BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014997
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 170/356 (47%), Gaps = 27/356 (7%)
Query: 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF-HTCVGSGGERQTPEWYKEKGI 61
+GR+ ++ +E PYERP L+K YL AR F C+ + +++++K +
Sbjct: 34 EGRVLVIGREPEIPYERPPLSKEYL-------AREKTFERICI------RPAQFWEDKAV 80
Query: 62 EMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA 121
EM V S+D T+ G ++YG LI ATG R +G L GVH +R
Sbjct: 81 EMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRL-SCVGADLAGVHAVRTKE 139
Query: 122 DADALISSLEK-AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
DAD L++ L+ AK YIG+E AA + ++ T++ +L R+ +L++
Sbjct: 140 DADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240
Y+ ++ +GV GA++ +E G +V V+++DGS I AD +++GIG P V
Sbjct: 200 YQAEHRAHGVDLRTGAAMDCIE-GDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALIS 258
Query: 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA-RVEHVDHARQSAQHCIKA 299
G + G+ VD RT + ++AIGD AA D R+E V +A A K
Sbjct: 259 AGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKD 317
Query: 300 LLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWI 355
+ A Y P+F+S ++ + Q G + G + DP +F +
Sbjct: 318 ICGAPV-PYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSV 365
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 155/318 (48%), Gaps = 27/318 (8%)
Query: 4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT----PE-WYKE 58
GR+ +++ E + PY+RP L+K YL SGG+ + PE ++++
Sbjct: 27 GRIALINDEKHLPYQRPPLSKAYL-----------------KSGGDPNSLMFRPEKFFQD 69
Query: 59 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 118
+ IE+I D + SID E + L+ SG ++YG L++ATG +R + LP V Y+R
Sbjct: 70 QAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLATGAR-NRMLDVPNASLPDVLYLR 127
Query: 119 DVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLA 178
+ +++ L + K +IG+E AA A L+ ++ ++ R+ TP ++
Sbjct: 128 TLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEIS 187
Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
+ + G++ G + A D RV V L DG+T+ D +V+G+G P V
Sbjct: 188 SYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVVLSDGNTLPCDLVVVGVGVIPNVE-I 245
Query: 239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 298
+ GI VD Q T P I AIGD A F + T RVE V +A A+ C+
Sbjct: 246 AAAAGLPTAAGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQAR-CVA 304
Query: 299 ALLSAQTHTYDYLPYFYS 316
A L+ YD P+F+S
Sbjct: 305 ARLTGDAKPYDGYPWFWS 322
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)
Query: 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
+G + +V P+ P L+K YL A + +TP+ Y + I+
Sbjct: 29 EGNIRLVGDATVIPHHLPPLSKAYL----AGKATAESLYL--------RTPDAYAAQNIQ 76
Query: 63 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
++ VT+I+ ++Q +I + G+ L Y L++ATG P G G Y+R +
Sbjct: 77 LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 136
Query: 121 ADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
DA+ + L + YIG+EVAA A+ + T++ +L+R+ P ++
Sbjct: 137 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 196
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
YE L+++ GV G + E +D +V AV EDG+ + AD ++ GIG P
Sbjct: 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 256
Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
GL GI ++ +T P I A+GD A F ++YDR R+E V +A + A+ I A
Sbjct: 257 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAA 314
Query: 300 LLSAQTHTYDYLPYFYSRVFE 320
+L + + P+F+S +E
Sbjct: 315 ILCGKVPRDEAAPWFWSDQYE 335
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 154/321 (47%), Gaps = 17/321 (5%)
Query: 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
+G + +V P+ P L+K YL A + +TP+ Y + I+
Sbjct: 28 EGNIRLVGDATVIPHHLPPLSKAYL----AGKATAESLYL--------RTPDAYAAQNIQ 75
Query: 63 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG--GYLPGVHYIRDV 120
++ VT+I+ ++Q +I + G+ L Y L++ATG P G G Y+R +
Sbjct: 76 LLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTL 135
Query: 121 ADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 180
DA+ + L + YIG+EVAA A+ + T++ +L+R+ P ++
Sbjct: 136 EDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAF 195
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239
YE L+++ GV G + E +D +V AV EDG+ + AD ++ GIG P
Sbjct: 196 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS 255
Query: 240 RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 299
GL GI ++ +T P I A+GD A F ++YDR R+E V +A + A+ I A
Sbjct: 256 AAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARK-IAA 313
Query: 300 LLSAQTHTYDYLPYFYSRVFE 320
+L + + P+F+S +E
Sbjct: 314 ILCGKVPRDEAAPWFWSDQYE 334
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 128/277 (46%), Gaps = 17/277 (6%)
Query: 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIE 62
+GR+ ++ E + PY+RP+L+K L ++P L +WY E I+
Sbjct: 27 EGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILA-------------EADWYGEARID 73
Query: 63 MIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD 122
M+ VT++D++ +T+ + G L ++++ATG A R G LPGV +R D
Sbjct: 74 MLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRA-RTMALPGSQLPGVVTLRTYGD 132
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
L S A + IG EVA A L TI+ + LL R+ +
Sbjct: 133 VQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLR 192
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
L + GV+ G + +G++ V DG + AD+ +I +GA+P + G
Sbjct: 193 GLLTELGVQVELGTGVVGFSG--EGQLEQVMASDGRSFVADSALICVGAEPADQLARQAG 250
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
L G I VD T G+FA+GDVA++PL+ R
Sbjct: 251 LACDRGVI-VDHCGATLAKGVFAVGDVASWPLRAGGR 286
>pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
Length = 408
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 26/314 (8%)
Query: 4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
G + +V EA PY+RP L+K ++ D + RL C ++ PE +E
Sbjct: 33 GLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC------KRAPE------VEW 76
Query: 64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
+ S D + T+ + G+ L YG+L++ATG P G +P VH +R + DA
Sbjct: 77 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDA 135
Query: 124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
+ + L + IG+E+AA A + +++ + L+ R +LA +
Sbjct: 136 RRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 184 LYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
+ GV E G V V L+DG+ I AD +V+GIG + G
Sbjct: 196 YHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG 248
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
L GI VD RT P ++A+GDV + R R+E +A+ + L+
Sbjct: 249 LACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307
Query: 303 AQTHTYDYLPYFYS 316
Y LP+++S
Sbjct: 308 PTAPGYAELPWYFS 321
>pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase,
Bpha4
pdb|1F3P|A Chain A, Ferredoxin Reductase (Bpha4)-Nadh Complex
pdb|2GQW|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2GR0|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (oxidized
Form, Nad+ Complex)
pdb|2GR1|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Hydroquinone)
pdb|2GR2|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized
Form)
pdb|2YVF|A Chain A, Crystal Structure Of Ferredoxin Reductase Bpha4
(Hydroquinone)
pdb|2YVG|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4
(Blue-Semiquinone)
pdb|2YVJ|A Chain A, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
pdb|2YVJ|P Chain P, Crystal Structure Of The Ferredoxin-Ferredoxin Reductase
(Bpha3-Bpha4)complex
Length = 408
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 137/314 (43%), Gaps = 26/314 (8%)
Query: 4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEM 63
G + +V EA PY+RP L+K ++ D + RL C ++ PE +E
Sbjct: 33 GLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL----DC------KRAPE------VEW 76
Query: 64 IYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 123
+ S D + T+ + G+ L YG+L++ATG P G +P VH +R + DA
Sbjct: 77 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGATMP-VHTLRTLEDA 135
Query: 124 DALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 183
+ + L + IG+E+AA A + +++ + L+ R +LA +
Sbjct: 136 RRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 195
Query: 184 LYQQNGVKFVKGASIKNLEAGSDGRV-AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242
+ GV E G V V L+DG+ I AD +V+GIG + G
Sbjct: 196 YHAAQGVDL-------RFERSVTGSVDGVVLLDDGTRIAADMVVVGIGVLANDALARAAG 248
Query: 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302
L GI VD RT P ++A+GDV + R R+E +A+ + L+
Sbjct: 249 LACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVD 307
Query: 303 AQTHTYDYLPYFYS 316
Y LP+++S
Sbjct: 308 PTAPGYAELPWYWS 321
>pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis
Inducing Factor (Aif)
Length = 514
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/372 (26%), Positives = 163/372 (43%), Gaps = 49/372 (13%)
Query: 5 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 113
Query: 57 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 114 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 173
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 163
+ R + D +L + K ++G E+A A +G K L T +I F
Sbjct: 174 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLF 232
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETD 290
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 291 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 348
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 340
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG-Y 390
Query: 341 IEIGNFDPKIAT 352
+ IG D + T
Sbjct: 391 VAIGLVDSSLPT 402
>pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
pdb|3GD4|B Chain B, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine
Apoptosis Inducing Factor
Length = 511
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 56 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 113
Query: 57 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 114 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 173
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
+ R + D AL + K ++G E+A A +G K ++ +F
Sbjct: 174 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 232
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 233 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 290
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 291 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 348
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 349 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 389
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 75 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 132
Query: 57 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 133 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 192
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
+ R + D AL + K ++G E+A A +G K ++ +F
Sbjct: 193 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 251
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 252 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 309
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 310 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 367
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 368 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 408
>pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|B Chain B, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|C Chain C, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
pdb|3GD3|D Chain D, Crystal Structure Of A Naturally Folded Murine Apoptosis
Inducing Factor
Length = 535
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 48/358 (13%)
Query: 5 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 80 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLQFRQW--NGKERSIYFQPPSFYVSAQ 137
Query: 57 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
+ G+ ++ V +D+ + N G + + ++ATG T ++ G
Sbjct: 138 DLPNIENGGVAVLTGKKVVHLDVRGNMVKLNDGSQITFEKCLIATGGTPRSLSAIDRAGA 197
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK-----LDTTIIF 163
+ R + D AL + K ++G E+A A +G K ++ +F
Sbjct: 198 EVKSRTTLFRKIGDFRALEKISREVKSITVIGGGFLGSELACA-LGRKSQASGIEVIQLF 256
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
PE + ++ L+ + ++ GVK + A ++++ G G +KL+DG ++ D
Sbjct: 257 PEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSV--GVSGGRLLIKLKDGRKVETD 314
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 315 HIVTAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 372
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 373 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 413
>pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif)
Length = 493
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 157/358 (43%), Gaps = 48/358 (13%)
Query: 5 RLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER----QTPEWY---- 56
R+ IVS++ PY RP L+K F D + F +G ER Q P +Y
Sbjct: 38 RVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQW--NGKERSIYFQPPSFYVSAQ 95
Query: 57 -----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGG 109
+ G+ ++ V +D+ + N G + Y ++ATG T ++ G
Sbjct: 96 DLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGA 155
Query: 110 YLPG-VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWK---LDTTII--F 163
+ R + D +L + K ++G E+A A +G K L T +I F
Sbjct: 156 EVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACA-LGRKARALGTEVIQLF 214
Query: 164 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDAD 223
PE + ++ L+ + ++ GVK + A ++++ S G++ +KL+DG ++ D
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGV-SSGKLL-IKLKDGRKVETD 272
Query: 224 TIVIGIGAKPTVSPFERVGL--NSSVGGIQVDGQFRTRMPGIFAIGDVAAF-PLKMYDRT 280
IV +G +P V + GL +S GG +V+ + + R I+ GD A F +K+ R
Sbjct: 273 HIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRR- 330
Query: 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 338
RVEH DHA + L+ + T PY++ +F W G +VG
Sbjct: 331 -RVEHHDHA------VVSGRLAGENMTGAAKPYWHQSMF----------WSDLGPDVG 371
>pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine
Nucleotide-Disulphide Oxidoreductase From Desulfovibrio
Vulgaris
Length = 472
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 13/233 (5%)
Query: 51 QTPEWYK-EKGIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
+ PE+++ K +E + + +ID +E + L T + LKY L++A G A+R P
Sbjct: 70 RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAA-AVGWKLDTTI 161
+ G L GV + ++ +A+ + ++ + K +IG+E+A + A W +DTT+
Sbjct: 130 VE-GMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTV 188
Query: 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 221
+ + ++ + SL+Q ++N V G + LE G +G+VA V + D T+D
Sbjct: 189 VELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLE-GENGKVARV-ITDKRTLD 246
Query: 222 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
AD +++ G P GL G I VD + RT P IFA GD P
Sbjct: 247 ADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIP 299
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 137/315 (43%), Gaps = 37/315 (11%)
Query: 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 113
+WY+++GIE+ + ID ++ +IT G+ + Y +L++ATG A R P+ + G
Sbjct: 68 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGE-VPYDTLVLATGARA-REPQ-----IKG 120
Query: 114 VHY---IRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
Y +R + DAD + S+E + + +IG+E+A +I L
Sbjct: 121 KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG 180
Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230
L+ + + ++ GVKF + + LEA +G L + I+ + IG
Sbjct: 181 --LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEG-----VLTNSGFIEGKVKICAIG 231
Query: 231 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290
P V R G+++ GI +D FRT ++AIGD A + + + A
Sbjct: 232 IVPNVDLARRSGIHTGR-GILIDDNFRTSAKDVYAIGDCAEY-------SGIIAGTAKAA 283
Query: 291 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKI 350
+ +L + Y++ F S VF++ K+ G+ GE G +
Sbjct: 284 MEQARVLADILKGEPRRYNF--KFRSTVFKFG----KLQIAIIGNTKGE----GKWIEDN 333
Query: 351 ATFWIDSGKLKGVLV 365
+ ++GK+ G +V
Sbjct: 334 TKVFYENGKIIGAVV 348
>pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
pdb|2CDU|B Chain B, The Crystal Structure Of Water-Forming Nad(P)h Oxidase
From Lactobacillus Sanfranciscensis
Length = 452
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 20/231 (8%)
Query: 52 TPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPEK 106
+PE G + + VT++D E +T LITN K Y LI+ TG + P
Sbjct: 64 SPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPP-- 121
Query: 107 IGGYLPG-----VHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTI 161
+PG V+ ++ DA L KAK YIG E+A A + +
Sbjct: 122 ----IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNL 177
Query: 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTID 221
I +L + F + Y+ +GV V G+ + E D + K DG I
Sbjct: 178 IDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIIT--KTLDGKEIK 235
Query: 222 ADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
+D ++ IG +P + +V + + G I D + IFA GD AA
Sbjct: 236 SDIAILCIGFRPNTELLKGKVAMLDN-GAIITDEYMHSSNRDIFAAGDSAA 285
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 13/229 (5%)
Query: 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 104
R + + GI+ + VT +D EK+ + K Y L++ATG P
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MP 155
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
E G L GVH ++ + DA+ ++ +LE K + IG+E+A V +I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+H + ++ +A+ + ++ ++ + ++K + RV AV+ + G T A
Sbjct: 216 ERNDH-IGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 223 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 270
D +++ +G KP E + ++ G I+V+ +T + ++A GD A
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCA 320
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
pdb|1EBD|B Chain B, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 455
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 13/196 (6%)
Query: 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXX 141
+S + + + I+ATG SR E LP + + D+ ++ E K
Sbjct: 127 DSAQTYTFKNAIIATG---SRPIE-----LPNFKFSNRILDSTGALNLGEVPKSLVVIGG 178
Query: 142 XYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201
YIG+E+ A + TI+ +L F +A ++ ++ GV+ V A K
Sbjct: 179 GYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVTNALAKGA 237
Query: 202 EAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFR 257
E DG + + TIDAD +++ +G +P E++G+ ++ G I+VD Q R
Sbjct: 238 EEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 297
Query: 258 TRMPGIFAIGDVAAFP 273
T +P IFAIGD+ P
Sbjct: 298 TSVPNIFAIGDIVPGP 313
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 110/224 (49%), Gaps = 27/224 (12%)
Query: 75 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134
E++ L+ +G+ L+ +++ATG +A P V Y R V +AL S E K
Sbjct: 116 ERKVLVEETGEELEARYILIATG-SAPLIPP-----WAQVDYERVVTSTEAL-SFPEVPK 168
Query: 135 KXXXXXXXYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSL----AQRYEQLYQQNG 189
+ IG+E+ V W +L +I E + R+ P++ ++ E+++++ G
Sbjct: 169 RLIVVGGGVIGLELG---VVWHRLGAEVIVLE--YMDRIL-PTMDLEVSRAAERVFKKQG 222
Query: 190 VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNS-S 246
+ G + + + G A V+LE G ++AD +++ +G +P E GL++
Sbjct: 223 LTIRTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDE 280
Query: 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT----ARVEHV 286
G I VD RTR+P I+AIGDV P+ + + A VEH+
Sbjct: 281 RGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHM 324
>pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGB|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 102/230 (44%), Gaps = 13/230 (5%)
Query: 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL-----LKYGSLIVATGCTASRFP 104
R + + GI+ + VT +D EK+ + K Y L++ATG P
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-XP 155
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
E G L GVH ++ + DA+ ++ +LE K + IG+E A V I
Sbjct: 156 EWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEXAETFVELGKKVRXI 215
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+H + ++ A+ + ++ ++ + ++K + RV AV+ + G T A
Sbjct: 216 ERNDH-IGTIYDGDXAEYIYKEADKHHIEILTNENVKAFKGNE--RVEAVETDKG-TYKA 271
Query: 223 DTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 271
D +++ +G KP E + ++ G I+V+ +T + ++A GD A
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYXQTNVQDVYAAGDCAT 321
>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
pdb|4GCM|B Chain B, Crystal Structure Of A Thioredoxine Reductase (Trxb) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A
Resolution
Length = 312
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 106/242 (43%), Gaps = 22/242 (9%)
Query: 36 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVA 95
PGF G + E K+ G Y D + D + +I K L ++I+A
Sbjct: 52 NFPGFEXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIA 111
Query: 96 TGCTASRFPEKIGGYLPGVHYI--RDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAV 153
TG +KIG +PG + R V+ + K K+ +E
Sbjct: 112 TGAEY----KKIG--VPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLT 165
Query: 154 GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
+ TI+ + L QR+ ++ ++ + + F+ ++K++ DG+V +V
Sbjct: 166 KFADKVTIVHRRDELRAQRILQ-------DRAFKNDKIDFIWSHTLKSINE-KDGKVGSV 217
Query: 213 KL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 267
L +DGS T +AD + I IG KP +PF+ +G+ + VG I T +PGIFA G
Sbjct: 218 TLTSTKDGSEETHEADGVFIYIGXKPLTAPFKDLGITNDVGYIVTKDDXTTSVPGIFAAG 277
Query: 268 DV 269
DV
Sbjct: 278 DV 279
>pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
pdb|3NTD|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C531s Mutant
Length = 565
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 107/247 (43%), Gaps = 34/247 (13%)
Query: 51 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G P H +R++ D D ++ +++ + +IG+E+ + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
L ++ TP +A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
+K L +G ++ D +++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 262 GIFAIGD 268
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A T+I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A T+I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 69/162 (42%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A T+I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAAAVGWKLDTTII----FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A T+I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +AR+ + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNL 313
>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|B Chain B, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|C Chain C, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOI|D Chain D, Trypanothione Reductase From Trypanosoma Brucei
pdb|2WOV|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOV|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Bound
Nadp.
pdb|2WOW|A Chain A, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|B Chain B, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|C Chain C, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WOW|D Chain D, Trypanosoma Brucei Trypanothione Reductase With Nadp And
Trypanothione Bound
pdb|2WP5|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP5|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00065414)
pdb|2WP6|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WP6|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00071494)
pdb|2WPC|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPC|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073357)
pdb|2WPE|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPE|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00073359)
pdb|2WPF|A Chain A, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|B Chain B, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|C Chain C, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
pdb|2WPF|D Chain D, Trypanosoma Brucei Trypanothione Reductase In Complex With
3,4-Dihydroquinazoline Inhibitor (Ddd00085762)
Length = 495
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
N+L+ R F ++ + + NG++ + + + +DG V E G T+D D +
Sbjct: 226 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 284
Query: 226 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 278
++ IG P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + +
Sbjct: 285 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 344
Query: 279 RTARVEHV--------DHARQSA 293
A V+ V DH R ++
Sbjct: 345 GAALVDTVFGNKPRKTDHTRVAS 367
>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei
pdb|2WBA|B Chain B, Properties Of Trypanothione Reductase From T. Brucei
Length = 492
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225
N+L+ R F ++ + + NG++ + + + +DG V E G T+D D +
Sbjct: 223 NNLILRGFDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGS-KHVTFESGKTLDVDVV 281
Query: 226 VIGIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA----AFPLKMYD 278
++ IG P + + VG+ + GG+QVD RT +P I+AIGD+ P+ + +
Sbjct: 282 MMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINE 341
Query: 279 RTARVEHV--------DHARQSA 293
A V+ V DH R ++
Sbjct: 342 GAALVDTVFGNKPRKTDHTRVAS 364
>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
pdb|4DNA|B Chain B, Crystal Structure Of Putative Glutathione Reductase From
Sinorhizobium Meliloti 1021
Length = 463
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 89/200 (44%), Gaps = 25/200 (12%)
Query: 82 NSGKLLKYGSLIVATGCTASRFPEKIGGY------LPGVHYI---RDVADADALISSLEK 132
N+ KLL G + TA R +GG+ LPG + D AL S+
Sbjct: 121 NTVKLLASGKTV-----TAERIVIAVGGHPSPHDALPGHELCITSNEAFDLPALPESILI 175
Query: 133 AKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 192
A YI +E A G + TT+I+ +L R F + ++ G++
Sbjct: 176 A------GGGYIAVEFANIFHGLGVKTTLIYRGKEILSR-FDQDXRRGLHAAXEEKGIRI 228
Query: 193 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGG 249
+ I+++ A +DGR A + G + AD + + +G P + E G+ ++ +G
Sbjct: 229 LCEDIIQSVSADADGRRVATTXKHGEIV-ADQVXLALGRXPNTNGLGLEAAGVRTNELGA 287
Query: 250 IQVDGQFRTRMPGIFAIGDV 269
I VD RT PGI+A+GDV
Sbjct: 288 IIVDAFSRTSTPGIYALGDV 307
>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase
pdb|1H6V|B Chain B, Mammalian Thioredoxin Reductase
pdb|1H6V|C Chain C, Mammalian Thioredoxin Reductase
pdb|1H6V|D Chain D, Mammalian Thioredoxin Reductase
pdb|1H6V|E Chain E, Mammalian Thioredoxin Reductase
pdb|1H6V|F Chain F, Mammalian Thioredoxin Reductase
Length = 499
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 200 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR V A TI+ +T+++ +G E VG +N G I
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 252 VDGQFRTRMPGIFAIGDVAAFPLKM 276
V + +T +P I+AIGD+ L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAN|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Reduced C-Terminal Tail
pdb|3EAO|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|B Chain B, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|C Chain C, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|D Chain D, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|E Chain E, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
pdb|3EAO|F Chain F, Crystal Structure Of Recombinant Rat Selenoprotein
Thioredoxin Reductase 1 With Oxidized C-Terminal Tail
Length = 499
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 13/145 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ I+
Sbjct: 200 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPTKIE 257
Query: 200 NLEAGSDGR--VAAVKLEDGSTIDA--DTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR V A TI+ +T+++ +G E VG +N G I
Sbjct: 258 QIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVGRDSCTRTIGLETVGVKINEKTGKIP 317
Query: 252 VDGQFRTRMPGIFAIGDVAAFPLKM 276
V + +T +P I+AIGD+ L++
Sbjct: 318 VTDEEQTNVPYIYAIGDILEGKLEL 342
>pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas
Aeruginosa.
pdb|2V3B|A Chain A, Crystal Structure Of The Electron Transfer Complex
Rubredoxin - Rubredoxin Reductase From Pseudomonas
Aeruginosa
Length = 384
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 69 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128
VT ID Q + ++ +Y L++A G R P + G ++ I D+ D
Sbjct: 83 VTGIDPGHQRIWIGEEEV-RYRDLVLAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQ 140
Query: 129 SLEKAKKXXXXXXXYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186
+ ++ IG E A ++ G++LD ++ P ++ L P+ A+ + +
Sbjct: 141 AAAGKRRVLLLGAGLIGCEFANDLSSGGYQLD--VVAPCEQVMPGLLHPAAAKAVQAGLE 198
Query: 187 QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 246
GV+F G + +L+ +G A L DG I D +V +G +P GL +
Sbjct: 199 GLGVRFHLGPVLASLKKAGEGLEA--HLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN 256
Query: 247 VGGIQVDGQFRTRMPGIFAIGDVA 270
G I VD RT I+A+GD A
Sbjct: 257 RG-IVVDRSLRTSHANIYALGDCA 279
>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BC1|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox
pdb|2BCP|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
pdb|2BCP|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: C44s Nox With Azide
Length = 490
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 54 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 106
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 107 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 158
L + +++ ++ +I+ LE K+ YIG+E+A A +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218
+I + L + L + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 219 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 278 DRTAR 282
D R
Sbjct: 332 DNATR 336
>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
pdb|2BC0|B Chain B, Structural Analysis Of Streptococcus Pyogenes Nadh
Oxidase: Wild-Type Nox
Length = 490
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 24/245 (9%)
Query: 54 EWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFPEK---- 106
E + G ++ + PV SID + +T L+ + Y LI ATG P K
Sbjct: 100 EELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEI 159
Query: 107 ------IGGYLPGVHYIRDVADADALISSLEKA--KKXXXXXXXYIGMEVAAAAVGWKLD 158
L + +++ ++ +I+ LE K+ YIG+E+A A +
Sbjct: 160 KEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKE 219
Query: 159 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218
+I + L + L + +++G++ G ++K E +G+V + + D +
Sbjct: 220 VVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVK--EVAGNGKVEKI-ITDKN 276
Query: 219 TIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
D D +++ +G +P + ++ L + G V+ + T +PG++AIGD A +Y
Sbjct: 277 EYDVDMVILAVGFRPNTTLGNGKIDLFRN-GAFLVNKRQETSIPGVYAIGDCAT----IY 331
Query: 278 DRTAR 282
D R
Sbjct: 332 DNATR 336
>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
pdb|2HQM|B Chain B, Crystal Structure Of Glutathione Reductase Glr1 From The
Yeast Saccharomyces Cerevisiae
Length = 479
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 15/202 (7%)
Query: 71 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 130
+++++K+ N+ ++ ++VATG A FPE I G+ G D+D
Sbjct: 134 NVEVQKRD---NTTEVYSANHILVATGGKAI-FPENIPGFELG-------TDSDGFFRLE 182
Query: 131 EKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 190
E+ KK YIG+E+A G +T ++ +L R F + Y + G+
Sbjct: 183 EQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGI 241
Query: 191 KFVKGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSP-FERVGLN-SSV 247
K + I +E + + + D +I D D ++ IG K + E VG+ +S
Sbjct: 242 NVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH 301
Query: 248 GGIQVDGQFRTRMPGIFAIGDV 269
I D T +P I+++GDV
Sbjct: 302 DQIIADEYQNTNVPNIYSLGDV 323
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 11/162 (6%)
Query: 143 YIGMEVAAA--AVGWKLDTTIIF--PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E A A G K+ I P L + FT L + E N + G ++
Sbjct: 159 YIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEA----NNITIATGETV 214
Query: 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT 258
+ E DGRV V + D + DAD +V+ +G +P + + G I+ D RT
Sbjct: 215 ERYEG--DGRVQKV-VTDKNAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDEYMRT 271
Query: 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300
P +FA+GD D + +A + + +K L
Sbjct: 272 SEPDVFAVGDATLIKYNPADTEVNIALATNAMKQGRFAVKNL 313
>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZ0|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I (Secys
498 Cys)
pdb|2ZZB|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|B Chain B, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|C Chain C, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZB|D Chain D, Crystal Structure Of Human Thioredoxin Reductase I And
Terpyridine Platinum(Ii)
pdb|2ZZC|A Chain A, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|B Chain B, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|C Chain C, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
pdb|2ZZC|D Chain D, Crystal Structure Of Nadp(H):human Thioredoxin Reductase I
Length = 513
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 214 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 271
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 272 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 331
Query: 252 VDGQFRTRMPGIFAIGDV 269
V + +T +P I+AIGD+
Sbjct: 332 VTDEEQTNVPYIYAIGDI 349
>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|B Chain B, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|C Chain C, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|D Chain D, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|E Chain E, X-Ray Structure Of Human Thioredoxin Reductase 1
pdb|2J3N|F Chain F, X-Ray Structure Of Human Thioredoxin Reductase 1
Length = 519
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 252 VDGQFRTRMPGIFAIGDV 269
V + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355
>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|A Chain A, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|B Chain B, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 519
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 220 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 277
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 278 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337
Query: 252 VDGQFRTRMPGIFAIGDV 269
V + +T +P I+AIGD+
Sbjct: 338 VTDEEQTNVPYIYAIGDI 355
>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|B Chain B, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|C Chain C, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|D Chain D, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|E Chain E, Crystal Structure Of Human Thioredoxin Reductase 1
pdb|2CFY|F Chain F, Crystal Structure Of Human Thioredoxin Reductase 1
Length = 521
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG---ASIK 199
Y+ +E A G LD T++ +L R F +A + + +++G+KF++ ++
Sbjct: 222 YVALECAGFLAGIGLDVTVMV--RSILLRGFDQDMANKIGEHMEEHGIKFIRQFVPIKVE 279
Query: 200 NLEAGSDGRVAAVKLEDGSTI----DADTIVIGIGAKPTVSP--FERVG--LNSSVGGIQ 251
+EAG+ GR+ V S + +T+++ IG E VG +N G I
Sbjct: 280 QIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 339
Query: 252 VDGQFRTRMPGIFAIGDV 269
V + +T +P I+AIGD+
Sbjct: 340 VTDEEQTNVPYIYAIGDI 357
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
++++ATG + FP G+ D + SL+K +K IG+E+
Sbjct: 164 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 215
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
+ D T + H+ +++ ++++ Q+ G KF + SDG++
Sbjct: 216 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 275
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
V +E S I D +++ IG +P E +G+ G I V+ +F+T++P
Sbjct: 276 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 334
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 335 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 376
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
++++ATG + FP G+ D + SL+K +K IG+E+
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
+ D T + H+ +++ ++++ Q+ G KF + SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
V +E S I D +++ IG +P E +G+ G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 91 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVA 149
++++ATG + FP G+ D + SL+K +K IG+E+
Sbjct: 143 NILIATGSEVTPFP--------GITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELG 194
Query: 150 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209
+ D T + H+ +++ ++++ Q+ G KF + SDG++
Sbjct: 195 SVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKI 254
Query: 210 AAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMP 261
V +E S I D +++ IG +P E +G+ G I V+ +F+T++P
Sbjct: 255 D-VSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQTKIP 313
Query: 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYLP 312
I+AIGDV A P+ + A C++ + H Y+ +P
Sbjct: 314 NIYAIGDVVAGPMLAHK----------AEDEGIICVEGMAGGAVHIDYNCVP 355
>pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
pdb|3NTA|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase
Length = 574
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 51 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G P H +R++ D D ++ +++ + +IG+E + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
L ++ TP A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
+K L +G ++ D ++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 262 GIFAIGD 268
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
pdb|3NT6|B Chain B, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent
Persulfide Reductase C43sC531S DOUBLE MUTANT
Length = 574
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 34/247 (13%)
Query: 51 QTPEWYKEK-GIEMIYQDPVTSID-----IEKQTLITNSGKLLKYGSLIVATGCTASRFP 104
QTPE +K + +E+ + V +ID + + L+ S Y +L+++ G A P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGA-APIVP 120
Query: 105 EKIGGYLPGVHYIRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G P H +R++ D D ++ +++ + +IG+E + + TT++
Sbjct: 121 PIPGVDNPLTHSLRNIPDXDRILQTIQXNNVEHATVVGGGFIGLEXXESLHHLGIKTTLL 180
Query: 163 FPENHLLQRLFTP---SLAQRYEQLYQQNGVKFVKGASIKNLE-----------AGSDGR 208
L ++ TP A Q + GV G ++ + AG D
Sbjct: 181 ----ELADQVXTPVDREXAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTA 236
Query: 209 VAAVK------LEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 261
+K L +G ++ D ++ IG +P GL +GGI+V+ +T P
Sbjct: 237 HQHIKGHLSLTLSNGELLETDLLIXAIGVRPETQLARDAGLAIGELGGIKVNAXXQTSDP 296
Query: 262 GIFAIGD 268
I+A+GD
Sbjct: 297 AIYAVGD 303
>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|B Chain B, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|C Chain C, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
pdb|1NDA|D Chain D, The Structure Of Trypanosoma Cruzi Trypanothione Reductase
In The Oxidized And Nadph Reduced State
Length = 491
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 282 RVEHV--------DHAR 290
V+ V DH R
Sbjct: 344 LVDTVFGTNPRKTDHTR 360
>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
pdb|1BZL|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With Trypanothione, And The
Structure- Based Discovery Of New Natural Product
Inhibitors
Length = 486
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 225 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 283
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 284 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 343
Query: 282 RVEHV--------DHAR 290
V+ V DH R
Sbjct: 344 LVDTVFGTTPRKTDHTR 360
>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
pdb|1GXF|B Chain B, Crystal Structure Of Trypanosoma Cruzi Trypanothione
Reductase In Complex With The Inhibitor Quinacrine
Mustard
Length = 492
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 226 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 284
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 285 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 344
Query: 282 RVEHV--------DHAR 290
V+ V DH R
Sbjct: 345 LVDTVFGTTPRKTDHTR 361
>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
pdb|1AOG|B Chain B, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form)
Length = 485
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 224 MILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGS-KSVTFESGKKMDFDLVMM 282
Query: 228 GIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA----FPLKMYDRTA 281
IG P + G+ GG+QVD RT + I+AIGDV P+ + + A
Sbjct: 283 AIGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAA 342
Query: 282 RVEHV--------DHAR 290
V+ V DH R
Sbjct: 343 LVDTVFGTTPRKTDHTR 359
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 15/198 (7%)
Query: 74 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 134 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193
++ YI +E+A G T + F H R F P +++ ++ G +
Sbjct: 168 ERVAVVGAGYIAVELAGVINGLGAKTHL-FVRKHAPLRSFDPMISETLVEVMNAEGPQLH 226
Query: 194 KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGG-I 250
A K + +DG + ++LEDG + D ++ IG +P E G+ ++ G I
Sbjct: 227 TNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYI 285
Query: 251 QVDGQFRTRMPGIFAIGD 268
VD T + GI+A+GD
Sbjct: 286 VVDKYQNTNIEGIYAVGD 303
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 120
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 121 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 178 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 230
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 290
Query: 282 RV 283
V
Sbjct: 291 SV 292
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 97/242 (40%), Gaps = 22/242 (9%)
Query: 52 TPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPE 105
TPE +Y K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 62 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSL-- 119
Query: 106 KIGGYLPGVHY-IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 162
G+ + + +R++ D DA+ ++ + K Y+ +EV L T+I
Sbjct: 120 ---GFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 176
Query: 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222
+ + +L + Q + + + I + + + G
Sbjct: 177 HRSDKI-NKLMDADMNQPILDELDKREIPYRLNEEINAINGNE------ITFKSGKVEHY 229
Query: 223 DTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
D I+ G+G P E + G I V+ +F T +P I+AIGD+A + D A
Sbjct: 230 DMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPA 289
Query: 282 RV 283
V
Sbjct: 290 SV 291
>pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From
Clostridium Acetobutylicum
Length = 385
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 112/274 (40%), Gaps = 46/274 (16%)
Query: 6 LCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIY 65
+ +++ E Y PY RP L + + K + + +WY++ I++I
Sbjct: 35 ITMINSEKYLPYYRPRLNE-----IIAKNKSIDDILI--------KKNDWYEKNNIKVIT 81
Query: 66 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA 125
+ TSID + + SG+ +KY LI+A+G A++ +P I + D
Sbjct: 82 SEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIK------VPHADEIFSLYSYDD 135
Query: 126 LISSLEKAK---KXXXXXXXYIGMEVAAAAV--GWKLDTTII--FPENHLLQRLFTPSLA 178
+ ++ K K +G+E+A A + G II +P L R L
Sbjct: 136 ALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLK 195
Query: 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238
+ ++L G+K ++ + + G I + ++ +G KP +
Sbjct: 196 DKLDRL----GIKIYTNSNFEEM---------------GDLIRSSCVITAVGVKPNLDFI 236
Query: 239 ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 272
+ + +S GI V+ T + I+A GDVA F
Sbjct: 237 KDTEI-ASKRGILVNDHMETSIKDIYACGDVAEF 269
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|B Chain B, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|C Chain C, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
pdb|1DXL|D Chain D, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 27/241 (11%)
Query: 80 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKXXX 138
I ++K +I+ATG LPGV + + + ++ E KK
Sbjct: 131 IEGENTVVKGKHIIIATGSDVKS--------LPGVTIDEKKIVSSTGALALSEIPKKLVV 182
Query: 139 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
YIG+E+ + + T++ + ++ + + +++++ ++ G+KF +
Sbjct: 183 IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM-DAEIRKQFQRSLEKQGMKFKLKTKV 241
Query: 199 KNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 252
++ DG V+ G + I+AD +++ G P S +++G+ + +G I V
Sbjct: 242 VGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILV 301
Query: 253 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT-YDYL 311
+ +F T + G++AIGDV P+ + A + C++ L H YD +
Sbjct: 302 NERFSTNVSGVYAIGDVIPGPMLAHK----------AEEDGVACVEYLAGKVGHVDYDKV 351
Query: 312 P 312
P
Sbjct: 352 P 352
>pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICR|B Chain B, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd
pdb|3ICS|A Chain A, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICS|B Chain B, Crystal Structure Of Partially Reduced Bacillus Anthracis
Coadr-Rhd
pdb|3ICT|A Chain A, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
pdb|3ICT|B Chain B, Crystal Structure Of Reduced Bacillus Anthracis Coadr-Rhd
Length = 588
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 117 IRDVADADALISSLE--KAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 174
+R+V D D + + ++ K + +IG+E ++ T++ N + +
Sbjct: 169 LRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEXVENLRERGIEVTLVEXANQVXPPIDY 228
Query: 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234
A +E + + V+ V + LE A V+L+ GS I D +++ IG +P
Sbjct: 229 EXAAYVHEHX-KNHDVELVFEDGVDALEENG----AVVRLKSGSVIQTDXLILAIGVQPE 283
Query: 235 VSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGD 268
S + GL V G I+V+ +F+T P I+AIGD
Sbjct: 284 SSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGD 318
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 86 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 144
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 145 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 196
Query: 145 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204
+E A G LDTT++ L R F ++ + + +G +F+KG +++
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 254
Query: 205 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDGQ 255
++ V ED + T DT++ IG P E+ G++++ I VD Q
Sbjct: 255 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313
Query: 256 FRTRMPGIFAIGDVA 270
T +P I+AIGDVA
Sbjct: 314 EATSVPHIYAIGDVA 328
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 86 LLKYGSLIVATGCTASRFPEKIGGYLP-GVHYIRDVADADALISSLEKAKKXXXXXXXYI 144
LL +++ATG R+P ++ G L G+ +D + E K Y+
Sbjct: 171 LLSAEHIVIATG-GRPRYPTQVKGALEYGI-------TSDDIFWLKESPGKTLVVGASYV 222
Query: 145 GMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204
+E A G LDTT++ L R F ++ + + +G +F+KG +++
Sbjct: 223 ALECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLKGCVPSHIKKL 280
Query: 205 SDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG--IQVDGQ 255
++ V ED + T DT++ IG P E+ G++++ I VD Q
Sbjct: 281 PTNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 339
Query: 256 FRTRMPGIFAIGDVA 270
T +P I+AIGDVA
Sbjct: 340 EATSVPHIYAIGDVA 354
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 205 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 260
S+G + V L DGS T++AD ++I IG K + P R L + VD +T +
Sbjct: 231 SNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSV 290
Query: 261 PGIFAIGDVAAFPLKM 276
G++A GD+A +P K+
Sbjct: 291 DGLYAAGDIAYYPGKL 306
>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione
Reductase
Length = 500
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 6/163 (3%)
Query: 111 LPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170
P V I + +D + ++++KK YI +E+ +D+ I N +L+
Sbjct: 155 FPPVKGIENTISSDEFFN-IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 213
Query: 171 RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGI 229
+ F S+ E ++N + V A + ++ SD ++ + L DG + D ++ +
Sbjct: 214 K-FDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-IHLSDGRIYEHFDHVIYCV 271
Query: 230 GAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
G P E++ + ++ I VD RT + I+A+GD
Sbjct: 272 GRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCC 314
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 27/204 (13%)
Query: 74 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133
++ +TL N G+ + +++ATG S P+ +PGV Y D+D +
Sbjct: 118 VDAKTLEVN-GETITADHILIATGGRPSH-PD-----IPGVEY---GIDSDGFFALPALP 167
Query: 134 KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPSLAQRYEQLYQQ 187
++ YIG+E+ G T HL + F P +++ ++
Sbjct: 168 ERVAVVGAGYIGVELGGVINGLGAKT-------HLFEMFDAPLPSFDPMISETLVEVMNA 220
Query: 188 NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNS 245
G + A K + +DG + ++LEDG + D ++ IG +P E G+ +
Sbjct: 221 EGPQLHTNAIPKAVVKNTDGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT 279
Query: 246 SVGG-IQVDGQFRTRMPGIFAIGD 268
+ G I VD T + GI+A+GD
Sbjct: 280 NEKGYIVVDKYQNTNIEGIYAVGD 303
>pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide
Dehydrogenase Complexed With Nad+ At 2.45 Angstroms
Resolution
Length = 458
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 202
YIG+E+ A +++ +L + L + ++ G+ G S++ E
Sbjct: 181 YIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHLGHSVEGYE 239
Query: 203 AG----SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG--IQVDGQF 256
G +DG+ ++LE AD +++ +G +P F L+ + G I +D +
Sbjct: 240 NGCLLANDGKGGQLRLE------ADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERC 293
Query: 257 RTRMPGIFAIGDVAAFPLKMYDRTARVEHV 286
+T M ++AIGDVA P+ + A+ E V
Sbjct: 294 QTSMHNVWAIGDVAGEPMLAHRAMAQGEMV 323
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI- 107
T E + + I+++ V + D+E Q + + Y LI+ATG AS+F +I
Sbjct: 64 TEEELRRQKIQLLLNREVVAXDVENQLIAWTRKEEQQWYSYDKLILATG--ASQFSTQIR 121
Query: 108 GGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENH 167
G + + ++ A A + LE ++ IG E V K + +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGXEAIDFLVKXKKTVHVFESLEN 181
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
LL + F ++ ++ V F ++ +E ++G V ++ I D+ +
Sbjct: 182 LLPKYFDKEXVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQE---ISCDSGIF 238
Query: 228 GIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 268
+ P ++ ++ + I VD +T +P +FAIGD
Sbjct: 239 ALNLHPQLAYLDKKIQRNLDQTIAVDAYLQTSVPNVFAIGD 279
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLEDGSTIDADTIVIGIGAKP 233
+A++ ++ + G+ F GA + DG VK + +T+DA+ ++I G KP
Sbjct: 241 VAKQLQRXLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKP 300
Query: 234 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 273
+ + G+ S G +++D F+T + G++AIGDV P
Sbjct: 301 STDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
>pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
pdb|3L8K|B Chain B, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From
Sulfolobus Solfataricus
Length = 466
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 150
+I+A+G ++ LPGV Y D +S K + YIG+E+A+
Sbjct: 136 MIIASGAETAKLR------LPGVEYCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIAS 189
Query: 151 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210
+ T II + L L + + + N +KF + + ++ D
Sbjct: 190 IFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLN-IKF--NSPVTEVKKIKDDEYE 246
Query: 211 AV-KLEDGS--TIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDGQFRTRMPGIFAI 266
+ +DGS +I +++V+ G +P + R +GL+ S GI VD +T +P +FA
Sbjct: 247 VIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFAT 306
Query: 267 GD 268
GD
Sbjct: 307 GD 308
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
+D + ++ K+ YIG+E+A + + T++ E+ LL + F P L+
Sbjct: 156 SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLA 214
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-DTIVIGIGAKPTVSPF--E 239
+ G++ ++ LE D + + +DG+ ++ D+++ +G P E
Sbjct: 215 ENMHAQGIETHLEFAVAALE--RDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLE 272
Query: 240 RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
G+ S G + D T +PG++A+GD+
Sbjct: 273 AAGIEVQSNGMVPTDAYQNTNVPGVYALGDI 303
>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
pdb|4B1B|B Chain B, Crystal Structure Of Plasmodium Falciparum Oxidised
Thioredoxin Reductase At 2.9 Angstrom
Length = 542
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 73 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132
D+ K+ +T KY +++ATGC P+ + G ++++ I SL+K
Sbjct: 177 DLSKEETVTG-----KY--ILIATGCRP-HIPDDVEG-------AKELSITSDDIFSLKK 221
Query: 133 A-KKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 191
K Y+ +E + D T+ ++ R F A + + ++ GV
Sbjct: 222 DPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--IVLRGFDQQCAVKVKLYMEEQGVM 279
Query: 192 FVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE----RVGLNSSV 247
F G K L D + V+ D ++ DT++ IG K + + +N S
Sbjct: 280 FKNGILPKKLTKMDDKIL--VEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSN 337
Query: 248 GGIQVDGQFRTRMPGIFAIGDVA 270
I D T +P IFA+GDVA
Sbjct: 338 NKIIADHLSCTNIPSIFAVGDVA 360
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGA 231
+A+ ++ ++ G+ F + + + D V + +ED T ++A+ +++ +G
Sbjct: 226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGR 285
Query: 232 KPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 274
+P ++ E++GL G + +D QF ++ P I +GDV P+
Sbjct: 286 RPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM 331
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum Tryopanothione
Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 150
+++ATG +P ++G +PG + + +A LE A K+ YI +E A
Sbjct: 176 ILIATG----SWPTRLG--VPGDEFC--ITSNEAFY--LEDAPKRMLCVGGGYIAVEFAG 225
Query: 151 AAVGWK-----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205
G+K +D + L+ R F + + + NG++ + +
Sbjct: 226 IFNGYKPCGGYVD---LCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
Query: 206 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE------RVGLNSSVGGIQVDGQFRTR 259
DG V DG+ D D +++ IG P + R G N G +QVD +T
Sbjct: 283 DGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKN---GAVQVDAYSKTS 338
Query: 260 MPGIFAIGDVAA----FPLKMYDRTARVEHV 286
+ I+AIGDV P+ + + A VE V
Sbjct: 339 VDNIYAIGDVTNRVMLTPVAINEGAAFVETV 369
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKXXXXXXXYIGMEVAA 150
+++ATG +P ++G +PG + + +A LE A K+ YI +E A
Sbjct: 176 ILIATG----SWPTRLG--VPGDEFC--ITSNEAFY--LEDAPKRMLCVGGGYIAVEFAG 225
Query: 151 AAVGWK-----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205
G+K +D + L+ R F + + + NG++ + +
Sbjct: 226 IFNGYKPCGGYVD---LCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNE 282
Query: 206 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE------RVGLNSSVGGIQVDGQFRTR 259
DG V DG+ D D +++ IG P + R G N G +QVD +T
Sbjct: 283 DGS-NHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKN---GAVQVDAYSKTS 338
Query: 260 MPGIFAIGDVAA----FPLKMYDRTARVEHV 286
+ I+AIGDV P+ + + A VE V
Sbjct: 339 VDNIYAIGDVTNRVMLTPVAINEGAAFVETV 369
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 224 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 282
Query: 228 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
IG P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 283 AIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 224 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 282
Query: 228 GIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
IG P E+ G+ + G I+VD +T + I+AIGDV
Sbjct: 283 AIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 327
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 160 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA---VKLED 216
T++ ++H+L A E+ + + GV+ KN A S R A V + D
Sbjct: 209 TVVASQDHVLP-YEDADAALVLEESFAERGVRL-----FKNARAASVTRTGAGVLVTMTD 262
Query: 217 GSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAF 272
G T++ ++ IG+ P S ERVG+ G + VD RT GI+A GD
Sbjct: 263 GRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGL 321
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 173 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 230
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-----DTIVIGIGAKPTVSP 237
++ G+ F++ ++E DG++ VK ++ T + DT++ IG K V
Sbjct: 231 ASMEERGIPFLRKTVPLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDD 289
Query: 238 FE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 269
G+ I VD Q T + I+A+GD+
Sbjct: 290 LNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 323
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila
Melanogaster
Length = 488
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 234
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-----DTIVIGIGAKPTVSP 237
++ G+ F++ ++E DG++ VK ++ T + DT++ IG K V
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDD 293
Query: 238 FE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 269
G+ I VD Q T + I+A+GD+
Sbjct: 294 LNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 10/154 (6%)
Query: 123 ADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 182
+D L S + K YIG+E A G + T++ ++ R F +A+
Sbjct: 177 SDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMV--RSIVLRGFDQQMAELVA 234
Query: 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA-----DTIVIGIGAKPTVSP 237
++ G+ F++ ++E DG++ VK ++ T + DT++ IG K V
Sbjct: 235 ASMEERGIPFLRKTVPLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGLVDD 293
Query: 238 FE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 269
G+ I VD Q T + I+A+GD+
Sbjct: 294 LNLPNAGVTVQKDKIPVDSQEATNVANIYAVGDI 327
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 225 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 283
Query: 228 GIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
IG P + + G+ + G I+VD +T + I+AIGDV
Sbjct: 284 AIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 168 LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227
++ R F L ++ + + NG+ + + +DG V E G+ D D +++
Sbjct: 225 MILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVV-FESGAEADYDVVML 283
Query: 228 GIGAKPTVSPFE--RVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 269
IG P + + G+ + G I+VD +T + I+AIGDV
Sbjct: 284 AIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDV 328
>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
pdb|3CTY|B Chain B, Crystal Structure Of T. Acidophilum Thioredoxin Reductase
Length = 319
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTV 235
Y Q ++ + ++ A + + G +V VK +D +T I+ D + I +G P
Sbjct: 196 YVQEIKKRNIPYIMNAQVTEI-VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQT 254
Query: 236 SPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 271
S + G+ G I VD + RT +PG++A GDV +
Sbjct: 255 SFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTS 291
>pdb|3KD9|A Chain A, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|B Chain B, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
pdb|3KD9|C Chain C, Crystal Structure Of Pyridine Nucleotide Disulfide
Oxidoreductase From Pyrococcus Horikoshii
Length = 449
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 10/223 (4%)
Query: 53 PEWY-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGY 110
PE + K++GI++ V +D + N G K ++ L+ A G + + P G
Sbjct: 65 PEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGAS-PQVPAIEGVN 123
Query: 111 LPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPENHL 168
L GV DA A+ +EK K YIG+E+A A + T+I +
Sbjct: 124 LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 183
Query: 169 LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228
L+R F + E+ +++ ++ ++K + RV V + D A+ +++
Sbjct: 184 LRRSFDKEVTDILEEKLKKHVNLRLQEITMK---IEGEERVEKV-VTDAGEYKAELVILA 239
Query: 229 IGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 270
G KP + +++G+ G I + + +T + ++A GDVA
Sbjct: 240 TGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVA 282
>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
pdb|2ZBW|B Chain B, Crystal Structure Of Thioredoxin Reductase-Like Protein
From Thermus Thermophilus Hb8
Length = 335
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 220 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 276
++ D ++I G + P GL I+VD T +PG++A GD+ +P K+
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTXATSIPGVYACGDIVTYPGKL 295
>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From
Masc Data
Length = 482
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 223 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+ +
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAH-- 333
Query: 280 TARVEHVDHARQSAQHC 296
+ H H +A++C
Sbjct: 334 --KAVHEGHV--AAENC 346
>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 223 DTIVIGIGAKPT--VSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
D +++ G P + E+ G+ + G I+VD Q RT +P I+AIGD+ P+ +
Sbjct: 276 DAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAH-- 333
Query: 280 TARVEHVDHARQSAQHC 296
+ H H +A++C
Sbjct: 334 --KAVHEGHV--AAENC 346
>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|B Chain B, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|C Chain C, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8P|D Chain D, Structure Of Sulfolobus Solfataricus Trxr-B3
pdb|3F8R|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
pdb|3F8R|D Chain D, Crystal Structure Of Sulfolobus Solfataricus Thioredoxin
Reductase B3 In Complex With Two Nadp Molecules
Length = 323
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 236
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 237 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 271
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|B Chain B, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|C Chain C, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
pdb|3F8D|D Chain D, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase
Mutant C147a
Length = 323
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVS 236
E + ++ V+FV + +K ++ D V V +E+ T ++ + + I IG P
Sbjct: 197 ETVKKKPNVEFVLNSVVKEIKG--DKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTD 254
Query: 237 PFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAA 271
+ G+ + G I+VD RT +PG+FA GD +
Sbjct: 255 FAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTS 290
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 151
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 207
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 208 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 257
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 258 TRMPGIFAIGDVAA 271
T + ++AIGD+ A
Sbjct: 423 TTVSNVYAIGDINA 436
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 151
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 207
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 208 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 257
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 258 TRMPGIFAIGDVAA 271
T + ++AIGD+ A
Sbjct: 423 TTVSNVYAIGDINA 436
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 79/194 (40%), Gaps = 24/194 (12%)
Query: 92 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAA 151
+I+ATG ++PE G G+ +D L S K Y+ +E A
Sbjct: 253 IILATG-ERPKYPEIPGAVEYGI-------TSDDLFSLPYFPGKTLVIGASYVALECAGF 304
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA---SIKNLE-AGSDG 207
D T++ +L R F +A++ + +GVKF K IK L+ ++
Sbjct: 305 LASLGGDVTVMV--RSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTEN 362
Query: 208 RVAAVKLEDGSTIDA-------DTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQVDGQFR 257
+ L G D +T++ +G +P +S E VG+ G + +
Sbjct: 363 NKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQ 422
Query: 258 TRMPGIFAIGDVAA 271
T + ++AIGD+ A
Sbjct: 423 TTVSNVYAIGDINA 436
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 223 DTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 277
D +++ +G +P + + +S V G I VD +T +PG+FAIGDV M
Sbjct: 270 DKLIVAVGRRPVTTDL--LAADSGVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGA--ML 325
Query: 278 DRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 312
A E V A + A H AQ + YD +P
Sbjct: 326 AHKASEEGVMVAERIAGH------KAQMN-YDLIP 353
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 87 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 145
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 146 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 198
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 199 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 257
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 258 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 317
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 318 EFQNTNVKGIYAVGDVCGKAL 338
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNXTEELENAGVEVLKFSQVKEVKK 256
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDXLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 85 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 143
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 144 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 196
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 197 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 255
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 256 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 315
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 316 EFQNTNVKGIYAVGDVCGKAL 336
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|3T2Y|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
His132ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
Length = 434
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 49/131 (37%), Gaps = 37/131 (28%)
Query: 153 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 50 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 88
Query: 213 KLEDGSTIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQ----VDGQFRT--------R 259
L DG+T+ D ++I G K FE V G + G +Q VD R R
Sbjct: 89 TLADGNTVHYDYLMIATGPKLA---FENVPGSDPHEGPVQSICTVDAAERAFAEYQALLR 145
Query: 260 MPGIFAIGDVA 270
PG IG +A
Sbjct: 146 EPGPIVIGAMA 156
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 22/177 (12%)
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
IG+E+ + + T++ + L + +A+ +++ + G+K + GA + E
Sbjct: 191 IGLELGSVWARLGAEVTVLEAMDKFLPAV-DEQVAKEAQKILTKQGLKILLGARVTGTEV 249
Query: 204 GSDGRVAAVKLED--GSTIDA-DTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQ 255
+ + VK D G A D +++ +G +P + + +S V G I VD
Sbjct: 250 KN--KQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL--LAADSGVTLDERGFIYVDDY 305
Query: 256 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 312
T +PG++AIGDV M A E V A + A H AQ + YD +P
Sbjct: 306 CATSVPGVYAIGDVVRGA--MLAHKASEEGVVVAERIAGH------KAQMN-YDLIP 353
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 69 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 127
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 128 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 180
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 181 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 239
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 240 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 299
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 300 EFQNTNVKGIYAVGDVCGKAL 320
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 86 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 144
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 145 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 197
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 198 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 256
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 257 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 316
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 317 EFQNTNVKGIYAVGDVCGKAL 337
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 104/261 (39%), Gaps = 34/261 (13%)
Query: 39 GFHTCVGSGGERQTPE---WYKEKGIEMIYQDPVTSIDIE-----------KQTLITNSG 84
GF +C G R E Y + + IYQ+ +T IE + I SG
Sbjct: 69 GFPSCEGKFNWRVIKEKRDAYVSR-LNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG 127
Query: 85 KLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXY 143
K +++ATG S E +I G G+ +D E + Y
Sbjct: 128 KKYTAPHILIATGGMPSTPHESQIPGASLGI-------TSDGFFQLEELPGRSVIVGAGY 180
Query: 144 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203
I +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 181 IAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVKK 239
Query: 204 GSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 253
G V AV +L + I D D ++ IG P ++G+ + G I VD
Sbjct: 240 TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVD 299
Query: 254 GQFRTRMPGIFAIGDVAAFPL 274
T + GI+A+GDV L
Sbjct: 300 EFQNTNVKGIYAVGDVCGKAL 320
>pdb|3SXI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
pdb|3T14|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Disulfide
pdb|3T2K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ala Variant From Acidithiobacillus Ferrooxidans
With Bound Trisulfane
Length = 437
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 31/130 (23%)
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211
VGWK I FP H ++R +AQ EQ+ D
Sbjct: 52 GVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQN 90
Query: 212 VKLEDGSTIDADTIVIGIGAK----------PTVSPFERVGLNSSVGGIQVDGQFRTRMP 261
+ L DG+T+ D ++I G K P P + + + Q R P
Sbjct: 91 ITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSIATVDHAERAFAEYQALLREP 150
Query: 262 GIFAIGDVAA 271
G IG +A
Sbjct: 151 GPIVIGAMAG 160
>pdb|3SY4|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
pdb|3SYI|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Ser126ala Variant From Acidithiobacillus Ferrooxidans
Using 7.0 Kev Diffraction Data
Length = 437
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 21/81 (25%)
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211
VGWK I FP H ++R +AQ EQ+ D
Sbjct: 52 GVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQN 90
Query: 212 VKLEDGSTIDADTIVIGIGAK 232
+ L DG+T+ D ++I G K
Sbjct: 91 ITLADGNTVHYDYLMIATGPK 111
>pdb|3T2Z|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T2Z|B Chain B, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans
pdb|3T31|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With
Decylubiquinone
pdb|3SZ0|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Sodium
Selenide
pdb|3SZC|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans In Complex With Gold (I)
Cyanide
pdb|3T0K|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans With Bound Trisulfide And
Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 21/81 (25%)
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211
VGWK I FP H ++R +AQ EQ+ D
Sbjct: 52 GVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQN 90
Query: 212 VKLEDGSTIDADTIVIGIGAK 232
+ L DG+T+ D ++I G K
Sbjct: 91 ITLADGNTVHYDYLMIATGPK 111
>pdb|3SZW|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys128ser Variant From Acidithiobacillus Ferrooxidans In
Complex With Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 21/81 (25%)
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211
VGWK I FP H ++R +AQ EQ+ D
Sbjct: 52 GVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQN 90
Query: 212 VKLEDGSTIDADTIVIGIGAK 232
+ L DG+T+ D ++I G K
Sbjct: 91 ITLADGNTVHYDYLMIATGPK 111
>pdb|3SX6|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase
Cys356ala Variant From Acidithiobacillus Ferrooxidans
Complexed With Decylubiquinone
Length = 437
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 21/81 (25%)
Query: 152 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211
VGWK I FP H ++R +AQ EQ+ D
Sbjct: 52 GVGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQN 90
Query: 212 VKLEDGSTIDADTIVIGIGAK 232
+ L DG+T+ D ++I G K
Sbjct: 91 ITLADGNTVHYDYLMIATGPK 111
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 143 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLE 202
YI +E+A T+++ + +L R F ++ + + GV+ +K + +K ++
Sbjct: 182 YIAVEMAGILSALGSKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVEVLKFSQVKEVK 240
Query: 203 AGSDG----RVAAV--KLEDGSTI-DADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQV 252
G V AV +L + I D D ++ IG P ++G+ + G I V
Sbjct: 241 KTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV 300
Query: 253 DGQFRTRMPGIFAIGDVAAFPL 274
D T + GI+A+GDV L
Sbjct: 301 DEFQNTNVKGIYAVGDVCGKAL 322
>pdb|3SZF|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase H198a
Variant From Acidithiobacillus Ferrooxidans In Complex
With Bound Trisulfide And Decylubiquinone
Length = 437
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 153 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 53 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 91
Query: 213 KLEDGSTIDADTIVIGIGAK 232
L DG+T+ D ++I G K
Sbjct: 92 TLADGNTVHYDYLMIATGPK 111
>pdb|3KPK|A Chain A, Crystal Structure Of Sulfide:quinone Oxidoreductase From
Acidithiobacillus Ferrooxidans, C160a Mutant
Length = 434
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 21/80 (26%)
Query: 153 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212
VGWK I FP H ++R +AQ EQ+ D +
Sbjct: 50 VGWKERDDIAFPIRHYVERKGIHFIAQSAEQI---------------------DAEAQNI 88
Query: 213 KLEDGSTIDADTIVIGIGAK 232
L DG+T+ D ++I G K
Sbjct: 89 TLADGNTVHYDYLMIATGPK 108
>pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
pdb|3II4|B Chain B, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound
To A Triazaspirodimethoxybenzoyl Inhibitor
Length = 466
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 87 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGM 146
+ + + I+ATG +++R +PG +V + I S E K IGM
Sbjct: 135 VTFDNAIIATG-SSTRL-------VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGM 186
Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLF---TPSLAQRYEQLYQQNGVKFVKGASIKNL-E 202
E + +D TI+ L R +++ E+ +++ GV + ++++ +
Sbjct: 187 EFGYVLKNYGVDVTIV----EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIAD 242
Query: 203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTR 259
GS V K + A+ ++ IG P V + ++ G+ + I VD RT
Sbjct: 243 GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTN 302
Query: 260 MPGIFAIGDV 269
+ I+AIGDV
Sbjct: 303 VGHIYAIGDV 312
>pdb|3CIR|A Chain A, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
pdb|3CIR|M Chain M, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 229 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KFY|A Chain A, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1KFY|M Chain M, Quinol-fumarate Reductase With Quinol Inhibitor
2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
Length = 602
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 229 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|3P4R|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4R|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Glutarate
pdb|3P4P|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4P|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With Fumarate
pdb|3P4Q|A Chain A, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4Q|M Chain M, Crystal Structure Of Menaquinol:oxidoreductase In Complex
With Oxaloacetate
pdb|3P4S|A Chain A, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
pdb|3P4S|M Chain M, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
Complex With A 3-Nitropropionate Adduct
Length = 577
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 229 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|2B76|A Chain A, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
pdb|2B76|M Chain M, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
Length = 602
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 229 IGAKPTVSPFE-RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 279
+G P P R + ++GGI+ D TR+ G+FA+G+ ++ L +R
Sbjct: 340 VGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANR 391
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 226 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 281
++G+G T P V + + GG+ VD RT + G++AIG+V+ L +R A
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMA 388
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 79/208 (37%), Gaps = 32/208 (15%)
Query: 81 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKXXX 138
T SG +LK S+IVATG +PG R V L K K+
Sbjct: 96 TASGAVLKARSIIVATGAKWRNMN------VPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 149
Query: 139 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
G+E A +D I LL+ F P + + +Q+ Q ++ +K I
Sbjct: 150 IGGGNSGVEAA-------IDLAGIVEHVTLLE--FAPEM--KADQVLQDK-LRSLKNVDI 197
Query: 199 ----KNLEAGSDGRVAAVKLE-------DGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 247
+ E DG V LE D I+ I + IG P + E + +
Sbjct: 198 ILNAQTTEVKGDGS-KVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRM 256
Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFPLK 275
G I +D + T + G+FA GD P K
Sbjct: 257 GEIIIDAKCETNVKGVFAAGDCTTVPYK 284
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 80/207 (38%), Gaps = 30/207 (14%)
Query: 81 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKXXX 138
T SG +LK S+I+ATG +PG R V L K K+
Sbjct: 307 TASGAVLKARSIIIATGAKWRNM------NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAV 360
Query: 139 XXXXYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198
G+E A +D I LL+ F P + + +Q+ Q V+ +K I
Sbjct: 361 IGGGNSGVEAA-------IDLAGIVEHVTLLE--FAPEM--KADQVLQDK-VRSLKNVDI 408
Query: 199 ----KNLEAGSDG-RVAAVKLEDGSTIDADTIVIG-----IGAKPTVSPFERVGLNSSVG 248
+ E DG +V ++ D + D ++ + IG P E + +G
Sbjct: 409 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMG 468
Query: 249 GIQVDGQFRTRMPGIFAIGDVAAFPLK 275
I +D + T + G+FA GD P K
Sbjct: 469 EIIIDAKCETSVKGVFAAGDCTTVPYK 495
>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form I)
pdb|3LZX|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
pdb|3LZX|B Chain B, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From
Bacillus Subtilis (Form Ii)
Length = 332
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 212 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271
VK + ++ D +++ G ++ P + GL+ I V T + G FA GD+
Sbjct: 229 VKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICT 288
Query: 272 FPLKM 276
+ K+
Sbjct: 289 YEGKV 293
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex With
Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 226 VIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFRTRMPGIFAIGDVA 270
++G+G T P V + + GG+ VD RT + G++AIG+V+
Sbjct: 332 LLGLGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVS 377
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKI 107
WY E Y+ + ++I Q L + K Y IV +GCT R P+K+
Sbjct: 209 WYTPIRREWYYEVIIVRVEINGQDLKMDC-KEYNYDKSIVDSGCTNLRLPKKV 260
>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ6|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2EQ8|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ9|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|D Chain D, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|E Chain E, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|G Chain G, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|H Chain H, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|J Chain J, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|K Chain K, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 464
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 248 GGIQVDGQFRTRMPGIFAIGDVAAFPL 274
G I+V+ + T +PG++AIGD A PL
Sbjct: 289 GFIRVNARMETSVPGVYAIGDAARPPL 315
>pdb|3HYV|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYV|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From The Hyperthermophilic Bacterium Aquifex Aeolicus
pdb|3HYX|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
pdb|3HYX|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
From Aquifex Aeolicus In Complex With Aurachin C
Length = 430
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 60 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 97
IE I + SID + T+ T SGK ++Y L++ATG
Sbjct: 70 NIEFI-NEKAESIDPDANTVTTQSGKKIEYDYLVIATG 106
>pdb|3HYW|A Chain A, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|B Chain B, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|C Chain C, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|D Chain D, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|E Chain E, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
pdb|3HYW|F Chain F, 3-D X-Ray Structure Of The Sulfide:quinone Oxidoreductase
Of The Hyperthermophilic Bacterium Aquifex Aeolicus In
Complex With Decylubiquinone
Length = 430
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 60 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 97
IE I + SID + T+ T SGK ++Y L++ATG
Sbjct: 70 NIEFI-NEKAESIDPDANTVTTQSGKKIEYDYLVIATG 106
>pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2A8X|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From
Mycobacterium Tuberculosis
Length = 464
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 87 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGM 146
+ + + I+ATG +++R +PG +V + I S E K IG
Sbjct: 133 VTFDNAIIATG-SSTRL-------VPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGX 184
Query: 147 EVAAAAVGWKLDTTIIFPENHLLQRLF---TPSLAQRYEQLYQQNGVKFVKGASIKNL-E 202
E + +D TI+ L R +++ E+ +++ GV + ++++ +
Sbjct: 185 EFGYVLKNYGVDVTIV----EFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIAD 240
Query: 203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTR 259
GS V K + A+ ++ IG P V + ++ G+ + I VD RT
Sbjct: 241 GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYXRTN 300
Query: 260 MPGIFAIGDV 269
+ I+AIGDV
Sbjct: 301 VGHIYAIGDV 310
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 298
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 299 ALLSAQTHTYD 309
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 298
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 299 ALLSAQTHTYD 309
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-------TARVEHVDHARQSAQHCIK 298
S+GGI+ D + ++ G+F+ G+ A + + ++R A V + A+HC
Sbjct: 371 SMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCAN 430
Query: 299 ALLSAQTHTYD 309
+ +T T +
Sbjct: 431 TQVDLETKTLE 441
>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
pdb|2QAE|B Chain B, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide
Dehydrogenase
Length = 468
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 219 TIDADTIVIGIGAKPTVSPFERVGLN---SSVGGIQVDGQFRTRMPGIFAIGDV 269
T+ + +++ +G +P +N + G +++ F T +P ++AIGDV
Sbjct: 262 TVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,181,221
Number of Sequences: 62578
Number of extensions: 514953
Number of successful extensions: 1407
Number of sequences better than 100.0: 139
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 74
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 146
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)