Query 014995
Match_columns 415
No_of_seqs 300 out of 1616
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:05:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014995.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014995hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.6E-64 9.9E-69 515.5 33.6 333 58-415 23-429 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 7.1E-48 1.5E-52 392.6 31.4 281 127-415 42-397 (398)
3 cd05489 xylanase_inhibitor_I_l 100.0 7.7E-45 1.7E-49 365.5 25.9 259 138-412 2-361 (362)
4 cd05472 cnd41_like Chloroplast 100.0 2.3E-44 5E-49 353.0 24.3 233 131-414 1-299 (299)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.5E-43 7.6E-48 349.0 25.5 274 130-415 2-326 (326)
6 cd05478 pepsin_A Pepsin A, asp 100.0 2.1E-42 4.4E-47 342.1 25.5 250 125-411 4-317 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 5.5E-42 1.2E-46 340.1 26.1 246 127-411 2-325 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 7.1E-41 1.5E-45 331.0 24.3 244 132-411 1-316 (316)
9 cd05488 Proteinase_A_fungi Fun 100.0 1.9E-40 4.1E-45 328.6 27.1 245 126-411 5-320 (320)
10 cd05477 gastricsin Gastricsins 100.0 1.4E-40 3.1E-45 329.0 25.6 245 130-412 2-318 (318)
11 PTZ00165 aspartyl protease; Pr 100.0 1.9E-40 4.1E-45 343.5 26.9 258 120-415 109-449 (482)
12 cd05485 Cathepsin_D_like Cathe 100.0 3.5E-40 7.5E-45 328.0 25.6 249 124-411 4-329 (329)
13 cd05487 renin_like Renin stimu 100.0 6.5E-40 1.4E-44 325.5 26.0 249 126-412 3-326 (326)
14 PTZ00147 plasmepsin-1; Provisi 100.0 7.8E-40 1.7E-44 336.6 27.3 249 125-413 133-450 (453)
15 cd05475 nucellin_like Nucellin 100.0 3.7E-40 8E-45 319.6 21.6 240 130-414 1-273 (273)
16 cd06098 phytepsin Phytepsin, a 100.0 1.1E-39 2.5E-44 322.6 25.2 240 125-411 4-317 (317)
17 cd05473 beta_secretase_like Be 100.0 4.8E-39 1E-43 324.0 23.2 254 130-415 2-348 (364)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.5E-38 3.3E-43 326.5 26.8 251 126-413 133-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.2E-37 4.7E-42 298.8 19.9 229 131-414 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 9.1E-36 2E-40 289.3 22.3 210 132-411 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 1.5E-34 3.3E-39 284.0 19.1 244 131-412 1-317 (317)
22 PF14543 TAXi_N: Xylanase inhi 100.0 5.1E-35 1.1E-39 262.9 13.9 159 132-301 1-164 (164)
23 cd05474 SAP_like SAPs, pepsin- 100.0 7.6E-34 1.7E-38 277.3 22.8 215 131-412 2-295 (295)
24 cd05471 pepsin_like Pepsin-lik 100.0 5.9E-33 1.3E-37 268.0 21.8 211 132-411 1-283 (283)
25 cd05470 pepsin_retropepsin_lik 99.9 6.4E-24 1.4E-28 177.2 12.2 105 134-267 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.7 2.3E-17 5.1E-22 147.7 11.1 105 306-411 49-161 (161)
27 cd05483 retropepsin_like_bacte 97.7 0.00011 2.4E-09 58.8 7.4 93 130-268 1-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 94.9 0.23 5.1E-06 42.2 9.3 95 128-268 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 94.6 0.22 4.8E-06 38.9 8.0 89 134-268 1-89 (90)
30 cd05484 retropepsin_like_LTR_2 90.8 0.27 5.9E-06 39.2 3.4 29 132-162 1-29 (91)
31 cd05479 RP_DDI RP_DDI; retrope 89.2 2.7 5.8E-05 35.7 8.5 30 130-161 15-44 (124)
32 PF13975 gag-asp_proteas: gag- 82.8 2 4.4E-05 32.7 4.1 32 130-163 7-38 (72)
33 PF00077 RVP: Retroviral aspar 82.3 2 4.2E-05 34.6 4.0 28 133-162 7-34 (100)
34 cd05482 HIV_retropepsin_like R 71.9 4.4 9.4E-05 32.4 3.1 25 135-161 2-26 (87)
35 cd06095 RP_RTVL_H_like Retrope 61.0 10 0.00022 29.8 3.3 25 135-161 2-26 (86)
36 COG3577 Predicted aspartyl pro 47.6 69 0.0015 29.9 6.7 73 128-236 102-174 (215)
37 PF07438 DUF1514: Protein of u 39.8 24 0.00052 26.4 2.1 20 1-20 1-20 (66)
38 PF12384 Peptidase_A2B: Ty3 tr 33.3 55 0.0012 29.5 3.7 29 133-161 34-62 (177)
39 PF09668 Asp_protease: Asparty 31.3 78 0.0017 27.1 4.2 30 130-161 23-52 (124)
40 PF07172 GRP: Glycine rich pro 27.0 45 0.00098 27.1 1.9 7 5-11 3-9 (95)
41 cd05481 retropepsin_like_LTR_1 21.1 75 0.0016 25.4 2.2 17 143-159 9-25 (93)
42 PF08139 LPAM_1: Prokaryotic m 20.7 1.3E+02 0.0027 18.3 2.5 14 3-16 6-19 (25)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.6e-64 Score=515.51 Aligned_cols=333 Identities=29% Similarity=0.548 Sum_probs=270.3
Q ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCHHHHHHHhHHHHHhhhcccccCCCCccccCCcceeeeeecCCCCC-ceEEEEE
Q 014995 58 DKASLEVVSKYGPCSRLNQGISTHAPSLEEILRQDQQRLHLKNSRRLRKPFPEFLKRTEAFTFPANINDTVA-DEYYIVV 136 (415)
Q Consensus 58 ~~~~l~l~hr~~p~sp~~~~~~~~~~~~~~~~~~d~~R~~~l~~rr~~~~~~~~~~~~~~~~~p~~~~~~~~-~~Y~v~v 136 (415)
++++++|+||++||+|++....+..+.+.++++||++|++++.+ +... ..|+..+...+ ++|+++|
T Consensus 23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~------------~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDAS------------PNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-cccc------------CCccccCcccCCccEEEEE
Confidence 57999999999999998654444456788899999999988866 4221 12333333344 8999999
Q ss_pred EeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCC-CCCceeEec
Q 014995 137 AIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNS-KECPFNIQY 215 (415)
Q Consensus 137 ~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~-~~c~y~i~Y 215 (415)
.||||||++.|+|||||+++||||.+|..|+.|..+.|||++|+||+.++|+++.|+.+.. ...|.. +.|.|.+.|
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~---~~~c~~~~~c~y~i~Y 166 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN---QASCSDENTCTYSYSY 166 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCC---CCCCCCCCCCeeEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987652 224753 569999999
Q ss_pred CCCCeEeEEEEEEEEEecccCCC-ceeeecCeEEEEEEcCCCCCC-CCCcccccCCCCceeecccccce---EEEEcCCC
Q 014995 216 ADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKS-GASGIMGLDRSPVSIITRTNTSY---FSYCLPSP 290 (415)
Q Consensus 216 gdgs~~~G~l~~Dtltl~~~~~~-~~v~~~~~~FGc~~~~~g~f~-~~~GIlGLG~~~~Sl~sQl~~~~---FSycL~~~ 290 (415)
+||+.+.|++++|+|+|++..++ ..++ ++.|||++.+.|.|. ..+||||||++++|+++|+.... |||||++.
T Consensus 167 gdgs~~~G~l~~Dtltlg~~~~~~~~v~--~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~ 244 (431)
T PLN03146 167 GDGSFTKGNLAVETLTIGSTSGRPVSFP--GIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPL 244 (431)
T ss_pred CCCCceeeEEEEEEEEeccCCCCcceeC--CEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCC
Confidence 99998999999999999874321 1355 999999999888774 58999999999999999987533 99999763
Q ss_pred C---CCceEEEECCC-------------------------------------------------------cCh-------
Q 014995 291 Y---GSTGYITFGKT-------------------------------------------------------DTV------- 305 (415)
Q Consensus 291 ~---~~~G~L~fG~t-------------------------------------------------------GTv------- 305 (415)
. ...|+|+||+. ||.
T Consensus 245 ~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~ 324 (431)
T PLN03146 245 SSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSD 324 (431)
T ss_pred CCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHH
Confidence 2 24789999971 121
Q ss_pred --hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEecCCCC
Q 014995 306 --NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDP 383 (415)
Q Consensus 306 --~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~~~~~ 383 (415)
.+++++|+++|...+..... ..++.||+... ...+|+|+|+|+ |++++|++++|++....+..|+++++. .
T Consensus 325 ~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~--~~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~~~~Cl~~~~~---~ 397 (431)
T PLN03146 325 FYSELESAVEEAIGGERVSDPQ-GLLSLCYSSTS--DIKLPIITAHFT-GADVKLQPLNTFVKVSEDLVCFAMIPT---S 397 (431)
T ss_pred HHHHHHHHHHHHhccccCCCCC-CCCCccccCCC--CCCCCeEEEEEC-CCeeecCcceeEEEcCCCcEEEEEecC---C
Confidence 45677777777543333332 45789998543 357899999995 899999999999987667789999865 2
Q ss_pred CceeechhhhcceEEEEECCCCEEEEeeCCCC
Q 014995 384 NSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 415 (415)
Q Consensus 384 ~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C~ 415 (415)
..+|||+.|||++||+||++++||||++.+|+
T Consensus 398 ~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~ 429 (431)
T PLN03146 398 SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT 429 (431)
T ss_pred CceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence 36999999999999999999999999999995
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-48 Score=392.58 Aligned_cols=281 Identities=33% Similarity=0.605 Sum_probs=225.3
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCC-cccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCC
Q 014995 127 TVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI-HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCN 205 (415)
Q Consensus 127 ~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~-~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~ 205 (415)
...++|+++|.||||||+|.|++||||+++||+|.+|. .|+.+.++.|||++||||+.+.|.++.|..... ..|.
T Consensus 42 ~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~----~~~~ 117 (398)
T KOG1339|consen 42 YSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ----SCSP 117 (398)
T ss_pred ccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCcccccccc----Cccc
Confidence 33489999999999999999999999999999999999 799877777999999999999999999998862 2233
Q ss_pred CCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC-C--CCCCcccccCCCCceeecccccce
Q 014995 206 SKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSIITRTNTSY 282 (415)
Q Consensus 206 ~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~-f--~~~~GIlGLG~~~~Sl~sQl~~~~ 282 (415)
++.|.|.+.|+||+.++|++++|+|+|++.+ ...++ ++.|||++.+.|. . .+.+||||||++++|+.+|+...+
T Consensus 118 ~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~--~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~ 194 (398)
T KOG1339|consen 118 NSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVP--NQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFY 194 (398)
T ss_pred CCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccc--cEEEEeeecCccccccccccceEeecCCCCccceeeccccc
Confidence 5889999999998889999999999999852 01245 8999999999763 2 358999999999999999999876
Q ss_pred -----EEEEcCCCCC---CceEEEECCC----------------------------------------------------
Q 014995 283 -----FSYCLPSPYG---STGYITFGKT---------------------------------------------------- 302 (415)
Q Consensus 283 -----FSycL~~~~~---~~G~L~fG~t---------------------------------------------------- 302 (415)
|||||.+... ..|.|+||+.
T Consensus 195 ~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 195 NAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIID 274 (398)
T ss_pred CCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEE
Confidence 9999998753 4799999982
Q ss_pred -cCh-----hhHHHHHHHHHhhcc-ccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeE-EE
Q 014995 303 -DTV-----NTLRSAFHKRMKKYK-KAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQV-CL 374 (415)
Q Consensus 303 -GTv-----~~l~~af~~~~~~~~-~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~-Cl 374 (415)
||. ..+.+++.+++...- ........+..||...... ..+|.|+|+|.+|+.|.|++++|++....... |+
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl 353 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCL 353 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccceEEEECCCCCcee
Confidence 111 223333333333210 0111113456899876544 66899999997799999999999998754444 99
Q ss_pred EEEecCCCCCceeechhhhcceEEEEECC-CCEEEEee--CCCC
Q 014995 375 GFATYPPDPNSITLGNVQQRGHEVHYDVA-GRRLGFGP--GNCS 415 (415)
Q Consensus 375 a~~~~~~~~~~~IlG~~~~~~~~vvfD~~-~~~iGFa~--~~C~ 415 (415)
++.........||||++|||+++++||.. ++||||++ ..|+
T Consensus 354 ~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 354 AFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 87765432258999999999999999999 99999999 7884
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.7e-45 Score=365.50 Aligned_cols=259 Identities=25% Similarity=0.469 Sum_probs=204.9
Q ss_pred eCCCCcE-EEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCC--------CCCCCCCCC
Q 014995 138 IGEPKQY-VSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESF--------PFGNCNSKE 208 (415)
Q Consensus 138 iGTP~q~-~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~--------~~~~C~~~~ 208 (415)
+|||-.+ +.|+|||||+++||||.+ .+|+||+.++|+++.|+.+..+. +...|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5888777 999999999999999985 35889999999999998765331 113676677
Q ss_pred CceeEe-cCCCCeEeEEEEEEEEEecccCCCc----eeeecCeEEEEEEcCC--CCCCCCCcccccCCCCceeecccccc
Q 014995 209 CPFNIQ-YADGSGSGGFWATDRITIQEANSNG----YFTRYPFLLGCINNSS--GDKSGASGIMGLDRSPVSIITRTNTS 281 (415)
Q Consensus 209 c~y~i~-Ygdgs~~~G~l~~Dtltl~~~~~~~----~v~~~~~~FGc~~~~~--g~f~~~~GIlGLG~~~~Sl~sQl~~~ 281 (415)
|.|.+. |++|+.+.|++++|+|+|+..++.. +++ ++.|||++++. +.+...+||||||++++|+++|+..+
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~--~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIF--NFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeC--CEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 999765 8899999999999999998654322 356 99999999864 44556999999999999999999763
Q ss_pred -----eEEEEcCCCCCCceEEEECCC------------------------------------------------------
Q 014995 282 -----YFSYCLPSPYGSTGYITFGKT------------------------------------------------------ 302 (415)
Q Consensus 282 -----~FSycL~~~~~~~G~L~fG~t------------------------------------------------------ 302 (415)
.|||||++..+..|.|+||+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 299999976555799999830
Q ss_pred -----------cCh---------hhHHHHHHHHHhhccccCCCCCCCcceeeccCC----cccccceEEEEEcC-CeEEE
Q 014995 303 -----------DTV---------NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAY----ETVVVPKIAIHFLG-GVDLE 357 (415)
Q Consensus 303 -----------GTv---------~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~----~~~~~P~i~f~F~g-Ga~~~ 357 (415)
||. .+++++|.++|..++........+|.||+.... ....+|.|+|+|+| |++|+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 121 556667777766544333321334899986532 24679999999987 89999
Q ss_pred ecCCCeEEEeCCCeEEEEEEecCCC-CCceeechhhhcceEEEEECCCCEEEEeeC
Q 014995 358 LDVRGTLVVASVSQVCLGFATYPPD-PNSITLGNVQQRGHEVHYDVAGRRLGFGPG 412 (415)
Q Consensus 358 l~~~~~l~~~~~~~~Cla~~~~~~~-~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~ 412 (415)
|+++||+++...+..|++|++.+.. ...||||++|||++||+||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999997667789999976432 457999999999999999999999999974
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2.3e-44 Score=352.99 Aligned_cols=233 Identities=45% Similarity=0.879 Sum_probs=190.7
Q ss_pred eEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCc
Q 014995 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (415)
Q Consensus 131 ~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (415)
+|+++|.||||||++.|++||||+++||+|.+| |.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c---------------------------------------------~~ 35 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC---------------------------------------------CL 35 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC---------------------------------------------Ce
Confidence 699999999999999999999999999998765 45
Q ss_pred eeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCCCCCCcccccCCCCceeecccccc---eEEEEc
Q 014995 211 FNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRTNTS---YFSYCL 287 (415)
Q Consensus 211 y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG~~~~Sl~sQl~~~---~FSycL 287 (415)
|.+.|+||+.++|++++|+|+|++.. .++ ++.|||+....+.+...+||||||+..+|+++|+..+ .||+||
T Consensus 36 ~~i~Yg~Gs~~~G~~~~D~v~ig~~~---~~~--~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L 110 (299)
T cd05472 36 YQVSYGDGSYTTGDLATDTLTLGSSD---VVP--GFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCL 110 (299)
T ss_pred eeeEeCCCceEEEEEEEEEEEeCCCC---ccC--CEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEEc
Confidence 99999999988999999999998762 267 9999999988887778999999999999999998764 399999
Q ss_pred CCCC-CCceEEEECCC----------------------------------------------------cCh---------
Q 014995 288 PSPY-GSTGYITFGKT----------------------------------------------------DTV--------- 305 (415)
Q Consensus 288 ~~~~-~~~G~L~fG~t----------------------------------------------------GTv--------- 305 (415)
++.+ ...|+|+||+. ||.
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 8754 45799999982 222
Q ss_pred hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEe-CCCeEEEEEEecCCCCC
Q 014995 306 NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA-SVSQVCLGFATYPPDPN 384 (415)
Q Consensus 306 ~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~-~~~~~Cla~~~~~~~~~ 384 (415)
.++.+++.+.+...+...+. ..++.||+.++.....+|+|+|+|++|++++|++++|++.. ..+..|++|........
T Consensus 191 ~~l~~~l~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~ 269 (299)
T cd05472 191 AALRDAFRAAMAAYPRAPGF-SILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGG 269 (299)
T ss_pred HHHHHHHHHHhccCCCCCCC-CCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCC
Confidence 23333344333322222232 45668999887666789999999976899999999999843 45678999886543346
Q ss_pred ceeechhhhcceEEEEECCCCEEEEeeCCC
Q 014995 385 SITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414 (415)
Q Consensus 385 ~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C 414 (415)
.+|||+.|||++|+|||++++|||||+.+|
T Consensus 270 ~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 270 LSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 799999999999999999999999999999
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.5e-43 Score=349.02 Aligned_cols=274 Identities=25% Similarity=0.437 Sum_probs=198.6
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
+.|+++|.||||+|++.|+|||||+++||+|.+|..|..+..+.|||++|+|++.++|++..|... ..|.++.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~------~~~~~~~~ 75 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYC------LSCLNNKC 75 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCcccccc------CcCCCCcC
Confidence 579999999999999999999999999999999999988888999999999999999999999532 26777789
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCc-eeeecCeEEEEEEcCCCCC--CCCCcccccCCCCceee--------ccc
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNG-YFTRYPFLLGCINNSSGDK--SGASGIMGLDRSPVSII--------TRT 278 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~-~v~~~~~~FGc~~~~~g~f--~~~~GIlGLG~~~~Sl~--------sQl 278 (415)
.|.+.|+||+.+.|.+++|+|+|++..... .....++.|||+....+.| ...+||||||+.+.+-. .|.
T Consensus 76 ~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~ 155 (326)
T cd06096 76 EYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKR 155 (326)
T ss_pred cEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhc
Confidence 999999999889999999999998754110 0011257899999887765 36899999999875311 222
Q ss_pred cc----ceEEEEcCCCCCCceEEEECCCcC----------------h--hhHHHH--HHHHHhhcccc---------CCC
Q 014995 279 NT----SYFSYCLPSPYGSTGYITFGKTDT----------------V--NTLRSA--FHKRMKKYKKA---------KGL 325 (415)
Q Consensus 279 ~~----~~FSycL~~~~~~~G~L~fG~tGT----------------v--~~l~~a--f~~~~~~~~~~---------~~~ 325 (415)
.. ..||+||++. .|+|+||+... + ..+... +.-.+..+... ...
T Consensus 156 ~~~~~~~~FS~~l~~~---~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~ 232 (326)
T cd06096 156 PKLKKDKIFSICLSED---GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGL 232 (326)
T ss_pred ccccCCceEEEEEcCC---CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCC
Confidence 21 2399999863 59999998421 1 000000 00000000000 000
Q ss_pred CCCCcceeeccCC-------cccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEecCCCCCceeechhhhcceEE
Q 014995 326 EDLLDTCYDLSAY-------ETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEV 398 (415)
Q Consensus 326 ~~~~d~Cy~~~~~-------~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~~~~~~~~IlG~~~~~~~~v 398 (415)
..++|+--.+... -...+|+|+|+|++|++++++|++|++.......|+++... .+.+|||++|||++|+
T Consensus 233 ~aivDSGTs~~~lp~~~~~~l~~~~P~i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~---~~~~ILG~~flr~~y~ 309 (326)
T cd06096 233 GMLVDSGSTLSHFPEDLYNKINNFFPTITIIFENNLKIDWKPSSYLYKKESFWCKGGEKSV---SNKPILGASFFKNKQI 309 (326)
T ss_pred CEEEeCCCCcccCCHHHHHHHHhhcCcEEEEEcCCcEEEECHHHhccccCCceEEEEEecC---CCceEEChHHhcCcEE
Confidence 0112211000000 01134999999976899999999999886555455666543 3579999999999999
Q ss_pred EEECCCCEEEEeeCCCC
Q 014995 399 HYDVAGRRLGFGPGNCS 415 (415)
Q Consensus 399 vfD~~~~~iGFa~~~C~ 415 (415)
+||++++|||||+++|.
T Consensus 310 vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 310 IFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEECcCCEEeeEcCCCC
Confidence 99999999999999995
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.1e-42 Score=342.12 Aligned_cols=250 Identities=22% Similarity=0.331 Sum_probs=196.2
Q ss_pred CCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCC
Q 014995 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNC 204 (415)
Q Consensus 125 ~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C 204 (415)
.+..+.+|+++|.||||+|++.|+|||||+++||+|..|..|..+..+.|||++|+||+...
T Consensus 4 ~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~------------------ 65 (317)
T cd05478 4 TNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG------------------ 65 (317)
T ss_pred ccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC------------------
Confidence 45556999999999999999999999999999999999986333456899999999998853
Q ss_pred CCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCC---CCCCcccccCCCCce------ee
Q 014995 205 NSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGLDRSPVS------II 275 (415)
Q Consensus 205 ~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f---~~~~GIlGLG~~~~S------l~ 275 (415)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+.+ ...+||||||+..++ ++
T Consensus 66 ----~~~~~~yg~gs-~~G~~~~D~v~ig~~~----i~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~ 134 (317)
T cd05478 66 ----QPLSIQYGTGS-MTGILGYDTVQVGGIS----DT--NQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVF 134 (317)
T ss_pred ----cEEEEEECCce-EEEEEeeeEEEECCEE----EC--CEEEEEEEecCccccccccccceeeeccchhcccCCCCHH
Confidence 78999999998 7999999999998765 77 99999999877654 258999999987653 44
Q ss_pred cccccc------eEEEEcCCCCCCceEEEECCC----------------------------------------------c
Q 014995 276 TRTNTS------YFSYCLPSPYGSTGYITFGKT----------------------------------------------D 303 (415)
Q Consensus 276 sQl~~~------~FSycL~~~~~~~G~L~fG~t----------------------------------------------G 303 (415)
.|+..+ .||+||.+.....|+|+|||. |
T Consensus 135 ~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTG 214 (317)
T cd05478 135 DNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTG 214 (317)
T ss_pred HHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCC
Confidence 554432 299999986556799999982 2
Q ss_pred Ch--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEE-EEEecC
Q 014995 304 TV--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCL-GFATYP 380 (415)
Q Consensus 304 Tv--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cl-a~~~~~ 380 (415)
|. ....+.+.+.++.+... .....+|.++|.....+|.|+|+| +|++++|++++|++.. ...|+ +|++.+
T Consensus 215 ts~~~lp~~~~~~l~~~~~~~----~~~~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~--~~~C~~~~~~~~ 287 (317)
T cd05478 215 TSLLVGPSSDIANIQSDIGAS----QNQNGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD--QGSCTSGFQSMG 287 (317)
T ss_pred chhhhCCHHHHHHHHHHhCCc----cccCCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC--CCEEeEEEEeCC
Confidence 22 11122333333322211 112346777887666789999999 6899999999999875 56898 677653
Q ss_pred CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 381 PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 381 ~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
....||||+.|||++|++||++++|||||+
T Consensus 288 -~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 -LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred -CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 346799999999999999999999999996
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=5.5e-42 Score=340.10 Aligned_cols=246 Identities=25% Similarity=0.405 Sum_probs=191.9
Q ss_pred CCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCC----cccCCCCCCCCCCCCCccccccCCCccccccccCCCCC
Q 014995 127 TVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (415)
Q Consensus 127 ~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~ 202 (415)
+.+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+..
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~--~~~y~~~~SsT~~~~----------------- 62 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWL--HHKYNSSKSSTYVKN----------------- 62 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccC--cCcCCcccCcceeeC-----------------
Confidence 34589999999999999999999999999999999997 3654 478999999999863
Q ss_pred CCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CC--CCCCcccccCCCCceee----
Q 014995 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSII---- 275 (415)
Q Consensus 203 ~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f--~~~~GIlGLG~~~~Sl~---- 275 (415)
+ |.|.+.|+||+ +.|++++|+|+|++.. ++ ++.|||++...+ .| ...+||||||++..|..
T Consensus 63 ~-----~~~~i~Yg~G~-~~G~~~~D~v~~g~~~----~~--~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~ 130 (325)
T cd05490 63 G-----TEFAIQYGSGS-LSGYLSQDTVSIGGLQ----VE--GQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTP 130 (325)
T ss_pred C-----cEEEEEECCcE-EEEEEeeeEEEECCEE----Ec--CEEEEEEeeccCCcccceeeeEEEecCCccccccCCCC
Confidence 2 78999999997 7999999999998765 77 999999998766 34 35899999999876643
Q ss_pred --cccccc------eEEEEcCCCCC--CceEEEECCC-------------------------------------------
Q 014995 276 --TRTNTS------YFSYCLPSPYG--STGYITFGKT------------------------------------------- 302 (415)
Q Consensus 276 --sQl~~~------~FSycL~~~~~--~~G~L~fG~t------------------------------------------- 302 (415)
.|+..+ .||+||++... ..|+|+|||.
T Consensus 131 ~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~ai 210 (325)
T cd05490 131 VFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAI 210 (325)
T ss_pred HHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEE
Confidence 233322 29999986432 4699999982
Q ss_pred ---cCh-----hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeC--CCeE
Q 014995 303 ---DTV-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS--VSQV 372 (415)
Q Consensus 303 ---GTv-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~--~~~~ 372 (415)
||. ....+++.+++... +. .+..|.++|.....+|.|+|+| +|++++|++++|+++.. ....
T Consensus 211 iDSGTt~~~~p~~~~~~l~~~~~~~---~~----~~~~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~ 282 (325)
T cd05490 211 VDTGTSLITGPVEEVRALQKAIGAV---PL----IQGEYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTI 282 (325)
T ss_pred ECCCCccccCCHHHHHHHHHHhCCc---cc----cCCCEEecccccccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCE
Confidence 232 22334444444322 11 1235677787666789999999 78999999999998753 3457
Q ss_pred EE-EEEecC---CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 373 CL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 373 Cl-a~~~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
|+ +|+... .....||||++|||++|+|||++++|||||+
T Consensus 283 C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 283 CLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 98 677532 2345799999999999999999999999986
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.1e-41 Score=330.99 Aligned_cols=244 Identities=25% Similarity=0.398 Sum_probs=187.9
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 132 Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+... |
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~--~~~y~~~~SsT~~~~~----------------------~ 56 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK--HNRFQPSESSTYVSNG----------------------E 56 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc--cceECCCCCcccccCC----------------------c
Confidence 8999999999999999999999999999999974 754 4789999999998753 7
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CC--CCCCcccccCCCCcee----------ec
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSI----------IT 276 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f--~~~~GIlGLG~~~~Sl----------~s 276 (415)
.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||+....+ .| ...+||||||++.++. .+
T Consensus 57 ~~~i~Yg~g~-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~ 129 (316)
T cd05486 57 AFSIQYGTGS-LTGIIGIDQVTVEGIT----VQ--NQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMA 129 (316)
T ss_pred EEEEEeCCcE-EEEEeeecEEEECCEE----Ec--CEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHh
Confidence 8999999997 7999999999998755 77 999999987765 34 3689999999987653 23
Q ss_pred ccccc--eEEEEcCCCC--CCceEEEECCC----------------------------------------------cCh-
Q 014995 277 RTNTS--YFSYCLPSPY--GSTGYITFGKT----------------------------------------------DTV- 305 (415)
Q Consensus 277 Ql~~~--~FSycL~~~~--~~~G~L~fG~t----------------------------------------------GTv- 305 (415)
|.... .||+||.+.+ ...|.|+|||. ||.
T Consensus 130 qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~ 209 (316)
T cd05486 130 QNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSL 209 (316)
T ss_pred cCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcch
Confidence 33222 2999998643 24799999983 222
Q ss_pred hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEe--CCCeEEE-EEEecC--
Q 014995 306 NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA--SVSQVCL-GFATYP-- 380 (415)
Q Consensus 306 ~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~--~~~~~Cl-a~~~~~-- 380 (415)
..+.....+++.+...+. ..+.+|.++|.....+|+|+|+| +|++++|++++|++.. +....|+ +|+...
T Consensus 210 ~~lP~~~~~~l~~~~~~~----~~~~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~ 284 (316)
T cd05486 210 ITGPSGDIKQLQNYIGAT----ATDGEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIP 284 (316)
T ss_pred hhcCHHHHHHHHHHhCCc----ccCCcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCCC
Confidence 111122222222211111 12345777887666799999999 6899999999999875 3456897 787642
Q ss_pred -CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 381 -PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 381 -~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
.....||||+.|||++|+|||.+++|||||+
T Consensus 285 ~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 285 PPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 2245799999999999999999999999996
No 9
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.9e-40 Score=328.60 Aligned_cols=245 Identities=23% Similarity=0.386 Sum_probs=194.0
Q ss_pred CCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCccccccccCCCCCC
Q 014995 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGN 203 (415)
Q Consensus 126 ~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~ 203 (415)
+..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |.. .+.|||++|+||+...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~--~~~y~~~~Sst~~~~~----------------- 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL--HSKYDSSASSTYKANG----------------- 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC--cceECCCCCcceeeCC-----------------
Confidence 4456899999999999999999999999999999999974 864 4799999999988632
Q ss_pred CCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC-C--CCCCcccccCCCCceeecc---
Q 014995 204 CNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSIITR--- 277 (415)
Q Consensus 204 C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~-f--~~~~GIlGLG~~~~Sl~sQ--- 277 (415)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...|. | ...+||||||++..+...+
T Consensus 66 -----~~~~~~y~~g~-~~G~~~~D~v~ig~~~----~~--~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~ 133 (320)
T cd05488 66 -----TEFKIQYGSGS-LEGFVSQDTLSIGDLT----IK--KQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPP 133 (320)
T ss_pred -----CEEEEEECCce-EEEEEEEeEEEECCEE----EC--CEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCH
Confidence 78999999997 7999999999998765 67 9999999887664 3 3689999999998765432
Q ss_pred -------ccc--ceEEEEcCCCCCCceEEEECCC---------------------------------------------c
Q 014995 278 -------TNT--SYFSYCLPSPYGSTGYITFGKT---------------------------------------------D 303 (415)
Q Consensus 278 -------l~~--~~FSycL~~~~~~~G~L~fG~t---------------------------------------------G 303 (415)
... ..||+||.+.....|.|+|||. |
T Consensus 134 ~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSG 213 (320)
T cd05488 134 FYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTG 213 (320)
T ss_pred HHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCC
Confidence 111 2299999986556799999983 2
Q ss_pred Ch-----hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEE-EEE
Q 014995 304 TV-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCL-GFA 377 (415)
Q Consensus 304 Tv-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cl-a~~ 377 (415)
|. ..+.+++.+++.. . .....+|.++|.....+|.|+|+| +|++++|++++|+++. ...|+ .|.
T Consensus 214 tt~~~lp~~~~~~l~~~~~~----~---~~~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~--~g~C~~~~~ 283 (320)
T cd05488 214 TSLIALPSDLAEMLNAEIGA----K---KSWNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV--SGSCISAFT 283 (320)
T ss_pred cccccCCHHHHHHHHHHhCC----c---cccCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC--CCeEEEEEE
Confidence 32 3344444444421 1 123456778887667799999999 6899999999999864 34698 666
Q ss_pred ecC---CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 378 TYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 378 ~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
... .....||||+.|||++|++||.+++|||||+
T Consensus 284 ~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 284 GMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 532 1234799999999999999999999999986
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.4e-40 Score=329.04 Aligned_cols=245 Identities=23% Similarity=0.377 Sum_probs=191.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~ 207 (415)
..|+++|.||||+|++.|+|||||+++||+|..|.. |.. .+.|||++|+||+...
T Consensus 2 ~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~--~~~f~~~~SsT~~~~~--------------------- 58 (318)
T cd05477 2 MSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN--HTKFNPSQSSTYSTNG--------------------- 58 (318)
T ss_pred cEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc--cCCCCcccCCCceECC---------------------
Confidence 579999999999999999999999999999999985 754 5899999999998742
Q ss_pred CCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC-C--CCCCcccccCCCCc------eeeccc
Q 014995 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPV------SIITRT 278 (415)
Q Consensus 208 ~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~-f--~~~~GIlGLG~~~~------Sl~sQl 278 (415)
|.|++.|+||+ +.|.+++|+|+|++.. ++ ++.|||++...+. | ...+||||||+... ++++|+
T Consensus 59 -~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~----i~--~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L 130 (318)
T cd05477 59 -ETFSLQYGSGS-LTGIFGYDTVTVQGII----IT--NQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGM 130 (318)
T ss_pred -cEEEEEECCcE-EEEEEEeeEEEECCEE----Ec--CEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHH
Confidence 88999999997 6999999999998754 67 9999999987653 3 35799999998643 455566
Q ss_pred ccc------eEEEEcCCCC-CCceEEEECCC-----------------------------------------------cC
Q 014995 279 NTS------YFSYCLPSPY-GSTGYITFGKT-----------------------------------------------DT 304 (415)
Q Consensus 279 ~~~------~FSycL~~~~-~~~G~L~fG~t-----------------------------------------------GT 304 (415)
..+ .||+||++.. ...|.|+|||. ||
T Consensus 131 ~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGt 210 (318)
T cd05477 131 MQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGT 210 (318)
T ss_pred HhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCC
Confidence 543 2999998753 24699999982 22
Q ss_pred h--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEE-EEEecC-
Q 014995 305 V--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCL-GFATYP- 380 (415)
Q Consensus 305 v--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cl-a~~~~~- 380 (415)
. ....+.+.+.++.+.... ....+|.++|.....+|.|+|+| +|+++.|++++|++.. ...|+ +|++..
T Consensus 211 t~~~lP~~~~~~l~~~~~~~~----~~~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~ 283 (318)
T cd05477 211 SLLTAPQQVMSTLMQSIGAQQ----DQYGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYILQN--NGYCTVGIEPTYL 283 (318)
T ss_pred ccEECCHHHHHHHHHHhCCcc----ccCCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEecC--CCeEEEEEEeccc
Confidence 2 111222333232222111 12346788888767789999999 6899999999999875 45796 887542
Q ss_pred ---CCCCceeechhhhcceEEEEECCCCEEEEeeC
Q 014995 381 ---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 412 (415)
Q Consensus 381 ---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~ 412 (415)
.+...+|||+.|||++|++||++++|||||++
T Consensus 284 ~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 284 PSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 12347999999999999999999999999985
No 11
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.9e-40 Score=343.52 Aligned_cols=258 Identities=19% Similarity=0.325 Sum_probs=192.9
Q ss_pred eeeecCCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCcccccccc
Q 014995 120 FPANINDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRE 197 (415)
Q Consensus 120 ~p~~~~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~ 197 (415)
.+..+.++.+.+|+++|+||||||+|.|++||||+++||+|..|.. |. .++.|||++||||+++.+..
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~--~~~~yd~s~SSTy~~~~~~~-------- 178 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCA--PHRKFDPKKSSTYTKLKLGD-------- 178 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccc--ccCCCCccccCCcEecCCCC--------
Confidence 4556667777999999999999999999999999999999999985 64 46899999999999853211
Q ss_pred CCCCCCCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CCC--CCCcccccCCCCcee
Q 014995 198 SFPFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DKS--GASGIMGLDRSPVSI 274 (415)
Q Consensus 198 ~~~~~~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f~--~~~GIlGLG~~~~Sl 274 (415)
....+.+.||+|+ ..|.+++|+|+|++.. ++ ++.|||++...+ .|. ..|||||||++.++.
T Consensus 179 ---------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~----i~--~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~ 242 (482)
T PTZ00165 179 ---------ESAETYIQYGTGE-CVLALGKDTVKIGGLK----VK--HQSIGLAIEESLHPFADLPFDGLVGLGFPDKDF 242 (482)
T ss_pred ---------ccceEEEEeCCCc-EEEEEEEEEEEECCEE----Ec--cEEEEEEEeccccccccccccceeecCCCcccc
Confidence 0124679999997 6799999999998765 77 999999998765 343 689999999987532
Q ss_pred ---------ecccccc------eEEEEcCCCCCCceEEEECCC-------------------------------------
Q 014995 275 ---------ITRTNTS------YFSYCLPSPYGSTGYITFGKT------------------------------------- 302 (415)
Q Consensus 275 ---------~sQl~~~------~FSycL~~~~~~~G~L~fG~t------------------------------------- 302 (415)
+.|+..+ .||+||++....+|.|+|||.
T Consensus 243 ~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~ 322 (482)
T PTZ00165 243 KESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLG 322 (482)
T ss_pred cccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEee
Confidence 2333322 299999876556799999983
Q ss_pred ------------cCh--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcC--C--eEEEecCCCeE
Q 014995 303 ------------DTV--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLG--G--VDLELDVRGTL 364 (415)
Q Consensus 303 ------------GTv--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~g--G--a~~~l~~~~~l 364 (415)
||. ....+.+.+..+.+.. ...|. ....+|+|+|+|.| | ++++|++++|+
T Consensus 323 ~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------~~~C~-----~~~~lP~itf~f~g~~g~~v~~~l~p~dYi 390 (482)
T PTZ00165 323 FCDRKCKAAIDTGSSLITGPSSVINPLLEKIPL-------EEDCS-----NKDSLPRISFVLEDVNGRKIKFDMDPEDYV 390 (482)
T ss_pred ecCCceEEEEcCCCccEeCCHHHHHHHHHHcCC-------ccccc-----ccccCCceEEEECCCCCceEEEEEchHHee
Confidence 121 1111122222211111 12343 34568999999953 2 38999999999
Q ss_pred EEe----CCCeEEE-EEEecCC---CCCceeechhhhcceEEEEECCCCEEEEeeCCCC
Q 014995 365 VVA----SVSQVCL-GFATYPP---DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 415 (415)
Q Consensus 365 ~~~----~~~~~Cl-a~~~~~~---~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C~ 415 (415)
++. .....|+ +|++.+. .+..||||++|||++|+|||.+++|||||+++|.
T Consensus 391 ~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~ 449 (482)
T PTZ00165 391 IEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHD 449 (482)
T ss_pred eecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccC
Confidence 874 2356896 8886531 2357999999999999999999999999999884
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.5e-40 Score=328.02 Aligned_cols=249 Identities=24% Similarity=0.433 Sum_probs=194.7
Q ss_pred cCCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCC----cccCCCCCCCCCCCCCccccccCCCccccccccCC
Q 014995 124 INDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI----HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESF 199 (415)
Q Consensus 124 ~~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~----~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~ 199 (415)
+.+..+.+|+++|.||||+|++.|++||||+++||+|..|. .|.. .+.|||++|+|++...
T Consensus 4 ~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~--~~~y~~~~Sst~~~~~------------- 68 (329)
T cd05485 4 LSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLL--HNKYDSTKSSTYKKNG------------- 68 (329)
T ss_pred ceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccC--CCeECCcCCCCeEECC-------------
Confidence 44556699999999999999999999999999999999997 3643 4789999999998753
Q ss_pred CCCCCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC-C--CCCCcccccCCCCcee--
Q 014995 200 PFGNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD-K--SGASGIMGLDRSPVSI-- 274 (415)
Q Consensus 200 ~~~~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~-f--~~~~GIlGLG~~~~Sl-- 274 (415)
|.|.+.|++|+ +.|.+++|+++|++.. ++ ++.|||+.+..+. | ...+||||||++..|.
T Consensus 69 ---------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 132 (329)
T cd05485 69 ---------TEFAIQYGSGS-LSGFLSTDTVSVGGVS----VK--GQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDG 132 (329)
T ss_pred ---------eEEEEEECCce-EEEEEecCcEEECCEE----EC--CEEEEEEEecCCccccccccceEEEcCCccccccC
Confidence 78999999997 7999999999998765 77 9999999887663 4 3579999999987764
Q ss_pred --------eccccc--ceEEEEcCCCCC--CceEEEECCC----------------------------------------
Q 014995 275 --------ITRTNT--SYFSYCLPSPYG--STGYITFGKT---------------------------------------- 302 (415)
Q Consensus 275 --------~sQl~~--~~FSycL~~~~~--~~G~L~fG~t---------------------------------------- 302 (415)
.+|... ..||+||++..+ ..|+|+|||.
T Consensus 133 ~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~ 212 (329)
T cd05485 133 VVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQ 212 (329)
T ss_pred CCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcE
Confidence 233222 229999986543 4699999982
Q ss_pred -----cCh-----hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeC--CC
Q 014995 303 -----DTV-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS--VS 370 (415)
Q Consensus 303 -----GTv-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~--~~ 370 (415)
||. ..+.+++.+++.. .. ....+|.++|.....+|+|+|+| ||+++.|++++|+++.. ..
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~----~~---~~~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~ 284 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGA----KP---IIGGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQ 284 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCC----cc---ccCCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEEecCCCC
Confidence 232 2233334433321 11 12356888888767789999999 78999999999998863 24
Q ss_pred eEEE-EEEecC---CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 371 QVCL-GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 371 ~~Cl-a~~~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
..|+ +|+... .....+|||+.|||++|+|||++++|||||+
T Consensus 285 ~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 285 TICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5798 788532 2235799999999999999999999999984
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=6.5e-40 Score=325.53 Aligned_cols=249 Identities=23% Similarity=0.402 Sum_probs=192.7
Q ss_pred CCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc----ccCCCCCCCCCCCCCccccccCCCccccccccCCCC
Q 014995 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH----CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPF 201 (415)
Q Consensus 126 ~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~----C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~ 201 (415)
+..+..|+++|.||||+|++.|+|||||+++||+|..|.. |. ..+.|||++|+||+...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~--~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACV--THNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhc--ccCcCCCCCCeeeeECC---------------
Confidence 3445899999999999999999999999999999888864 54 35799999999998742
Q ss_pred CCCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CC--CCCCcccccCCCCce-----
Q 014995 202 GNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVS----- 273 (415)
Q Consensus 202 ~~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f--~~~~GIlGLG~~~~S----- 273 (415)
|.|++.|++|+ +.|.+++|+|+|++.. + ++.|||.....+ .| ...+||||||++..+
T Consensus 66 -------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~----~---~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 130 (326)
T cd05487 66 -------TEFTIHYASGT-VKGFLSQDIVTVGGIP----V---TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVT 130 (326)
T ss_pred -------EEEEEEeCCce-EEEEEeeeEEEECCEE----e---eEEEEEEEeccCCccceeecceEEecCChhhcccCCC
Confidence 88999999997 8999999999998754 4 477999987643 22 368999999998765
Q ss_pred -----eecccccc--eEEEEcCCCC--CCceEEEECCC------------------------------------------
Q 014995 274 -----IITRTNTS--YFSYCLPSPY--GSTGYITFGKT------------------------------------------ 302 (415)
Q Consensus 274 -----l~sQl~~~--~FSycL~~~~--~~~G~L~fG~t------------------------------------------ 302 (415)
|.+|.... .||+||.+.+ ...|.|+|||.
T Consensus 131 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~a 210 (326)
T cd05487 131 PVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTA 210 (326)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEE
Confidence 45554333 2999998754 35799999992
Q ss_pred ----cCh--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeC--CCeEEE
Q 014995 303 ----DTV--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS--VSQVCL 374 (415)
Q Consensus 303 ----GTv--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~--~~~~Cl 374 (415)
||. ....+.+.+.++.+.... . ...|.++|.....+|.|+|+| +|++++|++++|+++.. ....|+
T Consensus 211 iiDSGts~~~lP~~~~~~l~~~~~~~~---~--~~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~ 284 (326)
T cd05487 211 VVDTGASFISGPTSSISKLMEALGAKE---R--LGDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCT 284 (326)
T ss_pred EECCCccchhCcHHHHHHHHHHhCCcc---c--CCCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEE
Confidence 222 222334444444332111 1 345777787767789999999 78999999999998753 256796
Q ss_pred -EEEecC---CCCCceeechhhhcceEEEEECCCCEEEEeeC
Q 014995 375 -GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 412 (415)
Q Consensus 375 -a~~~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~ 412 (415)
+|+... .....||||+.|||++|++||++++|||||++
T Consensus 285 ~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 285 VAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 888642 12357999999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.8e-40 Score=336.56 Aligned_cols=249 Identities=22% Similarity=0.348 Sum_probs=189.2
Q ss_pred CCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCccccccccCCCCC
Q 014995 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFG 202 (415)
Q Consensus 125 ~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~ 202 (415)
.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|.. |. .++.|||++|+||+...
T Consensus 133 ~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~--~~~~yd~s~SsT~~~~~---------------- 194 (453)
T PTZ00147 133 KDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCE--TKNLYDSSKSKTYEKDG---------------- 194 (453)
T ss_pred cccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCccccc--CCCccCCccCcceEECC----------------
Confidence 34455899999999999999999999999999999999985 65 45899999999998753
Q ss_pred CCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC---C--CCCCcccccCCCCceee--
Q 014995 203 NCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD---K--SGASGIMGLDRSPVSII-- 275 (415)
Q Consensus 203 ~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~---f--~~~~GIlGLG~~~~Sl~-- 275 (415)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ..|+|+.+..+. + ...|||||||++++|..
T Consensus 195 ------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~----v~---~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~ 260 (453)
T PTZ00147 195 ------TKVEMNYVSGT-VSGFFSKDLVTIGNLS----VP---YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSV 260 (453)
T ss_pred ------CEEEEEeCCCC-EEEEEEEEEEEECCEE----EE---EEEEEEEeccCcccccccccccceecccCCccccccC
Confidence 78999999997 8999999999998765 55 479998876552 2 25899999999876542
Q ss_pred ----cccc----cce--EEEEcCCCCCCceEEEECCC------------------------------------------c
Q 014995 276 ----TRTN----TSY--FSYCLPSPYGSTGYITFGKT------------------------------------------D 303 (415)
Q Consensus 276 ----sQl~----~~~--FSycL~~~~~~~G~L~fG~t------------------------------------------G 303 (415)
.|+. ... ||+||++.+...|.|+|||. |
T Consensus 261 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSG 340 (453)
T PTZ00147 261 DPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSG 340 (453)
T ss_pred CCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEEEEECCEecCceeEEECCC
Confidence 2332 222 99999876556799999993 3
Q ss_pred Ch-----hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEe--CCCeEEE-E
Q 014995 304 TV-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA--SVSQVCL-G 375 (415)
Q Consensus 304 Tv-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~--~~~~~Cl-a 375 (415)
|. ....+++.+++.... .+. ...|..+|.. ..+|+|+|+| +|++++|+|++|+.+. .....|+ +
T Consensus 341 Tsli~lP~~~~~ai~~~l~~~~-~~~-----~~~y~~~C~~-~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~ 412 (453)
T PTZ00147 341 TSVITVPTEFLNKFVESLDVFK-VPF-----LPLYVTTCNN-TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLN 412 (453)
T ss_pred CchhcCCHHHHHHHHHHhCCee-cCC-----CCeEEEeCCC-CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEE
Confidence 33 223333333332111 011 1123344543 4589999999 6899999999999764 2345797 7
Q ss_pred EEecCCCCCceeechhhhcceEEEEECCCCEEEEeeCC
Q 014995 376 FATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 413 (415)
Q Consensus 376 ~~~~~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~ 413 (415)
|++.+...+.||||++|||++|+|||++++|||||+++
T Consensus 413 i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 413 IIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 88764334579999999999999999999999999875
No 15
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.7e-40 Score=319.58 Aligned_cols=240 Identities=28% Similarity=0.546 Sum_probs=176.5
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeec-CCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQC-KPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKE 208 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c-~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~ 208 (415)
++|+++|.||||+|++.|++||||+++||+| .+|..| .
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-----------------------------------------~ 39 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-----------------------------------------Q 39 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-----------------------------------------c
Confidence 5799999999999999999999999999999 477555 0
Q ss_pred CceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCC----CCCCcccccCCCCceeecccccc---
Q 014995 209 CPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK----SGASGIMGLDRSPVSIITRTNTS--- 281 (415)
Q Consensus 209 c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f----~~~~GIlGLG~~~~Sl~sQl~~~--- 281 (415)
|.|.+.|+|++.+.|.+++|+|+|+..++...++ ++.|||++.+.+.+ ...+||||||+++.|+++|+..+
T Consensus 40 c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~--~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i 117 (273)
T cd05475 40 CDYEIEYADGGSSMGVLVTDIFSLKLTNGSRAKP--RIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGII 117 (273)
T ss_pred CccEeEeCCCCceEEEEEEEEEEEeecCCCcccC--CEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCc
Confidence 8899999998889999999999997543222355 99999998876532 26899999999999999998764
Q ss_pred --eEEEEcCCCCCCceEEEECCC----cCh--hhHHH-----HHHHHHhhcccc------CCCCCCCcceeecc-CCccc
Q 014995 282 --YFSYCLPSPYGSTGYITFGKT----DTV--NTLRS-----AFHKRMKKYKKA------KGLEDLLDTCYDLS-AYETV 341 (415)
Q Consensus 282 --~FSycL~~~~~~~G~L~fG~t----GTv--~~l~~-----af~~~~~~~~~~------~~~~~~~d~Cy~~~-~~~~~ 341 (415)
.||+||++. ..|.|+||+. |.+ ..+.. .+.-.|..+... .....++|+--.+. -....
T Consensus 118 ~~~Fs~~l~~~--~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~ 195 (273)
T cd05475 118 KNVIGHCLSSN--GGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQA 195 (273)
T ss_pred CceEEEEccCC--CCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCcc
Confidence 299999873 4699999963 333 11111 111011111100 00001222211110 00112
Q ss_pred ccceEEEEEcCC---eEEEecCCCeEEEeCCCeEEEEEEecCC--CCCceeechhhhcceEEEEECCCCEEEEeeCCC
Q 014995 342 VVPKIAIHFLGG---VDLELDVRGTLVVASVSQVCLGFATYPP--DPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414 (415)
Q Consensus 342 ~~P~i~f~F~gG---a~~~l~~~~~l~~~~~~~~Cla~~~~~~--~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C 414 (415)
.+|+|+|+|+++ ++++|++++|++....+..|+++..... ....||||+.|||++|++||++++||||++++|
T Consensus 196 y~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 196 YFKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ccccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 389999999654 7999999999988666678998875432 235799999999999999999999999999999
No 16
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-39 Score=322.64 Aligned_cols=240 Identities=23% Similarity=0.419 Sum_probs=184.6
Q ss_pred CCCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCC---cccCCCCCCCCCCCCCccccccCCCccccccccCCCC
Q 014995 125 NDTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCI---HCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPF 201 (415)
Q Consensus 125 ~~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~---~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~ 201 (415)
.+..+.+|+++|.||||+|++.|+|||||+++||+|.+|. .|.. ++.|||++|+||+...
T Consensus 4 ~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~--~~~y~~~~SsT~~~~~--------------- 66 (317)
T cd06098 4 KNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF--HSKYKSSKSSTYKKNG--------------- 66 (317)
T ss_pred cccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc--cCcCCcccCCCcccCC---------------
Confidence 3455689999999999999999999999999999999996 4874 4789999999998742
Q ss_pred CCCCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CC--CCCCcccccCCCCcee----
Q 014995 202 GNCNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSI---- 274 (415)
Q Consensus 202 ~~C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f--~~~~GIlGLG~~~~Sl---- 274 (415)
+.+.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+ .| ...+||||||+...+.
T Consensus 67 -------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~----v~--~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 132 (317)
T cd06098 67 -------TSASIQYGTGS-ISGFFSQDSVTVGDLV----VK--NQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAV 132 (317)
T ss_pred -------CEEEEEcCCce-EEEEEEeeEEEECCEE----EC--CEEEEEEEecCCccccccccceeccccccchhhcCCC
Confidence 57899999997 7899999999998765 77 999999987655 23 3689999999987654
Q ss_pred ------eccccc--ceEEEEcCCCC--CCceEEEECCC------cCh---------------------------------
Q 014995 275 ------ITRTNT--SYFSYCLPSPY--GSTGYITFGKT------DTV--------------------------------- 305 (415)
Q Consensus 275 ------~sQl~~--~~FSycL~~~~--~~~G~L~fG~t------GTv--------------------------------- 305 (415)
.+|... ..||+||.+.. ...|.|+|||. |.+
T Consensus 133 ~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~ 212 (317)
T cd06098 133 PVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCA 212 (317)
T ss_pred CHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcE
Confidence 233222 23999998643 25799999983 211
Q ss_pred ---------hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeC--CCeEEE
Q 014995 306 ---------NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS--VSQVCL 374 (415)
Q Consensus 306 ---------~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~--~~~~Cl 374 (415)
..+..++.+++. +.++|.....+|+|+|+| +|+.++|++++|+++.. ....|+
T Consensus 213 aivDTGTs~~~lP~~~~~~i~---------------~~~~C~~~~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~ 276 (317)
T cd06098 213 AIADSGTSLLAGPTTIVTQIN---------------SAVDCNSLSSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCI 276 (317)
T ss_pred EEEecCCcceeCCHHHHHhhh---------------ccCCccccccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEe
Confidence 001111111110 234455445689999999 78999999999998753 245897
Q ss_pred -EEEecC---CCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 375 -GFATYP---PDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 375 -a~~~~~---~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
+|+... .....||||+.|||++|+|||++++|||||+
T Consensus 277 ~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 277 SGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred ceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 777542 1235799999999999999999999999985
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.8e-39 Score=324.03 Aligned_cols=254 Identities=24% Similarity=0.311 Sum_probs=181.2
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
.+|+++|.||||+|++.|+|||||+++||+|.+|..| ++.|||++|+||+... |
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~----~~~f~~~~SsT~~~~~----------------------~ 55 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI----HTYFHRELSSTYRDLG----------------------K 55 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc----cccCCchhCcCcccCC----------------------c
Confidence 4799999999999999999999999999999988433 4689999999999863 7
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCC-C--CCCcccccCCCCc------------ee
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK-S--GASGIMGLDRSPV------------SI 274 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f-~--~~~GIlGLG~~~~------------Sl 274 (415)
.|++.|+||+ +.|.+++|+|+|++.. +..+ .+.|++.....+.| . ..+||||||++.+ ++
T Consensus 56 ~~~i~Yg~Gs-~~G~~~~D~v~ig~~~-~~~~---~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l 130 (364)
T cd05473 56 GVTVPYTQGS-WEGELGTDLVSIPKGP-NVTF---RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSL 130 (364)
T ss_pred eEEEEECcce-EEEEEEEEEEEECCCC-ccce---EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHH
Confidence 8999999997 6899999999998532 1011 23466776666544 2 5799999999876 45
Q ss_pred ecccccce-EEEEcCC---------CCCCceEEEECCC------------------------------------------
Q 014995 275 ITRTNTSY-FSYCLPS---------PYGSTGYITFGKT------------------------------------------ 302 (415)
Q Consensus 275 ~sQl~~~~-FSycL~~---------~~~~~G~L~fG~t------------------------------------------ 302 (415)
++|...+. ||++|.. .....|.|+|||.
T Consensus 131 ~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~ 210 (364)
T cd05473 131 VKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYN 210 (364)
T ss_pred HhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEeccccccccc
Confidence 66666543 9996631 1124799999982
Q ss_pred --------cCh-----hhHHHHHHHHHhhccc---cCCC--CCCCcceeeccCCcccccceEEEEEcCC-----eEEEec
Q 014995 303 --------DTV-----NTLRSAFHKRMKKYKK---AKGL--EDLLDTCYDLSAYETVVVPKIAIHFLGG-----VDLELD 359 (415)
Q Consensus 303 --------GTv-----~~l~~af~~~~~~~~~---~~~~--~~~~d~Cy~~~~~~~~~~P~i~f~F~gG-----a~~~l~ 359 (415)
||. ..+.+++.+.+..... .+.. ......|+.........+|+|+|+|+|+ .+++|+
T Consensus 211 ~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~ 290 (364)
T cd05473 211 YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITIL 290 (364)
T ss_pred CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEEC
Confidence 222 2223333333322110 0110 0112357764432224689999999752 478999
Q ss_pred CCCeEEEeC---CCeEEEEEEecCCCCCceeechhhhcceEEEEECCCCEEEEeeCCCC
Q 014995 360 VRGTLVVAS---VSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNCS 415 (415)
Q Consensus 360 ~~~~l~~~~---~~~~Cla~~~~~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C~ 415 (415)
+++|+.... ....|+++.... ..+.||||++|||++|+|||++++|||||+.+|.
T Consensus 291 p~~Y~~~~~~~~~~~~C~~~~~~~-~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~ 348 (364)
T cd05473 291 PQLYLRPVEDHGTQLDCYKFAISQ-STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCA 348 (364)
T ss_pred HHHhhhhhccCCCcceeeEEeeec-CCCceEEeeeeEcceEEEEECCCCEEeeEecccc
Confidence 999997642 246798655432 2346999999999999999999999999999995
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.5e-38 Score=326.50 Aligned_cols=251 Identities=22% Similarity=0.343 Sum_probs=187.6
Q ss_pred CCCCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCc--ccCCCCCCCCCCCCCccccccCCCccccccccCCCCCC
Q 014995 126 DTVADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIH--CFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGN 203 (415)
Q Consensus 126 ~~~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~--C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~ 203 (415)
+..+.+|+++|.||||+|++.|+|||||+++||+|..|.. |.. .+.|||++|+|++...
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~--~~~yd~s~SsT~~~~~----------------- 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI--KNLYDSSKSKSYEKDG----------------- 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc--CCCccCccCcccccCC-----------------
Confidence 4445899999999999999999999999999999999974 764 4799999999998753
Q ss_pred CCCCCCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC---CC--CCCCcccccCCCCcee----
Q 014995 204 CNSKECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG---DK--SGASGIMGLDRSPVSI---- 274 (415)
Q Consensus 204 C~~~~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g---~f--~~~~GIlGLG~~~~Sl---- 274 (415)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ ..||++.+..+ .+ ...+||||||++.++.
T Consensus 194 -----~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~----~~---~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~ 260 (450)
T PTZ00013 194 -----TKVDITYGSGT-VKGFFSKDLVTLGHLS----MP---YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSID 260 (450)
T ss_pred -----cEEEEEECCce-EEEEEEEEEEEECCEE----Ec---cEEEEEEeccccccceecccccceecccCCccccccCC
Confidence 78999999997 8999999999998754 44 57888876543 13 2589999999987653
Q ss_pred --eccccc----ce--EEEEcCCCCCCceEEEECCC------------------------------------------cC
Q 014995 275 --ITRTNT----SY--FSYCLPSPYGSTGYITFGKT------------------------------------------DT 304 (415)
Q Consensus 275 --~sQl~~----~~--FSycL~~~~~~~G~L~fG~t------------------------------------------GT 304 (415)
+.|+.. .. ||+||++.+...|.|+|||. ||
T Consensus 261 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDSGT 340 (450)
T PTZ00013 261 PIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMQKANVIVDSGT 340 (450)
T ss_pred CHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEEEEECceeccccceEECCCC
Confidence 334432 22 99999876556799999993 33
Q ss_pred h--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEe--CCCeEEE-EEEec
Q 014995 305 V--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVA--SVSQVCL-GFATY 379 (415)
Q Consensus 305 v--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~--~~~~~Cl-a~~~~ 379 (415)
. ....+.+.+.++..+... . .....|..+|.. ..+|+|+|+| +|++++|+|++|+.+. .....|+ +|++.
T Consensus 341 Sli~lP~~~~~~i~~~l~~~~-~--~~~~~y~~~C~~-~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~ 415 (450)
T PTZ00013 341 TTITAPSEFLNKFFANLNVIK-V--PFLPFYVTTCDN-KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPV 415 (450)
T ss_pred ccccCCHHHHHHHHHHhCCee-c--CCCCeEEeecCC-CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEEC
Confidence 3 111222222222222110 0 111224445543 4589999999 6799999999999753 2345797 88776
Q ss_pred CCCCCceeechhhhcceEEEEECCCCEEEEeeCC
Q 014995 380 PPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGN 413 (415)
Q Consensus 380 ~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~ 413 (415)
..+.+.||||++|||++|+|||++++|||||+++
T Consensus 416 ~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 416 DIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4444679999999999999999999999999874
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.2e-37 Score=298.80 Aligned_cols=229 Identities=34% Similarity=0.651 Sum_probs=176.6
Q ss_pred eEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCc
Q 014995 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (415)
Q Consensus 131 ~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (415)
+|+++|.||||+|++.|+|||||+++||+| |.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~------------------------------------------------~~ 32 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------------------------CS 32 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC------------------------------------------------Cc
Confidence 699999999999999999999999999986 24
Q ss_pred eeEecCCCCeEeEEEEEEEEEeccc--CCCceeeecCeEEEEEEcCCCC-CCCCCcccccCCCCceeecccccc--eEEE
Q 014995 211 FNIQYADGSGSGGFWATDRITIQEA--NSNGYFTRYPFLLGCINNSSGD-KSGASGIMGLDRSPVSIITRTNTS--YFSY 285 (415)
Q Consensus 211 y~i~Ygdgs~~~G~l~~Dtltl~~~--~~~~~v~~~~~~FGc~~~~~g~-f~~~~GIlGLG~~~~Sl~sQl~~~--~FSy 285 (415)
|.+.|+||+.+.|++++|+|+|++. . ++ ++.|||+....+. ....+||||||+...|+++|+..+ .||+
T Consensus 33 ~~~~Y~dg~~~~G~~~~D~v~~g~~~~~----~~--~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~ 106 (265)
T cd05476 33 YEYSYGDGSSTSGVLATETFTFGDSSVS----VP--NVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSY 106 (265)
T ss_pred eEeEeCCCceeeeeEEEEEEEecCCCCc----cC--CEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEE
Confidence 8899999989999999999999986 4 56 9999999988762 236999999999999999999887 4999
Q ss_pred EcCCC--CCCceEEEECCC-----cCh--hhHHH------HHHHHHhhccc----------------cCCCCCCCcceee
Q 014995 286 CLPSP--YGSTGYITFGKT-----DTV--NTLRS------AFHKRMKKYKK----------------AKGLEDLLDTCYD 334 (415)
Q Consensus 286 cL~~~--~~~~G~L~fG~t-----GTv--~~l~~------af~~~~~~~~~----------------~~~~~~~~d~Cy~ 334 (415)
||++. ....|+|+||+. |.+ ..+.. .+.-.+..+.. ......++|+-..
T Consensus 107 ~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs 186 (265)
T cd05476 107 CLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTT 186 (265)
T ss_pred EccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCc
Confidence 99875 346799999985 222 11111 11111111100 0000123333222
Q ss_pred ccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEecCCCCCceeechhhhcceEEEEECCCCEEEEeeCCC
Q 014995 335 LSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPGNC 414 (415)
Q Consensus 335 ~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~~C 414 (415)
+.-.....+|+|+|+|++|.++.+++++|++....+..|+++.... ..+.+|||+.|||++|++||.+++|||||+++|
T Consensus 187 ~~~lp~~~~P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~-~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 187 LTYLPDPAYPDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSS-SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred ceEcCccccCCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCC-CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 2222223349999999768999999999999776678999998763 456899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=9.1e-36 Score=289.33 Aligned_cols=210 Identities=27% Similarity=0.408 Sum_probs=167.1
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCce
Q 014995 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPF 211 (415)
Q Consensus 132 Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~y 211 (415)
|+++|.||||+|++.|+|||||+++||+|..|..|..+..+.|||++|+|++..+ + |.|
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~----------------~-----~~~ 59 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLP----------------G-----ATW 59 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecC----------------C-----cEE
Confidence 8999999999999999999999999999999998877777889999999998753 2 789
Q ss_pred eEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCC-CC--CCCCcccccCCCCceeec---------ccc
Q 014995 212 NIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSG-DK--SGASGIMGLDRSPVSIIT---------RTN 279 (415)
Q Consensus 212 ~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g-~f--~~~~GIlGLG~~~~Sl~s---------Ql~ 279 (415)
.+.|++|+.+.|.+++|+|+|++.. ++ ++.|||++...+ .+ ...+||||||+...+... ++.
T Consensus 60 ~i~Y~~G~~~~G~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~ 133 (278)
T cd06097 60 SISYGDGSSASGIVYTDTVSIGGVE----VP--NQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENAL 133 (278)
T ss_pred EEEeCCCCeEEEEEEEEEEEECCEE----EC--CeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHH
Confidence 9999999889999999999998765 77 999999998765 23 379999999998765432 222
Q ss_pred c----ceEEEEcCCCCCCceEEEECCC-----------------------------------------------cCh---
Q 014995 280 T----SYFSYCLPSPYGSTGYITFGKT-----------------------------------------------DTV--- 305 (415)
Q Consensus 280 ~----~~FSycL~~~~~~~G~L~fG~t-----------------------------------------------GTv--- 305 (415)
. ..||+||.+ ...|.|+|||. ||.
T Consensus 134 ~~~~~~~Fs~~l~~--~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~ 211 (278)
T cd06097 134 SSLDAPLFTADLRK--AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLIL 211 (278)
T ss_pred HhccCceEEEEecC--CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhc
Confidence 2 239999986 34799999982 222
Q ss_pred --hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEecCCCC
Q 014995 306 --NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATYPPDP 383 (415)
Q Consensus 306 --~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~~~~~ 383 (415)
..+.+++.+++ +.+. . .....+|.++|... +|.|+|+|
T Consensus 212 lP~~~~~~l~~~l---~g~~-~-~~~~~~~~~~C~~~--~P~i~f~~--------------------------------- 251 (278)
T cd06097 212 LPDAIVEAYYSQV---PGAY-Y-DSEYGGWVFPCDTT--LPDLSFAV--------------------------------- 251 (278)
T ss_pred CCHHHHHHHHHhC---cCCc-c-cCCCCEEEEECCCC--CCCEEEEE---------------------------------
Confidence 22233333333 2111 1 22345788888754 89999998
Q ss_pred CceeechhhhcceEEEEECCCCEEEEee
Q 014995 384 NSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 384 ~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
.||||+.|||++|+|||++++|||||+
T Consensus 252 -~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.5e-34 Score=284.03 Aligned_cols=244 Identities=29% Similarity=0.470 Sum_probs=192.3
Q ss_pred eEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcc-cCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHC-FQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 131 ~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C-~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
+|+++|.||||+|++.|++||||+.+||++..|..| .......|+|++|+|++... +
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~----------------------~ 58 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG----------------------K 58 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE----------------------E
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce----------------------e
Confidence 699999999999999999999999999999998875 33456899999999988853 6
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC---CCCCCcccccCCCC-------ceeecccc
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD---KSGASGIMGLDRSP-------VSIITRTN 279 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~---f~~~~GIlGLG~~~-------~Sl~sQl~ 279 (415)
.+.+.|++|+ +.|.+++|+|+|++.. +. ++.||++....+. ....+||||||+.. .+++.|+.
T Consensus 59 ~~~~~y~~g~-~~G~~~~D~v~ig~~~----~~--~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~ 131 (317)
T PF00026_consen 59 PFSISYGDGS-VSGNLVSDTVSIGGLT----IP--NQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLV 131 (317)
T ss_dssp EEEEEETTEE-EEEEEEEEEEEETTEE----EE--EEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHH
T ss_pred eeeeeccCcc-cccccccceEeeeecc----cc--ccceeccccccccccccccccccccccCCcccccccCCcceecch
Confidence 7999999998 9999999999999865 77 8999999996553 24789999999753 34555554
Q ss_pred cce------EEEEcCCCCCCceEEEECCC----------------------------------------------cCh--
Q 014995 280 TSY------FSYCLPSPYGSTGYITFGKT----------------------------------------------DTV-- 305 (415)
Q Consensus 280 ~~~------FSycL~~~~~~~G~L~fG~t----------------------------------------------GTv-- 305 (415)
.+. ||++|.+.....|.|+|||. ||.
T Consensus 132 ~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i 211 (317)
T PF00026_consen 132 QQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYI 211 (317)
T ss_dssp HTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSE
T ss_pred hhccccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeecccccccc
Confidence 432 99999887666799999993 222
Q ss_pred ---hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCC--CeEEE-EEEec
Q 014995 306 ---NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASV--SQVCL-GFATY 379 (415)
Q Consensus 306 ---~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~--~~~Cl-a~~~~ 379 (415)
..+.+.+.+.+.. .. .+..|.++|.....+|.|+|.| ++.++++++++|++.... ...|. +|.+.
T Consensus 212 ~lp~~~~~~i~~~l~~---~~-----~~~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~ 282 (317)
T PF00026_consen 212 YLPRSIFDAIIKALGG---SY-----SDGVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPM 282 (317)
T ss_dssp EEEHHHHHHHHHHHTT---EE-----ECSEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEE
T ss_pred cccchhhHHHHhhhcc---cc-----cceeEEEecccccccceEEEee-CCEEEEecchHhcccccccccceeEeeeecc
Confidence 3334444444322 11 1156788888777899999999 689999999999988643 34796 77762
Q ss_pred --CCCCCceeechhhhcceEEEEECCCCEEEEeeC
Q 014995 380 --PPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 412 (415)
Q Consensus 380 --~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~ 412 (415)
......+|||..|||++|++||.+++|||||++
T Consensus 283 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 283 DSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 234568999999999999999999999999985
No 22
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=5.1e-35 Score=262.92 Aligned_cols=159 Identities=43% Similarity=0.848 Sum_probs=128.3
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCce
Q 014995 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPF 211 (415)
Q Consensus 132 Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~y 211 (415)
|+++|.||||+|++.|+|||||+++|+|| .++.|||++|+||+.++|.++.|...........|.+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999999 358999999999999999999999875321111223578999
Q ss_pred eEecCCCCeEeEEEEEEEEEecccCCC-ceeeecCeEEEEEEcCCCCCCCCCcccccCCCCceeeccc---ccceEEEEc
Q 014995 212 NIQYADGSGSGGFWATDRITIQEANSN-GYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPVSIITRT---NTSYFSYCL 287 (415)
Q Consensus 212 ~i~Ygdgs~~~G~l~~Dtltl~~~~~~-~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG~~~~Sl~sQl---~~~~FSycL 287 (415)
.+.|+|++.+.|++++|+|+++...++ ..+. ++.|||++...|.+..++||||||++++||++|+ ....|||||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~--~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVP--DFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEE--EEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceee--eEEEEeeeccccCCcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 999999999999999999999886432 2455 9999999999998889999999999999999999 555599999
Q ss_pred CC-CCCCceEEEECC
Q 014995 288 PS-PYGSTGYITFGK 301 (415)
Q Consensus 288 ~~-~~~~~G~L~fG~ 301 (415)
++ .....|+|+||+
T Consensus 150 ~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PSSSPSSSGFLSFGD 164 (164)
T ss_dssp -S-SSSSEEEEEECS
T ss_pred CCCCCCCCEEEEeCc
Confidence 99 445789999995
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=7.6e-34 Score=277.31 Aligned_cols=215 Identities=24% Similarity=0.388 Sum_probs=167.6
Q ss_pred eEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCc
Q 014995 131 EYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECP 210 (415)
Q Consensus 131 ~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~ 210 (415)
.|+++|.||||+|++.|++||||+++||+ .
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------~ 31 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------D 31 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee--------------------------------------------------e
Confidence 69999999999999999999999999997 1
Q ss_pred eeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCCCCCCcccccCCCCc-----------eeecccc
Q 014995 211 FNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLDRSPV-----------SIITRTN 279 (415)
Q Consensus 211 y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG~~~~-----------Sl~sQl~ 279 (415)
|++.|+||+.+.|.+++|+|+|++.. ++ ++.|||++... ..+||||||+.+. +++.|+.
T Consensus 32 ~~~~Y~~g~~~~G~~~~D~v~~g~~~----~~--~~~fg~~~~~~----~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~ 101 (295)
T cd05474 32 FSISYGDGTSASGTWGTDTVSIGGAT----VK--NLQFAVANSTS----SDVGVLGIGLPGNEATYGTGYTYPNFPIALK 101 (295)
T ss_pred eEEEeccCCcEEEEEEEEEEEECCeE----ec--ceEEEEEecCC----CCcceeeECCCCCcccccCCCcCCCHHHHHH
Confidence 78899998889999999999998765 77 99999999843 4799999999886 5677775
Q ss_pred cce------EEEEcCCCCCCceEEEECCC---------------------------------------------------
Q 014995 280 TSY------FSYCLPSPYGSTGYITFGKT--------------------------------------------------- 302 (415)
Q Consensus 280 ~~~------FSycL~~~~~~~G~L~fG~t--------------------------------------------------- 302 (415)
.+. ||+||.+.+...|.|+|||.
T Consensus 102 ~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ 181 (295)
T cd05474 102 KQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPA 181 (295)
T ss_pred HCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccE
Confidence 432 99999986556799999982
Q ss_pred ----cCh--hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeC----CCeE
Q 014995 303 ----DTV--NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVAS----VSQV 372 (415)
Q Consensus 303 ----GTv--~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~----~~~~ 372 (415)
||. ....+.+.+.++.+..... .....|..+|..... |.|+|+| +|++++|++++|+++.. ....
T Consensus 182 iiDSGt~~~~lP~~~~~~l~~~~~~~~~---~~~~~~~~~C~~~~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~~ 256 (295)
T cd05474 182 LLDSGTTLTYLPSDIVDAIAKQLGATYD---SDEGLYVVDCDAKDD-GSLTFNF-GGATISVPLSDLVLPASTDDGGDGA 256 (295)
T ss_pred EECCCCccEeCCHHHHHHHHHHhCCEEc---CCCcEEEEeCCCCCC-CEEEEEE-CCeEEEEEHHHhEeccccCCCCCCC
Confidence 111 1112223333332222111 112345666765555 9999999 67999999999998863 3667
Q ss_pred EE-EEEecCCCCCceeechhhhcceEEEEECCCCEEEEeeC
Q 014995 373 CL-GFATYPPDPNSITLGNVQQRGHEVHYDVAGRRLGFGPG 412 (415)
Q Consensus 373 Cl-a~~~~~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~~ 412 (415)
|+ +|++... ..+|||+.|||++|++||.+++|||||++
T Consensus 257 C~~~i~~~~~--~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 257 CYLGIQPSTS--DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred eEEEEEeCCC--CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 95 8987642 67999999999999999999999999985
No 24
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5.9e-33 Score=268.02 Aligned_cols=211 Identities=33% Similarity=0.558 Sum_probs=167.8
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCC--CCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPF--FYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 132 Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~--fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
|+++|.||||+|++.|++||||+++||+|..|..|..+.... |++..|+++.. ..|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~----------------------~~~ 58 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKD----------------------TGC 58 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeec----------------------CCC
Confidence 789999999999999999999999999999999865554444 77777776554 238
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCC--CCCCCcccccCCCC------ceeecccccc
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGD--KSGASGIMGLDRSP------VSIITRTNTS 281 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~--f~~~~GIlGLG~~~------~Sl~sQl~~~ 281 (415)
.|.+.|++|+ +.|.+++|+|+|++.. ++ ++.|||++...+. ....+||||||+.. .+++.|+..+
T Consensus 59 ~~~~~Y~~g~-~~g~~~~D~v~~~~~~----~~--~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~ 131 (283)
T cd05471 59 TFSITYGDGS-VTGGLGTDTVTIGGLT----IP--NQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQ 131 (283)
T ss_pred EEEEEECCCe-EEEEEEEeEEEECCEE----Ee--ceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHC
Confidence 9999999985 7899999999999865 67 9999999998763 24799999999998 6888888764
Q ss_pred e------EEEEcCCC--CCCceEEEECCC-------------------------------------------------cC
Q 014995 282 Y------FSYCLPSP--YGSTGYITFGKT-------------------------------------------------DT 304 (415)
Q Consensus 282 ~------FSycL~~~--~~~~G~L~fG~t-------------------------------------------------GT 304 (415)
. ||+||.+. ....|.|+||+. ||
T Consensus 132 ~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt 211 (283)
T cd05471 132 GLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGT 211 (283)
T ss_pred CCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCC
Confidence 2 99999985 346799999982 11
Q ss_pred h-----hhHHHHHHHHHhhccccCCCCCCCcceeeccCCcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEec
Q 014995 305 V-----NTLRSAFHKRMKKYKKAKGLEDLLDTCYDLSAYETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFATY 379 (415)
Q Consensus 305 v-----~~l~~af~~~~~~~~~~~~~~~~~d~Cy~~~~~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~~ 379 (415)
. ..+.+++.+++ .... ...+.|+...+.....+|.|+|+|
T Consensus 212 ~~~~lp~~~~~~l~~~~---~~~~---~~~~~~~~~~~~~~~~~p~i~f~f----------------------------- 256 (283)
T cd05471 212 SLIYLPSSVYDAILKAL---GAAV---SSSDGGYGVDCSPCDTLPDITFTF----------------------------- 256 (283)
T ss_pred CCEeCCHHHHHHHHHHh---CCcc---cccCCcEEEeCcccCcCCCEEEEE-----------------------------
Confidence 1 22233333333 2211 114567777777778899999999
Q ss_pred CCCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 380 PPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 380 ~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
.+|||+.|||++|++||.++++||||+
T Consensus 257 -----~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -----LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -----EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 599999999999999999999999985
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=6.4e-24 Score=177.23 Aligned_cols=105 Identities=31% Similarity=0.533 Sum_probs=92.2
Q ss_pred EEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCC-CCCCCCccccccCCCccccccccCCCCCCCCCCCCcee
Q 014995 134 IVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFF-YASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFN 212 (415)
Q Consensus 134 v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~f-dps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~y~ 212 (415)
++|.||||+|++.|+|||||+++||+|.+|..|..+..+.| ||++|+|++... |.|.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~----------------------~~~~ 58 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG----------------------CTFS 58 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC----------------------cEEE
Confidence 47999999999999999999999999999988766666677 999999988743 8899
Q ss_pred EecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCC---CCCCccccc
Q 014995 213 IQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDK---SGASGIMGL 267 (415)
Q Consensus 213 i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f---~~~~GIlGL 267 (415)
+.|+||+ ..|.+++|+|+|++.. ++ ++.|||++...+.+ ...+|||||
T Consensus 59 ~~Y~~g~-~~g~~~~D~v~ig~~~----~~--~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 59 ITYGTGS-LSGGLSTDTVSIGDIE----VV--GQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEeCCCe-EEEEEEEEEEEECCEE----EC--CEEEEEEEecCCccccccccccccCC
Confidence 9999996 6799999999998765 67 99999999998753 468999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.72 E-value=2.3e-17 Score=147.67 Aligned_cols=105 Identities=32% Similarity=0.555 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHhhcc--c-cCCCCCCCcceeeccC----CcccccceEEEEEcCCeEEEecCCCeEEEeCCCeEEEEEEe
Q 014995 306 NTLRSAFHKRMKKYK--K-AKGLEDLLDTCYDLSA----YETVVVPKIAIHFLGGVDLELDVRGTLVVASVSQVCLGFAT 378 (415)
Q Consensus 306 ~~l~~af~~~~~~~~--~-~~~~~~~~d~Cy~~~~----~~~~~~P~i~f~F~gGa~~~l~~~~~l~~~~~~~~Cla~~~ 378 (415)
.+|+++|.+++.... + .... ..++.||+.+. .....+|+|+|||.||++++|++++|++....+..|++|.+
T Consensus 49 ~~l~~al~~~~~~~~~~~~~~~~-~~~~~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~ 127 (161)
T PF14541_consen 49 DALVQALDAQMGAPGVSREAPPF-SGFDLCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVP 127 (161)
T ss_dssp HHHHHHHHHHHHTCT--CEE----TT-S-EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEE
T ss_pred HHHHHHHHHHhhhcccccccccC-CCCCceeeccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEc
Confidence 778888888887653 2 2333 77899999987 35678999999999999999999999999888899999998
Q ss_pred c-CCCCCceeechhhhcceEEEEECCCCEEEEee
Q 014995 379 Y-PPDPNSITLGNVQQRGHEVHYDVAGRRLGFGP 411 (415)
Q Consensus 379 ~-~~~~~~~IlG~~~~~~~~vvfD~~~~~iGFa~ 411 (415)
. ..+.+.+|||+.||++++|+||++++||||+|
T Consensus 128 ~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~~ 161 (161)
T PF14541_consen 128 SDADDDGVSVIGNFQQQNYHVVFDLENGRIGFAP 161 (161)
T ss_dssp ETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEEE
T ss_pred cCCCCCCcEEECHHHhcCcEEEEECCCCEEEEeC
Confidence 8 33457899999999999999999999999986
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.75 E-value=0.00011 Score=58.84 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKEC 209 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c 209 (415)
+.|++++.|+ .+++.+++|||++.+|+.-.-...+. . + .. ...
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~-----~--~-----~~-----------------------~~~ 43 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG-----L--P-----LT-----------------------LGG 43 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC-----C--C-----cc-----------------------CCC
Confidence 3589999999 79999999999999999654211111 0 0 00 003
Q ss_pred ceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCCCCCCcccccC
Q 014995 210 PFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLD 268 (415)
Q Consensus 210 ~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG 268 (415)
...+..++|.........+.+++++.. ++ ++.+........ ..+||||+.
T Consensus 44 ~~~~~~~~G~~~~~~~~~~~i~ig~~~----~~--~~~~~v~d~~~~---~~~gIlG~d 93 (96)
T cd05483 44 KVTVQTANGRVRAARVRLDSLQIGGIT----LR--NVPAVVLPGDAL---GVDGLLGMD 93 (96)
T ss_pred cEEEEecCCCccceEEEcceEEECCcE----Ee--ccEEEEeCCccc---CCceEeChH
Confidence 466777788766667778899998765 67 888777665432 589999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.90 E-value=0.23 Score=42.16 Aligned_cols=95 Identities=13% Similarity=0.137 Sum_probs=60.8
Q ss_pred CCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCC
Q 014995 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (415)
Q Consensus 128 ~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~ 207 (415)
.++.|++++.|. .+++.+++|||++.+-+...--..- ..++.. .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~L------gl~~~~----------------------------~ 51 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRL------GLDLNR----------------------------L 51 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHc------CCCccc----------------------------C
Confidence 348999999998 6899999999999988754321110 011110 0
Q ss_pred CCceeEecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCCCCCCcccccC
Q 014995 208 ECPFNIQYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLD 268 (415)
Q Consensus 208 ~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG 268 (415)
.-...+.=++|......+.-|.+++++.. ++ |+++....... ..+||||+.
T Consensus 52 ~~~~~~~ta~G~~~~~~~~l~~l~iG~~~----~~--nv~~~v~~~~~----~~~~LLGm~ 102 (121)
T TIGR02281 52 GYTVTVSTANGQIKAARVTLDRVAIGGIV----VN--DVDAMVAEGGA----LSESLLGMS 102 (121)
T ss_pred CceEEEEeCCCcEEEEEEEeCEEEECCEE----Ee--CcEEEEeCCCc----CCceEcCHH
Confidence 01223333456545555688999999876 77 88887764321 137999985
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=94.60 E-value=0.22 Score=38.88 Aligned_cols=89 Identities=20% Similarity=0.233 Sum_probs=52.9
Q ss_pred EEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCCCCceeE
Q 014995 134 IVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSKECPFNI 213 (415)
Q Consensus 134 v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~~c~y~i 213 (415)
|++.|+ .+++.+++|||++.+.+.-.-.... ...+... .....+
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l------~~~~~~~----------------------------~~~~~~ 44 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKL------GLKPRPK----------------------------SVPISV 44 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHc------CCCCcCC----------------------------ceeEEE
Confidence 356676 6899999999999887753322111 0000000 012334
Q ss_pred ecCCCCeEeEEEEEEEEEecccCCCceeeecCeEEEEEEcCCCCCCCCCcccccC
Q 014995 214 QYADGSGSGGFWATDRITIQEANSNGYFTRYPFLLGCINNSSGDKSGASGIMGLD 268 (415)
Q Consensus 214 ~Ygdgs~~~G~l~~Dtltl~~~~~~~~v~~~~~~FGc~~~~~g~f~~~~GIlGLG 268 (415)
.-.+|.........+.+++++.. +. ++.|-.... -...+||||+-
T Consensus 45 ~~~~g~~~~~~~~~~~i~ig~~~----~~--~~~~~v~~~----~~~~~~iLG~d 89 (90)
T PF13650_consen 45 SGAGGSVTVYRGRVDSITIGGIT----LK--NVPFLVVDL----GDPIDGILGMD 89 (90)
T ss_pred EeCCCCEEEEEEEEEEEEECCEE----EE--eEEEEEECC----CCCCEEEeCCc
Confidence 44455555566677789998755 66 777665551 12578999973
No 30
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.79 E-value=0.27 Score=39.22 Aligned_cols=29 Identities=24% Similarity=0.293 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCcEEEEEEECCCCceeeecCC
Q 014995 132 YYIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (415)
Q Consensus 132 Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~ 162 (415)
|++++.|+ .+++.+++||||+.+++.-+.
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 799999999999999997543
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=89.19 E-value=2.7 Score=35.69 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=26.4
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~ 161 (415)
..+++++.|+ ++++.+++|||+..+++.-.
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 6789999999 78999999999999998644
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.81 E-value=2 Score=32.75 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.2
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecCCC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPC 163 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C 163 (415)
+.+++.+.|| ++.+.+++|||++...+...-+
T Consensus 7 g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 7 GLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred CEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 8899999999 6999999999999998876544
No 33
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=82.28 E-value=2 Score=34.57 Aligned_cols=28 Identities=43% Similarity=0.587 Sum_probs=23.2
Q ss_pred EEEEEeCCCCcEEEEEEECCCCceeeecCC
Q 014995 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCKP 162 (415)
Q Consensus 133 ~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~ 162 (415)
+++|.|. .+++.+++||||+.+-++-..
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 4667777 689999999999999997553
No 34
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.91 E-value=4.4 Score=32.43 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEeCCCCcEEEEEEECCCCceeeecC
Q 014995 135 VVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (415)
Q Consensus 135 ~v~iGTP~q~~~liiDTGSd~~Wv~c~ 161 (415)
++.|+ .|.+.+++|||+|++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 79999999999999999643
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.01 E-value=10 Score=29.79 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=20.2
Q ss_pred EEEeCCCCcEEEEEEECCCCceeeecC
Q 014995 135 VVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (415)
Q Consensus 135 ~v~iGTP~q~~~liiDTGSd~~Wv~c~ 161 (415)
.+.|. ++++.+++|||++.+-+.-.
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34555 68999999999999999644
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=47.65 E-value=69 Score=29.89 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=51.0
Q ss_pred CCceEEEEEEeCCCCcEEEEEEECCCCceeeecCCCCcccCCCCCCCCCCCCCccccccCCCccccccccCCCCCCCCCC
Q 014995 128 VADEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPFFYASKSKTFFKIPCNSTSCRILRESFPFGNCNSK 207 (415)
Q Consensus 128 ~~~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~v~C~s~~C~~~~~~~~~~~C~~~ 207 (415)
.+|.|.++..|- +|++..++|||-..+-+.-+... .--||.+..
T Consensus 102 ~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~------RlGid~~~l---------------------------- 145 (215)
T COG3577 102 RDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR------RLGIDLNSL---------------------------- 145 (215)
T ss_pred CCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH------HhCCCcccc----------------------------
Confidence 349999999998 89999999999988777544321 113443321
Q ss_pred CCceeEecCCCCeEeEEEEEEEEEecccC
Q 014995 208 ECPFNIQYADGSGSGGFWATDRITIQEAN 236 (415)
Q Consensus 208 ~c~y~i~Ygdgs~~~G~l~~Dtltl~~~~ 236 (415)
.-++.++=++|....-..-.|.|.|++..
T Consensus 146 ~y~~~v~TANG~~~AA~V~Ld~v~IG~I~ 174 (215)
T COG3577 146 DYTITVSTANGRARAAPVTLDRVQIGGIR 174 (215)
T ss_pred CCceEEEccCCccccceEEeeeEEEccEE
Confidence 14566666788765566777999998765
No 37
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=39.76 E-value=24 Score=26.43 Aligned_cols=20 Identities=35% Similarity=0.551 Sum_probs=14.8
Q ss_pred ChHHHHHHHHHHHHHHhcCC
Q 014995 1 MWILSKAFLLFICLLCSSNN 20 (415)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (415)
|||.+.++|.+++|.+.+..
T Consensus 1 MWIiiSIvLai~lLI~l~~n 20 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLSVN 20 (66)
T ss_pred ChhhHHHHHHHHHHHHHhhh
Confidence 99998888877777764443
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=33.27 E-value=55 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.356 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcEEEEEEECCCCceeeecC
Q 014995 133 YIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (415)
Q Consensus 133 ~v~v~iGTP~q~~~liiDTGSd~~Wv~c~ 161 (415)
...+.+++-..++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34445555579999999999999888654
No 39
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=31.33 E-value=78 Score=27.05 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=22.1
Q ss_pred ceEEEEEEeCCCCcEEEEEEECCCCceeeecC
Q 014995 130 DEYYIVVAIGEPKQYVSLLLDTGSDVTWTQCK 161 (415)
Q Consensus 130 ~~Y~v~v~iGTP~q~~~liiDTGSd~~Wv~c~ 161 (415)
..+|+++.|. .+++.+++|||...+-+.-.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 5678999999 79999999999998888543
No 40
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.02 E-value=45 Score=27.10 Aligned_cols=7 Identities=86% Similarity=1.179 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 014995 5 SKAFLLF 11 (415)
Q Consensus 5 ~~~~~~~ 11 (415)
+|+||||
T Consensus 3 SK~~llL 9 (95)
T PF07172_consen 3 SKAFLLL 9 (95)
T ss_pred hhHHHHH
Confidence 4544444
No 41
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=21.13 E-value=75 Score=25.41 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.3
Q ss_pred cEEEEEEECCCCceeee
Q 014995 143 QYVSLLLDTGSDVTWTQ 159 (415)
Q Consensus 143 q~~~liiDTGSd~~Wv~ 159 (415)
++..+.+|||++..-++
T Consensus 9 ~~v~~~vDtGA~vnllp 25 (93)
T cd05481 9 QSVKFQLDTGATCNVLP 25 (93)
T ss_pred eeEEEEEecCCEEEecc
Confidence 88999999999988775
No 42
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=20.70 E-value=1.3e+02 Score=18.34 Aligned_cols=14 Identities=14% Similarity=0.474 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 014995 3 ILSKAFLLFICLLC 16 (415)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (415)
+|+|++++++.++.
T Consensus 6 mmKkil~~l~a~~~ 19 (25)
T PF08139_consen 6 MMKKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777765553
Done!