBGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCHHHHHH
Confidence 999999999999999988763 3332 2346789999999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHHHh
Q 014993 389 DAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 389 da~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
|++...+++|++++++..+++.+++
T Consensus 416 da~~~~~~eG~~~v~~~~iar~lL~ 440 (659)
T 1w07_A 416 VYVPACTYEGDNVVLQLQVARFLMK 440 (659)
T ss_dssp HHGGGGTTTSCHHHHHHHHHHHHHH
T ss_pred hcceeEEEeCChHHHHHHHHHHHHH
Confidence 9999999999999999999999886
No 36
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=8.8e-56 Score=448.95 Aligned_cols=328 Identities=23% Similarity=0.343 Sum_probs=294.6
Q ss_pred cHHHHHHHHhcCCCCCCC--CcCCCCCCCCHHHHHHHHHHHHhccccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhh
Q 014993 67 DVNLWKLMGNFNLHGITA--PQEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLI 144 (415)
Q Consensus 67 ~~~~~~~l~~~Gl~~l~~--P~~~GG~g~~~~~~~~v~e~la~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~ 144 (415)
..++++.|.+.||+++.+ |++|||.+......... +..+........++. .+...|..+| ++|+++|+|++.
T Consensus 88 ~~~~~~~l~e~Gl~~l~~~~p~~~Gg~~~~~~~~~~~----~~~~~~~~~p~~~t~-~~~~~L~~~g-~eqk~~~lp~l~ 161 (541)
T 3djl_A 88 WHLLMQALCTNRVHNLAWEEDARSGAFVARAARFMLH----AQVEAGSLCPITMTF-AATPLLLQML-PAPFQDWTTPLL 161 (541)
T ss_dssp HHHHHHHHHHTTTTTGGGSTTCCTTHHHHHHHHHHHH----HHHCSTTHHHHHHHH-HHHHHHHHHC-CGGGGGGHHHHT
T ss_pred HHHHHHHHHhCCcccCCCCCCCCCCcHHHHHHHHHHH----HHHHHhhhcHHHHHH-HHHHHHHHcC-HHHHHHHHHHHh
Confidence 458889999999999999 78999655544433333 333444444334454 5566777888 999999999999
Q ss_pred cCCc-------------eeEEEecCCCCCCCCCCceeEEEEe-CCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCCCCe
Q 014993 145 SGEH-------------VGALAMSEPNAGSDVVGMKCKADRV-DGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGI 210 (415)
Q Consensus 145 ~g~~-------------~~~~a~tep~~gsd~~~~~t~a~~~-~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~~~~ 210 (415)
+|+. ++|+++|||++|||+..++|+|+++ +|+|+|||+|.|+| ++.||+++|+|+++ .++
T Consensus 162 sge~~p~~~~~~~~~g~~~~~a~TEp~~GSDl~~~~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gi 235 (541)
T 3djl_A 162 SDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGL 235 (541)
T ss_dssp CSCCCCCSSCGGGSSSCCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEE
T ss_pred CCCcccccccccccccceeEEEeccCCcCCCcccceeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----Cce
Confidence 9998 7899999999999999999999999 78899999999999 99999999999985 389
Q ss_pred EEEEEecCCC-----CeeeccccccccCCCCCceeEEEeeeeeCCCCcccCCCCCCCcchHHHHHhhchHHHHHHhHHHH
Q 014993 211 TAFIIEKGMP-----GFSTAQKLDKLGMRGSDTCELVFENCFVPNENVLGQEGKGCNSFGVYVMMSGLDLERLVLAAGPL 285 (415)
Q Consensus 211 ~~~lV~~~~~-----Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~llg~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~ 285 (415)
++|+||++.| ||++.+.|+++|++++++++|+|+||+ +++||.++. |+.++...++.+|+.+++.++
T Consensus 236 s~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~v~fddv~---~~llG~~g~-----G~~~~~~~l~~~Rl~~aa~~~ 307 (541)
T 3djl_A 236 SCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGE-----GIRLILKMGGMTRFDCALGSH 307 (541)
T ss_dssp EEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEEEEEEEEE---EEEESSTTC-----HHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCCcCCeEEeeccccCCCcCCceeEEEEccce---eeeeecCCc-----hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 999999999999999999999999996 889999988 999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------chhhhHHHHHHHH
Q 014993 286 GIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVD------PKDCAGVILCAAE 359 (415)
Q Consensus 286 G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~------~~~~~~ak~~~~~ 359 (415)
|+++++++.+++|+++|++||+||+++|.+|++|++|.+++++++++++++++.+|.+.+. ...++++|+++++
T Consensus 308 G~a~~al~~a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~~~~~~aK~~ase 387 (541)
T 3djl_A 308 AMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICK 387 (541)
T ss_dssp HHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccCCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987532 2346789999999
Q ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 360 RATQVTLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 360 ~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
.+.++++.++|+|||.||+++++++|+|||++..+|++|+++|++..|+|.+++.
T Consensus 388 ~a~~~~~~a~q~~Gg~G~~~e~~l~r~~Rda~~~~i~eGt~ei~~~~i~r~l~~~ 442 (541)
T 3djl_A 388 RGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQ 442 (541)
T ss_dssp HHHHHHHHHHHHHGGGGGSTTSHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhCCeeecCCCcHHHHHHhhhhhheeCCcHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999998764
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=3e-52 Score=432.82 Aligned_cols=366 Identities=16% Similarity=0.197 Sum_probs=293.3
Q ss_pred HHHHHHHHHHHHHHhhccCcchhh-----hhccCCCCCcHHHHHHHHhcCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Q 014993 34 DTQLQFKESVGQFARENIAPRAAN-----IDQSNSFPQDVNLWKLMGNFNLHGITAPQEYGGLGLGYLYHCIAMEEISRA 108 (415)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~~~p~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~e~la~~ 108 (415)
++...+++++++|+.+. |.-.. +..+..+....+..+.|.+. | ++|||.+ ..+.. +.+++...
T Consensus 27 ~~~~~~r~~~~~~l~~~--p~~~~~~~~~~~~~e~~~~~~~~~~~l~~~-~------~~~~~~~--~~~~~-~~~~~~~~ 94 (661)
T 2ddh_A 27 PENTRRRREIENLILND--PDFQHEDYNFLTRSQRYEVAVKKSATMVKK-M------REYGISD--PEEIM-WFKNSVHR 94 (661)
T ss_dssp HHHHHHHHHHHHHHHTC--GGGCCSCGGGSCHHHHHHHHHHHHHHHHHH-H------HHTTCCC--HHHHH-HHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcC--cccccCCcCCCCHHHHHHHHHHHHHHHHHH-H------HHcCCCC--chHHH-HHHHHhcc
Confidence 45558899999998765 32110 00000111001223444443 2 6688766 33333 36776554
Q ss_pred cccchhHHhhhhhHHHHHHHhcCCHHHHHHHhHhhhcCCceeEEEecCCCCCCCCCCceeEEEEe--CCEEEEE-----e
Q 014993 109 SGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRV--DGGYIIN-----G 181 (415)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tep~~gsd~~~~~t~a~~~--~~g~~Ln-----G 181 (415)
+. +..+..|..++...|..+|+++|+++|+|++++|+.++|+++|||++|||+.+++|+|+++ +|||+|| |
T Consensus 95 ~~--~~~~~~h~~l~~~~i~~~Gt~eq~~~~L~~i~~Ge~~g~~a~TE~g~GSd~~~l~TtA~~d~~~~~~vLntP~~~G 172 (661)
T 2ddh_A 95 GH--PEPLDLHLGMFLPTLLHQATAEQQERFFMPAWNLEITGTYAQTEMGHGTHLRGLETTATYDPKTQEFILNSPTVTS 172 (661)
T ss_dssp TC--CCTTHHHHHTHHHHHC-CCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSSTT
T ss_pred ch--hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEeeccCCcCcCcccceeEEEEcCCCCeEEEcCCCCCe
Confidence 33 3344566556778889999999999999999999999999999999999999999999999 8899999 9
Q ss_pred EeecccC-CCCCCEEEEEEEeCCCCCCCCeEEEEEe-cC------CCCeeeccccccccCCCCCceeEEEeeeeeCCCCc
Q 014993 182 NKMWCTN-GPVAQTLVVYAKTDIKAGSKGITAFIIE-KG------MPGFSTAQKLDKLGMRGSDTCELVFENCFVPNENV 253 (415)
Q Consensus 182 ~k~~vs~-~~~ad~~~v~a~~~~~~~~~~~~~~lV~-~~------~~Gv~v~~~~~~~Gl~~~~~~~v~f~~v~Vp~~~l 253 (415)
+|.|+|| +..||+++|+|+++++++..|+++|+|| ++ .|||++.+.|+++|++++++++|.|+||+||++++
T Consensus 173 ~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~~k~Gl~g~~~~~v~Fd~VrVP~~~l 252 (661)
T 2ddh_A 173 IKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENM 252 (661)
T ss_dssp SEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCCSSCTTCCCEEEEESSEEEEGGGB
T ss_pred EEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCcccccCCCCcceEEEeccEEECHHHh
Confidence 9999999 8899999999998644345689999999 44 79999999999999999999999999999999999
Q ss_pred ccCC------CCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCC-------CCCcchHHHHHHH
Q 014993 254 LGQE------GKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGR-------PLGEFQFIQGKTA 320 (415)
Q Consensus 254 lg~~------~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~-------pi~~~q~vq~~la 320 (415)
||.. +.......+......+..+|+.+++.++|+++++++.+++|+++|+|||+ ||+++|.+|++|+
T Consensus 253 Lg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~~i~~~q~vq~rLa 332 (661)
T 2ddh_A 253 LMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLF 332 (661)
T ss_dssp CCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCSSTTSCCCBGGGSHHHHHHHH
T ss_pred cCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCCCCccccccccHHHHHHHH
Confidence 9864 22000001455667788999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-------CCC-----CchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHH
Q 014993 321 DMYTALQSSRSYVYSVARDCDN-------GKV-----DPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLR 388 (415)
Q Consensus 321 ~~~~~l~aar~~~~~aa~~~d~-------~~~-----~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~R 388 (415)
+|.+++++++.+++++++.+++ +.+ ....++++|.++++.+.++++.|+|+|||+||+.+++++++||
T Consensus 333 ~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~~~~~a~q~~GG~G~~~~~~l~r~~r 412 (661)
T 2ddh_A 333 PLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMACGGHGYSHSSGIPNIYV 412 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCcHHHHHH
Confidence 9999999999999999998863 222 1345789999999999999999999999999999999999999
Q ss_pred hhccCcccCChHHHHHHHHHHHHHh
Q 014993 389 DAKLYEIGAGTSEIRRMIIGRALLK 413 (415)
Q Consensus 389 da~~~~~~~G~~~~~~~~i~~~l~~ 413 (415)
|++...+++|++++++..+++.+++
T Consensus 413 da~~~~~~eG~~~vl~~~iar~lL~ 437 (661)
T 2ddh_A 413 TFTPACTFEGENTVMMLQTARFLMK 437 (661)
T ss_dssp HHGGGGTSSSCHHHHHHHHHHHHHH
T ss_pred hcceeeEecCchHHHHHHHHHHHHH
Confidence 9999999999999999999999876
No 38
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3.4e-41 Score=338.05 Aligned_cols=260 Identities=13% Similarity=0.148 Sum_probs=210.1
Q ss_pred HHHHhcCC--HHHHHHHhHhhhcCCceeEEEecCCCCC--------CCC-CCceeEEEEeCCEEEEEeEeecccCCCCCC
Q 014993 125 NQLVRHGS--PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDV-VGMKCKADRVDGGYIINGNKMWCTNGPVAQ 193 (415)
Q Consensus 125 ~~l~~~g~--~~q~~~~l~~l~~g~~~~~~a~tep~~g--------sd~-~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad 193 (415)
..+..+|+ ++||++|||++++|+.++|+++|||+.| ||. ..++ ++++++|||+|||+|.|+||++.||
T Consensus 118 ~~~~~~Gt~~~eqk~~~L~~l~~Ge~~~a~a~TEP~~~rs~~~~~gSD~~~~~~-~a~r~gdg~vlnG~K~~iT~a~~Ad 196 (490)
T 1u8v_A 118 EIDQKYGTNYHKNFTEYLKYIQENDLIVDGAMTDPKGDRGLAPSAQKDPDLFLR-IVEKREDGIVVRGAKAHQTGSINSH 196 (490)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTCCEEEECCCCCSCTTSCGGGCSSTTSSCE-EEEECSSEEEEEEEECSCTTCTTCS
T ss_pred hHHHHhCCCHHHHHHHHHHHHHhCCceeeeeeeCCCCCCcccccccCCcccceE-EEEEECCEEEEEeEEEEeeCCcccC
Confidence 34558999 9999999999999999999999999864 674 3444 8999999999999999999999999
Q ss_pred EEEEEEEeCCCC-CCCCeEEEEEecCCCCeeec---ccccc----------ccC-CC-CCceeEEEeeeeeCCCCcc--c
Q 014993 194 TLVVYAKTDIKA-GSKGITAFIIEKGMPGFSTA---QKLDK----------LGM-RG-SDTCELVFENCFVPNENVL--G 255 (415)
Q Consensus 194 ~~~v~a~~~~~~-~~~~~~~~lV~~~~~Gv~v~---~~~~~----------~Gl-~~-~~~~~v~f~~v~Vp~~~ll--g 255 (415)
+++|+++++.++ ...++++|+||+++|||++. +.+++ +|+ +. ..+++|+||||+||++++| |
T Consensus 197 ~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~r~~~~~~~v~FddV~VP~e~vl~~g 276 (490)
T 1u8v_A 197 EHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQ 276 (490)
T ss_dssp EEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSSSCCCCCEEEEEEEEEEEGGGEEEES
T ss_pred EEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCccccccCCceEEEEECceEeCHHHccCCC
Confidence 999999985322 23358899999999999994 34443 666 63 5678899999999999998 5
Q ss_pred CCCCCCCcchHHHHHhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 014993 256 QEGKGCNSFGVYVMMSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYS 335 (415)
Q Consensus 256 ~~~~~~~~~g~~~~~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~ 335 (415)
..+. ++......+.+.|+..+++++|.++.++..+...... +| |+++|.||++|++|.++++++|+++++
T Consensus 277 ~~~~-----g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~ 346 (490)
T 1u8v_A 277 EYDF-----AGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG--AQKASHVKDKLIEMTHLNETLYCCGIA 346 (490)
T ss_dssp CGGG-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555 7877777778888887776666666666655443322 43 899999999999999999999999999
Q ss_pred HHHHhhC---CC--CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhh-ccCcccC
Q 014993 336 VARDCDN---GK--VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDA-KLYEIGA 397 (415)
Q Consensus 336 aa~~~d~---~~--~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda-~~~~~~~ 397 (415)
+++.++. +. +....++++|+++++.+.++++.++|+|||.|++ +|++++|||. +...+.+
T Consensus 347 aa~~~d~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~er~~rd~~~~~~~~~ 412 (490)
T 1u8v_A 347 CSAEGYPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT--MPSEADFKSETVVGRDGE 412 (490)
T ss_dssp HHHTCEECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH--CCCHHHHTCCCBCSTTSC
T ss_pred HHHcccccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc--ChHHHHHhCchhccccch
Confidence 9999874 32 3456789999999999999999999999999998 5566666665 3333333
No 39
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=6.8e-41 Score=335.44 Aligned_cols=263 Identities=17% Similarity=0.221 Sum_probs=220.9
Q ss_pred HHHHHHHhHhhhcCCceeEEEecCCCCC--------CCCCCceeEE-EEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC
Q 014993 133 PAQKDKYLPKLISGEHVGALAMSEPNAG--------SDVVGMKCKA-DRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI 203 (415)
Q Consensus 133 ~~q~~~~l~~l~~g~~~~~~a~tep~~g--------sd~~~~~t~a-~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~ 203 (415)
++||++|||++++|+.++|+++|||+.| ||.. +.+++ ++++|||+|||+|.|+|| +.||+++|++++++
T Consensus 123 ~eqk~~~L~~l~~Ge~~~a~a~TEP~~grs~~~s~gsd~~-~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~ 200 (481)
T 2yyk_A 123 AENVRNYYRYLRDQDLATTHALTNPQVNRARPPSGQPDPY-IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILL 200 (481)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCCCCTTC----CCCSC-SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCC
T ss_pred HHHHHHHHHHHHcCCeEEEEeeECCCCCCCCCccccCCcc-cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCC
Confidence 6899999999999999999999999976 5654 55665 479999999999999999 99999999999864
Q ss_pred CC-CCCCeEEEEEecCCCCeeec--ccccc--------ccCCC-CCceeEEEeeeeeCCCCcc--cCCCCCCCcchHHHH
Q 014993 204 KA-GSKGITAFIIEKGMPGFSTA--QKLDK--------LGMRG-SDTCELVFENCFVPNENVL--GQEGKGCNSFGVYVM 269 (415)
Q Consensus 204 ~~-~~~~~~~~lV~~~~~Gv~v~--~~~~~--------~Gl~~-~~~~~v~f~~v~Vp~~~ll--g~~~~~~~~~g~~~~ 269 (415)
.+ ...++++|+||+++|||++. +.++. +|.+. .++++|+||||+||++++| |..+. ++...
T Consensus 201 ~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~r~~~~~~~v~FddV~VP~e~vl~~G~~~~-----g~~~~ 275 (481)
T 2yyk_A 201 QAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVEL-----CNNAY 275 (481)
T ss_dssp CTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTTTCCCCEEEEEEEEEEEEGGGEEEESCHHH-----HHHHH
T ss_pred CCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccccCCCCeEEEEEccEEECHHHccCCCCccH-----HHHHH
Confidence 32 23468999999999999994 33332 56664 6788999999999999998 55443 55444
Q ss_pred --HhhchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CC
Q 014993 270 --MSGLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN---GK 344 (415)
Q Consensus 270 --~~~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~---~~ 344 (415)
...+..+|+..++..+|.++.++..+..+++. +| |+++|.||++||+|.++++++|++++++++.+|. +.
T Consensus 276 ~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~ 350 (481)
T 2yyk_A 276 GATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADVYGHVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGL 350 (481)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSC
T ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 56778999999999999999999999888874 43 9999999999999999999999999999999874 32
Q ss_pred --CCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchHHHHHHhhc-------cCcccCChHHHHHHHHHHHH
Q 014993 345 --VDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYATGRLLRDAK-------LYEIGAGTSEIRRMIIGRAL 411 (415)
Q Consensus 345 --~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~~r~~Rda~-------~~~~~~G~~~~~~~~i~~~l 411 (415)
+....++++|+++++.+.++++.|+|+|||.+++ .|++++| |.+ .+... |++++++..|.|.+
T Consensus 351 ~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~--~p~e~~~-~~~i~~~l~~~l~~~-g~~~~~r~~i~rl~ 422 (481)
T 2yyk_A 351 LVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT--LPSEKDF-KGPLGPFLEKFLQGA-ALEAKERVALFRLA 422 (481)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC--CCCHHHH-HSTTHHHHHHHSCBT-TBCHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc--CccHHHh-ChhhhHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3456799999999999999999999999998887 7888888 873 33344 99999999998754
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=100.00 E-value=9.1e-36 Score=298.00 Aligned_cols=235 Identities=13% Similarity=0.147 Sum_probs=184.4
Q ss_pred HHHHHHHhHhhhcCCceeEEEecCCCC--------CCCCCCceeEEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCC-
Q 014993 133 PAQKDKYLPKLISGEHVGALAMSEPNA--------GSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDI- 203 (415)
Q Consensus 133 ~~q~~~~l~~l~~g~~~~~~a~tep~~--------gsd~~~~~t~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~- 203 (415)
.+|+++|||++++|+.++++++|||+. |||. .++++ ++++|||+|||+|.|+||+..||+++|++++++
T Consensus 132 ~eq~~~~L~~l~~Ge~~~a~AltEP~~~rs~~~~~GSD~-~~~~~-~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~~~ 209 (515)
T 3hwc_A 132 TQNIHNFLKLLREKDLNCPLNFVDPQTDRSSDAAQARSP-NLRIV-EKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPG 209 (515)
T ss_dssp HHHHHHHHHHHHHTTCCCCEECCCCCCCCCSCTTTSCCS-BCEEE-EECSSEEEEEEEEEEEESGGGCSEEEECCCCCTT
T ss_pred HHHHHHHHHHHHcCCcEEEEEeeCCCCCcccccccCCCc-ceEEE-EEECCEEEEEEEEEEECCccccCEEEEEEEecCC
Confidence 578999999999999999999999986 4777 55543 457899999999999999999999999999833
Q ss_pred CCCCCCeEEEEEecCCCCeeeccccccccC-----CC-----CCceeEEEeeeeeCCCCcc--cCCCCCCCcchHHHHHh
Q 014993 204 KAGSKGITAFIIEKGMPGFSTAQKLDKLGM-----RG-----SDTCELVFENCFVPNENVL--GQEGKGCNSFGVYVMMS 271 (415)
Q Consensus 204 ~~~~~~~~~~lV~~~~~Gv~v~~~~~~~Gl-----~~-----~~~~~v~f~~v~Vp~~~ll--g~~~~~~~~~g~~~~~~ 271 (415)
.+++. +++|+||+++|||++...+..+|. +. ..+++|+||||+||++++| |+.+. |+..+..
T Consensus 210 ~~~~~-~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~v~FddV~VP~e~vl~~Ge~g~-----g~~~~~~ 283 (515)
T 3hwc_A 210 IPGEQ-VIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEH-----AKLYPQR 283 (515)
T ss_dssp CCGGG-CEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEEEEEEEEEEEGGGEEEESCTTG-----GGTHHHH
T ss_pred CCCCe-EEEEEEECCCCCeEEeecccccCccccccccccccCCceEEEEECceEECHHHccCCCCccH-----HHHHHHH
Confidence 22333 999999999999999766766662 22 2378899999999999999 77776 6655533
Q ss_pred hchHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CC--CC
Q 014993 272 GLDLERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN---GK--VD 346 (415)
Q Consensus 272 ~~~~~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~---~~--~~ 346 (415)
.+...+....+..+|.+..++..+..++. .+| |++||.||++||||.++++++|++++++++..+. +. +.
T Consensus 284 ~~~~~~r~~~~~~~~~a~~~lG~A~~~~e---~~g--I~~fQ~Vq~kLAem~~~lEaaR~l~~~Aa~~~d~~~~G~~~p~ 358 (515)
T 3hwc_A 284 IFDWVHYHILIRQVLRAELIVGLAILITE---HIG--TSKLPTVSARVAKLVAFHLAMQAHLIASEETGFHTKGGRYKPN 358 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCC
Confidence 33333211123334444444444444333 233 9999999999999999999999999999999875 32 45
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccccccCc
Q 014993 347 PKDCAGVILCAAERATQVTLQAIQCLGGNGYVNE 380 (415)
Q Consensus 347 ~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~ 380 (415)
...++++|+++++.+.++++.++|+|||.+++..
T Consensus 359 ~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~P 392 (515)
T 3hwc_A 359 PLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMIP 392 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCC
Confidence 6679999999999999999999999999999853
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.97 E-value=8.6e-30 Score=255.23 Aligned_cols=236 Identities=12% Similarity=0.045 Sum_probs=191.9
Q ss_pred HHHHHHhHhhhcCCceeEEEecCCCCCC-----CCCCcee-EEEEeCCEEEEEeEeecccCCCCCCEEEEEEEeCCCCCC
Q 014993 134 AQKDKYLPKLISGEHVGALAMSEPNAGS-----DVVGMKC-KADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGS 207 (415)
Q Consensus 134 ~q~~~~l~~l~~g~~~~~~a~tep~~gs-----d~~~~~t-~a~~~~~g~~LnG~k~~vs~~~~ad~~~v~a~~~~~~~~ 207 (415)
+...+|+..+.++++..+.++++|...- ....+-. .+++++|||+|||.|.|+||++.||+++|++++++..+.
T Consensus 134 ~n~~~y~~~~~~~DL~~~~a~~dPk~dRs~~~~~q~d~~l~Vve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~ 213 (517)
T 4g5e_A 134 KNIVDFVNFAKKHDLNCAPQFVDPQMDRSNPDAQQRSPGLRVIEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPG 213 (517)
T ss_dssp HHHHHHHHHHHHHTCCEEEECCCCCC-----------CBCEEEEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCG
T ss_pred HHHHHHHHHHHhcCceeeeeeeCCCCCCCCCchhcCCCceEEEEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCc
Confidence 4567899999999999999999997421 1111222 357778999999999999999999999999998776566
Q ss_pred CCeEEEEEecCCCCeeecccccc---------ccCCCC-CceeEEEeeeeeCCCCcc--cCCCCCCCcchHHHHHhhchH
Q 014993 208 KGITAFIIEKGMPGFSTAQKLDK---------LGMRGS-DTCELVFENCFVPNENVL--GQEGKGCNSFGVYVMMSGLDL 275 (415)
Q Consensus 208 ~~~~~~lV~~~~~Gv~v~~~~~~---------~Gl~~~-~~~~v~f~~v~Vp~~~ll--g~~~~~~~~~g~~~~~~~~~~ 275 (415)
.+.++|+||.++|||++...... ++.++. ..+.|.||||+||+++++ |+.+. ++......+..
T Consensus 214 d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da~vvFDdV~VP~e~Vf~~Ge~~~-----~~~~~~~~~~~ 288 (517)
T 4g5e_A 214 DQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDGMTVFDNVFIPWSHVFHLGNPEH-----AKLYPQRVFDW 288 (517)
T ss_dssp GGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEEEEEEEEEEEEGGGEEEESCTTH-----HHHHHHHHHHH
T ss_pred cceEEEEEecCCCCeEEEecccccCCCccccccccccCCcceEEEecceeccHHHccccCChhH-----HHHHHHHHHHH
Confidence 67889999999999998533222 222222 246799999999999987 77766 77777788888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCchhh
Q 014993 276 ERLVLAAGPLGIMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNG-----KVDPKDC 350 (415)
Q Consensus 276 ~r~~~aa~~~G~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~-----~~~~~~~ 350 (415)
.+...++..+|.++.++..+..+++.. | |.+||+||++|+||.+.+|++|++++.++...... .+....+
T Consensus 289 ~~~~~~~~~~~~~~~~~g~a~~~ae~~---G--i~~fq~Vq~kLaEm~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a 363 (517)
T 4g5e_A 289 LHYHALIRQSVRAELMAGLAILITEHI---G--TNKIPAVQTRVAKLIGFHQAMLAHIVASEELGFHTPGGAYKPNILIY 363 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---T--CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTCCEECCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHH
Confidence 888888888999999999988888643 3 89999999999999999999999999888764432 2456788
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccccccC
Q 014993 351 AGVILCAAERATQVTLQAIQCLGGNGYVN 379 (415)
Q Consensus 351 ~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~ 379 (415)
+++|+++++...+++.+++|++||.|++-
T Consensus 364 ~~aK~~a~~~~~rv~~eaiqi~GG~g~~~ 392 (517)
T 4g5e_A 364 DFGRALYLENFSQMIYELVDLSGRSALIF 392 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 99999999999999999999999999983
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=95.64 E-value=0.068 Score=54.51 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCC-CchhhhHHHHHHHHHHHHH
Q 014993 287 IMQACLDVVLPYVRQREQFGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDN-GKV-DPKDCAGVILCAAERATQV 364 (415)
Q Consensus 287 ~a~~al~~a~~~~~~R~~~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~-~~~-~~~~~~~ak~~~~~~a~~~ 364 (415)
.+...+..+++++.+| +|+.|.+.|.+..+|+|+.+++.++.+.+.++.+.+.. +.+ ...+..++++||.+...++
T Consensus 466 ~~~~~~~~~~~~~~~~--~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (597)
T 3owa_A 466 NAKKIGLMVAGLAAQK--YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEI 543 (597)
T ss_dssp HHHHHHHHHHHHHHHH--HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433 67789999999999999999999999999999998875 554 4567889999999999999
Q ss_pred HHHHHHhhccccccCcchHHHHHHhhccCcccCChH-HHHHHHHHHHHHh
Q 014993 365 TLQAIQCLGGNGYVNEYATGRLLRDAKLYEIGAGTS-EIRRMIIGRALLK 413 (415)
Q Consensus 365 ~~~a~~~~Gg~g~~~~~~~~r~~Rda~~~~~~~G~~-~~~~~~i~~~l~~ 413 (415)
-..+.++. ..+.++..+..++...+-+.-+...| .-.+..|++.++.
T Consensus 544 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 591 (597)
T 3owa_A 544 EAHAKETL--IAVENGDMLRMMLSSLRKLTRHTPLNVIPKKREIAAKILE 591 (597)
T ss_dssp HHHHHHHH--HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhccchHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH
Confidence 99999999 66777777777777776666655544 4456788888765
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=84.43 E-value=9.9 Score=38.53 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=58.1
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCc-hhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 014993 305 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDP-KDCAGVILCAAERATQVTLQAIQCLGG 374 (415)
Q Consensus 305 ~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~-~~~~~ak~~~~~~a~~~~~~a~~~~Gg 374 (415)
.|..+.+.|.+..+|+++...+.++-+++.++.+.++.+.+.. .+..++++|+.+...++-..+.++..+
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 576 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSD 576 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678889999999999999999999999999988877665543 458889999999888888888775443
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=78.62 E-value=35 Score=34.13 Aligned_cols=100 Identities=18% Similarity=0.128 Sum_probs=72.9
Q ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhhhHHHHHHHHHHHHHHHHHHHhhccccccCcchH-
Q 014993 305 FGRPLGEFQFIQGKTADMYTALQSSRSYVYSVARDCDNGKVDPKDCAGVILCAAERATQVTLQAIQCLGGNGYVNEYAT- 383 (415)
Q Consensus 305 ~g~pi~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~ak~~~~~~a~~~~~~a~~~~Gg~g~~~~~~~- 383 (415)
+|+.+.+.|.+-.+++++.+.+..+++.+.++.+. .+. ...++++|+.+...++...+.+++- ++.++.|.
T Consensus 468 ~~~~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 539 (577)
T 2z1q_A 468 YGQGVEEEQEVLGAVADILIDAYAAESALLRARRL--GGL----APVLARIYLAQALDRAQAGALSVLP--RLVEGDEAR 539 (577)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT----HHHHHHHHHHHHHHHHHHHHHHHGG--GTCCTTTTH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc----HHHHHHHHHHHHHHHHHHHHHHHHH--HHHcCCchh
Confidence 35666677899999999999999999999888766 222 7889999999999999888888773 33444433
Q ss_pred --HHHHHhhccCcccCChHHHHHHHHHHHHHhc
Q 014993 384 --GRLLRDAKLYEIGAGTSEIRRMIIGRALLKQ 414 (415)
Q Consensus 384 --~r~~Rda~~~~~~~G~~~~~~~~i~~~l~~~ 414 (415)
-..+|.. ......+++-+...|++.++..
T Consensus 540 ~~~~~~~~~--~~~~~~~~~~~~~~ia~~~~~~ 570 (577)
T 2z1q_A 540 VVYSAARRL--TKREPGDLVALRRQAAEAVLEA 570 (577)
T ss_dssp HHHHHHHHH--TCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cccCCCChHHHHHHHHHHHHhc
Confidence 2333333 2344456777888999988763
Done!