BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014994
(415 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR 309
A +N KD+ GRT LH AA+ E++ L+SKGA + + SDG+T + + R
Sbjct: 93 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 258 SAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
A +N KD+ GRT LH AA+ E++ L+SKGA + SDG+T
Sbjct: 60 GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 105
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+ A +N D+ GRT LH AA+ E++ L+SKGA + SDG+T
Sbjct: 26 NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR 309
N KD+ GRT LH AA E++ LLSKGA + + SDG+T + + R
Sbjct: 97 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
N KD+ GRT LH AA E++ LLSKGA + SDG+T +
Sbjct: 64 NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 107
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
+ A N D+ GRT LH AA E++ LLSKGA + SDG+T +
Sbjct: 26 NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPL 74
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 250 FKEVLNM---DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVA 306
KEV+ + A +N KD+ GRT LH AA EV+ L+SKGA + + SDG+T +
Sbjct: 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Query: 307 ICR 309
+ R
Sbjct: 142 LAR 144
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 250 FKEVLNM---DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
KEV+ + A +N KD+ GRT LH AA EV+ L+SKGA + SDG+T
Sbjct: 49 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 105
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+ A +N D+ GRT LH AA EV+ L+SKGA + SDG+T
Sbjct: 26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 72
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
N KD+ G+T LH+AA EV+ LLS+GA + + SDG+T + + R
Sbjct: 97 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 262 NLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
N KD+ G+T LH+AA EV+ LLS+GA + SDG+T + +
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 110
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
+ A +N D+ G+T LH+AA EV+ LLS+GA + SDG+T + +
Sbjct: 26 NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 77
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL + A +N KD+ G T LH+AARR E++ LL GA + + S G T + + +
Sbjct: 64 EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAK 122
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N D+ G T LH+AA+R E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
A +N KD GRT LH+AAR EV+ LL GA + +G+T + + R
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
A +N KD GRT LH+AAR EV+ LL GA + +G+T + + R
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
A +N KD GRT LH+AAR EV+ LL GA
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
GRT LH+AAR EV+ LL GA + +G+T + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
A +N KD GRT LH+AAR EV+ LL GA + +G+T + + R
Sbjct: 26 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
A +N KD GRT LH+AAR EV+ LL GA
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
GRT LH+AAR EV+ LL GA + +G+T + + R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 44
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
+L + A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL A +N KD G T LH+AAR E++ LL GA + G+T + R
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIR 143
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 52 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 110
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
+L + A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL A +N KD G T LH+AAR E++ LL GA + G+T
Sbjct: 85 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 64 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 122
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
+L + A +N KD G T LH+AAR E++ LL GA + DG T + + R
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N KD G T LH+AAR E++ LL GA + G+TA I
Sbjct: 97 EVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDIS 153
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
+L + A +N KD G T LH+AAR E++ LL GA + G+TA I
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N KD G T LH+AA R E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL + A +N D G T LH+AA E++ LL GA + +G T
Sbjct: 64 EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGIT 115
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT 312
+L + A +N D G T LH+AA E++ LL GA + + G T + +
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 313 RRKDYIEASKQGQETN-KDRLCIDVLEREMRRNSM 346
+ K G + N KD I L R +
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHL 126
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D +G T LH+AA PE++ LL GA + +DG T
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWT 82
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N +DA G T LH+AA R E++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 247 PKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
P++ EVL A +N +D G T LH+AA E++ LL GA + + G T
Sbjct: 60 PEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLT 115
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 259 AGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
A +N + G T LH+AA+ E++ LL+KGA + + DG T + ++
Sbjct: 33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK 84
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 268 GRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
G T LH AA+ E + LLSKGA + + DG T + + +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK 51
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.8 bits (81), Expect = 0.046, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL A +N D+ GRT LH+AA E++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 35.4 bits (80), Expect = 0.056, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D G T LH+AA+R E++ LL GA + + S G+T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.8 bits (81), Expect = 0.049, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL A +N +D GRT LH+AA E++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D G T LH+AA+R E++ LL GA + G+T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.4 bits (80), Expect = 0.052, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D +G T LH+AA + E++ LL GA + +DG T
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGST 82
Score = 32.0 bits (71), Expect = 0.57, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
EVL + A +N D+ G T LH+AA R EV+ LL GA + +G T + + +
Sbjct: 64 EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANI 123
Query: 312 TRRKDYIEASKQGQETN 328
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTRR--KDYI 318
L+ K A G T LH AA N+P+ + LL A G+TA+ I R+ + ++ +
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278
Query: 319 EASKQG 324
E ++ G
Sbjct: 279 EQAQAG 284
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
+L + A + KD G T LH+AAR EV+ LL GA + G+TA I
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDI 78
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
+ L+ K A G T LH AA N+P+ + LL A G+TA+ I R+
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.0 bits (79), Expect = 0.076, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
+L + A + KD G T LH+AAR EV+ LL GA G+TA I
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI 96
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.7 bits (78), Expect = 0.092, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL A +N D GRT LH+AA E++ LL GA + G+TA I
Sbjct: 64 EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDI 119
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D G T LH+AA+R E++ LL GA + + G+T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 264 KDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDG 301
KDA G T LH+AA++ EV+ LLS G DG
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 250 FKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICR 309
E+L L+ + G + LH+AAR N + +V LS+ + + +G+T +
Sbjct: 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Query: 310 RMTRRKDYIEASKQGQET 327
++ ++ SK Q++
Sbjct: 219 LNSQVWSALQMSKALQDS 236
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL + A +N D G T LH+AA E++ LL GA + +DG T + + +
Sbjct: 64 EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAK 122
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA+ E++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL + A +N GRT LH+AA + E++ LL GA + G+TA I
Sbjct: 64 EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D G T LH+AA E++ LL GA + T + G+T
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRT 82
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL A +N +D G T LH+AA R E++ LL GA + G+TA I
Sbjct: 64 EVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 248 KVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
K E+L A +N K+ T LHVAA R +VM L GA+ + S GQTA+
Sbjct: 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
EVL+ A +N D+ G+T LH AA + LLS G+ S + G TA +
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA 323
Query: 312 ------------TRRKDY--IEASKQG 324
T DY +EASK G
Sbjct: 324 VQQILSESTPMRTSDVDYRLLEASKAG 350
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N KD G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N D G T LH+AA+ E++ LL GA + + G T
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGAT 82
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL A +N D G T LH+AA E++ LL GA + +G T
Sbjct: 64 EVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFT 115
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N D+ G T LH+AA+ E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
EVL A ++ D G T LH+AA E++ LL GA + SDG T + + +
Sbjct: 64 EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAK 122
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL + A +N DA G T LH+ A E++ LL GA + G+TA I
Sbjct: 64 EVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDI 119
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N +D G T LH+AA + E++ LL GA + + G+T
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGET 82
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N +DA G T LH+AA E++ LL GA + G T
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMT 82
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL + A +N D G T LH+AA+R E++ LL GA + + G T
Sbjct: 64 EVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGST 115
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRR 310
+L + A +N +D G T LH+AAR E++ LL GA + G T + + +
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAK 89
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 28/56 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
EVL + A +N DA G T LH+AA E+ LL GA + G+TA I
Sbjct: 64 EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D +G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL +A +N D G T LH+AA R E++ LL GA + G T
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYT 115
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMT 312
+L + A N D GRT LH+AA E++ LL GA + ++G T + + +
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 313 RRKDYIEASKQGQETN-KDRLCI 334
+ K G + N KD I
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGI 102
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N KDA G T L++AA E++ LL GA + G+TA I
Sbjct: 85 EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL + A +N D G T LH+AA E++ LL GA + + G T
Sbjct: 52 EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+N KD G + LH+AA E++ LL KGA+ + +G T
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+N KD G + LH+AA E++ LL KGA+ + +G T
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR 313
++A NL G T LH+AAR E ++ LL K A + T G T + + + +
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL + A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N +D G+T LH+AA + E++ LL GA + G T
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDT 82
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
EVL A +N D G T LH+AA E++ LL GA + T + G T
Sbjct: 64 EVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFT 115
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N DA G T LH+AA E++ LL GA + G T
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGST 82
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
EVL A +N D G T LH+AA E++ LL GA + + G T + + M
Sbjct: 64 EVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 312 TRRKDYIEASKQGQETN 328
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+N KD G + LH+AA E++ LL KGA + +G T
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT 108
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+N KD G + LH+AA E++ LL KGA + +G T
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 261 LNLKDARGRTVLHVAARRNEPEVMVTLLSKGAR 293
LN ++ G T LH AA + +++ LL+KGAR
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 253 VLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQT 303
+L + A +N DA G T LH+AA E++ LL GA + G T
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGST 82
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRM 311
EVL A +N D G T LH+AA E++ LL GA + + G T + + M
Sbjct: 64 EVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123
Query: 312 TRRKDYIEASKQGQETN 328
+ K G + N
Sbjct: 124 GHLEIVEVLLKHGADVN 140
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 258 SAGLNLKDARGR-TVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR 313
A L+ +D RG T LH+AA PEV+ L+ GA G TA+ + R + +
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 156
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA E++ LL GA + G+TA I
Sbjct: 97 EVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 258 SAGLNLKDARGR-TVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAICRRMTR 313
A L+ +D RG T LH+AA PEV+ L+ GA G TA+ + R + +
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK 155
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGA 292
EVL + A +N D+ G T LH+AA E++ LL GA
Sbjct: 56 EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 252 EVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAIC 308
EVL A +N D G T LH+AA + E++ LL GA + + G TA I
Sbjct: 89 EVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDIS 145
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 246 SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
SP V E+L A N++DA G + +H AAR + + L+ GA + S G +
Sbjct: 53 SPAVALELLK-QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 111
Query: 306 AICRR 310
+ R
Sbjct: 112 HLAIR 116
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAVAI 307
+ A +N D G LH AA ++ L+S+GA S+G T + I
Sbjct: 95 NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 291
D A LN ++ +T LH+A N+PE+ LL G
Sbjct: 34 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 246 SPKVFKEVLNMDSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSDGQTAV 305
SP V E+L A N++DA G + +H AAR + + L+ GA + S G +
Sbjct: 55 SPAVALELLK-QGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPI 113
Query: 306 AICRR 310
+ R
Sbjct: 114 HLAIR 118
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 257 DSAGLNLKDARGRTVLHVAARRNEPEVMVTLLSKG 291
D A LN ++ +T LH+A N+PE+ LL G
Sbjct: 31 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 65
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 260 GLNLKDARGRTVLHVAARRNEPEVMVTLLSKGARASETTSD 300
G+N+ G + LHVAA +++ LL GA A +D
Sbjct: 78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNAD 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,492,602
Number of Sequences: 62578
Number of extensions: 399162
Number of successful extensions: 1010
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 153
length of query: 415
length of database: 14,973,337
effective HSP length: 101
effective length of query: 314
effective length of database: 8,652,959
effective search space: 2717029126
effective search space used: 2717029126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)