Query 014997
Match_columns 414
No_of_seqs 414 out of 3551
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 02:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09754 phenylpropionate diox 100.0 2.5E-56 5.3E-61 440.9 46.1 366 2-395 27-394 (396)
2 KOG1336 Monodehydroascorbate/f 100.0 4.8E-55 1E-59 415.1 34.5 377 2-403 98-476 (478)
3 TIGR02374 nitri_red_nirB nitri 100.0 6.6E-47 1.4E-51 400.3 44.2 356 2-388 23-384 (785)
4 COG1251 NirB NAD(P)H-nitrite r 100.0 1.6E-48 3.5E-53 386.1 29.1 355 3-388 29-389 (793)
5 PRK14989 nitrite reductase sub 100.0 4.4E-46 9.5E-51 393.7 44.3 356 3-388 30-395 (847)
6 PRK04965 NADH:flavorubredoxin 100.0 3.5E-45 7.5E-50 359.4 40.4 336 2-371 26-366 (377)
7 PRK13512 coenzyme A disulfide 100.0 1.8E-41 3.8E-46 338.8 38.8 368 2-398 25-424 (438)
8 PRK09564 coenzyme A disulfide 100.0 4.1E-41 8.9E-46 337.8 37.4 375 2-400 24-432 (444)
9 TIGR03385 CoA_CoA_reduc CoA-di 100.0 5.5E-40 1.2E-44 327.8 40.2 362 2-388 11-404 (427)
10 KOG1346 Programmed cell death 100.0 4E-42 8.7E-47 318.6 21.7 378 2-388 202-647 (659)
11 COG1249 Lpd Pyruvate/2-oxoglut 100.0 2.4E-37 5.1E-42 304.4 35.4 320 54-405 102-454 (454)
12 COG1252 Ndh NADH dehydrogenase 100.0 6E-38 1.3E-42 301.2 24.8 283 3-315 28-341 (405)
13 PLN02507 glutathione reductase 100.0 2E-36 4.3E-41 306.1 35.5 320 56-407 134-485 (499)
14 PTZ00318 NADH dehydrogenase-li 100.0 4.8E-37 1E-41 305.7 26.7 283 3-315 33-358 (424)
15 PRK05249 soluble pyridine nucl 100.0 2.8E-35 6.2E-40 296.7 38.5 326 54-410 102-458 (461)
16 PRK06370 mercuric reductase; V 100.0 1.9E-35 4.1E-40 297.9 35.3 325 54-409 102-457 (463)
17 PRK07846 mycothione reductase; 100.0 3.7E-35 8E-40 293.9 35.3 319 56-408 99-449 (451)
18 PRK07845 flavoprotein disulfid 100.0 4.1E-35 8.9E-40 295.1 34.6 325 54-409 100-460 (466)
19 TIGR01424 gluta_reduc_2 glutat 100.0 3.1E-35 6.6E-40 294.7 33.4 318 54-404 98-445 (446)
20 PRK06416 dihydrolipoamide dehy 100.0 3.9E-35 8.5E-40 295.7 34.3 325 55-410 101-457 (462)
21 PRK06116 glutathione reductase 100.0 5E-35 1.1E-39 293.9 34.3 317 55-405 102-450 (450)
22 PRK06467 dihydrolipoamide dehy 100.0 8.4E-35 1.8E-39 293.0 35.4 326 55-411 102-461 (471)
23 TIGR01421 gluta_reduc_1 glutat 100.0 7.6E-35 1.7E-39 291.7 34.1 317 55-404 100-449 (450)
24 PLN02546 glutathione reductase 100.0 6.3E-35 1.4E-39 296.7 33.8 318 54-405 186-532 (558)
25 PRK06115 dihydrolipoamide dehy 100.0 1.5E-34 3.2E-39 291.1 35.2 327 56-412 103-463 (466)
26 TIGR03452 mycothione_red mycot 100.0 1.7E-34 3.6E-39 289.4 35.1 316 59-408 105-452 (452)
27 PRK14694 putative mercuric red 100.0 1.7E-34 3.8E-39 291.0 35.2 318 60-409 111-457 (468)
28 PRK05976 dihydrolipoamide dehy 100.0 2.8E-34 6E-39 290.0 36.1 327 54-409 100-466 (472)
29 TIGR02053 MerA mercuric reduct 100.0 2.5E-34 5.3E-39 289.9 35.5 323 54-409 96-452 (463)
30 PTZ00058 glutathione reductase 100.0 1.9E-34 4.2E-39 293.0 34.6 306 82-408 196-560 (561)
31 TIGR03169 Nterm_to_SelD pyridi 100.0 3.9E-35 8.3E-40 287.1 28.5 270 2-302 24-308 (364)
32 TIGR01423 trypano_reduc trypan 100.0 2.7E-34 5.9E-39 288.9 34.3 317 56-405 113-471 (486)
33 PRK13748 putative mercuric red 100.0 4.6E-34 9.9E-39 294.7 34.6 322 57-410 199-551 (561)
34 PRK08010 pyridine nucleotide-d 100.0 6.4E-34 1.4E-38 285.1 32.9 316 59-406 90-438 (441)
35 PRK07818 dihydrolipoamide dehy 100.0 1.9E-33 4.1E-38 283.4 35.9 320 59-411 105-462 (466)
36 PRK14727 putative mercuric red 100.0 1.4E-33 3.1E-38 284.8 33.6 318 60-409 121-468 (479)
37 TIGR01438 TGR thioredoxin and 100.0 1.8E-33 3.8E-38 283.6 33.2 322 55-407 109-470 (484)
38 PTZ00153 lipoamide dehydrogena 100.0 3.9E-33 8.4E-38 287.0 35.6 319 61-409 249-654 (659)
39 PRK06912 acoL dihydrolipoamide 100.0 7.2E-33 1.6E-37 278.5 36.4 323 56-410 100-453 (458)
40 TIGR01350 lipoamide_DH dihydro 100.0 1.1E-32 2.4E-37 277.9 35.2 327 55-410 98-456 (461)
41 PRK06327 dihydrolipoamide dehy 100.0 3.2E-32 6.9E-37 274.9 35.1 324 56-410 110-470 (475)
42 PRK06292 dihydrolipoamide dehy 100.0 4.5E-32 9.7E-37 273.4 33.1 319 56-410 102-455 (460)
43 PRK07251 pyridine nucleotide-d 100.0 6.1E-32 1.3E-36 270.6 32.9 319 54-406 84-437 (438)
44 PTZ00052 thioredoxin reductase 100.0 1.3E-31 2.9E-36 271.2 31.9 315 59-406 115-479 (499)
45 COG0446 HcaD Uncharacterized N 100.0 2.1E-31 4.6E-36 264.6 32.2 302 2-321 22-327 (415)
46 KOG1335 Dihydrolipoamide dehyd 100.0 1.9E-30 4.1E-35 239.3 24.0 328 54-410 138-500 (506)
47 TIGR01316 gltA glutamate synth 100.0 7.8E-29 1.7E-33 248.1 21.8 228 52-302 189-447 (449)
48 TIGR01292 TRX_reduct thioredox 100.0 6.9E-28 1.5E-32 229.2 23.4 227 49-302 60-298 (300)
49 KOG0405 Pyridine nucleotide-di 100.0 7.4E-28 1.6E-32 219.5 19.6 287 57-374 121-438 (478)
50 TIGR03140 AhpF alkyl hydropero 100.0 3.7E-28 7.9E-33 247.3 19.1 234 44-302 265-510 (515)
51 PRK10262 thioredoxin reductase 100.0 2E-27 4.3E-32 228.6 21.2 230 50-301 67-311 (321)
52 PRK09853 putative selenate red 100.0 1.2E-26 2.6E-31 244.8 25.0 242 51-319 594-856 (1019)
53 KOG2495 NADH-dehydrogenase (ub 100.0 3.6E-27 7.7E-32 221.1 17.7 267 4-301 79-393 (491)
54 PRK15317 alkyl hydroperoxide r 100.0 6.4E-27 1.4E-31 238.5 21.1 241 36-301 256-508 (517)
55 PRK12831 putative oxidoreducta 99.9 2.2E-26 4.7E-31 231.0 22.5 230 51-302 196-458 (464)
56 COG0492 TrxB Thioredoxin reduc 99.9 1.5E-26 3.3E-31 217.5 18.5 240 33-301 47-297 (305)
57 TIGR03143 AhpF_homolog putativ 99.9 5.6E-25 1.2E-29 225.7 25.1 237 38-301 52-305 (555)
58 PRK12770 putative glutamate sy 99.9 8.9E-25 1.9E-29 212.6 22.4 230 52-302 74-347 (352)
59 PRK11749 dihydropyrimidine deh 99.9 7E-25 1.5E-29 220.6 21.4 228 51-302 195-449 (457)
60 PRK12778 putative bifunctional 99.9 9.3E-25 2E-29 231.8 22.2 230 51-302 486-747 (752)
61 PRK12814 putative NADPH-depend 99.9 5.1E-24 1.1E-28 222.1 21.2 228 52-302 249-498 (652)
62 PRK12779 putative bifunctional 99.9 2.8E-23 6.1E-28 222.4 26.0 230 51-302 361-624 (944)
63 TIGR01317 GOGAT_sm_gam glutama 99.9 2.6E-23 5.7E-28 209.8 21.7 234 51-302 198-476 (485)
64 TIGR01318 gltD_gamma_fam gluta 99.9 4.3E-23 9.2E-28 207.5 22.7 229 51-302 196-463 (467)
65 PRK12810 gltD glutamate syntha 99.9 3.1E-23 6.8E-28 209.1 20.2 233 52-302 199-462 (471)
66 PRK12775 putative trifunctiona 99.9 4.9E-23 1.1E-27 222.4 23.0 231 50-302 484-752 (1006)
67 PRK12769 putative oxidoreducta 99.9 2E-22 4.4E-27 210.8 24.2 229 51-302 382-649 (654)
68 TIGR03315 Se_ygfK putative sel 99.9 2.2E-22 4.7E-27 213.8 22.1 223 51-303 592-838 (1012)
69 PRK13984 putative oxidoreducta 99.9 4.1E-22 9E-27 207.1 22.5 227 51-302 338-599 (604)
70 PRK12809 putative oxidoreducta 99.9 7.6E-22 1.6E-26 205.7 22.7 228 52-302 366-632 (639)
71 KOG4716 Thioredoxin reductase 99.9 9.5E-22 2.1E-26 179.1 18.4 208 86-313 159-377 (503)
72 KOG0404 Thioredoxin reductase 99.9 1.5E-22 3.3E-27 174.4 10.7 228 32-272 55-295 (322)
73 COG3634 AhpF Alkyl hydroperoxi 99.9 3.6E-22 7.7E-27 182.5 12.4 227 33-275 253-494 (520)
74 PLN02852 ferredoxin-NADP+ redu 99.9 1.4E-20 3E-25 187.8 20.7 233 54-302 87-419 (491)
75 TIGR01372 soxA sarcosine oxida 99.8 7.9E-20 1.7E-24 198.6 23.3 222 52-301 221-468 (985)
76 PRK12771 putative glutamate sy 99.8 1.4E-19 3.1E-24 186.5 20.8 226 52-301 193-440 (564)
77 KOG3851 Sulfide:quinone oxidor 99.8 4.4E-20 9.6E-25 167.2 11.5 272 2-302 63-358 (446)
78 KOG2755 Oxidoreductase [Genera 99.7 3.3E-17 7.2E-22 144.8 12.5 200 68-272 72-322 (334)
79 PLN02172 flavin-containing mon 99.7 3.2E-16 7E-21 156.8 15.5 224 48-304 113-352 (461)
80 COG0493 GltD NADPH-dependent g 99.6 5.3E-15 1.2E-19 146.4 10.7 236 49-301 176-447 (457)
81 PF00070 Pyr_redox: Pyridine n 99.5 6.6E-14 1.4E-18 105.8 11.1 80 135-217 1-80 (80)
82 PF07992 Pyr_redox_2: Pyridine 99.5 4.6E-14 9.9E-19 126.1 9.8 139 135-273 1-200 (201)
83 PF00743 FMO-like: Flavin-bind 99.5 1.5E-13 3.3E-18 139.5 12.8 246 34-304 74-396 (531)
84 PRK06567 putative bifunctional 99.4 6.9E-12 1.5E-16 132.1 19.5 182 86-301 495-766 (1028)
85 KOG0399 Glutamate synthase [Am 99.4 1.7E-12 3.6E-17 134.0 10.4 233 50-298 1839-2117(2142)
86 COG3486 IucD Lysine/ornithine 99.4 8.8E-11 1.9E-15 111.2 20.6 215 54-272 105-388 (436)
87 PF13434 K_oxygenase: L-lysine 99.3 9.1E-12 2E-16 120.0 11.3 169 59-232 108-340 (341)
88 PF13738 Pyr_redox_3: Pyridine 99.2 5E-11 1.1E-15 106.7 8.1 111 50-167 86-201 (203)
89 PRK05329 anaerobic glycerol-3- 99.2 7.1E-10 1.5E-14 109.5 15.8 158 137-302 219-418 (422)
90 PF14759 Reductase_C: Reductas 99.1 8.8E-10 1.9E-14 83.9 9.6 81 313-401 1-84 (85)
91 TIGR01292 TRX_reduct thioredox 98.9 2.2E-08 4.8E-13 95.0 13.2 99 135-236 2-115 (300)
92 COG2081 Predicted flavoprotein 98.9 4.4E-08 9.4E-13 93.3 13.5 110 134-245 4-188 (408)
93 PTZ00188 adrenodoxin reductase 98.8 2E-07 4.3E-12 92.6 16.0 101 188-300 324-439 (506)
94 COG2072 TrkA Predicted flavopr 98.7 9E-08 1.9E-12 95.8 11.6 111 52-167 88-209 (443)
95 KOG1800 Ferredoxin/adrenodoxin 98.7 2.6E-07 5.6E-12 86.9 12.1 66 87-153 107-179 (468)
96 PRK09754 phenylpropionate diox 98.6 3.1E-07 6.7E-12 91.0 12.1 98 133-234 3-113 (396)
97 PF03486 HI0933_like: HI0933-l 98.6 3.1E-07 6.6E-12 90.6 11.5 109 135-244 2-186 (409)
98 TIGR00292 thiazole biosynthesi 98.6 4.3E-06 9.2E-11 77.4 17.5 166 133-302 21-251 (254)
99 TIGR03140 AhpF alkyl hydropero 98.6 8.1E-07 1.8E-11 91.0 13.8 101 132-234 211-324 (515)
100 PF13738 Pyr_redox_3: Pyridine 98.6 6E-07 1.3E-11 80.1 11.1 97 137-235 1-142 (203)
101 PRK04176 ribulose-1,5-biphosph 98.6 2.9E-06 6.4E-11 78.7 15.8 166 133-302 25-252 (257)
102 PRK15317 alkyl hydroperoxide r 98.5 1.2E-06 2.6E-11 89.8 14.0 100 133-234 211-323 (517)
103 KOG1399 Flavin-containing mono 98.5 3.1E-07 6.8E-12 91.0 9.3 169 52-242 96-278 (448)
104 PRK06847 hypothetical protein; 98.5 1.7E-06 3.6E-11 85.0 13.4 102 132-235 3-165 (375)
105 PRK09564 coenzyme A disulfide 98.5 7.7E-07 1.7E-11 89.6 11.1 101 134-236 1-118 (444)
106 PLN02172 flavin-containing mon 98.5 8.9E-06 1.9E-10 81.9 18.0 103 132-236 9-178 (461)
107 TIGR03169 Nterm_to_SelD pyridi 98.4 1.2E-06 2.7E-11 85.7 10.2 97 135-236 1-110 (364)
108 PTZ00318 NADH dehydrogenase-li 98.4 1.9E-06 4.1E-11 86.1 11.4 99 132-235 9-127 (424)
109 TIGR02374 nitri_red_nirB nitri 98.4 1.4E-06 3E-11 93.5 10.7 97 136-236 1-111 (785)
110 COG4529 Uncharacterized protei 98.4 2.1E-05 4.6E-10 77.1 17.6 230 61-301 122-459 (474)
111 PRK07236 hypothetical protein; 98.4 2.9E-06 6.2E-11 83.8 11.6 101 132-234 5-155 (386)
112 PRK14989 nitrite reductase sub 98.4 2.6E-06 5.6E-11 91.6 11.5 100 133-236 3-116 (847)
113 PF01134 GIDA: Glucose inhibit 98.3 4.7E-06 1E-10 80.9 11.9 95 135-231 1-150 (392)
114 PRK09853 putative selenate red 98.3 3E-06 6.6E-11 91.2 11.3 91 132-234 538-636 (1019)
115 PRK12770 putative glutamate sy 98.3 1.8E-06 3.9E-11 84.2 9.0 101 131-232 16-129 (352)
116 COG1148 HdrA Heterodisulfide r 98.3 2.3E-05 5.1E-10 76.2 16.0 178 86-272 298-523 (622)
117 PF01266 DAO: FAD dependent ox 98.3 3.7E-06 7.9E-11 81.5 11.0 64 177-243 149-212 (358)
118 PRK12779 putative bifunctional 98.3 2.1E-06 4.5E-11 93.3 10.0 93 132-234 305-406 (944)
119 COG0492 TrxB Thioredoxin reduc 98.3 3.1E-05 6.7E-10 73.4 16.6 98 134-235 4-117 (305)
120 COG1252 Ndh NADH dehydrogenase 98.3 3.4E-06 7.4E-11 82.2 9.9 99 133-236 3-114 (405)
121 TIGR02032 GG-red-SF geranylger 98.3 9.7E-06 2.1E-10 76.5 12.9 97 135-233 2-148 (295)
122 PRK11749 dihydropyrimidine deh 98.3 2.5E-06 5.5E-11 86.1 9.0 90 132-232 139-236 (457)
123 PRK13512 coenzyme A disulfide 98.3 6.3E-06 1.4E-10 82.8 11.6 100 134-235 2-119 (438)
124 PRK06834 hypothetical protein; 98.3 1.3E-05 2.7E-10 81.6 13.5 107 134-244 4-165 (488)
125 PRK07045 putative monooxygenas 98.3 1.6E-05 3.5E-10 78.5 13.8 101 134-234 6-166 (388)
126 PRK08773 2-octaprenyl-3-methyl 98.3 1.2E-05 2.7E-10 79.5 12.9 108 133-244 6-178 (392)
127 PLN02463 lycopene beta cyclase 98.2 1.2E-05 2.6E-10 80.6 12.6 98 134-234 29-170 (447)
128 PRK04965 NADH:flavorubredoxin 98.2 1.2E-05 2.6E-10 79.1 12.2 98 134-236 3-114 (377)
129 PRK10262 thioredoxin reductase 98.2 2.1E-05 4.6E-10 75.6 13.4 100 132-235 5-119 (321)
130 TIGR01424 gluta_reduc_2 glutat 98.2 1.2E-05 2.5E-10 81.1 11.8 95 135-236 4-145 (446)
131 TIGR01316 gltA glutamate synth 98.2 4.3E-06 9.4E-11 84.2 8.5 92 132-234 132-232 (449)
132 PRK08163 salicylate hydroxylas 98.2 2.2E-05 4.8E-10 77.7 13.3 100 133-234 4-167 (396)
133 PRK12831 putative oxidoreducta 98.2 5.4E-06 1.2E-10 83.7 8.8 93 132-234 139-242 (464)
134 PRK08244 hypothetical protein; 98.2 2.3E-05 5E-10 80.0 13.3 101 134-234 3-160 (493)
135 PRK07333 2-octaprenyl-6-methox 98.1 2.5E-05 5.5E-10 77.4 12.7 106 135-244 3-176 (403)
136 PRK07588 hypothetical protein; 98.1 2.5E-05 5.5E-10 77.2 12.6 98 135-235 2-160 (391)
137 PLN02852 ferredoxin-NADP+ redu 98.1 7.6E-06 1.7E-10 82.5 8.7 92 132-234 25-127 (491)
138 PRK10157 putative oxidoreducta 98.1 4E-05 8.6E-10 76.8 13.8 107 134-244 6-173 (428)
139 COG0579 Predicted dehydrogenas 98.1 3.3E-05 7.2E-10 75.9 12.8 67 177-245 155-222 (429)
140 TIGR03143 AhpF_homolog putativ 98.1 3E-05 6.6E-10 80.2 13.3 97 134-235 5-116 (555)
141 PRK01438 murD UDP-N-acetylmura 98.1 1.4E-05 3E-10 81.3 10.5 88 132-245 15-105 (480)
142 PRK07190 hypothetical protein; 98.1 6.9E-05 1.5E-09 76.2 15.1 98 134-233 6-165 (487)
143 TIGR01318 gltD_gamma_fam gluta 98.1 9.4E-06 2E-10 82.1 8.8 92 132-234 140-239 (467)
144 PRK06116 glutathione reductase 98.1 1.9E-05 4.2E-10 79.6 11.0 94 134-236 5-146 (450)
145 PRK05868 hypothetical protein; 98.1 3.7E-05 8E-10 75.5 12.5 100 134-235 2-162 (372)
146 PRK05714 2-octaprenyl-3-methyl 98.1 3.8E-05 8.2E-10 76.4 12.7 99 134-234 3-169 (405)
147 PTZ00188 adrenodoxin reductase 98.1 1.9E-05 4.1E-10 78.7 10.2 92 132-234 38-139 (506)
148 PF04820 Trp_halogenase: Trypt 98.1 3.9E-05 8.6E-10 77.2 12.7 57 177-234 156-212 (454)
149 TIGR01984 UbiH 2-polyprenyl-6- 98.1 4.3E-05 9.4E-10 75.2 12.9 97 135-233 1-162 (382)
150 COG1635 THI4 Ribulose 1,5-bisp 98.1 9.4E-05 2E-09 65.1 13.1 138 133-271 30-229 (262)
151 PRK12778 putative bifunctional 98.1 1.1E-05 2.4E-10 86.4 9.2 93 132-234 430-531 (752)
152 TIGR01317 GOGAT_sm_gam glutama 98.1 1.1E-05 2.5E-10 81.9 8.7 90 132-232 142-239 (485)
153 PRK06184 hypothetical protein; 98.1 5.1E-05 1.1E-09 77.6 13.4 98 134-233 4-168 (502)
154 TIGR03315 Se_ygfK putative sel 98.1 1.5E-05 3.3E-10 86.2 9.8 90 133-234 537-634 (1012)
155 PRK07845 flavoprotein disulfid 98.1 5.6E-05 1.2E-09 76.6 13.4 99 134-234 2-152 (466)
156 PRK09126 hypothetical protein; 98.1 4.8E-05 1E-09 75.2 12.7 100 134-235 4-169 (392)
157 COG0654 UbiH 2-polyprenyl-6-me 98.1 5.9E-05 1.3E-09 74.5 13.1 99 133-233 2-162 (387)
158 PF01494 FAD_binding_3: FAD bi 98.0 3.6E-05 7.9E-10 74.4 11.3 100 135-234 3-173 (356)
159 TIGR01988 Ubi-OHases Ubiquinon 98.0 6.2E-05 1.3E-09 74.1 13.0 98 135-234 1-164 (385)
160 PRK09897 hypothetical protein; 98.0 0.00067 1.4E-08 69.4 20.6 87 61-155 124-213 (534)
161 PRK07608 ubiquinone biosynthes 98.0 6.7E-05 1.5E-09 74.0 12.8 98 134-234 6-168 (388)
162 PRK07364 2-octaprenyl-6-methox 98.0 6.4E-05 1.4E-09 74.9 12.7 100 133-234 18-182 (415)
163 PRK08132 FAD-dependent oxidore 98.0 8.9E-05 1.9E-09 76.7 13.9 102 133-234 23-186 (547)
164 COG0644 FixC Dehydrogenases (f 98.0 8.1E-05 1.8E-09 73.8 13.0 108 134-244 4-161 (396)
165 PRK08013 oxidoreductase; Provi 98.0 7.1E-05 1.5E-09 74.3 12.6 99 134-234 4-169 (400)
166 PRK06753 hypothetical protein; 98.0 5.2E-05 1.1E-09 74.4 11.5 98 135-234 2-153 (373)
167 PRK08010 pyridine nucleotide-d 98.0 6.5E-05 1.4E-09 75.6 12.3 98 134-236 4-134 (441)
168 PRK12775 putative trifunctiona 98.0 1.9E-05 4.2E-10 86.6 9.0 93 132-234 429-531 (1006)
169 PF00743 FMO-like: Flavin-bind 98.0 0.00011 2.4E-09 75.2 13.9 138 133-270 1-193 (531)
170 PRK05249 soluble pyridine nucl 98.0 7.1E-05 1.5E-09 75.7 12.5 97 134-235 6-151 (461)
171 PRK07251 pyridine nucleotide-d 98.0 4.9E-05 1.1E-09 76.4 11.2 98 134-236 4-133 (438)
172 PRK08020 ubiF 2-octaprenyl-3-m 98.0 9E-05 2E-09 73.2 12.8 100 133-234 5-170 (391)
173 PF07992 Pyr_redox_2: Pyridine 98.0 4.3E-06 9.4E-11 74.3 3.1 129 2-140 21-159 (201)
174 PRK05976 dihydrolipoamide dehy 98.0 7E-05 1.5E-09 76.0 12.2 100 133-234 4-155 (472)
175 PRK08849 2-octaprenyl-3-methyl 98.0 9.4E-05 2E-09 73.0 12.6 100 134-235 4-169 (384)
176 PLN02697 lycopene epsilon cycl 98.0 9.8E-05 2.1E-09 75.3 12.8 98 134-233 109-248 (529)
177 PRK08850 2-octaprenyl-6-methox 97.9 0.0001 2.2E-09 73.2 12.5 100 133-234 4-169 (405)
178 PRK12810 gltD glutamate syntha 97.9 2.9E-05 6.3E-10 78.7 8.6 91 132-233 142-240 (471)
179 PRK06467 dihydrolipoamide dehy 97.9 9.4E-05 2E-09 75.0 12.2 96 134-234 5-149 (471)
180 PRK12809 putative oxidoreducta 97.9 2.5E-05 5.3E-10 82.2 8.2 92 132-234 309-408 (639)
181 TIGR03378 glycerol3P_GlpB glyc 97.9 0.00039 8.5E-09 68.4 15.7 140 154-301 245-419 (419)
182 TIGR01790 carotene-cycl lycope 97.9 0.00014 3E-09 71.8 12.8 97 135-233 1-141 (388)
183 PRK05192 tRNA uridine 5-carbox 97.9 0.0001 2.2E-09 75.6 12.0 96 134-231 5-155 (618)
184 PRK11728 hydroxyglutarate oxid 97.9 0.00014 3.1E-09 71.9 12.9 58 182-243 156-213 (393)
185 PRK06475 salicylate hydroxylas 97.9 0.00015 3.4E-09 71.9 13.0 99 134-234 3-168 (400)
186 PRK06183 mhpA 3-(3-hydroxyphen 97.9 0.00013 2.9E-09 75.2 12.9 100 133-234 10-175 (538)
187 PRK06617 2-octaprenyl-6-methox 97.9 0.00014 3.1E-09 71.4 12.4 98 135-235 3-162 (374)
188 TIGR01421 gluta_reduc_1 glutat 97.9 0.00012 2.6E-09 73.9 11.3 94 134-236 3-144 (450)
189 PRK05732 2-octaprenyl-6-methox 97.9 0.0002 4.4E-09 70.8 12.8 106 134-243 4-177 (395)
190 PRK07494 2-octaprenyl-6-methox 97.8 0.00018 3.9E-09 71.0 12.3 99 133-234 7-168 (388)
191 PRK06185 hypothetical protein; 97.8 0.00024 5.1E-09 70.7 13.3 109 133-244 6-178 (407)
192 PRK12814 putative NADPH-depend 97.8 4.7E-05 1E-09 80.2 8.5 92 132-234 192-291 (652)
193 PRK10015 oxidoreductase; Provi 97.8 0.00023 4.9E-09 71.3 13.0 98 134-233 6-164 (429)
194 KOG1399 Flavin-containing mono 97.8 0.00043 9.3E-09 68.9 14.7 136 132-268 5-194 (448)
195 TIGR00136 gidA glucose-inhibit 97.8 0.00022 4.9E-09 73.1 12.7 98 135-233 2-154 (617)
196 PRK06370 mercuric reductase; V 97.8 0.00011 2.3E-09 74.5 10.5 95 133-236 5-148 (463)
197 TIGR01789 lycopene_cycl lycope 97.8 0.00011 2.4E-09 72.0 10.3 94 135-234 1-139 (370)
198 PF12831 FAD_oxidored: FAD dep 97.8 1.5E-05 3.1E-10 79.9 4.1 107 135-245 1-159 (428)
199 PRK12769 putative oxidoreducta 97.8 5.1E-05 1.1E-09 80.1 8.4 91 132-233 326-424 (654)
200 TIGR03219 salicylate_mono sali 97.8 0.00013 2.7E-09 72.8 10.8 98 135-234 2-160 (414)
201 PRK06416 dihydrolipoamide dehy 97.8 0.00015 3.2E-09 73.4 11.3 95 134-234 5-147 (462)
202 COG2072 TrkA Predicted flavopr 97.8 0.0011 2.3E-08 66.6 17.2 138 132-271 7-186 (443)
203 PRK09897 hypothetical protein; 97.8 0.00036 7.8E-09 71.3 13.5 99 134-234 2-167 (534)
204 PRK06115 dihydrolipoamide dehy 97.8 0.00021 4.6E-09 72.3 11.8 96 134-234 4-149 (466)
205 TIGR01377 soxA_mon sarcosine o 97.8 0.00034 7.3E-09 68.8 12.8 58 181-242 151-208 (380)
206 PLN02661 Putative thiazole syn 97.8 0.00067 1.5E-08 65.1 14.2 101 133-234 92-245 (357)
207 COG3075 GlpB Anaerobic glycero 97.8 0.00022 4.8E-09 66.4 10.3 103 173-276 256-393 (421)
208 TIGR01372 soxA sarcosine oxida 97.8 0.00034 7.4E-09 77.2 13.7 101 133-235 163-288 (985)
209 KOG1336 Monodehydroascorbate/f 97.7 0.00013 2.9E-09 71.2 9.1 98 133-234 74-182 (478)
210 TIGR00275 flavoprotein, HI0933 97.7 0.00022 4.8E-09 70.7 11.0 94 137-233 1-160 (400)
211 PRK06126 hypothetical protein; 97.7 0.00042 9.2E-09 71.7 13.2 102 133-234 7-189 (545)
212 PRK06996 hypothetical protein; 97.7 0.00037 8.1E-09 69.1 12.0 99 132-232 10-173 (398)
213 TIGR01989 COQ6 Ubiquinone bios 97.7 0.00051 1.1E-08 69.0 13.0 100 135-234 2-184 (437)
214 TIGR02053 MerA mercuric reduct 97.7 0.00033 7.3E-09 70.9 11.6 94 135-236 2-143 (463)
215 PRK11259 solA N-methyltryptoph 97.7 0.00055 1.2E-08 67.2 12.8 47 185-234 159-205 (376)
216 PRK08243 4-hydroxybenzoate 3-m 97.7 0.00066 1.4E-08 67.2 13.3 100 134-235 3-165 (392)
217 COG0029 NadB Aspartate oxidase 97.7 0.0018 3.9E-08 63.9 15.7 55 248-303 342-396 (518)
218 TIGR00137 gid_trmFO tRNA:m(5)U 97.7 7.2E-05 1.6E-09 73.9 5.9 34 135-168 2-35 (433)
219 TIGR01813 flavo_cyto_c flavocy 97.7 0.00082 1.8E-08 67.6 13.7 61 179-239 134-199 (439)
220 PF05834 Lycopene_cycl: Lycope 97.6 0.00046 1E-08 67.8 11.5 97 135-234 1-143 (374)
221 PLN02546 glutathione reductase 97.6 0.00037 8.1E-09 71.8 10.9 94 135-236 81-231 (558)
222 PRK07538 hypothetical protein; 97.6 0.00065 1.4E-08 67.7 12.4 98 135-234 2-166 (413)
223 PRK06481 fumarate reductase fl 97.6 0.00082 1.8E-08 68.8 13.4 107 133-240 61-259 (506)
224 TIGR01373 soxB sarcosine oxida 97.6 0.001 2.2E-08 66.1 13.6 52 181-233 189-240 (407)
225 PRK13984 putative oxidoreducta 97.6 0.00018 3.8E-09 75.4 8.4 91 132-233 282-380 (604)
226 PRK12771 putative glutamate sy 97.6 0.00018 3.8E-09 74.7 8.4 92 131-234 135-235 (564)
227 TIGR01350 lipoamide_DH dihydro 97.6 0.0006 1.3E-08 69.0 11.5 30 135-164 3-32 (461)
228 PRK12409 D-amino acid dehydrog 97.6 0.0013 2.8E-08 65.5 13.7 33 134-166 2-34 (410)
229 PRK13748 putative mercuric red 97.5 0.0012 2.6E-08 68.6 13.5 97 134-236 99-247 (561)
230 TIGR02028 ChlP geranylgeranyl 97.5 0.0014 3E-08 65.1 13.3 99 135-234 2-161 (398)
231 PRK06567 putative bifunctional 97.5 0.00019 4.1E-09 76.9 7.4 34 132-165 382-415 (1028)
232 TIGR02023 BchP-ChlP geranylger 97.5 0.0012 2.7E-08 65.2 12.7 96 135-233 2-155 (388)
233 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 0.0012 2.7E-08 65.2 12.5 100 134-234 3-164 (390)
234 PRK01747 mnmC bifunctional tRN 97.5 0.0011 2.4E-08 70.3 12.9 32 134-165 261-292 (662)
235 PF01946 Thi4: Thi4 family; PD 97.5 0.0014 3E-08 58.1 11.2 103 133-235 17-167 (230)
236 PRK06327 dihydrolipoamide dehy 97.5 0.0012 2.7E-08 67.0 12.7 31 134-164 5-35 (475)
237 PRK14694 putative mercuric red 97.5 0.0011 2.5E-08 67.1 12.4 98 133-236 6-155 (468)
238 TIGR03329 Phn_aa_oxid putative 97.5 0.0011 2.4E-08 67.0 12.3 48 181-232 189-236 (460)
239 PLN02507 glutathione reductase 97.5 0.0012 2.7E-08 67.3 12.5 98 134-236 26-182 (499)
240 TIGR03364 HpnW_proposed FAD de 97.5 0.0013 2.8E-08 64.3 12.3 31 135-165 2-32 (365)
241 PTZ00058 glutathione reductase 97.5 0.0012 2.7E-08 68.0 12.6 31 135-165 50-80 (561)
242 COG0445 GidA Flavin-dependent 97.5 0.00031 6.8E-09 69.8 7.6 98 134-232 5-157 (621)
243 KOG0404 Thioredoxin reductase 97.5 0.00085 1.8E-08 59.2 9.3 98 133-234 8-125 (322)
244 PRK11445 putative oxidoreducta 97.5 0.0019 4.1E-08 62.9 13.0 96 135-234 3-158 (351)
245 PF13454 NAD_binding_9: FAD-NA 97.5 0.0011 2.5E-08 56.5 10.1 41 189-231 114-155 (156)
246 PRK08274 tricarballylate dehyd 97.5 0.0019 4.2E-08 65.4 13.5 105 134-239 5-199 (466)
247 PRK11101 glpA sn-glycerol-3-ph 97.5 0.0015 3.3E-08 67.5 12.7 32 134-165 7-38 (546)
248 COG3380 Predicted NAD/FAD-depe 97.5 0.00048 1E-08 62.6 7.8 100 135-238 3-165 (331)
249 PRK06912 acoL dihydrolipoamide 97.5 0.0014 3E-08 66.3 12.3 32 135-166 2-33 (458)
250 KOG0399 Glutamate synthase [Am 97.4 0.00035 7.5E-09 74.2 7.7 91 132-233 1784-1882(2142)
251 PTZ00383 malate:quinone oxidor 97.4 0.0021 4.6E-08 65.3 13.2 64 177-243 213-282 (497)
252 PRK00711 D-amino acid dehydrog 97.4 0.0023 4.9E-08 63.8 12.9 56 184-242 210-265 (416)
253 COG1251 NirB NAD(P)H-nitrite r 97.4 0.00099 2.1E-08 68.5 10.2 127 133-271 3-143 (793)
254 PLN02464 glycerol-3-phosphate 97.4 0.0026 5.7E-08 66.7 13.5 33 133-165 71-103 (627)
255 PF00890 FAD_binding_2: FAD bi 97.4 0.0017 3.7E-08 64.7 11.5 58 176-234 142-204 (417)
256 PRK06292 dihydrolipoamide dehy 97.4 0.0014 3E-08 66.3 10.9 32 134-165 4-35 (460)
257 PRK07804 L-aspartate oxidase; 97.3 0.0025 5.4E-08 65.8 12.8 99 134-232 17-209 (541)
258 PRK07818 dihydrolipoamide dehy 97.3 0.0016 3.5E-08 66.0 11.2 32 134-165 5-36 (466)
259 PRK14727 putative mercuric red 97.3 0.0019 4.2E-08 65.6 11.8 99 133-236 16-165 (479)
260 PLN00093 geranylgeranyl diphos 97.3 0.0034 7.4E-08 63.2 13.2 99 133-233 39-199 (450)
261 PRK07121 hypothetical protein; 97.3 0.0039 8.5E-08 63.7 13.3 53 180-232 182-238 (492)
262 PRK08401 L-aspartate oxidase; 97.3 0.0034 7.4E-08 63.6 12.6 97 134-233 2-175 (466)
263 KOG2820 FAD-dependent oxidored 97.2 0.0042 9E-08 58.3 11.4 58 177-234 155-213 (399)
264 TIGR02485 CobZ_N-term precorri 97.2 0.0039 8.5E-08 62.5 12.3 62 179-240 127-191 (432)
265 COG1148 HdrA Heterodisulfide r 97.2 0.00093 2E-08 65.4 7.2 71 133-203 124-206 (622)
266 COG0493 GltD NADPH-dependent g 97.2 0.0011 2.3E-08 66.5 7.8 89 132-232 122-219 (457)
267 TIGR01812 sdhA_frdA_Gneg succi 97.2 0.005 1.1E-07 64.0 13.0 51 182-233 136-191 (566)
268 PF14721 AIF_C: Apoptosis-indu 97.2 0.0019 4.1E-08 51.4 7.3 32 349-381 100-131 (133)
269 TIGR01438 TGR thioredoxin and 97.1 0.0051 1.1E-07 62.6 12.3 30 135-164 4-33 (484)
270 PLN02985 squalene monooxygenas 97.1 0.0062 1.3E-07 62.4 12.8 33 133-165 43-75 (514)
271 PRK13977 myosin-cross-reactive 97.1 0.0078 1.7E-07 61.5 13.1 57 177-233 228-293 (576)
272 KOG2495 NADH-dehydrogenase (ub 97.1 0.0036 7.8E-08 60.6 9.8 101 132-235 54-172 (491)
273 COG0665 DadA Glycine/D-amino a 97.1 0.0091 2E-07 58.7 13.3 34 132-165 3-36 (387)
274 PRK08275 putative oxidoreducta 97.1 0.0085 1.8E-07 62.1 13.4 55 179-233 141-200 (554)
275 PRK09078 sdhA succinate dehydr 97.1 0.0076 1.6E-07 63.0 13.1 54 180-233 154-212 (598)
276 PTZ00139 Succinate dehydrogena 97.0 0.0084 1.8E-07 62.9 13.1 32 134-165 30-61 (617)
277 PLN02927 antheraxanthin epoxid 97.0 0.0083 1.8E-07 62.8 12.9 36 131-166 79-114 (668)
278 PRK07846 mycothione reductase; 97.0 0.0026 5.7E-08 64.1 8.9 92 135-236 3-143 (451)
279 TIGR01811 sdhA_Bsu succinate d 97.0 0.0078 1.7E-07 62.9 12.6 44 189-232 147-195 (603)
280 KOG2311 NAD/FAD-utilizing prot 97.0 0.0023 5E-08 62.6 7.7 33 133-165 28-60 (679)
281 PF13450 NAD_binding_8: NAD(P) 97.0 0.0012 2.5E-08 47.8 4.4 33 138-170 1-33 (68)
282 PRK13369 glycerol-3-phosphate 97.0 0.0073 1.6E-07 61.8 12.0 32 134-165 7-38 (502)
283 TIGR01423 trypano_reduc trypan 97.0 0.0066 1.4E-07 61.8 11.3 31 134-164 4-35 (486)
284 PRK08294 phenol 2-monooxygenas 97.0 0.01 2.3E-07 62.4 13.0 102 133-234 32-211 (634)
285 COG3634 AhpF Alkyl hydroperoxi 97.0 0.0026 5.7E-08 59.8 7.4 100 133-232 211-324 (520)
286 PRK08958 sdhA succinate dehydr 96.9 0.012 2.7E-07 61.3 13.2 53 181-233 149-206 (588)
287 TIGR00551 nadB L-aspartate oxi 96.9 0.0087 1.9E-07 61.0 11.9 56 177-233 130-189 (488)
288 PRK12266 glpD glycerol-3-phosp 96.9 0.01 2.3E-07 60.7 12.3 33 133-165 6-38 (508)
289 PRK06263 sdhA succinate dehydr 96.9 0.011 2.4E-07 61.2 12.4 54 180-233 139-197 (543)
290 COG1249 Lpd Pyruvate/2-oxoglut 96.9 0.0079 1.7E-07 60.3 10.9 95 134-235 5-149 (454)
291 PRK07573 sdhA succinate dehydr 96.9 0.012 2.6E-07 62.0 12.7 49 183-232 178-231 (640)
292 PRK06452 sdhA succinate dehydr 96.9 0.011 2.4E-07 61.4 12.2 52 180-232 141-197 (566)
293 PTZ00052 thioredoxin reductase 96.9 0.0032 6.9E-08 64.4 8.0 31 134-164 6-36 (499)
294 PRK06854 adenylylsulfate reduc 96.9 0.016 3.5E-07 60.7 13.3 32 134-165 12-45 (608)
295 PRK14106 murD UDP-N-acetylmura 96.8 0.0053 1.2E-07 61.9 9.3 82 132-238 4-85 (450)
296 PRK07057 sdhA succinate dehydr 96.8 0.016 3.5E-07 60.5 13.0 32 134-165 13-44 (591)
297 COG4529 Uncharacterized protei 96.8 0.019 4.1E-07 56.8 12.6 34 134-167 2-38 (474)
298 PRK06175 L-aspartate oxidase; 96.8 0.014 3.1E-07 58.5 12.1 54 178-232 131-188 (433)
299 PRK05945 sdhA succinate dehydr 96.8 0.019 4.1E-07 59.9 13.2 54 179-233 139-197 (575)
300 PLN00128 Succinate dehydrogena 96.8 0.018 3.8E-07 60.6 13.0 32 134-165 51-82 (635)
301 PRK08255 salicylyl-CoA 5-hydro 96.8 0.0037 8E-08 67.3 8.2 33 135-167 2-36 (765)
302 PF06039 Mqo: Malate:quinone o 96.8 0.013 2.9E-07 57.7 11.1 83 178-261 184-274 (488)
303 COG2509 Uncharacterized FAD-de 96.8 0.014 3E-07 57.2 11.0 92 152-246 150-246 (486)
304 TIGR03452 mycothione_red mycot 96.8 0.0051 1.1E-07 62.1 8.6 29 135-165 4-32 (452)
305 PRK12835 3-ketosteroid-delta-1 96.7 0.017 3.6E-07 60.2 11.9 58 183-240 221-283 (584)
306 PRK07803 sdhA succinate dehydr 96.7 0.023 5E-07 59.8 12.9 32 134-165 9-40 (626)
307 KOG2614 Kynurenine 3-monooxyge 96.7 0.0065 1.4E-07 58.7 7.8 34 133-166 2-35 (420)
308 PRK08205 sdhA succinate dehydr 96.7 0.032 6.8E-07 58.3 13.6 56 178-233 143-206 (583)
309 PRK13339 malate:quinone oxidor 96.6 0.044 9.6E-07 55.7 13.9 62 181-244 190-257 (497)
310 PRK06069 sdhA succinate dehydr 96.5 0.032 6.9E-07 58.2 12.7 31 135-165 7-40 (577)
311 PRK05335 tRNA (uracil-5-)-meth 96.5 0.0035 7.5E-08 61.8 5.1 35 134-168 3-37 (436)
312 PRK08641 sdhA succinate dehydr 96.5 0.029 6.3E-07 58.5 12.1 32 134-165 4-35 (589)
313 PRK07395 L-aspartate oxidase; 96.5 0.018 3.8E-07 59.6 10.4 31 134-165 10-40 (553)
314 KOG2852 Possible oxidoreductas 96.4 0.0082 1.8E-07 55.2 6.5 34 132-165 9-48 (380)
315 TIGR01470 cysG_Nterm siroheme 96.4 0.008 1.7E-07 53.7 6.4 79 132-238 8-87 (205)
316 PRK12843 putative FAD-binding 96.4 0.041 8.9E-07 57.3 12.6 59 181-240 227-290 (578)
317 PTZ00153 lipoamide dehydrogena 96.4 0.037 8.1E-07 58.2 12.2 32 134-165 117-148 (659)
318 PRK08071 L-aspartate oxidase; 96.4 0.025 5.4E-07 58.0 10.7 31 134-165 4-34 (510)
319 COG0578 GlpA Glycerol-3-phosph 96.3 0.033 7.2E-07 56.4 11.0 34 132-165 11-44 (532)
320 PLN02815 L-aspartate oxidase 96.3 0.033 7.1E-07 58.1 11.2 31 134-165 30-60 (594)
321 PRK08626 fumarate reductase fl 96.3 0.057 1.2E-06 57.1 12.9 32 134-165 6-37 (657)
322 KOG2755 Oxidoreductase [Genera 96.2 0.0076 1.6E-07 54.6 5.0 91 135-234 1-105 (334)
323 PRK06134 putative FAD-binding 96.2 0.061 1.3E-06 56.1 12.4 54 180-234 222-279 (581)
324 PRK07512 L-aspartate oxidase; 96.2 0.035 7.6E-07 57.0 10.4 52 180-232 141-196 (513)
325 KOG1800 Ferredoxin/adrenodoxin 96.2 0.056 1.2E-06 51.8 10.7 90 133-234 20-121 (468)
326 KOG2404 Fumarate reductase, fl 96.2 0.041 8.9E-07 51.5 9.6 50 190-240 160-215 (477)
327 TIGR02061 aprA adenosine phosp 96.1 0.1 2.2E-06 54.6 13.7 31 135-165 1-35 (614)
328 PRK12842 putative succinate de 96.1 0.011 2.4E-07 61.5 6.6 103 131-234 155-276 (574)
329 KOG2415 Electron transfer flav 96.1 0.037 8.1E-07 53.5 9.3 104 132-235 75-258 (621)
330 PRK09231 fumarate reductase fl 96.1 0.072 1.6E-06 55.6 12.5 31 135-165 6-38 (582)
331 COG2081 Predicted flavoprotein 96.1 0.0052 1.1E-07 59.2 3.6 48 52-99 117-166 (408)
332 TIGR01176 fum_red_Fp fumarate 96.0 0.086 1.9E-06 54.9 12.6 31 135-165 5-37 (580)
333 COG2907 Predicted NAD/FAD-bind 95.9 0.048 1E-06 51.7 9.0 33 132-165 7-39 (447)
334 PRK06718 precorrin-2 dehydroge 95.9 0.029 6.2E-07 50.0 7.3 33 132-164 9-41 (202)
335 KOG0029 Amine oxidase [Seconda 95.9 0.012 2.5E-07 59.9 5.2 39 132-170 14-52 (501)
336 KOG3851 Sulfide:quinone oxidor 95.9 0.004 8.6E-08 58.0 1.7 103 132-240 38-152 (446)
337 PTZ00306 NADH-dependent fumara 95.8 0.089 1.9E-06 59.4 12.5 32 134-165 410-441 (1167)
338 PRK12839 hypothetical protein; 95.8 0.11 2.4E-06 54.1 12.0 59 181-239 220-283 (572)
339 PRK09077 L-aspartate oxidase; 95.8 0.15 3.2E-06 52.8 12.9 31 134-165 9-39 (536)
340 PF02558 ApbA: Ketopantoate re 95.7 0.023 5.1E-07 47.9 5.6 84 136-240 1-86 (151)
341 PRK01710 murD UDP-N-acetylmura 95.7 0.052 1.1E-06 54.9 9.0 83 132-239 13-95 (458)
342 PRK07843 3-ketosteroid-delta-1 95.6 0.02 4.3E-07 59.4 6.0 107 132-240 159-277 (557)
343 PRK02705 murD UDP-N-acetylmura 95.6 0.037 7.9E-07 56.0 7.7 85 135-239 2-86 (459)
344 PRK11883 protoporphyrinogen ox 95.6 0.016 3.5E-07 58.2 5.1 36 134-169 1-38 (451)
345 PRK12837 3-ketosteroid-delta-1 95.6 0.14 3E-06 52.6 11.9 31 134-165 8-38 (513)
346 PRK07233 hypothetical protein; 95.5 0.018 3.8E-07 57.6 5.0 35 135-169 1-35 (434)
347 PRK12834 putative FAD-binding 95.5 0.19 4.1E-06 52.1 12.7 33 134-166 5-37 (549)
348 PRK12844 3-ketosteroid-delta-1 95.4 0.23 5E-06 51.6 12.9 32 134-165 7-38 (557)
349 COG0446 HcaD Uncharacterized N 95.4 0.1 2.2E-06 51.6 9.9 96 136-236 1-109 (415)
350 PRK04308 murD UDP-N-acetylmura 95.4 0.05 1.1E-06 54.8 7.8 81 132-240 4-86 (445)
351 COG3349 Uncharacterized conser 95.4 0.021 4.5E-07 57.0 4.8 37 134-170 1-37 (485)
352 PTZ00367 squalene epoxidase; P 95.4 0.029 6.4E-07 58.0 6.1 33 134-166 34-66 (567)
353 PLN02268 probable polyamine ox 95.4 0.022 4.8E-07 57.1 5.2 37 134-170 1-37 (435)
354 PRK02472 murD UDP-N-acetylmura 95.3 0.054 1.2E-06 54.6 7.8 82 132-238 4-85 (447)
355 PRK12845 3-ketosteroid-delta-1 95.3 0.17 3.7E-06 52.6 11.4 58 181-239 223-285 (564)
356 COG1233 Phytoene dehydrogenase 95.3 0.025 5.4E-07 57.7 5.1 36 133-168 3-38 (487)
357 COG0771 MurD UDP-N-acetylmuram 95.2 0.065 1.4E-06 53.3 7.6 82 133-240 7-88 (448)
358 PRK07208 hypothetical protein; 95.1 0.03 6.6E-07 56.9 5.3 38 132-169 3-40 (479)
359 PRK13800 putative oxidoreducta 95.1 0.27 5.9E-06 54.0 12.9 32 134-165 14-45 (897)
360 PRK05562 precorrin-2 dehydroge 95.1 0.063 1.4E-06 48.4 6.6 34 132-165 24-57 (223)
361 KOG2844 Dimethylglycine dehydr 95.0 0.15 3.2E-06 52.4 9.5 55 177-233 189-243 (856)
362 PF13434 K_oxygenase: L-lysine 95.0 0.057 1.2E-06 52.3 6.5 102 135-236 4-162 (341)
363 COG2509 Uncharacterized FAD-de 95.0 0.049 1.1E-06 53.4 5.9 60 40-99 163-229 (486)
364 TIGR03385 CoA_CoA_reduc CoA-di 95.0 0.062 1.3E-06 53.8 6.9 49 53-101 186-234 (427)
365 PRK00421 murC UDP-N-acetylmura 94.9 0.053 1.2E-06 54.9 6.4 79 131-239 5-84 (461)
366 TIGR02733 desat_CrtD C-3',4' d 94.9 0.036 7.7E-07 56.6 5.1 35 134-168 2-36 (492)
367 PRK06719 precorrin-2 dehydroge 94.9 0.047 1E-06 46.6 5.0 32 132-163 12-43 (157)
368 PF13241 NAD_binding_7: Putati 94.9 0.024 5.2E-07 44.6 3.0 35 132-166 6-40 (103)
369 PRK13800 putative oxidoreducta 94.8 0.039 8.5E-07 60.6 5.5 26 247-272 361-386 (897)
370 TIGR00562 proto_IX_ox protopor 94.8 0.04 8.7E-07 55.7 5.0 35 134-168 3-41 (462)
371 TIGR03378 glycerol3P_GlpB glyc 94.7 0.029 6.2E-07 55.5 3.7 66 34-99 250-321 (419)
372 PF02852 Pyr_redox_dim: Pyridi 94.7 0.075 1.6E-06 42.3 5.5 56 350-405 50-110 (110)
373 TIGR02734 crtI_fam phytoene de 94.7 0.036 7.7E-07 56.8 4.4 33 136-168 1-33 (502)
374 KOG1298 Squalene monooxygenase 94.7 0.035 7.6E-07 53.2 3.9 34 133-166 45-78 (509)
375 COG0562 Glf UDP-galactopyranos 94.6 0.051 1.1E-06 50.9 4.9 40 135-174 3-42 (374)
376 PRK05708 2-dehydropantoate 2-r 94.6 0.11 2.3E-06 49.6 7.1 33 134-166 3-35 (305)
377 PRK08275 putative oxidoreducta 94.5 0.048 1E-06 56.6 4.9 51 51-101 142-201 (554)
378 PLN02576 protoporphyrinogen ox 94.5 0.054 1.2E-06 55.3 5.3 37 133-169 12-49 (496)
379 TIGR03862 flavo_PP4765 unchara 94.4 0.1 2.2E-06 51.0 6.8 49 52-100 92-141 (376)
380 TIGR02731 phytoene_desat phyto 94.4 0.052 1.1E-06 54.8 4.9 35 135-169 1-35 (453)
381 PRK06249 2-dehydropantoate 2-r 94.4 0.29 6.3E-06 46.8 9.6 32 134-165 6-37 (313)
382 PRK03369 murD UDP-N-acetylmura 94.3 0.13 2.8E-06 52.5 7.4 79 131-239 10-88 (488)
383 PRK12416 protoporphyrinogen ox 94.3 0.057 1.2E-06 54.7 4.8 36 134-169 2-43 (463)
384 PF02737 3HCDH_N: 3-hydroxyacy 94.2 0.075 1.6E-06 46.4 4.9 36 135-170 1-36 (180)
385 PLN02612 phytoene desaturase 94.2 0.2 4.3E-06 52.2 8.8 57 175-231 308-364 (567)
386 PF03486 HI0933_like: HI0933-l 94.2 0.079 1.7E-06 52.6 5.5 48 53-100 116-166 (409)
387 TIGR03862 flavo_PP4765 unchara 94.2 0.47 1E-05 46.5 10.7 96 145-245 56-162 (376)
388 PLN03000 amine oxidase 94.0 0.062 1.3E-06 57.7 4.6 40 133-172 184-223 (881)
389 COG1232 HemY Protoporphyrinoge 94.0 0.073 1.6E-06 53.1 4.8 35 134-168 1-37 (444)
390 KOG2853 Possible oxidoreductas 94.0 1.2 2.6E-05 42.3 12.3 34 132-165 85-122 (509)
391 PRK08071 L-aspartate oxidase; 93.9 0.084 1.8E-06 54.1 5.3 54 247-302 332-386 (510)
392 PRK06854 adenylylsulfate reduc 93.9 0.078 1.7E-06 55.6 5.1 46 55-100 141-195 (608)
393 TIGR00031 UDP-GALP_mutase UDP- 93.9 0.081 1.8E-06 51.8 4.9 35 135-169 3-37 (377)
394 PRK07804 L-aspartate oxidase; 93.9 0.075 1.6E-06 54.9 4.9 54 247-302 357-411 (541)
395 PRK00141 murD UDP-N-acetylmura 93.9 0.15 3.2E-06 51.8 6.9 79 132-239 14-92 (473)
396 COG1231 Monoamine oxidase [Ami 93.9 0.088 1.9E-06 51.8 4.9 41 132-172 6-46 (450)
397 TIGR02352 thiamin_ThiO glycine 93.9 0.25 5.5E-06 47.3 8.3 58 174-233 136-193 (337)
398 PLN02529 lysine-specific histo 93.8 0.091 2E-06 55.9 5.3 35 133-167 160-194 (738)
399 PRK15116 sulfur acceptor prote 93.7 0.088 1.9E-06 48.9 4.6 34 132-165 29-63 (268)
400 COG1893 ApbA Ketopantoate redu 93.7 0.21 4.5E-06 47.7 7.1 81 135-237 2-83 (307)
401 PRK12921 2-dehydropantoate 2-r 93.6 0.31 6.8E-06 46.2 8.3 30 135-164 2-31 (305)
402 TIGR02732 zeta_caro_desat caro 93.6 0.096 2.1E-06 53.2 5.0 35 135-169 1-35 (474)
403 TIGR01320 mal_quin_oxido malat 93.6 0.088 1.9E-06 53.6 4.7 31 135-165 2-34 (483)
404 PRK09077 L-aspartate oxidase; 93.6 0.12 2.5E-06 53.5 5.6 54 247-302 353-407 (536)
405 PRK09231 fumarate reductase fl 93.5 0.12 2.6E-06 53.9 5.7 55 246-302 357-412 (582)
406 TIGR02730 carot_isom carotene 93.5 0.1 2.2E-06 53.3 5.0 34 135-168 2-35 (493)
407 TIGR00551 nadB L-aspartate oxi 93.4 0.14 3E-06 52.3 5.8 53 247-302 333-387 (488)
408 COG1053 SdhA Succinate dehydro 93.3 0.52 1.1E-05 48.8 9.8 32 134-165 7-38 (562)
409 PRK14192 bifunctional 5,10-met 93.2 0.24 5.2E-06 46.6 6.6 33 132-164 158-191 (283)
410 PRK04690 murD UDP-N-acetylmura 93.2 0.33 7.2E-06 49.2 8.1 81 132-239 7-87 (468)
411 PLN02487 zeta-carotene desatur 93.2 0.13 2.9E-06 53.2 5.3 35 134-168 76-110 (569)
412 TIGR02731 phytoene_desat phyto 93.1 0.4 8.7E-06 48.3 8.7 57 175-231 213-274 (453)
413 PF01266 DAO: FAD dependent ox 93.1 0.1 2.2E-06 50.2 4.2 48 52-100 153-203 (358)
414 PLN02328 lysine-specific histo 93.0 0.15 3.2E-06 54.7 5.4 36 133-168 238-273 (808)
415 KOG1346 Programmed cell death 93.0 0.15 3.2E-06 49.5 4.8 54 186-243 268-322 (659)
416 TIGR02730 carot_isom carotene 92.9 0.43 9.3E-06 48.8 8.6 57 175-232 229-285 (493)
417 PTZ00363 rab-GDP dissociation 92.9 0.53 1.2E-05 47.3 8.9 60 175-234 232-291 (443)
418 PF01210 NAD_Gly3P_dh_N: NAD-d 92.9 0.14 3E-06 43.7 4.1 32 135-166 1-32 (157)
419 PRK06263 sdhA succinate dehydr 92.9 0.17 3.7E-06 52.4 5.5 52 50-101 138-198 (543)
420 PRK08401 L-aspartate oxidase; 92.8 0.18 4E-06 51.1 5.6 50 50-101 124-176 (466)
421 KOG2665 Predicted FAD-dependen 92.8 0.7 1.5E-05 43.5 8.7 65 181-246 202-269 (453)
422 COG3573 Predicted oxidoreducta 92.7 1.1 2.4E-05 42.4 10.0 32 134-165 6-37 (552)
423 PF01488 Shikimate_DH: Shikima 92.7 0.47 1E-05 39.2 7.0 34 132-165 11-45 (135)
424 PF03721 UDPG_MGDP_dh_N: UDP-g 92.7 0.35 7.6E-06 42.4 6.5 79 135-232 2-87 (185)
425 PLN02568 polyamine oxidase 92.6 0.18 3.9E-06 52.0 5.3 37 132-168 4-45 (539)
426 PLN02612 phytoene desaturase 92.5 0.19 4.1E-06 52.3 5.3 37 132-168 92-128 (567)
427 PRK07819 3-hydroxybutyryl-CoA 92.4 0.2 4.3E-06 47.3 5.0 37 134-170 6-42 (286)
428 TIGR01082 murC UDP-N-acetylmur 92.4 0.3 6.5E-06 49.3 6.5 74 135-238 1-75 (448)
429 KOG1335 Dihydrolipoamide dehyd 92.4 1.2 2.6E-05 43.0 9.9 37 132-168 38-74 (506)
430 TIGR01176 fum_red_Fp fumarate 92.4 0.17 3.7E-06 52.7 4.9 55 246-302 356-411 (580)
431 TIGR02734 crtI_fam phytoene de 92.2 0.59 1.3E-05 47.8 8.5 57 175-232 219-275 (502)
432 PF00670 AdoHcyase_NAD: S-aden 92.2 0.33 7.2E-06 41.3 5.4 38 129-166 19-56 (162)
433 PRK05257 malate:quinone oxidor 92.2 0.17 3.7E-06 51.6 4.5 34 135-168 7-42 (494)
434 PRK07512 L-aspartate oxidase; 92.1 0.23 5E-06 51.0 5.3 53 247-302 341-395 (513)
435 TIGR01087 murD UDP-N-acetylmur 92.1 0.46 1E-05 47.6 7.4 78 135-238 1-79 (433)
436 PF13454 NAD_binding_9: FAD-NA 92.1 0.27 5.8E-06 41.8 4.9 37 61-98 117-155 (156)
437 KOG1276 Protoporphyrinogen oxi 92.0 0.22 4.8E-06 48.6 4.7 38 131-168 9-48 (491)
438 PRK08229 2-dehydropantoate 2-r 91.9 0.81 1.8E-05 44.2 8.7 31 134-164 3-33 (341)
439 KOG0685 Flavin-containing amin 91.8 0.29 6.2E-06 48.5 5.2 41 132-172 20-61 (498)
440 PRK06452 sdhA succinate dehydr 91.7 0.25 5.3E-06 51.4 5.1 50 51-100 141-198 (566)
441 PLN02676 polyamine oxidase 91.7 0.27 5.9E-06 50.1 5.3 38 132-169 25-63 (487)
442 TIGR02352 thiamin_ThiO glycine 91.5 0.37 8.1E-06 46.1 5.8 48 53-101 144-194 (337)
443 KOG4254 Phytoene desaturase [C 91.5 1.5 3.3E-05 43.3 9.6 53 177-230 266-318 (561)
444 PTZ00363 rab-GDP dissociation 91.3 0.24 5.1E-06 49.8 4.3 38 134-171 5-42 (443)
445 TIGR01811 sdhA_Bsu succinate d 91.3 0.33 7.2E-06 50.8 5.5 51 247-301 370-422 (603)
446 cd01080 NAD_bind_m-THF_DH_Cycl 91.2 0.79 1.7E-05 39.5 6.8 34 132-165 43-77 (168)
447 PLN02815 L-aspartate oxidase 91.1 0.35 7.5E-06 50.5 5.5 51 247-301 377-430 (594)
448 TIGR01812 sdhA_frdA_Gneg succi 91.1 0.34 7.4E-06 50.4 5.4 49 53-101 136-192 (566)
449 PRK07066 3-hydroxybutyryl-CoA 91.1 0.47 1E-05 45.5 5.9 37 133-169 7-43 (321)
450 PF02254 TrkA_N: TrkA-N domain 91.1 0.79 1.7E-05 36.4 6.5 47 136-195 1-47 (116)
451 PRK03803 murD UDP-N-acetylmura 91.0 0.71 1.5E-05 46.5 7.4 80 132-239 5-86 (448)
452 PF00732 GMC_oxred_N: GMC oxid 90.9 0.27 5.9E-06 46.4 4.2 36 135-170 2-38 (296)
453 PRK06847 hypothetical protein; 90.8 0.61 1.3E-05 45.6 6.7 47 54-100 115-163 (375)
454 KOG0405 Pyridine nucleotide-di 90.8 1.9 4.1E-05 41.2 9.3 98 135-237 22-169 (478)
455 PRK14573 bifunctional D-alanyl 90.8 0.52 1.1E-05 51.3 6.7 76 133-238 4-80 (809)
456 PRK04148 hypothetical protein; 90.8 0.92 2E-05 37.4 6.5 35 132-167 16-50 (134)
457 TIGR03197 MnmC_Cterm tRNA U-34 90.7 0.62 1.3E-05 45.8 6.6 56 175-233 135-190 (381)
458 PRK08293 3-hydroxybutyryl-CoA 90.7 0.48 1E-05 44.7 5.5 36 134-169 4-39 (287)
459 PRK08641 sdhA succinate dehydr 90.7 0.32 6.9E-06 50.9 4.7 52 247-301 355-407 (589)
460 PRK06175 L-aspartate oxidase; 90.6 0.32 6.8E-06 48.9 4.5 54 246-302 330-385 (433)
461 COG1206 Gid NAD(FAD)-utilizing 90.6 0.27 5.9E-06 46.4 3.6 33 134-166 4-36 (439)
462 PF00899 ThiF: ThiF family; I 90.5 0.32 7E-06 40.1 3.8 33 133-165 2-35 (135)
463 TIGR03197 MnmC_Cterm tRNA U-34 90.5 0.43 9.4E-06 46.9 5.3 45 56-101 145-191 (381)
464 PRK06069 sdhA succinate dehydr 90.5 0.29 6.4E-06 51.0 4.3 49 53-101 144-201 (577)
465 COG2085 Predicted dinucleotide 90.4 0.48 1E-05 42.0 4.8 91 134-254 2-92 (211)
466 PRK07573 sdhA succinate dehydr 90.4 0.37 8.1E-06 50.8 5.0 46 55-100 179-232 (640)
467 PRK09260 3-hydroxybutyryl-CoA 90.1 0.61 1.3E-05 44.0 5.7 36 134-169 2-37 (288)
468 PRK07395 L-aspartate oxidase; 90.1 0.44 9.5E-06 49.4 5.1 54 247-301 347-400 (553)
469 TIGR02061 aprA adenosine phosp 90.0 0.39 8.4E-06 50.3 4.6 46 56-101 136-192 (614)
470 PRK08626 fumarate reductase fl 90.0 0.39 8.5E-06 50.8 4.8 50 52-101 164-221 (657)
471 TIGR00561 pntA NAD(P) transhyd 89.9 1.5 3.3E-05 44.6 8.6 34 133-166 164-197 (511)
472 cd00401 AdoHcyase S-adenosyl-L 89.7 0.63 1.4E-05 46.1 5.6 36 131-166 200-235 (413)
473 PRK06834 hypothetical protein; 89.6 0.97 2.1E-05 46.1 7.1 48 54-101 108-157 (488)
474 TIGR02354 thiF_fam2 thiamine b 89.5 0.64 1.4E-05 41.3 5.1 34 132-165 20-54 (200)
475 COG0287 TyrA Prephenate dehydr 89.5 0.82 1.8E-05 42.9 6.0 95 133-254 3-97 (279)
476 cd05211 NAD_bind_Glu_Leu_Phe_V 89.5 2.3 4.9E-05 38.3 8.6 85 132-231 22-107 (217)
477 PRK02006 murD UDP-N-acetylmura 89.4 1 2.2E-05 46.1 7.2 35 132-166 6-40 (498)
478 PRK12842 putative succinate de 89.3 0.5 1.1E-05 49.3 4.8 35 133-167 9-43 (574)
479 PRK07803 sdhA succinate dehydr 89.2 0.61 1.3E-05 49.1 5.4 40 61-100 166-213 (626)
480 COG1648 CysG Siroheme synthase 89.1 0.7 1.5E-05 41.4 4.9 34 132-165 11-44 (210)
481 COG0240 GpsA Glycerol-3-phosph 89.0 0.56 1.2E-05 44.6 4.4 89 134-241 2-91 (329)
482 PF02826 2-Hacid_dh_C: D-isome 88.9 0.79 1.7E-05 39.9 5.1 35 132-166 35-69 (178)
483 COG0569 TrkA K+ transport syst 88.8 0.63 1.4E-05 42.2 4.6 33 134-166 1-33 (225)
484 PRK03806 murD UDP-N-acetylmura 88.8 1.2 2.6E-05 44.7 7.0 79 132-239 5-83 (438)
485 PRK05329 anaerobic glycerol-3- 88.7 0.59 1.3E-05 46.6 4.7 32 134-165 3-34 (422)
486 PRK06129 3-hydroxyacyl-CoA deh 88.6 0.58 1.3E-05 44.6 4.4 35 134-168 3-37 (308)
487 COG1004 Ugd Predicted UDP-gluc 88.6 1.1 2.4E-05 43.5 6.2 50 135-185 2-59 (414)
488 TIGR03364 HpnW_proposed FAD de 88.5 1 2.3E-05 43.8 6.2 44 55-101 154-198 (365)
489 PF06100 Strep_67kDa_ant: Stre 88.4 7.4 0.00016 39.2 11.9 57 177-233 209-274 (500)
490 TIGR02732 zeta_caro_desat caro 88.3 2.2 4.7E-05 43.4 8.6 58 175-232 219-283 (474)
491 PRK04663 murD UDP-N-acetylmura 88.3 1.4 3.1E-05 44.2 7.2 75 134-238 8-85 (438)
492 PLN02487 zeta-carotene desatur 88.3 2.1 4.6E-05 44.5 8.5 60 173-232 293-359 (569)
493 TIGR01320 mal_quin_oxido malat 88.2 2.3 4.9E-05 43.4 8.6 68 175-244 178-250 (483)
494 TIGR02853 spore_dpaA dipicolin 88.2 0.73 1.6E-05 43.5 4.7 35 132-166 150-184 (287)
495 PLN02545 3-hydroxybutyryl-CoA 88.1 1 2.2E-05 42.6 5.7 37 133-169 4-40 (295)
496 PRK08773 2-octaprenyl-3-methyl 88.0 1.3 2.8E-05 43.6 6.7 45 56-100 123-169 (392)
497 PF00070 Pyr_redox: Pyridine n 87.9 0.4 8.8E-06 35.5 2.3 33 52-84 46-80 (80)
498 PRK05945 sdhA succinate dehydr 87.8 0.7 1.5E-05 48.2 4.7 50 52-101 141-198 (575)
499 PRK06035 3-hydroxyacyl-CoA deh 87.7 0.73 1.6E-05 43.5 4.4 35 134-168 4-38 (291)
500 PRK07333 2-octaprenyl-6-methox 87.6 1.4 3E-05 43.5 6.6 48 54-101 119-168 (403)
No 1
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.5e-56 Score=440.87 Aligned_cols=366 Identities=27% Similarity=0.402 Sum_probs=317.3
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++++||||++|+++||+||+||+.++.+...... ..+..+++.+.+|+++.+++|+.+|++++.|.+
T Consensus 27 ~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~ 93 (396)
T PRK09754 27 FTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANWWQENNVHLHSGVTIKTLGRDTRELVL 93 (396)
T ss_pred CCCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHHHHHCCCEEEcCCEEEEEECCCCEEEE
Confidence 4689999999999999999999987765322211 135678899999999999899999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 161 (414)
++|+++.||+||||||++++.+| .++...++++++++..++..+...+..+++++|||+|++|+|+|..|+++|.+||+
T Consensus 94 ~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtl 172 (396)
T PRK09754 94 TNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTV 172 (396)
T ss_pred CCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 99999999999999999987544 34445678999999999999888778899999999999999999999999999999
Q ss_pred EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241 (414)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (414)
+++.++++++.+++...+.+.+.+++.||++++++.+++++. ++. ..+.+.+|++++||.||+++|.+||+.+++++
T Consensus 173 v~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~ 249 (396)
T PRK09754 173 IELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREA 249 (396)
T ss_pred EecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhc
Confidence 999999998778889999999999999999999999999974 222 35778899999999999999999998888888
Q ss_pred CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccCC
Q 014997 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEY 321 (414)
Q Consensus 242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~~ 321 (414)
++..+ ++|.||+++||+.|||||+|||+..+.+ .|...+.++|.+|..||+.||+||++. ..+|+.+||||+++|+.
T Consensus 250 gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~-~~~~~~~p~~~~~~~~~ 326 (396)
T PRK09754 250 NLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGL-PLPLLPPPWFWSDQYSD 326 (396)
T ss_pred CCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCC-CCCCCCCCceEEEeCCc
Confidence 98775 6799999999999999999999988766 677777889999999999999999974 56789999999999987
Q ss_pred CCCCcceeeeEeecCCC-cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCC
Q 014997 322 EGSPRKVWWQFFGDNVG-ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQAS 395 (414)
Q Consensus 322 ~g~~~~~~~~~~G~~~~-~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 395 (414)
+ ++++|.... +.+.+++.+ .++..+|+++|+|+|+++ +|+++++..++++++.+.++++..+.|+.
T Consensus 327 ~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (396)
T PRK09754 327 N-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGREIRPIRKWIQSGKTFDAKLLIDEN 394 (396)
T ss_pred c-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHHHHHHHHHHHCCCCCCHHHhcCcc
Confidence 5 899997544 344566654 457778889999999996 89999999999999999999998888774
No 2
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=4.8e-55 Score=415.15 Aligned_cols=377 Identities=46% Similarity=0.780 Sum_probs=340.2
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
+.++|+++++|.++||+||.||+-++. .|+++.++..+||++.+|++++++.|+++|.+.++|.+
T Consensus 98 ~~~ri~l~~~~~~~pydr~~Ls~~~~~---------------~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~ 162 (478)
T KOG1336|consen 98 FTERIALVKREYLLPYDRARLSKFLLT---------------VGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVL 162 (478)
T ss_pred CCcceEEEeccccCcccchhcccceee---------------ccccccccChhhHhhcCceEEEcceeEEeeccccEEEe
Confidence 578999999999999999999984443 23334578899999999999999999999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 161 (414)
.+|+.+.|++|+||||+.++.+ +++|.+.++++++++++++..+...+..+++|+++|+|++|+|+|..|...+.+||+
T Consensus 163 ~~Ge~~kys~LilATGs~~~~l-~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~ 241 (478)
T KOG1336|consen 163 GNGETLKYSKLIIATGSSAKTL-DIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTV 241 (478)
T ss_pred CCCceeecceEEEeecCccccC-CCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEE
Confidence 9999999999999999988765 468888999999999999999988888899999999999999999999999999999
Q ss_pred EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241 (414)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (414)
|++.+.++++.+.+.+.+.+++++++.||++++++.+.+++.+++|++..|.+.||++++||+|++++|.+|++++++.
T Consensus 242 V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~- 320 (478)
T KOG1336|consen 242 VFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK- 320 (478)
T ss_pred EccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc-
Confidence 9999999999999999999999999999999999999999988889999999999999999999999999999999986
Q ss_pred CCcc-cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeccC
Q 014997 242 GLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 320 (414)
Q Consensus 242 gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~~ 320 (414)
+..+ ..|+|.||+++||++|||||+|||+.++.+.++...+++|++.|+.+|+.+...+.......++++||||+..|+
T Consensus 321 g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~~~~lPyf~t~~f~ 400 (478)
T KOG1336|consen 321 GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDAYDYLPYFYTRFFS 400 (478)
T ss_pred cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcccccccchHHHHHhh
Confidence 5555 378999999999999999999999999998888887899999999999987777765444447799999999998
Q ss_pred CCCCCcceeeeEeecCCCcEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChhhhcCCCcHHH
Q 014997 321 YEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEE 399 (414)
Q Consensus 321 ~~g~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 399 (414)
.. |+++|....+.++.|+.+ .+|..||++ +..+++.+..+..+....+..+++.++.+..-++.++++.+.
T Consensus 401 ~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~ 472 (478)
T KOG1336|consen 401 LS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSF 472 (478)
T ss_pred hh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhh
Confidence 64 899999888888888886 568999999 888888887788888899999999999999988888888888
Q ss_pred HHHH
Q 014997 400 ALEI 403 (414)
Q Consensus 400 ~~~~ 403 (414)
+...
T Consensus 473 ~~~~ 476 (478)
T KOG1336|consen 473 WLTI 476 (478)
T ss_pred HHhh
Confidence 7764
No 3
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=6.6e-47 Score=400.34 Aligned_cols=356 Identities=22% Similarity=0.360 Sum_probs=295.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++.+||||++|++++|+|++||+ ++.+. ...+++ .....+|++++||+++++++|+.||++++.|++
T Consensus 23 ~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~ 89 (785)
T TIGR02374 23 HMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKHGITLYTGETVIQIDTDQKQVIT 89 (785)
T ss_pred CCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEE
Confidence 35699999999999999999998 77653 233333 356789999999999999999999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 161 (414)
.+|+++.||+||||||+.|+. |+++|.+.++++++++++++..+++....+++++|||||++|+|+|..|+++|.+|++
T Consensus 90 ~~g~~~~yD~LVlATGs~p~~-p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv 168 (785)
T TIGR02374 90 DAGRTLSYDKLILATGSYPFI-LPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSV 168 (785)
T ss_pred CCCcEeeCCEEEECCCCCcCC-CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999874 5578888889999999999999888877889999999999999999999999999999
Q ss_pred EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhc
Q 014997 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 241 (414)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~ 241 (414)
+++.++++++.+++..+..+.+.+++.||++++++.++++.. ++....+.+++|+++++|+||+++|.+|+.++++++
T Consensus 169 v~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~ 246 (785)
T TIGR02374 169 IHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSA 246 (785)
T ss_pred EccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhc
Confidence 999999998889999999999999999999999999999974 345567889999999999999999999999998899
Q ss_pred CCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee-eeccC
Q 014997 242 GLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY-SRVFE 320 (414)
Q Consensus 242 gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~-~~~~~ 320 (414)
++..+ ++|.||++|||+.|||||+|||+.++...++ .|..|..||+.+|.||++....+|...+... .+.++
T Consensus 247 gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g 319 (785)
T TIGR02374 247 GIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLG 319 (785)
T ss_pred CCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECC
Confidence 99886 7899999999999999999999997665433 5777999999999999975435565544322 12333
Q ss_pred CCCCCcceeeeEeecCCC----cEE-EEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997 321 YEGSPRKVWWQFFGDNVG----ETI-EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 388 (414)
Q Consensus 321 ~~g~~~~~~~~~~G~~~~----~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (414)
+. +..+|.... ..+ ........|.++++++++|+|+++ +++..+...++++++++..++.
T Consensus 320 ~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~~~~L~~li~~~~~l~~ 384 (785)
T TIGR02374 320 VD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSDYGRLLDMVLKQADISE 384 (785)
T ss_pred cc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHHHHHHHHHHHcCCCCCc
Confidence 22 344454321 122 222223558899999999999997 7888899999999987765543
No 4
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=1.6e-48 Score=386.13 Aligned_cols=355 Identities=23% Similarity=0.384 Sum_probs=305.5
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 82 (414)
Q Consensus 3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~ 82 (414)
.-.|||+++|++++|+|+.||. ++.+ ++..+++ .+...+||+++||+++.+.+|+.||++++.|+++
T Consensus 29 ~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~edi-----------~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~ 95 (793)
T COG1251 29 LYDITVFGEEPRPNYNRILLSS-VLAG-EKTAEDI-----------SLNRNDWYEENGITLYTGEKVIQIDRANKVVTTD 95 (793)
T ss_pred cceEEEeccCCCccccceeecc-ccCC-CccHHHH-----------hccchhhHHHcCcEEEcCCeeEEeccCcceEEcc
Confidence 4579999999999999999998 8877 3444444 4678999999999999999999999999999999
Q ss_pred CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997 83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162 (414)
Q Consensus 83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv 162 (414)
.|.++.||+|||||||.|..+| +||.+.++++.+++++|...+....+..++.+|||||..|+|+|..|...|.+++|+
T Consensus 96 ~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vv 174 (793)
T COG1251 96 AGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVV 174 (793)
T ss_pred CCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEE
Confidence 9999999999999999998554 899999999999999999998887666778899999999999999999999999999
Q ss_pred eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
+..+.++.+++++.....+++.++++|++++++....++.. .+.+..+.++||..+++|+||+++|.+||.++..++|
T Consensus 175 h~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aG 252 (793)
T COG1251 175 HIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAG 252 (793)
T ss_pred eecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcC
Confidence 99999999999999999999999999999999998888864 5677799999999999999999999999999999999
Q ss_pred CcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC-CCceeeeccCC
Q 014997 243 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY-LPYFYSRVFEY 321 (414)
Q Consensus 243 l~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~-~p~~~~~~~~~ 321 (414)
+..++ +|+||++||||+|+|||+|+|+.+....+|. +.-+..||+.+|.++.+.....|.. +++ ..+..
T Consensus 253 lavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGL------VaP~yeq~~v~a~hl~~~~~~~y~gsv~s---tkLKv 322 (793)
T COG1251 253 LAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGL------VAPLYEQAKVLADHLCGGEAEAYEGSVTS---TKLKV 322 (793)
T ss_pred cCcCC-CeeecccccccCCCeeehhhHHHhcCcccee------hhHHHHHHHHHHHHhccCcccccccccch---hhhcc
Confidence 99985 9999999999999999999999998887775 4448899999999999765444433 332 33334
Q ss_pred CCCCcceeeeEeecCC----C-cEEEEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997 322 EGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 388 (414)
Q Consensus 322 ~g~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (414)
.|.. +-..|+.. . .++++......|.++.+++|+|+|+++ .|+..+-..+..|+.++..++.
T Consensus 323 ~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GDt~d~~~l~~li~~~~~~se 389 (793)
T COG1251 323 SGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGDTSDGGWLLDLILKGADISE 389 (793)
T ss_pred cccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-EeecccchHHHHHHhcCCCccc
Confidence 4422 33344422 1 234444445779999999999999997 8999999999999998888876
No 5
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=4.4e-46 Score=393.66 Aligned_cols=356 Identities=20% Similarity=0.338 Sum_probs=289.8
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC
Q 014997 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 82 (414)
Q Consensus 3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~ 82 (414)
+.+||||++|++++|+|+.|++ ++.+ ...+++ .....+|++++||+++.+++|+.||++.+.|++.
T Consensus 30 ~~~Itvi~~e~~~~Y~r~~L~~-~~~~--~~~~~l-----------~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~ 95 (847)
T PRK14989 30 NFDITVFCEEPRIAYDRVHLSS-YFSH--HTAEEL-----------SLVREGFYEKHGIKVLVGERAITINRQEKVIHSS 95 (847)
T ss_pred CCeEEEEECCCCCcccCCcchH-hHcC--CCHHHc-----------cCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEEC
Confidence 4689999999999999999997 5554 223333 3557889999999999999999999999999999
Q ss_pred CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEE
Q 014997 83 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 162 (414)
Q Consensus 83 ~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv 162 (414)
+|+++.||+||||||++|. .|+++|.+.++++++++++++..+......+++++|||||++|+|+|..|+++|.+|+++
T Consensus 96 ~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvV 174 (847)
T PRK14989 96 AGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI 174 (847)
T ss_pred CCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999987 456788777889999999999998888778899999999999999999999999999999
Q ss_pred eeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997 163 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 163 ~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
++.++++++.++++.+..+.+.++++||++++++.++++..++++....+.+++|+++++|+||+++|.+||+++++++|
T Consensus 175 e~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~G 254 (847)
T PRK14989 175 EFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCG 254 (847)
T ss_pred eccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcC
Confidence 99999998889999999999999999999999999999975433445578889999999999999999999999888999
Q ss_pred Cccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCce-eeeccC
Q 014997 243 LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF-YSRVFE 320 (414)
Q Consensus 243 l~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~-~~~~~~ 320 (414)
+..+ +|+|.||++|||+.|+|||+|||+.+....++ .+..|..||+.+|.||++.. ..|...... ..+.++
T Consensus 255 l~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a~vaa~~i~g~~-~~~~g~~~~~~lk~~G 327 (847)
T PRK14989 255 LAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMAQVAVDHLLGSE-NAFEGADLSAKLKLLG 327 (847)
T ss_pred ccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHHHHHHHHhcCCC-cCCCCcccceEEEECC
Confidence 9865 57899999999999999999999998665433 56779999999999999753 344432221 112333
Q ss_pred CCCCCcceeeeEeecCCCc------EEEEcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997 321 YEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 388 (414)
Q Consensus 321 ~~g~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (414)
+. +..+|...+. .........-|.++.++ +++|+|+++ +|+..+...+..++..+..++.
T Consensus 328 ~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~l-vGd~~~~~~l~~~~~~~~~l~~ 395 (847)
T PRK14989 328 VD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVL-VGDTSDYGNLLQLVLNAIELPE 395 (847)
T ss_pred cc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEEE-ECCHHHHHHHHHHHHcCCCCcc
Confidence 21 3344532211 22233333457788775 469999997 7888888888888877766554
No 6
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=3.5e-45 Score=359.39 Aligned_cols=336 Identities=23% Similarity=0.351 Sum_probs=268.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCC-CCHhHHHHcCCeEEcCCcEEEEeCCCCEEE
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGER-QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI 80 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~-~~~~~~~~~~i~~~~~~~V~~id~~~~~V~ 80 (414)
++++||||++|++.||+||.|++ ++.+ .....++ .. ...++++++|++++++++|+++|++++.|.
T Consensus 26 ~~~~Itvi~~~~~~~y~~~~l~~-~~~~-~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 92 (377)
T PRK04965 26 AHIPITLITADSGDEYNKPDLSH-VFSQ-GQRADDL-----------TRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVK 92 (377)
T ss_pred cCCCEEEEeCCCCCCcCcCcCcH-HHhC-CCCHHHh-----------hcCCHHHHHHhCCCEEECCCEEEEEECCCCEEE
Confidence 67899999999999999999987 4444 2333332 12 245677889999999999999999999888
Q ss_pred eCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEE
Q 014997 81 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 160 (414)
Q Consensus 81 ~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vt 160 (414)
+ ++..+.||+||||||+++. .|+++|.+. +++++++.++..+...+..+++++|||+|++|+|+|..|+++|.+|+
T Consensus 93 ~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vt 168 (377)
T PRK04965 93 S-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVT 168 (377)
T ss_pred E-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEE
Confidence 7 4667999999999999986 455566433 78888999988888777788999999999999999999999999999
Q ss_pred EEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997 161 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 161 lv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
++++.++++++.+++.....+.+.+++.||++++++.++++..+++ ...+.+.+|++++||.+|+|+|.+|+..++++
T Consensus 169 lv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~ 246 (377)
T PRK04965 169 LVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDS--GIRATLDSGRSIEVDAVIAAAGLRPNTALARR 246 (377)
T ss_pred EEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCC--EEEEEEcCCcEEECCEEEECcCCCcchHHHHH
Confidence 9999999988778899999999999999999999999999985422 23577889999999999999999999888889
Q ss_pred cCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceee-ecc
Q 014997 241 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYS-RVF 319 (414)
Q Consensus 241 ~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~-~~~ 319 (414)
+|+..++ +|.||++++|+.|||||+|||+..+... ...|..|..||+.+|+||++.. ..|...+..++ ..+
T Consensus 247 ~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~~a~n~~g~~-~~~~~~~~~~~~~~~ 318 (377)
T PRK04965 247 AGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMALAKNLLGQN-TPLKLPAMLVKVKTP 318 (377)
T ss_pred CCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHHHHHHhcCCC-cccccCCccEEEecC
Confidence 9998864 6999999999999999999999875432 2357779999999999999743 45655443322 344
Q ss_pred CCCCCCcceeeeEeecCCC---cEEEEcCCCCcEEEEEEeCCEEEEEEeecCChH
Q 014997 320 EYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPE 371 (414)
Q Consensus 320 ~~~g~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (414)
++ .+.++|...+ .+....+.+..|.++++++|+++|+++..+...
T Consensus 319 ~~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~ 366 (377)
T PRK04965 319 EL-------PLQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK 366 (377)
T ss_pred ce-------eeEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence 43 3667776543 122222333557788889999999998444343
No 7
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1.8e-41 Score=338.83 Aligned_cols=368 Identities=21% Similarity=0.302 Sum_probs=266.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++.+||||+++++++|.++.|+. ++.+......++. .....+++++.||+++++++|++||++++.|.+
T Consensus 25 ~~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~ 93 (438)
T PRK13512 25 KESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYDRKQITVKTYHEVIAINDERQTVTV 93 (438)
T ss_pred CCCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEE
Confidence 57899999999999999877775 4433111111110 122345557789999998999999999999988
Q ss_pred CCC---c--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHh
Q 014997 82 NSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG 154 (414)
Q Consensus 82 ~~g---~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~ 154 (414)
.++ + ++.||+||||||++|+. |.. +.+++++++++.++..+.+.+. .+++++|||||++|+|+|..|++
T Consensus 94 ~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~ 169 (438)
T PRK13512 94 LNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYE 169 (438)
T ss_pred EECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHh
Confidence 653 2 47999999999999864 332 2467888888888887776543 46899999999999999999999
Q ss_pred CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+|.+||++++.+++++ .+++++.+.+.+.++++||++++++++++++.. .+.+++|++++||.|++++|.+||
T Consensus 170 ~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~------~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 170 RGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRLNEEIDAINGN------EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred CCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCC------EEEECCCCEEEeCEEEECcCCCcC
Confidence 9999999999998886 589999999999999999999999999999632 567788889999999999999999
Q ss_pred ChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC-CCCC
Q 014997 235 VSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY-DYLP 312 (414)
Q Consensus 235 ~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~-~~~p 312 (414)
++++++.|+..+ +|+|.||+++||+.|||||+|||+.......+..........|..+|+.+|+||++....++ ...+
T Consensus 243 ~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~ 322 (438)
T PRK13512 243 SKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLG 322 (438)
T ss_pred hHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCccc
Confidence 999999998764 57799999999999999999999975433222222233455688999999999997432233 2222
Q ss_pred ceeeeccCCCCCCcceeeeEeecCCCc-------EEEE-----c----CCCCcEEEEEEe--CCEEEEEEeecCC-hHHh
Q 014997 313 YFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI-----G----NFDPKIATFWID--SGKLKGVLVESGS-PEEF 373 (414)
Q Consensus 313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~~-----~----~~~~~~~~~~~~--~~~~~g~~~~~~~-~~~~ 373 (414)
..+...++.. +..+|....+ .... . +...-+.+++++ +++|+|+++++.+ +.++
T Consensus 323 ~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~ 395 (438)
T PRK13512 323 NNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKR 395 (438)
T ss_pred ceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHH
Confidence 2222333321 3334433211 0000 0 001225666664 5899999986654 5555
Q ss_pred h-HHHHHHhCCCCCCh-hh--hcCCCcHH
Q 014997 374 Q-LLPTLARSQPFVDK-AK--LQQASSVE 398 (414)
Q Consensus 374 ~-~~~~l~~~~~~~~~-~~--~~~~~~~~ 398 (414)
. .+..+|+.+.+++. .. +..||+++
T Consensus 396 i~~~~~ai~~~~t~~~l~~~~~~~~P~~~ 424 (438)
T PRK13512 396 IDVLSMAMMNQLTVDELTEFEVAYAPPYS 424 (438)
T ss_pred HHHHHHHHHcCCcHHHHhhcccccCCCCC
Confidence 4 44556788888776 22 45666655
No 8
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=4.1e-41 Score=337.78 Aligned_cols=375 Identities=20% Similarity=0.279 Sum_probs=275.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++.+||||++++++.|.++.++. ++.+......++ ..+..+++++.|++++++++|+.||++++.|.+
T Consensus 24 ~~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~ 91 (444)
T PRK09564 24 KELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIKSGIDVKTEHEVVKVDAKNKTITV 91 (444)
T ss_pred CCCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHHCCCeEEecCEEEEEECCCCEEEE
Confidence 35689999999999998766664 333211111111 245678889999999988999999999998887
Q ss_pred CC---CcEEe--cCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--CCCeEEEECCChHHHHHHHHHHh
Q 014997 82 NS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG 154 (414)
Q Consensus 82 ~~---g~~~~--yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvVvGgG~~g~e~A~~l~~ 154 (414)
.+ |+.+. ||+||||||++|.. |.++|.+.+++++++++.++.++.+.+. .+++++|||+|++|+|+|..|++
T Consensus 92 ~~~~~~~~~~~~yd~lviAtG~~~~~-~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~ 170 (444)
T PRK09564 92 KNLKTGSIFNDTYDKLMIATGARPII-PPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKH 170 (444)
T ss_pred EECCCCCEEEecCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHh
Confidence 64 55666 99999999999864 5567776788998988888877766553 46899999999999999999999
Q ss_pred CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 155 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 155 ~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.|.+|+++++.+++++..+++++.+.+.+.+++.||+++++++++++.. ++.+..+.+++ .+++||.+++|+|.+|+
T Consensus 171 ~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~-~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 171 LGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDK-GEYEADVVIVATGVKPN 247 (444)
T ss_pred cCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCC-CEEEcCEEEECcCCCcC
Confidence 9999999999998887668999999999999999999999999999963 34444455544 47999999999999999
Q ss_pred ChhhhhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCC-CC
Q 014997 235 VSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDY-LP 312 (414)
Q Consensus 235 ~~~l~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~-~p 312 (414)
.++++++|++. ++|+|.||++++|+.|||||+|||+..+....+.......+..|.+||+.+|+||++.. ..++. .+
T Consensus 248 ~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~-~~~~~~~~ 326 (444)
T PRK09564 248 TEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH-VSFKGTLG 326 (444)
T ss_pred HHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC-CCCCCccc
Confidence 99999999876 35789999999999999999999998765544443344578889999999999999743 23321 11
Q ss_pred ceeeeccCCCCCCcceeeeEeecCCCc---------EEEEc---------CCCCcEEEEEEe--CCEEEEEEeecCC-hH
Q 014997 313 YFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKIATFWID--SGKLKGVLVESGS-PE 371 (414)
Q Consensus 313 ~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~~~~~~~--~~~~~g~~~~~~~-~~ 371 (414)
......+++ .+..+|....+ ..... +...-|.++.++ +++|+|+++++.. +.
T Consensus 327 ~~~~~~~~~-------~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~ 399 (444)
T PRK09564 327 SACIKVLDL-------EAARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAV 399 (444)
T ss_pred ceEEEECCE-------EEEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHH
Confidence 111112222 13444533211 01000 011235666663 6999999985543 53
Q ss_pred H-hhHHHHHHhCCCCCChhh--hcC-CCcHHHH
Q 014997 372 E-FQLLPTLARSQPFVDKAK--LQQ-ASSVEEA 400 (414)
Q Consensus 372 ~-~~~~~~l~~~~~~~~~~~--~~~-~~~~~~~ 400 (414)
+ +..+..+|+.+.+++.-. ... +|++.|+
T Consensus 400 ~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~ 432 (444)
T PRK09564 400 LRIDALAVAIYAKLTTQELGMMDFCYAPPFART 432 (444)
T ss_pred HHHHHHHHHHHCCCCHHHHhhcccccCCCCCCC
Confidence 4 445666789898887732 222 3556543
No 9
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=5.5e-40 Score=327.84 Aligned_cols=362 Identities=21% Similarity=0.327 Sum_probs=271.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCH-hHHHHcCCeEEcCCcEEEEeCCCCEEE
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQTLI 80 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~~~~i~~~~~~~V~~id~~~~~V~ 80 (414)
++.+||||++++++.|.+..++. +..+......++ ..... +++.+.|++++++++|+++|++++.|.
T Consensus 11 ~~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 11 KESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CCCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 46789999999998887545664 444321111111 12333 455889999998899999999999887
Q ss_pred eCC---CcEEe--cCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh--cCCCeEEEECCChHHHHHHHHHH
Q 014997 81 TNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAV 153 (414)
Q Consensus 81 ~~~---g~~~~--yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~ 153 (414)
+.+ ++++. ||+||||||++|+. |.++|.+.+++++.+++.++..++..+ ..+++|+|||+|++|+|+|..|+
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~~p~~-~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~ 157 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGASPIV-PNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALR 157 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCCCCCC-CCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHH
Confidence 753 45677 99999999999864 556776667888899998888877766 45789999999999999999999
Q ss_pred hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
++|.+|+++++.+.++...+++++...+.+.+++.||++++++.++++..+ +.+ +.+.+|++++||.+|+++|.+|
T Consensus 158 ~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~--v~~~~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 158 ERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV--KVFTSGGVYQADMVILATGIKP 233 (427)
T ss_pred hCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE--EEEcCCCEEEeCEEEECCCccC
Confidence 999999999999888655688899999999999999999999999999743 332 4667888999999999999999
Q ss_pred CChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCC-
Q 014997 234 TVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL- 311 (414)
Q Consensus 234 ~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~- 311 (414)
+.++++++++..+ +|+|.||++++|+.|+|||+|||+..+....+.......+..|.+||+.+|+||++. ...+...
T Consensus 234 ~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~-~~~~~~~~ 312 (427)
T TIGR03385 234 NSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN-DIEFKGVL 312 (427)
T ss_pred CHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC-CCCCCCcc
Confidence 9999999998875 578999999999999999999999876654444333457788999999999999974 3445432
Q ss_pred CceeeeccCCCCCCcceeeeEeecCCCc---------EEEEcCC---------CCcEEEEEEe--CCEEEEEEeecCC-h
Q 014997 312 PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIGNF---------DPKIATFWID--SGKLKGVLVESGS-P 370 (414)
Q Consensus 312 p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~~~~~~---------~~~~~~~~~~--~~~~~g~~~~~~~-~ 370 (414)
+..++..+++. +..+|....+ ....... ..-+.++.++ +++|+|+++++.. +
T Consensus 313 ~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a 385 (427)
T TIGR03385 313 GTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGA 385 (427)
T ss_pred eeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccH
Confidence 23333444432 5566653321 1111000 1125677764 5999999986666 6
Q ss_pred HHhh-HHHHHHhCCCCCCh
Q 014997 371 EEFQ-LLPTLARSQPFVDK 388 (414)
Q Consensus 371 ~~~~-~~~~l~~~~~~~~~ 388 (414)
.++. .+..+|+.+.+++.
T Consensus 386 ~e~i~~~~~ai~~~~t~~~ 404 (427)
T TIGR03385 386 DKRIDVLAAAIMAGLTVKD 404 (427)
T ss_pred HHHHHHHHHHHHCCCCHHH
Confidence 5654 44556788887776
No 10
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=100.00 E-value=4e-42 Score=318.56 Aligned_cols=378 Identities=23% Similarity=0.369 Sum_probs=294.5
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCC-CCCCCCccccCCC--CCCCCHhHH---------HHcCCeEEcCCcE
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP-ARLPGFHTCVGSG--GERQTPEWY---------KEKGIEMIYQDPV 69 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~-~~l~~~~~~~g~~--~~~~~~~~~---------~~~~i~~~~~~~V 69 (414)
++.++.||+.|+.+||.||||||+++...+... ..| -|-.-+|.+ +++.+..+| ..-||-+..|.+|
T Consensus 202 a~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~l-rfkqwsGkeRsiffepd~FfvspeDLp~~~nGGvAvl~G~kv 280 (659)
T KOG1346|consen 202 ATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKL-RFKQWSGKERSIFFEPDGFFVSPEDLPKAVNGGVAVLRGRKV 280 (659)
T ss_pred CCceEEeeccCccCcccCCCcchhceecCCCChhhhe-eecccCCccceeEecCCcceeChhHCcccccCceEEEeccce
Confidence 678999999999999999999999776433322 121 222334443 334444333 2237999999999
Q ss_pred EEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCC---CCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHH
Q 014997 70 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGM 146 (414)
Q Consensus 70 ~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~---~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~ 146 (414)
..||.+.+.|+++||.+|.||+++||||.+|+.++.+... -...+.+++...|++++...+...++|.|||+|++|.
T Consensus 281 vkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgS 360 (659)
T KOG1346|consen 281 VKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGS 360 (659)
T ss_pred EEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhh
Confidence 9999999999999999999999999999999887754322 1356788899999999988887889999999999999
Q ss_pred HHHHHHHhC----CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEec
Q 014997 147 EVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDA 222 (414)
Q Consensus 147 e~A~~l~~~----g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~ 222 (414)
|+|+.|.+. |.+|+-+......+..++++-++++..+.+++.||.++.+..|.++..... . ..+.++||.++..
T Consensus 361 ELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~-n-l~lkL~dG~~l~t 438 (659)
T KOG1346|consen 361 ELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCK-N-LVLKLSDGSELRT 438 (659)
T ss_pred hHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhcc-c-eEEEecCCCeeee
Confidence 999999763 678888777888888889999999999999999999999999998875433 2 2578999999999
Q ss_pred CEEEEccCCcCCChhhhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997 223 DTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300 (414)
Q Consensus 223 D~vi~a~G~~p~~~~l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i 300 (414)
|+|++|+|-.||+++++..||+.+ -|++.||..++.. .|||++||++.+.+...|. .|++||.+|...|+.|+.||
T Consensus 439 D~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENM 516 (659)
T KOG1346|consen 439 DLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENM 516 (659)
T ss_pred eeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhcccccc-eeccccccceeeceeccccc
Confidence 999999999999999999999875 4899999999874 8999999999999888776 46899999999999999999
Q ss_pred hcCCCCCCCCCCceeeeccCCCCC---------CcceeeeEeecCC------------C----c----------------
Q 014997 301 LSAQTHTYDYLPYFYSRVFEYEGS---------PRKVWWQFFGDNV------------G----E---------------- 339 (414)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~~~g~---------~~~~~~~~~G~~~------------~----~---------------- 339 (414)
.+ ...+|....+||++.-..-|. .-.+.+ +-.+. + +
T Consensus 517 tg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgV--fA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s 593 (659)
T KOG1346|consen 517 TG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGV--FALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGAS 593 (659)
T ss_pred cc-ccCCccccceeeeccCcccccceeeecccCCCccee--eeccccccchhhhhhccCCCCccccccccccccccCCcC
Confidence 96 556888888999874321110 000000 00000 0 0
Q ss_pred --EE----EEcCCCCcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCCh
Q 014997 340 --TI----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDK 388 (414)
Q Consensus 340 --~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (414)
-+ ..++-.+|-+.||++|++|||+++ .|--..+...|++|..+...++
T Consensus 594 ~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~dd 647 (659)
T KOG1346|consen 594 QDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYDD 647 (659)
T ss_pred CCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchhh
Confidence 00 000001356789999999999997 7877788999999988777665
No 11
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.4e-37 Score=304.40 Aligned_cols=320 Identities=26% Similarity=0.416 Sum_probs=243.6
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCC--CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 131 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~--g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 131 (414)
.++++++|+++.| +..-++ .++|.+.+ .+++++|++|||||++|..+| .++. ++...+. .........
T Consensus 102 ~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~~--~~~~~~~----s~~~l~~~~ 171 (454)
T COG1249 102 GLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPGI--DGARILD----SSDALFLLE 171 (454)
T ss_pred HHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCCC--CCCeEEe----chhhccccc
Confidence 3455679999987 454444 56777765 478999999999999997544 3443 3332222 222122225
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
-+++++|||||++|+|+|..++++|.+||++++.+++++ .+|+++++.+.+.|++.|+++++++.+++++..+++ ..
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp-~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~ 248 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP-GEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDG--VL 248 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC-cCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCe--EE
Confidence 689999999999999999999999999999999999998 589999999999999999999999999999866444 46
Q ss_pred EEeCCCc--EEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997 212 VKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 286 (414)
Q Consensus 212 v~~~~g~--~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~ 286 (414)
+.+++|+ ++++|.+++|+|++||++ -|++.|++.+ +|+|.||+.++|++|||||+|||+..+. ..
T Consensus 249 v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~----------La 318 (454)
T COG1249 249 VTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPM----------LA 318 (454)
T ss_pred EEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCCEEEeeccCCCcc----------cH
Confidence 7777776 799999999999999998 3799999986 4899999888889999999999987654 23
Q ss_pred HHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCcE------EEEc--CC----------
Q 014997 287 DHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIG--NF---------- 346 (414)
Q Consensus 287 ~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~--~~---------- 346 (414)
..|..+|++|+.|+++... ..+..+|+ .+|..+- +..+|..+.+. +..+ .+
T Consensus 319 h~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~ 389 (454)
T COG1249 319 HVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMG 389 (454)
T ss_pred hHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHHHhcCCceEEEEeecccchhHHhcc
Confidence 3599999999999996222 24667887 4555542 44556543211 1111 01
Q ss_pred -CCcEEEEEEe--CCEEEEEEeecCChHHhhHHHHH-HhCCCCCChhh--hcCCCcHHHHHHHHh
Q 014997 347 -DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDKAK--LQQASSVEEALEIAR 405 (414)
Q Consensus 347 -~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~l-~~~~~~~~~~~--~~~~~~~~~~~~~~~ 405 (414)
..-|.++.++ +++|+|++++..++.++...-.+ ++.+.+++... ...||+++|++.+|+
T Consensus 390 ~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 390 ETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence 1236677775 48999999988889888776664 57777666633 789999999999874
No 12
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=6e-38 Score=301.25 Aligned_cols=283 Identities=23% Similarity=0.349 Sum_probs=225.2
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcC-CeEEcCCcEEEEeCCCCEEEe
Q 014997 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKG-IEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-i~~~~~~~V~~id~~~~~V~~ 81 (414)
+-+||+|++.++++|. |.|.. ...|.-.. .++ .....+.+++.+ ++++++ +|++||+++++|++
T Consensus 28 ~~~itLVd~~~~hl~~-plL~e-va~g~l~~-~~i-----------~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~~ 92 (405)
T COG1252 28 DVEITLVDRRDYHLFT-PLLYE-VATGTLSE-SEI-----------AIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVTL 92 (405)
T ss_pred CCcEEEEeCCCccccc-hhhhh-hhcCCCCh-hhe-----------eccHHHHhcccCceEEEEE-EEEEEcccCCEEEe
Confidence 4689999999998886 77765 66663222 222 234556666455 999985 99999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc--------CC-----CeEEEECCChHHHHH
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--------KA-----KKVVVVGGGYIGMEV 148 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~--------~~-----~~vvVvGgG~~g~e~ 148 (414)
+++..+.||+||||+|+.+.. +.++|. .+..+.+++++++.+++..+. .. -+++|+|||++|+|+
T Consensus 93 ~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVEl 170 (405)
T COG1252 93 ADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVEL 170 (405)
T ss_pred CCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHH
Confidence 998889999999999999864 444553 234567889999987766542 11 269999999999999
Q ss_pred HHHHHhCC-------------CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997 149 AAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215 (414)
Q Consensus 149 A~~l~~~g-------------~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~ 215 (414)
|..|+.+- .+|+++++.+++|+ .++++++...++.|+++||++++++.|++++++ .|.++
T Consensus 171 AgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~------~v~~~ 243 (405)
T COG1252 171 AGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPD------GVTLK 243 (405)
T ss_pred HHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHCCCEEEcCCceEEECCC------cEEEc
Confidence 99986531 38999999999998 699999999999999999999999999999865 68888
Q ss_pred CCc-EEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcCCCCC-CCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997 216 DGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 291 (414)
Q Consensus 216 ~g~-~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~ 291 (414)
+|. +|+||++||++|.+++ +++++ .+++.+ .|++.||+++++ ++|+|||+|||+.+... . ......+.|.+
T Consensus 244 ~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~---~-p~P~tAQ~A~Q 318 (405)
T COG1252 244 DGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP---R-PVPPTAQAAHQ 318 (405)
T ss_pred cCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC---C-CCCChhHHHHH
Confidence 887 4999999999999998 78888 577766 589999999997 99999999999998764 1 11235677999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCcee
Q 014997 292 SAQHCIKALLSAQTHTYDYLPYFY 315 (414)
Q Consensus 292 ~a~~aa~~i~~~~~~~~~~~p~~~ 315 (414)
||..+|+||..... ..+..||.+
T Consensus 319 qg~~~a~ni~~~l~-g~~l~~f~y 341 (405)
T COG1252 319 QGEYAAKNIKARLK-GKPLKPFKY 341 (405)
T ss_pred HHHHHHHHHHHHhc-CCCCCCCcc
Confidence 99999999985332 234445543
No 13
>PLN02507 glutathione reductase
Probab=100.00 E-value=2e-36 Score=306.10 Aligned_cols=320 Identities=20% Similarity=0.287 Sum_probs=241.1
Q ss_pred HHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
+...+|+++.+ ++..+|+...+|++.+|+ .+.||+||||||++|.. |.++|.+ ...+.+++..+. ..+
T Consensus 134 l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~-p~ipG~~-----~~~~~~~~~~l~---~~~ 203 (499)
T PLN02507 134 LANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQR-PNIPGKE-----LAITSDEALSLE---ELP 203 (499)
T ss_pred HHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCC-CCCCCcc-----ceechHHhhhhh---hcC
Confidence 44579999986 888899988888888886 58999999999999864 4444422 112334443332 346
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.|++.||++++++.|++++..+++ ..+.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~ 280 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR-GFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVI 280 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc-ccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEE
Confidence 8999999999999999999999999999999998887 489999999999999999999999999999754333 2567
Q ss_pred eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
+.+|+++++|.|++++|++||+++ +++++++.+ +|+|.||+++||+.|||||+|||+.... ....|.
T Consensus 281 ~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~Ts~p~IyAiGDv~~~~~----------l~~~A~ 350 (499)
T PLN02507 281 TDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRIN----------LTPVAL 350 (499)
T ss_pred ECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcCCCCCEEEeeEcCCCCc----------cHHHHH
Confidence 788889999999999999999986 578888775 5779999999999999999999986432 455799
Q ss_pred HHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCC--------cE-EE-----------EcCCCC
Q 014997 291 QSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ET-IE-----------IGNFDP 348 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~-~~-----------~~~~~~ 348 (414)
.||+.+++||+++... .+..+|+ ..|+++- +..+|..+. .. +. .+....
T Consensus 351 ~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~vGlte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (499)
T PLN02507 351 MEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEK 421 (499)
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEEeCCHHHHHhccCCCEEEEEeecCccccccccCCCC
Confidence 9999999999874332 2334453 4555431 333443211 00 00 011112
Q ss_pred cEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcC
Q 014997 349 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAA 407 (414)
Q Consensus 349 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 407 (414)
-+.++.++ +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|.+..++..
T Consensus 422 g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~ 485 (499)
T PLN02507 422 TVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSV 485 (499)
T ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhh
Confidence 26667664 58999999877777666544 4567899888873 3 68999999999987633
No 14
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=100.00 E-value=4.8e-37 Score=305.66 Aligned_cols=283 Identities=20% Similarity=0.258 Sum_probs=221.3
Q ss_pred CCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe-
Q 014997 3 DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT- 81 (414)
Q Consensus 3 ~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~- 81 (414)
+.+||||+++++++| +|.|+. ++.+.. ...++ .......+...+++++. .+|+.||++++.|.+
T Consensus 33 ~~~ItlI~~~~~~~~-~~~l~~-~~~g~~-~~~~~-----------~~~~~~~~~~~~~~~i~-~~V~~Id~~~~~v~~~ 97 (424)
T PTZ00318 33 KYNITVISPRNHMLF-TPLLPQ-TTTGTL-EFRSI-----------CEPVRPALAKLPNRYLR-AVVYDVDFEEKRVKCG 97 (424)
T ss_pred CCeEEEEcCCCCcch-hhhHHH-hcccCC-ChHHh-----------HHHHHHHhccCCeEEEE-EEEEEEEcCCCEEEEe
Confidence 468999999999877 487775 655522 22222 11234456667899987 599999999999988
Q ss_pred ---------CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc-----------------CCCe
Q 014997 82 ---------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-----------------KAKK 135 (414)
Q Consensus 82 ---------~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~-----------------~~~~ 135 (414)
++|.+++||+||||||+.+.. +.+||.. +.++.++++.++..+++.+. ..++
T Consensus 98 ~~~~~~~~~~~g~~i~yD~LViAtGs~~~~-~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (424)
T PTZ00318 98 VVSKSNNANVNTFSVPYDKLVVAHGARPNT-FNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLH 175 (424)
T ss_pred cccccccccCCceEecCCEEEECCCcccCC-CCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCE
Confidence 567789999999999999864 4456643 34567788888776654331 1248
Q ss_pred EEEECCChHHHHHHHHHHh--------------CCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 136 VVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~--------------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
++|||||++|+|+|..|+. .+.+|+++++.+++++ .+++.+++.+++.|+++||++++++.|+++
T Consensus 176 vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v 254 (424)
T PTZ00318 176 FVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SFDQALRKYGQRRLRRLGVDIRTKTAVKEV 254 (424)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeEEEE
Confidence 9999999999999999875 3689999999999997 589999999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCC-CCCCcEEEEccccccCCccCCc
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDR 279 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~-t~~~~IyA~GD~a~~~~~~~~~ 279 (414)
..+ .+.+++|+++++|.+|+++|.+|+ +++++++++.+ +|+|.||+++| +++|||||+|||+..+....
T Consensus 255 ~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~-- 325 (424)
T PTZ00318 255 LDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPL-- 325 (424)
T ss_pred eCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCC--
Confidence 743 577889999999999999999998 68888888764 68999999999 59999999999998754221
Q ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCcee
Q 014997 280 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 315 (414)
Q Consensus 280 ~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~ 315 (414)
...+..|.+||..+|+||.+.........||.+
T Consensus 326 ---~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 326 ---PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 125678999999999999864322223456654
No 15
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=2.8e-35 Score=296.72 Aligned_cols=326 Identities=18% Similarity=0.310 Sum_probs=243.9
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 131 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 131 (414)
+++++.+|+++.+ ++..++....+|.+.+|+ ++.||+||||||++|..+ +.++...+++++ +..+.....
T Consensus 102 ~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p-~~~~~~~~~v~~------~~~~~~~~~ 173 (461)
T PRK05249 102 GQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRP-PDVDFDHPRIYD------SDSILSLDH 173 (461)
T ss_pred HHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC-CCCCCCCCeEEc------HHHhhchhh
Confidence 4466789999986 677777766667776764 799999999999998754 334433344433 223333334
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+++++..+++ ..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~ 250 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS-FLDDEISDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VI 250 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC-cCCHHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EE
Confidence 579999999999999999999999999999999999997 589999999999999999999999999999854332 24
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~ 288 (414)
+.+.+|+++++|.|++|+|.+||+++ ++++++..+ +|+|.||+++||+.|+|||+|||+..+. ....
T Consensus 251 v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~IyAiGD~~~~~~----------~~~~ 320 (461)
T PRK05249 251 VHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPS----------LASA 320 (461)
T ss_pred EEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHhH
Confidence 56778889999999999999999885 577788764 5779999999999999999999986432 3556
Q ss_pred HHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC--------------------cEEEEcCCC
Q 014997 289 ARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------------------ETIEIGNFD 347 (414)
Q Consensus 289 A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------------------~~~~~~~~~ 347 (414)
|..+|+.+|.||++... ..+..+|.. +|..+- +..+|.... .....+. .
T Consensus 321 A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~ 390 (461)
T PRK05249 321 SMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGD-N 390 (461)
T ss_pred HHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHcCCCeEEEEEccccccceeecCC-C
Confidence 99999999999996432 233445553 444321 333443321 0011111 1
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCc
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
.-+.++.++ +++|+|+++++.++.++... .-+|+.+.+++.- . ...||+++|++..|++.+.+
T Consensus 391 ~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 458 (461)
T PRK05249 391 VGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLN 458 (461)
T ss_pred CcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhc
Confidence 236666664 58999999877777776654 4467888888873 3 67899999999999876544
No 16
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=1.9e-35 Score=297.85 Aligned_cols=325 Identities=21% Similarity=0.284 Sum_probs=237.6
Q ss_pred hHHHHc-CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997 54 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 54 ~~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
.++++. ||+++.++.+ ..+.++|.+ +++++.||+||||||++|+. |.++|.+..++++..+ +......
T Consensus 102 ~~~~~~~gv~v~~g~~~---~~~~~~v~v-~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~~~~~~------~~~~~~~ 170 (463)
T PRK06370 102 QWLRGLEGVDVFRGHAR---FESPNTVRV-GGETLRAKRIFINTGARAAI-PPIPGLDEVGYLTNET------IFSLDEL 170 (463)
T ss_pred HHHhcCCCcEEEEEEEE---EccCCEEEE-CcEEEEeCEEEEcCCCCCCC-CCCCCCCcCceEcchH------hhCcccc
Confidence 455666 9999987543 245677777 45679999999999999874 5566655444443322 2222235
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.|.+++..+++....+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~ 249 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGL 249 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEE
Confidence 799999999999999999999999999999999999874 7889999999999999999999999999986533332223
Q ss_pred EeC-CCcEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997 213 KLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288 (414)
Q Consensus 213 ~~~-~g~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~ 288 (414)
... ++.++++|.||+|+|.+|+++ + +++.|+..+ +|+|.||+++||+.|+|||+|||+..+. ....
T Consensus 250 ~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~IyAiGD~~~~~~----------~~~~ 319 (463)
T PRK06370 250 DCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGA----------FTHT 319 (463)
T ss_pred EeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEEEeeecCCCcc----------cHHH
Confidence 333 345799999999999999988 4 677888765 5779999999999999999999987532 3456
Q ss_pred HHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EEE--c--------CCC
Q 014997 289 ARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEI--G--------NFD 347 (414)
Q Consensus 289 A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~~--~--------~~~ 347 (414)
|..||+.+|+||++.....+ ..+|+. .|..+ .+..+|....+ . ... . +..
T Consensus 320 A~~~g~~aa~ni~~~~~~~~~~~~~p~~---~~~~p------~ia~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (463)
T PRK06370 320 AYNDARIVAANLLDGGRRKVSDRIVPYA---TYTDP------PLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGET 390 (463)
T ss_pred HHHHHHHHHHHHhCCCCCCcccccCCeE---EEcCC------CcEeeeCCHHHHHHcCCCeEEEEEecCcchhHHhcCCC
Confidence 89999999999997433333 334542 23221 13445543210 0 000 0 011
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHhcCCC
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALP 409 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 409 (414)
.-+.++.++ +++|+|+++++..+.++... ..+|+.+.++++-. +..||+++|++.+|++.+.
T Consensus 391 ~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~ 457 (463)
T PRK06370 391 QGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALR 457 (463)
T ss_pred CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhh
Confidence 236677765 69999999877777766554 45679999988833 6799999999999998764
No 17
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=3.7e-35 Score=293.86 Aligned_cols=319 Identities=20% Similarity=0.273 Sum_probs=235.7
Q ss_pred HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCe
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 135 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 135 (414)
+++.||+++.| ++.-+ +.++|++.+|+++.||+||||||++|+ .|++++.+...+ .+.++...+. ..+++
T Consensus 99 ~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~~~---~~~~~~~~l~---~~~~~ 168 (451)
T PRK07846 99 RDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGVRY---HTSDTIMRLP---ELPES 168 (451)
T ss_pred hhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCccE---EchHHHhhhh---hcCCe
Confidence 56789999987 44444 578899988888999999999999986 455555332222 2334443332 34789
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~ 215 (414)
++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+ +.||++++++++++++.++ +. ..+.+.
T Consensus 169 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~ 244 (451)
T PRK07846 169 LVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDVRLGRNVVGVSQDG-SG-VTLRLD 244 (451)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcC-CE-EEEEEC
Confidence 99999999999999999999999999999999886 58889888877654 5689999999999997543 22 246777
Q ss_pred CCcEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHH
Q 014997 216 DGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 292 (414)
Q Consensus 216 ~g~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~ 292 (414)
+|++++||.|++++|.+|+++++ ++.+++.+ +|+|.||+++||+.|||||+|||+..+. ....|..|
T Consensus 245 ~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD~~~~~~----------l~~~A~~~ 314 (451)
T PRK07846 245 DGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQ----------LKHVANHE 314 (451)
T ss_pred CCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEeecCCCcc----------ChhHHHHH
Confidence 88899999999999999999884 67788874 5779999999999999999999997532 33458999
Q ss_pred HHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-------------EcCCCCc
Q 014997 293 AQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-------------IGNFDPK 349 (414)
Q Consensus 293 a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-------------~~~~~~~ 349 (414)
|+.+++||++... ..+..+|+. .|..+ .+..+|....+ ... .++ ..-
T Consensus 315 g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g 384 (451)
T PRK07846 315 ARVVQHNLLHPDDLIASDHRFVPAA---VFTHP------QIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMED-TTG 384 (451)
T ss_pred HHHHHHHHcCCCCccccCCCCCCeE---EECCC------CcEeEeCCHHHHHhcCCCEEEEEEecCcchhhhhCCC-Cce
Confidence 9999999996422 234556654 33321 13344433211 000 011 122
Q ss_pred EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h--hcCCCcHHHHHHHHhcCC
Q 014997 350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K--LQQASSVEEALEIARAAL 408 (414)
Q Consensus 350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 408 (414)
+.++.++ +++|+|+++++.++.++... ..+|+.+.+++.- . ...||+++|++.+|++.+
T Consensus 385 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 449 (451)
T PRK07846 385 FVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL 449 (451)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence 5666664 59999999877777666544 4567899888873 3 358999999999998654
No 18
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=295.08 Aligned_cols=325 Identities=22% Similarity=0.315 Sum_probs=239.5
Q ss_pred hHHHHcCCeEEcCCcEEEEe----CCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997 54 EWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 127 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id----~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~ 127 (414)
+++++++|+++.+ +++.++ +....|.+.+|+ ++.||+||||||++|..+|. ++.+.+.+++..++.+.
T Consensus 100 ~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~-~~~~~~~v~~~~~~~~~---- 173 (466)
T PRK07845 100 ARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT-AEPDGERILTWRQLYDL---- 173 (466)
T ss_pred HHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC-CCCCCceEEeehhhhcc----
Confidence 5567789999986 676633 333455566775 79999999999999864432 22223445554433322
Q ss_pred HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997 128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 207 (414)
Q Consensus 128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 207 (414)
...+++++|||+|.+|+|+|..|+++|.+||++++.+++++. +++++...+.+.|+++||++++++.+.+++..+++
T Consensus 174 --~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~ 250 (466)
T PRK07845 174 --DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVFARRGMTVLKRSRAESVERTGDG 250 (466)
T ss_pred --cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCE
Confidence 124689999999999999999999999999999999999985 78899999999999999999999999999754333
Q ss_pred cEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccc
Q 014997 208 RVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 284 (414)
Q Consensus 208 ~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~ 284 (414)
+ .+.+.+|+++++|.|++++|.+||++. +++++++.+ +|+|.||+++||+.|||||+|||+..+.
T Consensus 251 -~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~---------- 318 (466)
T PRK07845 251 -V-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLP---------- 318 (466)
T ss_pred -E-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCCCEEEEeeccCCcc----------
Confidence 2 466778889999999999999999885 578888865 5779999999999999999999997432
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCC--CCCCCceeeeccCCCCCCcceeeeEeecCCC-------c--EE-----------E
Q 014997 285 HVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TI-----------E 342 (414)
Q Consensus 285 ~~~~A~~~a~~aa~~i~~~~~~~--~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~-----------~ 342 (414)
.+..|..||..++.|+++....+ +..+|+ ..|+.+- +..+|.... + .. .
T Consensus 319 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~ 389 (466)
T PRK07845 319 LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAAIDSGEVPARTVMLPLATNPRAKM 389 (466)
T ss_pred chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHHHHhCCCceEEEEEecccCchhhh
Confidence 46679999999999999743222 333443 3443210 233333211 0 00 0
Q ss_pred EcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997 343 IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 343 ~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 409 (414)
.+. ..-|.++.++ +++|+|+++++.++.++... ..+|+.+.+++. .. +..||++.|.+..+++.+.
T Consensus 390 ~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 460 (466)
T PRK07845 390 SGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLM 460 (466)
T ss_pred cCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhh
Confidence 111 1236666664 68999999877777666544 446788888887 23 6789999999999988654
No 19
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=3.1e-35 Score=294.72 Aligned_cols=318 Identities=19% Similarity=0.288 Sum_probs=235.4
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
..+++.||+++.+ ++..++++...+. .+|+.+.||+||||||++|.. |.++|.+ ...+..+...+ ...+
T Consensus 98 ~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~~-p~i~G~~-----~~~~~~~~~~l---~~~~ 166 (446)
T TIGR01424 98 RLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQK-PNLPGHE-----LGITSNEAFHL---PTLP 166 (446)
T ss_pred HHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCCC-CCCCCcc-----ceechHHhhcc---cccC
Confidence 4466789999986 8888887644443 467789999999999999864 4444432 11122222222 2347
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.+++.||++++++.+++++..+++ ..+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~ 243 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVT 243 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEE
Confidence 89999999999999999999999999999999988874 78999999999999999999999999999754333 3566
Q ss_pred eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
+.+|+++++|.+|+|+|.+|+++. +++.+++.+ +|+|.||+++||+.|||||+|||+.... ....|.
T Consensus 244 ~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~ 313 (446)
T TIGR01424 244 LSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDVTDRIN----------LTPVAI 313 (446)
T ss_pred EcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeeccCCCcc----------chhHHH
Confidence 778889999999999999999875 577888764 5779999999999999999999986422 445699
Q ss_pred HHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC--------cEE-EE-----------cCCCC
Q 014997 291 QSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETI-EI-----------GNFDP 348 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~--------~~~-~~-----------~~~~~ 348 (414)
.||+.++.||++....++ ..+|+ ..|+.+. +..+|.... ... .. .+...
T Consensus 314 ~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (446)
T TIGR01424 314 MEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGDILVYRAGFRPMKNTFSGRQEK 384 (446)
T ss_pred HHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCCEEEEEEecCchHhHhhcCCCc
Confidence 999999999997443333 34554 3444321 333443221 000 00 01112
Q ss_pred cEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHH
Q 014997 349 KIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIA 404 (414)
Q Consensus 349 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~ 404 (414)
-+.++.++ +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++..+
T Consensus 385 g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 385 TLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred eEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 36677664 69999999877777776554 4567999988883 3 67999999998765
No 20
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.9e-35 Score=295.70 Aligned_cols=325 Identities=25% Similarity=0.344 Sum_probs=239.0
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCC-CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~-g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
.+++.||+++.+ +++.+|+...+|...+ ++++.||+||||||++|..+ +|....+.. +.+..+...+ ...+
T Consensus 101 ~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~~~~-v~~~~~~~~~---~~~~ 172 (462)
T PRK06416 101 LLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEIDGRV-IWTSDEALNL---DEVP 172 (462)
T ss_pred HHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCCCCe-EEcchHhhCc---cccC
Confidence 456789999986 6777777665665433 46799999999999998643 343334432 2233333322 2346
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.++++||++++++.|++++.+++ .+ .+.
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~-~v-~v~ 249 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKIKTGAKAKKVEQTDD-GV-TVT 249 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCC-EE-EEE
Confidence 89999999999999999999999999999999999874 8899999999999999999999999999986433 22 455
Q ss_pred eCCC---cEEecCEEEEccCCcCCChhh--hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997 214 LEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288 (414)
Q Consensus 214 ~~~g---~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~ 288 (414)
+.+| ++++||.+|+++|.+|+..++ ++.++..++|+|.||+++||+.|+|||+|||+..+. .+..
T Consensus 250 ~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAiGD~~~~~~----------~~~~ 319 (462)
T PRK06416 250 LEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAIGDIVGGPM----------LAHK 319 (462)
T ss_pred EEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEeeecCCCcc----------hHHH
Confidence 5555 679999999999999998874 678887776789999999999999999999986432 4667
Q ss_pred HHHHHHHHHHHHhcCCCCCCC--CCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-EEcC-----------CC
Q 014997 289 ARQSAQHCIKALLSAQTHTYD--YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-EIGN-----------FD 347 (414)
Q Consensus 289 A~~~a~~aa~~i~~~~~~~~~--~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~~~~-----------~~ 347 (414)
|..||+.+|.||++. ..+++ .+|++ ..++.. +..+|....+ .. ..-. ..
T Consensus 320 A~~~g~~aa~ni~~~-~~~~~~~~~~~~--~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 389 (462)
T PRK06416 320 ASAEGIIAAEAIAGN-PHPIDYRGIPAV--TYTHPE-------VASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGET 389 (462)
T ss_pred HHHHHHHHHHHHcCC-CCCCCCCCCCeE--EECCCc-------eEEEeCCHHHHHhcCCCeEEEEEecCcChHhHhcCCC
Confidence 999999999999963 33333 34433 333322 4445544221 00 0000 01
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
.-+.++.++ +++|+|+++++.++.++... ..+|+.+.+++. .. ...||++.|++..|++.+..
T Consensus 390 ~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 457 (462)
T PRK06416 390 DGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAG 457 (462)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhcc
Confidence 225666663 69999999877777776544 456789988887 33 57899999999999877654
No 21
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=5e-35 Score=293.85 Aligned_cols=317 Identities=22% Similarity=0.322 Sum_probs=236.3
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 134 (414)
.+.+.||+++.+ +++.+++ ++|++ +|+++.||+||||||++|.. |.++|. ....+..+ +......++
T Consensus 102 ~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~~-p~i~g~-----~~~~~~~~---~~~~~~~~~ 168 (450)
T PRK06116 102 GLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPSI-PDIPGA-----EYGITSDG---FFALEELPK 168 (450)
T ss_pred HHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCCC-CCCCCc-----ceeEchhH---hhCccccCC
Confidence 355689999987 6776764 67777 67789999999999999864 444442 22222222 222223578
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||+++++++|++++.++++.+ .+.+
T Consensus 169 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~ 246 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTL 246 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEE
Confidence 999999999999999999999999999999998886 58999999999999999999999999999986544433 4677
Q ss_pred CCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997 215 EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 291 (414)
Q Consensus 215 ~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~ 291 (414)
.+|++++||.|++++|.+|+++. ++++++..+ +|+|.||+++||++|||||+|||+..+. .+..|..
T Consensus 247 ~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~ 316 (450)
T PRK06116 247 EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVE----------LTPVAIA 316 (450)
T ss_pred cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEeecCCCcC----------cHHHHHH
Confidence 88889999999999999999885 577888765 5779999999999999999999986422 4567999
Q ss_pred HHHHHHHHHhcCCC-C--CCCCCCceeeeccCCCCCCcceeeeEeecCCC-------c--EE-EEc-----------CCC
Q 014997 292 SAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TI-EIG-----------NFD 347 (414)
Q Consensus 292 ~a~~aa~~i~~~~~-~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~--~~-~~~-----------~~~ 347 (414)
||+.+|+||++... . .+..+|+ ..|+.+- +..+|.... + .. ... +..
T Consensus 317 ~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (450)
T PRK06116 317 AGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQ 387 (450)
T ss_pred HHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCCCCcEEEEEEecchhHHHHhcCCC
Confidence 99999999997433 2 3445564 3455421 334443221 1 10 010 011
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR 405 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 405 (414)
.-+.+++++ +++|+|+++++..+.++... ..+|+.+.+++. .+ +..||+++|++..++
T Consensus 388 ~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 450 (450)
T PRK06116 388 PCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTMR 450 (450)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhcC
Confidence 236677664 58999999877777666554 456789998888 33 679999999998763
No 22
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=8.4e-35 Score=293.04 Aligned_cols=326 Identities=17% Similarity=0.255 Sum_probs=235.1
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
.+++.||+++.+ ++..+++....|...+| .++.||+||||||++|+.+|.+++ +.+++.+ ..+...+ ...
T Consensus 102 ~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~~v~~---~~~~~~~---~~~ 173 (471)
T PRK06467 102 MAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDPRIWD---STDALEL---KEV 173 (471)
T ss_pred HHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCCcEEC---hHHhhcc---ccC
Confidence 345679999987 56656554334555566 479999999999999875554333 2334432 2233222 235
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.++++ |++++++.+++++..+++ + .+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~-~-~v 249 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG-I-YV 249 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE-E-EE
Confidence 689999999999999999999999999999999999985 8999999999999988 999999999999754333 2 34
Q ss_pred EeCC--C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997 213 KLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 285 (414)
Q Consensus 213 ~~~~--g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~ 285 (414)
.+.+ + +++++|.||+++|++||+++ +++++++.+ +|+|.||+++||+.|+|||+|||+..+. .
T Consensus 250 ~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p~VyAiGDv~~~~~----------l 319 (471)
T PRK06467 250 TMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM----------L 319 (471)
T ss_pred EEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCCCEEEehhhcCCcc----------c
Confidence 4433 2 46999999999999999985 467788775 5779999999999999999999986432 4
Q ss_pred HHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE--EE--c--------C
Q 014997 286 VDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI--EI--G--------N 345 (414)
Q Consensus 286 ~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~--~~--~--------~ 345 (414)
+..|..+|+.+|.||++... ..+..+|+. . |..+ .+..+|....+ .. .. . +
T Consensus 320 a~~A~~eG~~aa~~i~g~~~~~~~~~~p~~--~-~~~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~ 390 (471)
T PRK06467 320 AHKGVHEGHVAAEVIAGKKHYFDPKVIPSI--A-YTEP------EVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASD 390 (471)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCCeE--E-ECCC------ceeEEECCHHHHHhcCCCeEEEEEecCcchhhhhCC
Confidence 56699999999999996432 123345653 2 3222 13444543211 00 00 0 0
Q ss_pred CCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCCcc
Q 014997 346 FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAALPVE 411 (414)
Q Consensus 346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 411 (414)
...-|.++.++ +++|+|+++++.++.++... ..+|+.+.+++.- . +..||+++|++.+|++.+..+
T Consensus 391 ~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~ 461 (471)
T PRK06467 391 CADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGS 461 (471)
T ss_pred CCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCC
Confidence 01226667664 58999999877777766544 4467888888772 2 678999999999999776543
No 23
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=7.6e-35 Score=291.70 Aligned_cols=317 Identities=21% Similarity=0.288 Sum_probs=232.3
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 134 (414)
.+++.||++++++.+. .+.++|.+ +|+.+.||+||||||++|..++.++|.+ ...+.+ .+......++
T Consensus 100 ~l~~~gv~~~~g~~~~---~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~-----~~~~~~---~~~~~~~~~~ 167 (450)
T TIGR01421 100 NLEKNKVDVIFGHARF---TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE-----LGTDSD---GFFALEELPK 167 (450)
T ss_pred HHHhCCCEEEEEEEEE---ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc-----eeEcHH---HhhCccccCC
Confidence 3556799999985432 34567776 4667999999999999986432444422 112222 2222223478
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+++|||||++|+|+|..|+++|.+||++++.+++++ .+++++.+.+.+.|+++||++++++.+++++.+.++. ..+.+
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~ 245 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHF 245 (450)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEE
Confidence 999999999999999999999999999999999986 5899999999999999999999999999998643332 35677
Q ss_pred CCC-cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 215 EDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 215 ~~g-~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
++| +.++||.|++++|++||+++ +++.+++.+ +|+|.||+++||+.|||||+|||+..+. .+..|.
T Consensus 246 ~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD~~~~~~----------~~~~A~ 315 (450)
T TIGR01421 246 EDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGDVVGKVE----------LTPVAI 315 (450)
T ss_pred CCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEecCCCcc----------cHHHHH
Confidence 777 57999999999999999985 577888765 5779999999999999999999996432 455799
Q ss_pred HHHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------EE-EEc-----------CC
Q 014997 291 QSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TI-EIG-----------NF 346 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~~-~~~-----------~~ 346 (414)
.+|+.+|+||++... ..+..+|+ ..|..+- +..+|....+ .. ... +.
T Consensus 316 ~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 386 (450)
T TIGR01421 316 AAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYGKENIKVYNSSFTPMYYAMTSEK 386 (450)
T ss_pred HHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcCCCCEEEEEEEcChhHHHHhcCC
Confidence 999999999996432 23455665 3444321 3334433210 00 000 01
Q ss_pred CCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHH
Q 014997 347 DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIA 404 (414)
Q Consensus 347 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~ 404 (414)
..-+.++.++ +++|+|+++++..+.++... ..+|+.+.+++. .+ +..||+++|++..+
T Consensus 387 ~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 387 QKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 1125566554 69999999877777776654 456799998888 33 67999999998765
No 24
>PLN02546 glutathione reductase
Probab=100.00 E-value=6.3e-35 Score=296.67 Aligned_cols=318 Identities=22% Similarity=0.306 Sum_probs=237.1
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
+.+++.||+++.+ +++.+++. +|.+ +|+++.||+||||||++|. .|.++| +....+ ++.+......+
T Consensus 186 ~~l~~~gV~~i~G-~a~~vd~~--~V~v-~G~~~~~D~LVIATGs~p~-~P~IpG-----~~~v~~---~~~~l~~~~~~ 252 (558)
T PLN02546 186 NILKNAGVTLIEG-RGKIVDPH--TVDV-DGKLYTARNILIAVGGRPF-IPDIPG-----IEHAID---SDAALDLPSKP 252 (558)
T ss_pred HHHHhCCcEEEEe-EEEEccCC--EEEE-CCEEEECCEEEEeCCCCCC-CCCCCC-----hhhccC---HHHHHhccccC
Confidence 3355679999986 77777764 5666 5778999999999999986 454444 222222 33333333467
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.|+++||++++++.+.++...+++.+ .+.
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~ 330 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLK 330 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEE
Confidence 9999999999999999999999999999999999887 58999999999999999999999999999976444433 455
Q ss_pred eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
+.+++...+|.|++++|++||+++ ++++|++.+ +|+|.||+++||++|||||+|||+..+. .+..|.
T Consensus 331 ~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts~p~IYAaGDv~~~~~----------l~~~A~ 400 (558)
T PLN02546 331 TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRIN----------LTPVAL 400 (558)
T ss_pred ECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeCCCCEEEeeccCCCcc----------cHHHHH
Confidence 666655669999999999999985 578888875 5779999999999999999999997432 456799
Q ss_pred HHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE------------EEcCCCCc
Q 014997 291 QSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI------------EIGNFDPK 349 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~------------~~~~~~~~ 349 (414)
.+|+.+|+||++... ..+..+|+ ..|+.+. +..+|..+.+ .. ..+....-
T Consensus 401 ~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGlte~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g 471 (558)
T PLN02546 401 MEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGLTEEQAIEEYGDVDVFTANFRPLKATLSGLPDRV 471 (558)
T ss_pred HHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccCCHHHHHHcCCCeEEEEEecccchhhhhCCCCcE
Confidence 999999999997432 23455665 4565421 2223322110 00 01111123
Q ss_pred EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHh
Q 014997 350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIAR 405 (414)
Q Consensus 350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~ 405 (414)
+.++.++ +++|+|+++++.++.++... ..+|+.+.++++- . +..||++.|.+..++
T Consensus 472 ~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 472 FMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR 532 (558)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence 6677664 68999999877777776554 4567999988873 2 689999999998887
No 25
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.5e-34 Score=291.07 Aligned_cols=327 Identities=21% Similarity=0.299 Sum_probs=233.8
Q ss_pred HHHcCCeEEcCCcEEEEeCCCC-EEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQ-TLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~-~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
+++.+|+++.+. . .++.+.+ .|.+.+|+ ++.||+||||||++|.. ++|...++.+.+. +..+......
T Consensus 103 ~~~~~v~~~~g~-a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~---ipg~~~~~~~~~~----~~~~~~~~~~ 173 (466)
T PRK06115 103 FRKNKVDWIKGW-G-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTP---LPGVTIDNQRIID----STGALSLPEV 173 (466)
T ss_pred HHhCCCEEEEEE-E-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCC---CCCCCCCCCeEEC----HHHHhCCccC
Confidence 445689998863 3 4444333 44455664 69999999999998753 2444445544443 2222222345
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+.+.|++.||++++++.+++++.++++....+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~ 252 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTL 252 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEE
Confidence 799999999999999999999999999999999999985 8899999999999999999999999999986433332222
Q ss_pred Ee---CCCcEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997 213 KL---EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 287 (414)
Q Consensus 213 ~~---~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~ 287 (414)
.. .+++++++|.|++++|.+||++. ++..++..+.+++.||++++|+.|+|||+|||+..+. ...
T Consensus 253 ~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~~IyA~GD~~~~~~----------la~ 322 (466)
T PRK06115 253 EPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM----------LAH 322 (466)
T ss_pred EEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCCCEEEeeecCCCcc----------cHH
Confidence 22 12357999999999999999885 4567777765568899999999999999999997532 455
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------EcCC
Q 014997 288 HARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IGNF 346 (414)
Q Consensus 288 ~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~~~ 346 (414)
.|..||+.+|+||++... ..+..+|+. +|+.+ .+..+|....+ .. . .++
T Consensus 323 ~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~- 392 (466)
T PRK06115 323 KAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRP------EVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHE- 392 (466)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCc------ccEEeeCCHHHHHHCCCCEEEEEEecccChhhHhcCC-
Confidence 699999999999997432 234456653 33322 13344443210 10 0 111
Q ss_pred CCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCccc
Q 014997 347 DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPVEA 412 (414)
Q Consensus 347 ~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
..-|.++.++ +++|+|+++++..+.++... ..+|+.+.+++. .. +..||+++|.+.+|+..+..++
T Consensus 393 ~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~~ 463 (466)
T PRK06115 393 TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWA 463 (466)
T ss_pred CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcch
Confidence 1225666664 58999999877777766544 456788888887 33 6789999999999998766543
No 26
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=1.7e-34 Score=289.42 Aligned_cols=316 Identities=24% Similarity=0.309 Sum_probs=233.2
Q ss_pred cCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEE
Q 014997 59 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 138 (414)
Q Consensus 59 ~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 138 (414)
.||+++.|..+.. +.++|.+.+|+++.||+||||||++|.. |+..+ ..++. +.+..+...+. ..+++++|
T Consensus 105 ~gv~~~~g~~~~~---~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l~---~~~k~vvV 174 (452)
T TIGR03452 105 PNIDVYDGHARFV---GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRLP---ELPESLVI 174 (452)
T ss_pred CCeEEEEEEEEEe---cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhhh---hcCCcEEE
Confidence 7999999854432 5788988888889999999999999864 43222 22333 34455555443 24789999
Q ss_pred ECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc
Q 014997 139 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS 218 (414)
Q Consensus 139 vGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 218 (414)
||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+ +.||++++++.|++++.++++ ..+.+.+|+
T Consensus 175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~~~--v~v~~~~g~ 250 (452)
T TIGR03452 175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR-HLDEDISDRFTEIA-KKKWDIRLGRNVTAVEQDGDG--VTLTLDDGS 250 (452)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEccCcccc-ccCHHHHHHHHHHH-hcCCEEEeCCEEEEEEEcCCe--EEEEEcCCC
Confidence 99999999999999999999999999998886 47889888887755 468999999999999854333 246677888
Q ss_pred EEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHH
Q 014997 219 TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 295 (414)
Q Consensus 219 ~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 295 (414)
++++|.+++++|.+|++++ ++++|++.+ +|+|.||+++||+.|+|||+|||+..+. ....|..||+.
T Consensus 251 ~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~~ 320 (452)
T TIGR03452 251 TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEARV 320 (452)
T ss_pred EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHHH
Confidence 9999999999999999987 466788874 5779999999999999999999997432 23458999999
Q ss_pred HHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------EcCCCCcEEE
Q 014997 296 CIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IGNFDPKIAT 352 (414)
Q Consensus 296 aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~~~~~~~~~ 352 (414)
+|+||++... ..+..+|+. .|..+ .+..+|..+.+ .. . .++ ..-|.+
T Consensus 321 ~a~ni~~~~~~~~~~~~~~p~~---i~t~p------~ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~K 390 (452)
T TIGR03452 321 VKHNLLHPNDLRKMPHDFVPSA---VFTHP------QIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMED-TTGFCK 390 (452)
T ss_pred HHHHhcCCCCcccCCCCCCCeE---EECCC------CeeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCC-CCeEEE
Confidence 9999996432 234456653 33221 13344433211 00 0 011 122566
Q ss_pred EEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCCh-hh--hcCCCcHHHHHHHHhcCC
Q 014997 353 FWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK--LQQASSVEEALEIARAAL 408 (414)
Q Consensus 353 ~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 408 (414)
+.++ +++|+|+++++..+.++...- .+|+.+.+++. .. +..||++.|++++|++.+
T Consensus 391 lv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 391 LIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 6664 699999998777777665544 46788988887 33 468999999999998764
No 27
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=290.99 Aligned_cols=318 Identities=19% Similarity=0.286 Sum_probs=235.7
Q ss_pred CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997 60 GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 137 (414)
Q Consensus 60 ~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv 137 (414)
+|+++.+ +|+.+|++.+.|++.+|. ++.||+||||||++|+. |+++|.+...+++ ..+...+ ...+++++
T Consensus 111 ~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~~~---~~~~~~l---~~~~~~vv 182 (468)
T PRK14694 111 AITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE-PPVPGLAETPYLT---STSALEL---DHIPERLL 182 (468)
T ss_pred CeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC-CCCCCCCCCceEc---chhhhch---hcCCCeEE
Confidence 8999986 799999998899988873 79999999999999864 5556643222222 2222222 13468999
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC
Q 014997 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 217 (414)
Q Consensus 138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g 217 (414)
|||+|++|+|+|..|+++|.+|+++++ +++++ .+++++.+.+.+.+++.||++++++.+++++.+ ++. ..+.++++
T Consensus 183 ViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~-~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~~ 258 (468)
T PRK14694 183 VIGASVVALELAQAFARLGSRVTVLAR-SRVLS-QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNAG 258 (468)
T ss_pred EECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCC-CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECCC
Confidence 999999999999999999999999986 46776 478899999999999999999999999999754 222 23555444
Q ss_pred cEEecCEEEEccCCcCCChhh--hhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHH
Q 014997 218 STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 295 (414)
Q Consensus 218 ~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~ 295 (414)
++++|.|++++|.+|+++++ +++++..++|+|.||+++||+.|+|||+|||+..+. ....|..+|+.
T Consensus 259 -~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~ 327 (468)
T PRK14694 259 -TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSR 327 (468)
T ss_pred -EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCEEEEeecCCCcc----------cHHHHHHHHHH
Confidence 69999999999999999874 567887767889999999999999999999997543 34568899999
Q ss_pred HHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E-EEE-----------cCCCCcEEEEEE
Q 014997 296 CIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T-IEI-----------GNFDPKIATFWI 355 (414)
Q Consensus 296 aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~-~~~-----------~~~~~~~~~~~~ 355 (414)
||.||++... ..+..+|++ ..++.. +..+|....+ . ... .....-|.++.+
T Consensus 328 aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~ 398 (468)
T PRK14694 328 AAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVA 398 (468)
T ss_pred HHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHHcCCceEEEEEecccchhhhhcCCCceEEEEEE
Confidence 9999986432 223345553 222221 4445543210 0 000 001122667666
Q ss_pred e--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997 356 D--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 356 ~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 409 (414)
+ +++|+|+++++.++.++... .-+|+.+.+++. .. ...||+++|++.+++..+.
T Consensus 399 ~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 457 (468)
T PRK14694 399 ERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTFT 457 (468)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhhh
Confidence 4 69999999876677766554 446789998888 33 6789999999999888654
No 28
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=2.8e-34 Score=289.96 Aligned_cols=327 Identities=22% Similarity=0.326 Sum_probs=236.5
Q ss_pred hHHHHcCCeEEcCCcEEEEeCC-------CCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHH
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 124 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~-------~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~ 124 (414)
+.+++.+|+++.+ +++.+|+. ..+|.+.+| +++.||+||||||++|..+| +....+.+.+ +..+..
T Consensus 100 ~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~p---~~~~~~~~~~-~~~~~~ 174 (472)
T PRK05976 100 ALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELP---GLPFDGEYVI-SSDEAL 174 (472)
T ss_pred HHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCCC---CCCCCCceEE-cchHhh
Confidence 3456679999996 78889887 556777777 57999999999999986443 2223343222 223332
Q ss_pred HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997 125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204 (414)
Q Consensus 125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 204 (414)
.+ ...+++++|||||++|+|+|..|+++|.+||++++.+++++. +++++++.+.+.+++.||++++++.+++++..
T Consensus 175 ~~---~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~ 250 (472)
T PRK05976 175 SL---ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLK 250 (472)
T ss_pred Cc---cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEe
Confidence 22 234689999999999999999999999999999999998874 78899999999999999999999999999742
Q ss_pred CCCcEEEEEeCCC--cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997 205 SDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 280 (414)
Q Consensus 205 ~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~ 280 (414)
.++.+..+.+.+| ++++||.+++++|.+|+++. ++..++..++|+|.||++++|+.|+|||+|||+..+.
T Consensus 251 ~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~~------ 324 (472)
T PRK05976 251 KDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEPQ------ 324 (472)
T ss_pred cCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCcc------
Confidence 1233334455566 36999999999999999875 3556666566789999999999999999999986321
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCCCCCCC--CCceeeeccCCCCCCcceeeeEeecCCC-------cEE----------
Q 014997 281 ARVEHVDHARQSAQHCIKALLSAQTHTYDY--LPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI---------- 341 (414)
Q Consensus 281 ~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~--~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~---------- 341 (414)
.+..|..+|+.++.||++.....+++ +|+ ...++.. +..+|.... +..
T Consensus 325 ----~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~ 391 (472)
T PRK05976 325 ----LAHVAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPE-------VASVGLTEEEAKEAGYDVKVGKFPFAANG 391 (472)
T ss_pred ----cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCc-------eEEEeCCHHHHHHcCCCEEEEEEECCcch
Confidence 45679999999999998754233333 343 2222221 333343221 000
Q ss_pred ---EEcCCCCcEEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997 342 ---EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 342 ---~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 409 (414)
..+. ..-+.++.++ +++|+|+++++.++.++.. +..+|+.+.+++. .. +..||++.|.+++|++.+.
T Consensus 392 ~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 392 KALTYGE-SDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466 (472)
T ss_pred hhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence 0111 1225666664 5899999987777776654 4456789998887 33 5789999999999987653
No 29
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=2.5e-34 Score=289.88 Aligned_cols=323 Identities=22% Similarity=0.318 Sum_probs=236.6
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
+.+++.+|+++.+ ++..+ +.++|.+.+|+ .+.||+||||||++|. .|.++|.+..++++. .+. ......
T Consensus 96 ~~l~~~gv~~~~g-~~~~~--~~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~~~~---~~~---~~~~~~ 165 (463)
T TIGR02053 96 DVLSSYGVDYLRG-RARFK--DPKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGYLTS---EEA---LALDRI 165 (463)
T ss_pred HHHHhCCcEEEEE-EEEEc--cCCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCceECc---hhh---hCcccC
Confidence 4567789999986 55544 46788887764 6899999999999986 455566544444332 222 221234
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|.+|+|+|..|+++|.+||++++.+++++. +++++...+.+.+++.||+++++++|++++.++++. .+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~--~v 242 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGK--II 242 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEE--EE
Confidence 689999999999999999999999999999999999874 789999999999999999999999999998643322 33
Q ss_pred EeC---CCcEEecCEEEEccCCcCCCh-h-hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997 213 KLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 286 (414)
Q Consensus 213 ~~~---~g~~i~~D~vi~a~G~~p~~~-~-l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~ 286 (414)
.+. +++++++|.|++|+|.+|+++ + ++..++..+ +|+|.||++|||+.|+|||+|||+..+. .+
T Consensus 243 ~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiGD~~~~~~----------~~ 312 (463)
T TIGR02053 243 TVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAGDVTGGLQ----------LE 312 (463)
T ss_pred EEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEeeecCCCcc----------cH
Confidence 332 236799999999999999988 4 677788764 5779999999999999999999997532 45
Q ss_pred HHHHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-E------------Ec
Q 014997 287 DHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-E------------IG 344 (414)
Q Consensus 287 ~~A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-~------------~~ 344 (414)
..|..||+.+|.||++.....+ ..+|+ . .|..+ .+..+|....+ .. . .+
T Consensus 313 ~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~-~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~ 383 (463)
T TIGR02053 313 YVAAKEGVVAAENALGGANAKLDLLVIPR--V-VFTDP------AVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINR 383 (463)
T ss_pred hHHHHHHHHHHHHhcCCCCCccCcCCCCe--E-EeccC------ceEEEeCCHHHHHhcCCCeEEEEEecccchHHHhcC
Confidence 6799999999999996423333 33453 2 23221 13445543210 00 0 01
Q ss_pred CCCCcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCCC
Q 014997 345 NFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDKA-K-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 345 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 409 (414)
. ..-+.++.++ +++|+|+++++.++.++...- .+|+.+.+++.- . ..+||++.|.+.+|++.+.
T Consensus 384 ~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~ 452 (463)
T TIGR02053 384 D-TRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFY 452 (463)
T ss_pred C-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence 1 1225666664 699999998777777766554 467888888773 2 5689999999999998764
No 30
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.9e-34 Score=293.00 Aligned_cols=306 Identities=17% Similarity=0.277 Sum_probs=219.1
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 161 (414)
++|+++.||+||||||++|+ .|.++|.+ .+. +.++ +.. +..+++++|||+|++|+|+|..|+++|.+||+
T Consensus 196 ~~g~~i~ad~lVIATGS~P~-~P~IpG~~--~v~---ts~~---~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl 265 (561)
T PTZ00058 196 DDGQVIEGKNILIAVGNKPI-FPDVKGKE--FTI---SSDD---FFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYI 265 (561)
T ss_pred CCCcEEECCEEEEecCCCCC-CCCCCCce--eEE---EHHH---Hhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence 56778999999999999986 45555532 122 2222 222 23489999999999999999999999999999
Q ss_pred EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCCChhhh-
Q 014997 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE- 239 (414)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~~l~- 239 (414)
+++.+++++ .+++++.+.+.+.+++.||++++++.+.+++.++++.+ .+.+.+ ++++++|.|++++|++|+++.+.
T Consensus 266 i~~~~~il~-~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v-~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l 343 (561)
T PTZ00058 266 FARGNRLLR-KFDETIINELENDMKKNNINIITHANVEEIEKVKEKNL-TIYLSDGRKYEHFDYVIYCVGRSPNTEDLNL 343 (561)
T ss_pred EEecccccc-cCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcE-EEEECCCCEEEECCEEEECcCCCCCccccCc
Confidence 999999886 58999999999999999999999999999986433333 234434 45799999999999999988763
Q ss_pred -hcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCc-----------------------cCCccc-ccccHHHHHHHHH
Q 014997 240 -RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQ 294 (414)
Q Consensus 240 -~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~a~ 294 (414)
..++..++|+|.||+++||+.|||||+|||+..+.. ..+... .......|..||+
T Consensus 344 ~~~~~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~ 423 (561)
T PTZ00058 344 KALNIKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGR 423 (561)
T ss_pred cccceecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHH
Confidence 344444568899999999999999999999984321 111111 2456778999999
Q ss_pred HHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc--------EEEE-----------------cCCC
Q 014997 295 HCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE--------TIEI-----------------GNFD 347 (414)
Q Consensus 295 ~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~--------~~~~-----------------~~~~ 347 (414)
++|.||++... ..+..+|+ .+|+.+- +..+|.+..+ .+.. +...
T Consensus 424 ~aa~ni~g~~~~~~~~~~ip~---~vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (561)
T PTZ00058 424 LLADRLFGPFSRTTNYKLIPS---VIFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKE 494 (561)
T ss_pred HHHHHHhCCCCcccCCCCCCe---EEeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCC
Confidence 99999997422 23444564 3444321 2233322110 0000 0011
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhcCC
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARAAL 408 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 408 (414)
.-+.++.++ +++|+|+++++.++.++... ..+|+.+.+++.- . +..||++.|++..++..+
T Consensus 495 ~g~~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 495 KTYLKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred CeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 225566654 69999999877777776544 4567888888873 3 678999999999887654
No 31
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=3.9e-35 Score=287.07 Aligned_cols=270 Identities=23% Similarity=0.298 Sum_probs=214.1
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++.+||||+++++++|. |.++. ++.+. ...+++ .....+++++++++++.+ +|+.||+++++|.+
T Consensus 24 ~~~~I~li~~~~~~~~~-~~~~~-~~~g~-~~~~~~-----------~~~~~~~~~~~gv~~~~~-~v~~id~~~~~V~~ 88 (364)
T TIGR03169 24 PGVRVTLINPSSTTPYS-GMLPG-MIAGH-YSLDEI-----------RIDLRRLARQAGARFVIA-EATGIDPDRRKVLL 88 (364)
T ss_pred CCCEEEEECCCCCCccc-chhhH-HHhee-CCHHHh-----------cccHHHHHHhcCCEEEEE-EEEEEecccCEEEE
Confidence 57899999999999998 55553 55442 222222 234566778889999985 89999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHH----HHHhh---cCCCeEEEECCChHHHHHHHHHHh
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---EKAKKVVVVGGGYIGMEVAAAAVG 154 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~----~~~~~---~~~~~vvVvGgG~~g~e~A~~l~~ 154 (414)
++|+++.||+||||||+.+. .|.++| ..++++.+++++++.. +.... ..+++++|||+|++|+|+|..|++
T Consensus 89 ~~g~~~~yD~LviAtG~~~~-~~~i~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~ 166 (364)
T TIGR03169 89 ANRPPLSYDVLSLDVGSTTP-LSGVEG-AADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRR 166 (364)
T ss_pred CCCCcccccEEEEccCCCCC-CCCCCc-ccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHH
Confidence 99989999999999999986 455566 3456777788777665 33322 245799999999999999999975
Q ss_pred ----CC--CcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997 155 ----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228 (414)
Q Consensus 155 ----~g--~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 228 (414)
+| .+|+++ ..+.+++ .+++++...+.+.+++.||++++++.+++++.+ .+.+++|+++++|.+|++
T Consensus 167 ~~~~~g~~~~V~li-~~~~~l~-~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~------~v~~~~g~~i~~D~vi~a 238 (364)
T TIGR03169 167 RLPKRGLRGQVTLI-AGASLLP-GFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDG------ALILADGRTLPADAILWA 238 (364)
T ss_pred HHHhcCCCceEEEE-eCCcccc-cCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC------eEEeCCCCEEecCEEEEc
Confidence 34 589999 6667776 478889999999999999999999999998632 567788999999999999
Q ss_pred cCCcCCChhhhhcCCccc-CCCEEEcCCCCC-CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 229 IGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 229 ~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+|.+|+ .++...++..+ +|+|.||+++|| ++|||||+|||+..+.... ......|..||+.+|+||..
T Consensus 239 ~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~-----~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 239 TGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR-----PKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred cCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----CCchHHHHHhHHHHHHHHHH
Confidence 999998 56777777764 588999999998 9999999999998654321 12455699999999999975
No 32
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=2.7e-34 Score=288.87 Aligned_cols=317 Identities=21% Similarity=0.297 Sum_probs=230.1
Q ss_pred HHH-cCCeEEcCCcEEEEeCCCCEEEeCC--------CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHH
Q 014997 56 YKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 126 (414)
Q Consensus 56 ~~~-~~i~~~~~~~V~~id~~~~~V~~~~--------g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~ 126 (414)
+++ .||+++.| +..- .+.++|.+.+ .+.+.||+||||||++|.. |+++|.+ .+ .+..+...+
T Consensus 113 l~~~~gv~~i~G-~a~f--~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs~p~~-p~i~G~~--~~---~~~~~~~~~ 183 (486)
T TIGR01423 113 FADTEGLTFFLG-WGAL--EDKNVVLVRESADPKSAVKERLQAEHILLATGSWPQM-LGIPGIE--HC---ISSNEAFYL 183 (486)
T ss_pred hhcCCCeEEEEE-EEEE--ccCCEEEEeeccCCCCCcceEEECCEEEEecCCCCCC-CCCCChh--he---echhhhhcc
Confidence 444 48999987 4433 3456666532 2479999999999999864 4444422 12 233333221
Q ss_pred HHhhcCCCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
...+++++|||||++|+|+|..+..+ |.+||++++.+++++ .+++++++.+.+.|+++||++++++.++++..
T Consensus 184 ---~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~-~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~ 259 (486)
T TIGR01423 184 ---DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR-GFDSTLRKELTKQLRANGINIMTNENPAKVTL 259 (486)
T ss_pred ---ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc-ccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEE
Confidence 23579999999999999999877655 999999999999987 58999999999999999999999999999985
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcc
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 280 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~ 280 (414)
.+++. ..+.+.+|+++++|.+++++|++|++++ +++++++.+ +|+|.||+++||+.|||||+|||+..+.
T Consensus 260 ~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~------ 332 (486)
T TIGR01423 260 NADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVM------ 332 (486)
T ss_pred cCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCcCCCCCEEEeeecCCCcc------
Confidence 43432 3567778889999999999999999886 467888764 5779999999999999999999986432
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--E--------
Q 014997 281 ARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--I-------- 341 (414)
Q Consensus 281 ~~~~~~~~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~-------- 341 (414)
....|..||+.++.||++.... .+..+|+ ..|+.+- +..+|....+ . .
T Consensus 333 ----l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe------ia~vGlte~eA~~~~~~~~~~~~~~~~~~ 399 (486)
T TIGR01423 333 ----LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP------IGTCGLVEEDAAKKFEKVAVYESSFTPLM 399 (486)
T ss_pred ----cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc------eEEeeCCHHHHHhcCCceEEEEEeeCchh
Confidence 3445899999999999974332 2334564 4444321 3334433210 0 0
Q ss_pred --EEcCCC-CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHh
Q 014997 342 --EIGNFD-PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIAR 405 (414)
Q Consensus 342 --~~~~~~-~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~ 405 (414)
..+... .-|.++.++ +++|+|+++++..+.++... ..+|+.+.+++. .. +..||+++|++..+.
T Consensus 400 ~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 400 HNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred hhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 001111 125666664 58999999877777776554 446788888887 33 679999999999986
No 33
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.6e-34 Score=294.71 Aligned_cols=322 Identities=19% Similarity=0.275 Sum_probs=233.4
Q ss_pred HHc-CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 57 KEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 57 ~~~-~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
++. +|+++.+ +++.+++....|.+.+|+ ++.||+||||||++|. .|.++|.+... ...+.+ .......+
T Consensus 199 ~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~--~~~~~~----~~~~~~~~ 270 (561)
T PRK13748 199 DGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPIPGLKETP--YWTSTE----ALVSDTIP 270 (561)
T ss_pred hccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCCCCCCccc--eEccHH----HhhcccCC
Confidence 444 8999986 788888776677776663 6999999999999986 45555533211 222111 11112356
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|++|+|+|..|+++|.+|+++++. .+++. ++++++..+.+.+++.||++++++.+++++.+ ++. ..+.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~ 346 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLT 346 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEE
Confidence 89999999999999999999999999999985 56654 78999999999999999999999999999754 332 2355
Q ss_pred eCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
++++ ++++|.|++++|.+||+.+ ++++|+..+ +|+|.||+++||+.|||||+|||+..+. ....|.
T Consensus 347 ~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~ 415 (561)
T PRK13748 347 TGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQ----------FVYVAA 415 (561)
T ss_pred ecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCCEEEeeecCCCcc----------chhHHH
Confidence 5555 6999999999999999975 577888875 5779999999999999999999997643 334588
Q ss_pred HHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cE--EEE----------cCCCCcE
Q 014997 291 QSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFDPKI 350 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~~~~ 350 (414)
.+|+.||.||++... .++..+|+. ..++.. +..+|.... +. ... .....-|
T Consensus 416 ~~g~~aa~~i~g~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 486 (561)
T PRK13748 416 AAGTRAAINMTGGDAALDLTAMPAV--VFTDPQ-------VATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF 486 (561)
T ss_pred HHHHHHHHHHcCCCcccCCCCCCeE--EEccCC-------ceeeeCCHHHHHHcCCCeEEEEEecccCchhhhcCCCCeE
Confidence 999999999996432 123345532 222221 334444321 00 000 0011236
Q ss_pred EEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHhcCCCc
Q 014997 351 ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 351 ~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 410 (414)
.++.++ +++|+|+++++..+.++... ..+|+.+.+++.-. +..||++.|.+.+|++.+..
T Consensus 487 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 551 (561)
T PRK13748 487 IKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFNK 551 (561)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHhhc
Confidence 677775 69999999876667665544 45678898888733 67899999999999976543
No 34
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.4e-34 Score=285.13 Aligned_cols=316 Identities=19% Similarity=0.264 Sum_probs=233.9
Q ss_pred cCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCCCCCCCCCCCCC-CCCEEEecCHHHHHHHHHhhcCCCeE
Q 014997 59 KGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADADALISSLEKAKKV 136 (414)
Q Consensus 59 ~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~~~~~~~~~g~~-~~gv~~~~~~~~~~~~~~~~~~~~~v 136 (414)
.+++++.+ ++..++.....|.+.+|. ++.||+||||||++|.. |.++|.+ .+++++. ..+......++++
T Consensus 90 ~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~-p~i~G~~~~~~v~~~------~~~~~~~~~~~~v 161 (441)
T PRK08010 90 PNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVV-PPIPGITTTPGVYDS------TGLLNLKELPGHL 161 (441)
T ss_pred CCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCC-CCCCCccCCCCEECh------hHhhcccccCCeE
Confidence 48999986 788888877777777775 69999999999999864 5566643 4555432 2222223457899
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC
Q 014997 137 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 216 (414)
Q Consensus 137 vVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~ 216 (414)
+|||+|++|+|+|..|+++|.+|+++++.+++++. +++++...+.+.+++.||++++++.+++++.+ ++.+ .+.+++
T Consensus 162 ~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~ 238 (441)
T PRK08010 162 GILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEH 238 (441)
T ss_pred EEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcC
Confidence 99999999999999999999999999999998875 68899999999999999999999999999854 3332 445555
Q ss_pred CcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHH
Q 014997 217 GSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 293 (414)
Q Consensus 217 g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a 293 (414)
+ ++++|.+++++|.+||+++ ++++|+..+ +|+|.||+++||+.|||||+|||+..+. ....|..+|
T Consensus 239 g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~ 307 (441)
T PRK08010 239 A-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ----------FTYISLDDY 307 (441)
T ss_pred C-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------chhHHHHHH
Confidence 5 5999999999999999876 467788764 5789999999999999999999998543 233488899
Q ss_pred HHHHHHHhcCCCC---CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcCCCCcE
Q 014997 294 QHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGNFDPKI 350 (414)
Q Consensus 294 ~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~~~~~~ 350 (414)
+.++.||++.... .+..+|+. +|..+ .+..+|....+ . .. .++. ..+
T Consensus 308 ~~~~~~~~g~~~~~~~~~~~~p~~---~~~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~-~g~ 377 (441)
T PRK08010 308 RIVRDELLGEGKRSTDDRKNVPYS---VFMTP------PLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDT-RGV 377 (441)
T ss_pred HHHHHHHcCCCCcccCccCCCCEE---EECCC------CceeeeCCHHHHHHcCCCeEEEEEecCcChhhhhcCCC-ceE
Confidence 9999999963221 23345542 33221 13344433210 0 00 1111 226
Q ss_pred EEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCChh--hhcCCCcHHHHHHHHhc
Q 014997 351 ATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDKA--KLQQASSVEEALEIARA 406 (414)
Q Consensus 351 ~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 406 (414)
.++.++ +++|+|+++++.++.++...- -+|+.+.+++.- .+..||++.|.+..++.
T Consensus 378 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 378 LKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 677664 699999998777776665554 467888888873 36789999999988864
No 35
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=283.44 Aligned_cols=320 Identities=24% Similarity=0.346 Sum_probs=227.4
Q ss_pred cCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCC-CCEEEecCHHHHHHHHHhhcCCCe
Q 014997 59 KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSLEKAKK 135 (414)
Q Consensus 59 ~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~-~gv~~~~~~~~~~~~~~~~~~~~~ 135 (414)
.+|+++.+ +..-++...-.|...+| +++.||+||||||++|+.+ |+.+. ..+++. .+. +. ....+++
T Consensus 105 ~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~~~~v~~~---~~~--~~-~~~~~~~ 174 (466)
T PRK07818 105 NKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSLSENVVTY---EEQ--IL-SRELPKS 174 (466)
T ss_pred CCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCCCCcEEch---HHH--hc-cccCCCe
Confidence 46666654 33323332223444455 3699999999999998643 34332 233332 221 11 1124689
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~ 215 (414)
++|||+|++|+|+|..|+++|.+|+++++.+++++. ++++++..+.+.|+++||++++++.|++++.+ ++.+ .+.+.
T Consensus 175 vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~ 251 (466)
T PRK07818 175 IVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-TVTVS 251 (466)
T ss_pred EEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-EEEEE
Confidence 999999999999999999999999999999999985 78999999999999999999999999999754 2222 33443
Q ss_pred --CC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997 216 --DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288 (414)
Q Consensus 216 --~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~ 288 (414)
+| +++++|.|++++|.+||+++ +++.|+..+ +|+|.||+++||+.|+|||+|||+..+. .+..
T Consensus 252 ~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~~----------l~~~ 321 (466)
T PRK07818 252 KKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQ----------LAHV 321 (466)
T ss_pred ecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCcc----------cHhH
Confidence 56 47999999999999999885 578888764 5779999999999999999999986421 5667
Q ss_pred HHHHHHHHHHHHhcCCCC---CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcC
Q 014997 289 ARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGN 345 (414)
Q Consensus 289 A~~~a~~aa~~i~~~~~~---~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~ 345 (414)
|..||+.||.||++.... .+..+|+. .|..+ .+..+|....+ . .. .+.
T Consensus 322 A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 392 (466)
T PRK07818 322 AEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQP------QVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGD 392 (466)
T ss_pred HHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCC------CeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCC
Confidence 999999999999974322 34445642 23221 13444543211 0 00 111
Q ss_pred CCCcEEEEEEe--CCEEEEEEeecCChHHhhHHH-HHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCcc
Q 014997 346 FDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVDK-AK-LQQASSVEEALEIARAALPVE 411 (414)
Q Consensus 346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 411 (414)
..-|.++.++ +++|+|+++++..+.++...- -+|+.+.+++. .. +..||++.|++.+|++.+..+
T Consensus 393 -~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 393 -PTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGH 462 (466)
T ss_pred -CCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcC
Confidence 1225666664 589999998777777665544 45788888887 33 678999999999999877654
No 36
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=1.4e-33 Score=284.82 Aligned_cols=318 Identities=19% Similarity=0.250 Sum_probs=228.3
Q ss_pred CCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997 60 GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 137 (414)
Q Consensus 60 ~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv 137 (414)
+|+++.| ++.-++.....|.+.+|+ ++.||+||||||++|+. |.++|.+.... ..+ .+. +. ....+++++
T Consensus 121 ~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~-p~i~G~~~~~~--~~~-~~~--l~-~~~~~k~vv 192 (479)
T PRK14727 121 ALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTI-PPIPGLMDTPY--WTS-TEA--LF-SDELPASLT 192 (479)
T ss_pred CeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCC-CCCCCcCccce--ecc-hHH--hc-cccCCCeEE
Confidence 8999886 566566555566666764 69999999999999864 55555322222 111 111 11 123468999
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC
Q 014997 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG 217 (414)
Q Consensus 138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g 217 (414)
|||+|++|+|+|..|+++|.+|+++++. ++++. +++++.+.+.+.+++.||++++++.+++++..+++ ..+.++++
T Consensus 193 VIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~--~~v~~~~g 268 (479)
T PRK14727 193 VIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEKEGIEVLNNTQASLVEHDDNG--FVLTTGHG 268 (479)
T ss_pred EECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCE--EEEEEcCC
Confidence 9999999999999999999999999874 66764 78999999999999999999999999999754332 24555555
Q ss_pred cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHH
Q 014997 218 STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 294 (414)
Q Consensus 218 ~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~ 294 (414)
++++|.+++++|..||+.+ ++++++..+ +|+|.||+++||+.|+|||+|||+..+. ....|..+|+
T Consensus 269 -~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~ 337 (479)
T PRK14727 269 -ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGS 337 (479)
T ss_pred -eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCEEEeeecCCcch----------hhhHHHHHHH
Confidence 6999999999999999885 567788765 5779999999999999999999997543 2345889999
Q ss_pred HHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E---EE---------EcCCCCcEEEEE
Q 014997 295 HCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T---IE---------IGNFDPKIATFW 354 (414)
Q Consensus 295 ~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~---~~---------~~~~~~~~~~~~ 354 (414)
.+|.||++... ..+..+|+. .|..+ .+..+|....+ . .. .+....-+.+++
T Consensus 338 ~aa~~i~g~~~~~~~~~~p~~---~~~~p------~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli 408 (479)
T PRK14727 338 RAGINMTGGNATLDLSAMPAV---IFTDP------QVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFIKLV 408 (479)
T ss_pred HHHHHHcCCCcccccccCCcE---EEecC------ceeeeeCCHHHHHHcCCceEEEEEEcccCchhhhcCCCCeEEEEE
Confidence 99999996432 123345543 23221 13344443211 0 00 000112366776
Q ss_pred Ee--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997 355 ID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 355 ~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 409 (414)
++ +++|+|+++++..+.++... .-+|+.+.+++. .. ...||+++|++..|++.+.
T Consensus 409 ~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~ 468 (479)
T PRK14727 409 AEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTFR 468 (479)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhhh
Confidence 64 69999999877777666544 456788888888 33 6789999999999997654
No 37
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=1.8e-33 Score=283.57 Aligned_cols=322 Identities=21% Similarity=0.253 Sum_probs=227.3
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC--cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
.++..+|+++.| +..-+++..-.|...+| +.+.||+||||||++|+. |.++|... ...+.. .+......
T Consensus 109 ~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~-p~ipG~~~----~~~~~~---~~~~~~~~ 179 (484)
T TIGR01438 109 ALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRY-PGIPGAKE----LCITSD---DLFSLPYC 179 (484)
T ss_pred HHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCC-CCCCCccc----eeecHH---Hhhccccc
Confidence 466789999987 55555544323332343 369999999999999864 44455321 111222 23222235
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|++|+|+|..|+++|.+||++++ +++++ .+++++++.+.+.|+++||++++++.+.+++..++ . ..+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v 255 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEA-K-VKV 255 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-e-EEE
Confidence 67899999999999999999999999999997 46775 58999999999999999999999999999875433 2 245
Q ss_pred EeCCC---cEEecCEEEEccCCcCCChh--hhhcCCccc--CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccccc
Q 014997 213 KLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 285 (414)
Q Consensus 213 ~~~~g---~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~--~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~ 285 (414)
.+.++ +++++|.|++++|++||+++ +++.|+..+ +|+|.||+++||+.|+|||+|||+.... ..
T Consensus 256 ~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l 326 (484)
T TIGR01438 256 TFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKQ---------EL 326 (484)
T ss_pred EEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCcccCCCCEEEEEEecCCCc---------cc
Confidence 55555 37999999999999999986 567888764 3779999999999999999999986321 13
Q ss_pred HHHHHHHHHHHHHHHhcCCC--CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------E-EEEcCC-------
Q 014997 286 VDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IEIGNF------- 346 (414)
Q Consensus 286 ~~~A~~~a~~aa~~i~~~~~--~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~~~~~------- 346 (414)
...|..||+.+|+||++... ..+..+|+. .|..+ .+..+|....+ . +....+
T Consensus 327 ~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p------~ia~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~ 397 (484)
T TIGR01438 327 TPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPL------EYGACGLSEEKAVEKFGEENIEVFHSYFWPLEWTI 397 (484)
T ss_pred hHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCC------ceeeecCCHHHHHHhcCCCcEEEEEeecchhhhHh
Confidence 45699999999999996432 235556653 33322 12333432110 0 000000
Q ss_pred ------CCcEEEEEE-e--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcC
Q 014997 347 ------DPKIATFWI-D--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAA 407 (414)
Q Consensus 347 ------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 407 (414)
..-|.++.+ + +++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|++.+++..
T Consensus 398 ~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 398 PSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred hCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhhh
Confidence 112555554 3 5899999987766766654 4456788888887 22 67899999999998855
No 38
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-33 Score=286.99 Aligned_cols=319 Identities=19% Similarity=0.284 Sum_probs=225.6
Q ss_pred CeEEcCCcEEEEeCCCCEEEe-CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEE
Q 014997 61 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 139 (414)
Q Consensus 61 i~~~~~~~V~~id~~~~~V~~-~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVv 139 (414)
++++.+ +..-+ +.++|.+ .+|+++.||+||||||++|.. |..++.+.+++++. +++..+. ..+++++||
T Consensus 249 v~vi~G-~a~f~--~~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIV 318 (659)
T PTZ00153 249 VQVIYE-RGHIV--DKNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIV 318 (659)
T ss_pred eEEEEe-EEEEe--cCCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEE
Confidence 677765 33222 3445554 367789999999999999864 43333333445543 3444332 247899999
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCC--
Q 014997 140 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED-- 216 (414)
Q Consensus 140 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-- 216 (414)
|+|++|+|+|..|+++|.+||++++.+++++ .+++++++.+.+.+ ++.||++++++.|++++.++++....+.+.+
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~-~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~ 397 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLP-LLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQ 397 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCcccc-cCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccc
Confidence 9999999999999999999999999999998 58999999988875 6799999999999999865433322343321
Q ss_pred -----C--------cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCC------CCcEEEEccccccCCc
Q 014997 217 -----G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPLK 275 (414)
Q Consensus 217 -----g--------~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~------~~~IyA~GD~a~~~~~ 275 (414)
+ +++++|.|++|+|.+||++. +++.++..++|+|.||++|||+ +|+|||+|||+..+.
T Consensus 398 ~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~- 476 (659)
T PTZ00153 398 TGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM- 476 (659)
T ss_pred cccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc-
Confidence 1 37999999999999999987 4677887777789999999997 699999999985421
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhcCC------------CC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc--
Q 014997 276 MYDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 339 (414)
Q Consensus 276 ~~~~~~~~~~~~~A~~~a~~aa~~i~~~~------------~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-- 339 (414)
....|..||+.+++||.+.. .. .|..+|+. .|..+ .+.++|..+.+
T Consensus 477 ---------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~P------eiA~VGlTE~eA~ 538 (659)
T PTZ00153 477 ---------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTP------ELAFIGLTEKEAK 538 (659)
T ss_pred ---------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcC------ceEEeeCCHHHHH
Confidence 34569999999999998742 11 23445542 22211 02223322110
Q ss_pred --------------------EEEEcC---------------------CCCcEEEEEEe--CCEEEEEEeecCChHHhhHH
Q 014997 340 --------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL 376 (414)
Q Consensus 340 --------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~ 376 (414)
....+. ...-+.++.++ +++|+|+++++.++.++...
T Consensus 539 ~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~ 618 (659)
T PTZ00153 539 ELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHE 618 (659)
T ss_pred hcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHH
Confidence 000000 01225666664 68999999877788777655
Q ss_pred HH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCC
Q 014997 377 PT-LARSQPFVDK-AK-LQQASSVEEALEIARAALP 409 (414)
Q Consensus 377 ~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~ 409 (414)
-. +|+.+.+++. .. +..||+++|.+.+|++++.
T Consensus 619 ~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~ 654 (659)
T PTZ00153 619 GVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIA 654 (659)
T ss_pred HHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHH
Confidence 44 5788888887 33 6789999999999998765
No 39
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=7.2e-33 Score=278.52 Aligned_cols=323 Identities=19% Similarity=0.242 Sum_probs=231.7
Q ss_pred HHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 134 (414)
+++.+++++.+ ++..+|.....|..+++ +++.||+||||||++|+.+| +++.+...+++. .++ ......++
T Consensus 100 ~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~v~~~---~~~---~~~~~~~~ 171 (458)
T PRK06912 100 MKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKWIINS---KHA---MSLPSIPS 171 (458)
T ss_pred HhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCeEEcc---hHH---hCccccCC
Confidence 45568999886 67767665555665555 37999999999999986544 344333333322 222 22223468
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++++++.+++++.++ .. ..+..
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~-~~-v~~~~ 248 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIFTGAALKGLNSYK-KQ-ALFEY 248 (458)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEEECCEEEEEEEcC-CE-EEEEE
Confidence 9999999999999999999999999999999999874 788999999999999999999999999997542 22 22332
Q ss_pred CCC--cEEecCEEEEccCCcCCChh--hhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHH
Q 014997 215 EDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 290 (414)
Q Consensus 215 ~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~ 290 (414)
+| ++++||.|++++|.+|+.+. ++..++..++++|.||+++||+.|||||+|||+..+. .+..|.
T Consensus 249 -~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD~~~~~~----------la~~A~ 317 (458)
T PRK06912 249 -EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGIQ----------LAHVAF 317 (458)
T ss_pred -CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEeecCCCcc----------cHHHHH
Confidence 34 36999999999999999875 4677887765679999999999999999999986322 455699
Q ss_pred HHHHHHHHHHhcCCCC-CCCCCCceeeeccCCCCCCcceeeeEeecCCC-------cEEE-------------EcCCCCc
Q 014997 291 QSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-------------IGNFDPK 349 (414)
Q Consensus 291 ~~a~~aa~~i~~~~~~-~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~~~-------------~~~~~~~ 349 (414)
.+|+.+|.++.+.... .+..+|.. .|..+ .+..+|.... +... .+. ..-
T Consensus 318 ~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p------~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g 387 (458)
T PRK06912 318 HEGTTAALHASGEDVKVNYHAVPRC---IYTSP------EIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGE-QTG 387 (458)
T ss_pred HHHHHHHHHHcCCCCCCCcCCCCeE---EecCc------hhEEeeCCHHHHHHCCCCeEEEEEecCcchhHhhcCC-Cce
Confidence 9999999999864321 23456653 23211 0233343221 0000 011 122
Q ss_pred EEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 350 IATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
+.++.++ +++|+|+++++.++.++.. +..+|+.+.+++. .+ +..||++.|++.+|++.+..
T Consensus 388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 453 (458)
T PRK06912 388 KVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVG 453 (458)
T ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhc
Confidence 5677664 5899999987767766554 4456788888877 23 67899999999999876543
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1.1e-32 Score=277.91 Aligned_cols=327 Identities=21% Similarity=0.286 Sum_probs=235.2
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 133 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 133 (414)
.+++.|++++.+ ++..+++....|...+| .++.||+||||||++|+.+| .+ ...++. .+.+..+...+ ...+
T Consensus 98 ~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~~~-~~~~~~~~~~~---~~~~ 170 (461)
T TIGR01350 98 LLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFDGE-VVITSTGALNL---KEVP 170 (461)
T ss_pred HHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCCCc-eEEcchHHhcc---ccCC
Confidence 345678999986 56666655555555554 47999999999999987543 32 122332 22233333322 2356
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++++|||+|.+|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.+++.||++++++.+.+++.++ +.+ .+.
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~v~ 247 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVVAKALKKKGVKILTNTKVTAVEKND-DQV-VYE 247 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC-CCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC-CEE-EEE
Confidence 8999999999999999999999999999999999887 5888999999999999999999999999997543 333 355
Q ss_pred eCCC--cEEecCEEEEccCCcCCCh--hhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHH
Q 014997 214 LEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 288 (414)
Q Consensus 214 ~~~g--~~i~~D~vi~a~G~~p~~~--~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~ 288 (414)
+.+| +++++|.+|+++|.+|+.. ++++.++..+ +|+|.||+++||+.|+|||+|||+..+. .+..
T Consensus 248 ~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~IyaiGD~~~~~~----------~~~~ 317 (461)
T TIGR01350 248 NKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAIGDVIGGPM----------LAHV 317 (461)
T ss_pred EeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEeeecCCCcc----------cHHH
Confidence 5666 5799999999999999988 5788888765 4779999999999999999999987432 4667
Q ss_pred HHHHHHHHHHHHhcCCCCCC--CCCCceeeeccCCCCCCcceeeeEeecCCC-------cE--EEE----------cCCC
Q 014997 289 ARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--IEI----------GNFD 347 (414)
Q Consensus 289 A~~~a~~aa~~i~~~~~~~~--~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~-------~~--~~~----------~~~~ 347 (414)
|..+|+.+|.||.+.....+ ...|+. ..++.. +..+|.... +. ... .+..
T Consensus 318 A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (461)
T TIGR01350 318 ASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGET 388 (461)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCCCCeEEEEEeCccchHHHhcCCC
Confidence 99999999999986432133 334442 122211 223332211 00 000 0011
Q ss_pred CcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 348 PKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 348 ~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
.-+.++.++ +++|+|+++++.++.++... ..+|+.+.++++ .. +..+|++.|.+.++++.+..
T Consensus 389 ~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~ 456 (461)
T TIGR01350 389 DGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALG 456 (461)
T ss_pred ceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhcc
Confidence 225666664 58999999877777766544 456799988887 22 67899999999999877544
No 41
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.2e-32 Score=274.90 Aligned_cols=324 Identities=20% Similarity=0.330 Sum_probs=232.7
Q ss_pred HHHcCCeEEcCCcEEEEeC--CCCEEEeC--CCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997 56 YKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 131 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~--~~~~V~~~--~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 131 (414)
++..+|+++.+ ++..++. +.++|.+. ++++++||+||||||++|+.+|.+ + ..+...+. ..+ +.....
T Consensus 110 ~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~-~--~~~~~~~~-~~~---~~~~~~ 181 (475)
T PRK06327 110 FKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV-P--FDNKIILD-NTG---ALNFTE 181 (475)
T ss_pred HHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC-C--CCCceEEC-cHH---Hhcccc
Confidence 45579999986 6666663 34677664 346799999999999998644432 1 22222221 122 222223
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++ .+++++...+.+.++++||++++++.|++++.++++ + .
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~-v-~ 258 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKG-V-S 258 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC-cCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCE-E-E
Confidence 578999999999999999999999999999999999887 478899999999999999999999999999865332 2 3
Q ss_pred EEeCC--C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccc
Q 014997 212 VKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 284 (414)
Q Consensus 212 v~~~~--g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~ 284 (414)
+.+.+ | +++++|.+++++|.+|++++ ++++++..+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~~---------- 328 (475)
T PRK06327 259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPM---------- 328 (475)
T ss_pred EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCcc----------
Confidence 44433 3 47999999999999999884 467787764 5789999999999999999999987432
Q ss_pred cHHHHHHHHHHHHHHHhcCCC-CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EEE-------------E
Q 014997 285 HVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-------------I 343 (414)
Q Consensus 285 ~~~~A~~~a~~aa~~i~~~~~-~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~~-------------~ 343 (414)
....|..||..+|.||++... ..+..+|+.. |..+ .+..+|....+ ... .
T Consensus 329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~p------e~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 399 (475)
T PRK06327 329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSP------EIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAM 399 (475)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCc------ceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhc
Confidence 455699999999999986432 2344556532 3221 13334433211 000 0
Q ss_pred cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 344 GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 344 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
+. ..-|.++.++ +++|+|+++++.++.++... .-+|+.+.+++. .. +..||++.|.+++|+..+..
T Consensus 400 ~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 470 (475)
T PRK06327 400 GE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDK 470 (475)
T ss_pred CC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhcc
Confidence 11 1236667664 69999999877777766544 456799998887 23 57899999999999866543
No 42
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=4.5e-32 Score=273.40 Aligned_cols=319 Identities=23% Similarity=0.324 Sum_probs=228.0
Q ss_pred HHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHHHHHhhcC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSLEK 132 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~~~~~~~~ 132 (414)
++..+++++.+ ++..++. +.+.+ +++++.||+||||||++ .|.++|.. ...+++ ..+... ....
T Consensus 102 ~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~~~~---~~~~~~---~~~~ 168 (460)
T PRK06292 102 EKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVWLILGDRLLT---SDDAFE---LDKL 168 (460)
T ss_pred HhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCcccCCCcEEC---chHHhC---cccc
Confidence 34567888765 4554543 45555 67789999999999998 12334431 223332 222222 2235
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++...+.+.++++ |++++++.+++++.+++..+ .+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~~ 245 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP-LEDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-EE 245 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-chhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-EE
Confidence 78999999999999999999999999999999999887 48899999999999999 99999999999975433122 23
Q ss_pred EeCCC--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHH
Q 014997 213 KLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 287 (414)
Q Consensus 213 ~~~~g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~ 287 (414)
.+.++ +++++|.+++++|.+|+++. ++++++..+ +|+|.||+++||+.|+|||+|||+..+. .+.
T Consensus 246 ~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~~----------~~~ 315 (460)
T PRK06292 246 LEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKPP----------LLH 315 (460)
T ss_pred EEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCcc----------chh
Confidence 23333 57999999999999999984 577888764 5779999999999999999999987432 345
Q ss_pred HHHHHHHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------E--EE-----------EcC
Q 014997 288 HARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IE-----------IGN 345 (414)
Q Consensus 288 ~A~~~a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~--~~-----------~~~ 345 (414)
.|..||+.+|.||++.... .+..+|+ ..|..+ .+..+|....+ . .. .+.
T Consensus 316 ~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~------~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 386 (460)
T PRK06292 316 EAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDP------QIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGK 386 (460)
T ss_pred HHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCC------ccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCC
Confidence 6999999999999863222 2344554 233221 13344443211 0 00 011
Q ss_pred CCCcEEEEEEe--CCEEEEEEeecCChHHhhH-HHHHHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 346 FDPKIATFWID--SGKLKGVLVESGSPEEFQL-LPTLARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 346 ~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
..-+.++.++ +++|+|+++++.++.++.. +..+|+.+.+++. .. ...||++.|++.++++.+..
T Consensus 387 -~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~ 455 (460)
T PRK06292 387 -NDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFS 455 (460)
T ss_pred -CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhh
Confidence 1225666664 5899999987777766654 4556799998887 33 67999999999999887654
No 43
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=6.1e-32 Score=270.62 Aligned_cols=319 Identities=18% Similarity=0.221 Sum_probs=227.1
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCC---CcEEecCeEEEccCCCCCCCCCCCCC-CCCCEEEecCHHHHHHHHHh
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALISS 129 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~---g~~~~yd~LviAtG~~~~~~~~~~g~-~~~gv~~~~~~~~~~~~~~~ 129 (414)
+.+.+.+|+++.+ ++.. .+.++|.+.+ ..++.||+||||||++|+. |.++|. +.+++++. ..+...
T Consensus 84 ~~~~~~gV~~~~g-~~~~--~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~~------~~~~~~ 153 (438)
T PRK07251 84 AMLAGSGVDLYDA-EAHF--VSNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYDS------TGIQSL 153 (438)
T ss_pred HHHHhCCCEEEEE-EEEE--ccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEch------HHHhcc
Confidence 4567789999986 4443 3456666543 2469999999999999864 455664 23444432 222222
Q ss_pred hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997 130 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209 (414)
Q Consensus 130 ~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 209 (414)
...+++++|||+|++|+|+|..|++.|.+|+++++.++++++ .++++...+.+.+++.||++++++++++++.+ ++.+
T Consensus 154 ~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~v 231 (438)
T PRK07251 154 ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLLNAHTTEVKND-GDQV 231 (438)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCEE
Confidence 345789999999999999999999999999999999999875 68889999999999999999999999999753 2322
Q ss_pred EEEEeCCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccH
Q 014997 210 AAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 286 (414)
Q Consensus 210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~ 286 (414)
.+. .+|+++++|.+|+|+|.+|+.+. +++.++..+ +|+|.||+++||+.|||||+|||+..+. ..
T Consensus 232 -~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----------~~ 299 (438)
T PRK07251 232 -LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----------FT 299 (438)
T ss_pred -EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc----------cH
Confidence 233 45678999999999999999875 455676653 5789999999999999999999986432 22
Q ss_pred HHHHHHHHHHHHHHhcCCC---CCCCCCCceeeeccCCCCCCcceeeeEeecCCCc-------EE-------------EE
Q 014997 287 DHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TI-------------EI 343 (414)
Q Consensus 287 ~~A~~~a~~aa~~i~~~~~---~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~-------~~-------------~~ 343 (414)
..|..+|+.++.++++... ..+..+|+. ..++.. +..+|....+ .. ..
T Consensus 300 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~ 370 (438)
T PRK07251 300 YISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVN 370 (438)
T ss_pred hHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCcchhhhhc
Confidence 3477889999998886432 122345543 222221 3334432210 00 00
Q ss_pred cCCCCcEEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChh-h-hcCCCcHHHHHHHHhc
Q 014997 344 GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKA-K-LQQASSVEEALEIARA 406 (414)
Q Consensus 344 ~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ 406 (414)
++. .-+.++.++ +++|+|+++++.++.++... .-+|+.+.+++.- . +..||++.|.+.++.+
T Consensus 371 ~~~-~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 437 (438)
T PRK07251 371 NDL-RGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLFN 437 (438)
T ss_pred CCC-cEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHhc
Confidence 110 125666664 58999999877777776554 4467888888873 2 6799999999988754
No 44
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.3e-31 Score=271.18 Aligned_cols=315 Identities=19% Similarity=0.219 Sum_probs=220.7
Q ss_pred cCCeEEcCCcEEEEeCCCCEEEeCC---CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCe
Q 014997 59 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 135 (414)
Q Consensus 59 ~~i~~~~~~~V~~id~~~~~V~~~~---g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 135 (414)
.+|+++.+ ++.. .+.++|.+.+ ++.+.||+||||||++|+.++.++|... ...+..+. ......+++
T Consensus 115 ~~v~~i~g-~a~~--~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G~~~----~~~~~~~~---~~~~~~~~~ 184 (499)
T PTZ00052 115 SKVEYING-LAKL--KDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKE----YSITSDDI---FSLSKDPGK 184 (499)
T ss_pred cCcEEEEE-EEEE--ccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCCccc----eeecHHHH---hhhhcCCCe
Confidence 57777765 4443 3445666532 3579999999999999864333444321 11222332 222235689
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~ 215 (414)
++|||+|++|+|+|..|+++|.+||++++. .+++ .+++++++.+.+.|++.||++++++.+++++..+ +. ..+.+.
T Consensus 185 vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~ 260 (499)
T PTZ00052 185 TLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFS 260 (499)
T ss_pred EEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEEC
Confidence 999999999999999999999999999874 6665 5899999999999999999999999999997543 22 356778
Q ss_pred CCcEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHH
Q 014997 216 DGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 292 (414)
Q Consensus 216 ~g~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~ 292 (414)
+|+++++|.|++++|.+||++++ ++++++.+ +|++.+++. +|+.|+|||+|||+.... ..+..|..|
T Consensus 261 ~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~ 330 (499)
T PTZ00052 261 DGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKA 330 (499)
T ss_pred CCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cCCCCCEEEEEEecCCCc---------ccHHHHHHH
Confidence 88899999999999999999875 57788765 466777777 999999999999986221 156679999
Q ss_pred HHHHHHHHhcCCCC--CCCCCCceeeeccCCCCCCcceeeeEeecCCCc---------E-EE-----------------E
Q 014997 293 AQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------T-IE-----------------I 343 (414)
Q Consensus 293 a~~aa~~i~~~~~~--~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~---------~-~~-----------------~ 343 (414)
|+.+|.||++.... .+..+|+. .|..+- +..+|....+ . +. .
T Consensus 331 g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlte~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (499)
T PTZ00052 331 GILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHE 401 (499)
T ss_pred HHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCCHHHHHHhcCCCCEEEEEeecccchhhcccccccc
Confidence 99999999964322 23445553 343221 2223321100 0 00 0
Q ss_pred cC---------CCCcEEEEEEe---CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhc
Q 014997 344 GN---------FDPKIATFWID---SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARA 406 (414)
Q Consensus 344 ~~---------~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 406 (414)
+. ...-|.++.++ +++|+|+++++.++.++...-. +|+.+.+++. .. +..||+++|++..+.-
T Consensus 402 ~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~~ 479 (499)
T PTZ00052 402 RARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNLSV 479 (499)
T ss_pred ccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEEEe
Confidence 00 01225666553 4999999997778877765544 5788888877 33 6799999998876543
No 45
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=264.56 Aligned_cols=302 Identities=27% Similarity=0.337 Sum_probs=248.9
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
++.+|+++..+++.+|.+++++..+..+ .....++ ..... +..+.+++++.+++|+.+|++.+.|.+
T Consensus 22 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~-~~~~~~i~~~~~~~v~~id~~~~~v~~ 88 (415)
T COG0446 22 LAAEITLIGREPKYSYYRCPLSLYVGGG-IASLEDL-----------RYPPR-FNRATGIDVRTGTEVTSIDPENKVVLL 88 (415)
T ss_pred CCCCEEEEeCCCCCCCCCCccchHHhcc-cCCHHHh-----------cccch-hHHhhCCEEeeCCEEEEecCCCCEEEE
Confidence 6789999999999999999999844333 3333333 12222 335779999999999999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEE
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 161 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 161 (414)
.+| ++.||+|++|||+++...+ +....++++++...+...+.......++++|+|+|++|+|+|..++++|++|++
T Consensus 89 ~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l 164 (415)
T COG0446 89 DDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTL 164 (415)
T ss_pred CCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 999 7999999999999987544 555788999999999988877666678999999999999999999999999999
Q ss_pred EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE-EEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997 162 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA-VKLEDGSTIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 162 v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
++..++++++.+.+++.+.+.+.++++||+++++..+.+++...+..... +...++..+++|++++++|.+||..+..+
T Consensus 165 ~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~ 244 (415)
T COG0446 165 IEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLAND 244 (415)
T ss_pred EEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhh
Confidence 99999998853328899999999999999999999999998643322211 57788889999999999999999777776
Q ss_pred cC--CcccCCCEEEcCCCCCC-CCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeee
Q 014997 241 VG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSR 317 (414)
Q Consensus 241 ~g--l~~~~g~i~vd~~~~t~-~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~ 317 (414)
.+ +...+|+|.||++++|+ .++|||+|||+..+....+......+|+.|..+++.++.++.+. ......+++.|.+
T Consensus 245 ~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~~~~~~~~~~~ 323 (415)
T COG0446 245 ALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRIPGLLGTVISD 323 (415)
T ss_pred CccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-cccccccCceEEE
Confidence 65 44556789999999997 99999999999987665444555778999999999999999865 3333567888888
Q ss_pred ccCC
Q 014997 318 VFEY 321 (414)
Q Consensus 318 ~~~~ 321 (414)
++++
T Consensus 324 ~~~~ 327 (415)
T COG0446 324 VGDL 327 (415)
T ss_pred EcCe
Confidence 8875
No 46
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.98 E-value=1.9e-30 Score=239.26 Aligned_cols=328 Identities=21% Similarity=0.393 Sum_probs=241.3
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 131 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 131 (414)
..+++++|++..| .-.-++|..-++.-.||+ .+.++++||||||.-.++ ||..+++-.... -..+..+ -.
T Consensus 138 ~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~---PGI~IDekkIVS-StgALsL---~~ 209 (506)
T KOG1335|consen 138 NLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPF---PGITIDEKKIVS-STGALSL---KE 209 (506)
T ss_pred HHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCC---CCeEecCceEEe-cCCccch---hh
Confidence 4567788888877 344466666666666664 689999999999964333 343333211111 1112221 23
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
-+++++|||+|.+|+|++....++|.+||+++..+.+.+. +|.+++..+++.|.++|++|+++++|...+.+.+|.+ .
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~ 287 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-E 287 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCce-E
Confidence 5799999999999999999999999999999999999985 9999999999999999999999999999998878754 3
Q ss_pred EEeCC---C--cEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCccccc
Q 014997 212 VKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 283 (414)
Q Consensus 212 v~~~~---g--~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~ 283 (414)
+++.+ + ++++||.+++++|++|-+.- +++.|+..| +++|.||..++|.+|+||++|||...|..
T Consensus 288 i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~gpML-------- 359 (506)
T KOG1335|consen 288 IEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTLGPML-------- 359 (506)
T ss_pred EEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccccccccCCceEEecccCCcchh--------
Confidence 44422 2 47999999999999998764 567787765 68899999999999999999999987652
Q ss_pred ccHHHHHHHHHHHHHHHhcCC-CCCCCCCCceeeeccCCCCCCcceeeeEeecCCCcE------EEEcCC----------
Q 014997 284 EHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET------IEIGNF---------- 346 (414)
Q Consensus 284 ~~~~~A~~~a~~aa~~i~~~~-~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~------~~~~~~---------- 346 (414)
..-|..+|..+...|.++. ...|.-+|- ..|+++- +.++|..+.++ +..|.+
T Consensus 360 --AhkAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEeqlkeegi~y~vgkfpF~aNsRakt 428 (506)
T KOG1335|consen 360 --AHKAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKT 428 (506)
T ss_pred --hhhhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchhhHHhcCcceEeeeccccccchhhc
Confidence 2347888988888888754 345666663 4555542 33455543311 112221
Q ss_pred ---CCcEEEEEEe--CCEEEEEEeecCChHHhhHHHH-HHhCCCCCCh-hh-hcCCCcHHHHHHHHhcCCCc
Q 014997 347 ---DPKIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVDK-AK-LQQASSVEEALEIARAALPV 410 (414)
Q Consensus 347 ---~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 410 (414)
...|.+...+ ++||+|++++.+++.++..-.. .+..+...++ +. ...||+++|++++|..+++.
T Consensus 429 n~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 429 NNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD 500 (506)
T ss_pred cCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhhc
Confidence 1235565554 7999999998888888765554 4577777777 33 58999999999999988765
No 47
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.96 E-value=7.8e-29 Score=248.13 Aligned_cols=228 Identities=24% Similarity=0.303 Sum_probs=173.9
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHH--
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS-- 128 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~-- 128 (414)
..+++++.||++++++.+ .+.|.+++.. ..||+||||||+ .|+ .+.++|.+.+++++..++.+...+..
T Consensus 189 ~~~~l~~~gv~~~~~~~v------~~~v~~~~~~-~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~ 260 (449)
T TIGR01316 189 EIKTLKKLGVTFRMNFLV------GKTATLEELF-SQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAY 260 (449)
T ss_pred HHHHHHhCCcEEEeCCcc------CCcCCHHHHH-hhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccc
Confidence 456778899999998643 3445555443 579999999998 565 45567877888887665543332221
Q ss_pred -------hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 129 -------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 129 -------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
....+++|+|||+|++|+|+|..|.++|.+||++.+.++.. ++. .....+.+++.||++++++.+.++
T Consensus 261 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~---~~~--~~~~~~~l~~~GV~~~~~~~~~~i 335 (449)
T TIGR01316 261 EFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTRED---MTA--RVEEIAHAEEEGVKFHFLCQPVEI 335 (449)
T ss_pred cccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCccc---CCC--CHHHHHHHHhCCCEEEeccCcEEE
Confidence 12357999999999999999999999999999999876421 111 122335678899999999999999
Q ss_pred EecCCCcEEEEEeC---------CC-----------cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCC
Q 014997 202 EAGSDGRVAAVKLE---------DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRM 260 (414)
Q Consensus 202 ~~~~~~~~~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~ 260 (414)
..++++++..|.+. +| +++++|.||+++|..|+..++++.++..+ +|+|.||++++|+.
T Consensus 336 ~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~ 415 (449)
T TIGR01316 336 IGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSI 415 (449)
T ss_pred EEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCC
Confidence 76556666555542 22 26999999999999999988888888765 57899999999999
Q ss_pred CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
|+|||+|||+..+. .+..|+.+|+.||.+|..
T Consensus 416 ~~VfA~GD~~~g~~----------~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 416 PGVFAGGDIILGAA----------TVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CCEEEecCCCCCcH----------HHHHHHHHHHHHHHHHHh
Confidence 99999999986432 566799999999999863
No 48
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.96 E-value=6.9e-28 Score=229.24 Aligned_cols=227 Identities=24% Similarity=0.350 Sum_probs=174.6
Q ss_pred CCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHH
Q 014997 49 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADA 123 (414)
Q Consensus 49 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~ 123 (414)
.....++++++++++++ ++|+.++++++ .|.+.+++++.||+||+|||+++.. +.++|.+ ..++++.....
T Consensus 60 ~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~-~~i~g~~~~~~~~~~~~~~~~-- 135 (300)
T TIGR01292 60 MEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARK-LGIPGEDEFLGRGVSYCATCD-- 135 (300)
T ss_pred HHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCccc-CCCCChhhcCCccEEEeeecC--
Confidence 34456678889999998 79999998765 6777778889999999999998763 4455532 12344332211
Q ss_pred HHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhC-CcEEEcCceEEEEE
Q 014997 124 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKGASIKNLE 202 (414)
Q Consensus 124 ~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~ 202 (414)
.....+++++|||+|.+|+|+|..|++.+.+|+++++.+.+.. ...+.+.+++. ||++++++.++++.
T Consensus 136 ----~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~-------~~~~~~~l~~~~gv~~~~~~~v~~i~ 204 (300)
T TIGR01292 136 ----GPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA-------EKILLDRLRKNPNIEFLWNSTVKEIV 204 (300)
T ss_pred ----hhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc-------CHHHHHHHHhCCCeEEEeccEEEEEE
Confidence 1234678999999999999999999999999999999875431 23445666777 99999999999997
Q ss_pred ecCCCcEEEEEeC-----CCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCcc
Q 014997 203 AGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 276 (414)
Q Consensus 203 ~~~~~~~~~v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~ 276 (414)
.+ +.+..+.+. +++++++|.+++|+|++|+.++++.+ +..+ +|++.||++++|++|||||+|||+....
T Consensus 205 ~~--~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~~-- 279 (300)
T TIGR01292 205 GD--NKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKGY-- 279 (300)
T ss_pred cc--CcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcch--
Confidence 53 344444442 23579999999999999998888776 5543 5789999999999999999999997421
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 014997 277 YDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 277 ~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
..+..|+.+|+.||.+|..
T Consensus 280 -------~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 280 -------RQAVTAAGDGCIAALSAER 298 (300)
T ss_pred -------hhhhhhhhhHHHHHHHHHh
Confidence 2567799999999999863
No 49
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=7.4e-28 Score=219.54 Aligned_cols=287 Identities=24% Similarity=0.354 Sum_probs=212.5
Q ss_pred HHcCCeEEcCCcEEEEeCCCCEEEeCCCc--EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCC
Q 014997 57 KEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 134 (414)
Q Consensus 57 ~~~~i~~~~~~~V~~id~~~~~V~~~~g~--~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 134 (414)
.+.+|+++.| +..-+++..-+|...+|+ .+++.+++||||++|. .|.+||..+ . .+++.+.+....++
T Consensus 121 ~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~-----g---idSDgff~Lee~Pk 190 (478)
T KOG0405|consen 121 AKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL-----G---IDSDGFFDLEEQPK 190 (478)
T ss_pred cccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh-----c---cccccccchhhcCc
Confidence 3457888886 666677777788888885 3788999999999986 566555432 1 12333333345789
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+++|||+|++++|+|..++.+|.+++++.|.+.+|. .||+.++..+.+.++.+||++|.++.++++.+..++... +..
T Consensus 191 r~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~-~i~ 268 (478)
T KOG0405|consen 191 RVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL-VIT 268 (478)
T ss_pred eEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhhcceeecccccceeeeecCCCceE-EEE
Confidence 999999999999999999999999999999999996 699999999999999999999999999999887666554 344
Q ss_pred CCCcEEecCEEEEccCCcCCChh--hhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHH
Q 014997 215 EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 291 (414)
Q Consensus 215 ~~g~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~ 291 (414)
..|....+|.++||+|..||+.- |++.|++.+ +|.|.||++.+|++|+||++||++.-- +.-..|..
T Consensus 269 ~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~----------~LTPVAia 338 (478)
T KOG0405|consen 269 SHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKI----------NLTPVAIA 338 (478)
T ss_pred eccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcE----------ecchHHHh
Confidence 55555669999999999999864 678898875 678999999999999999999998743 24456889
Q ss_pred HHHHHHHHHhcCC---CCCCCCCCceeeeccCCCCCCcceeeeEeecCCCcEE----------E-----------EcCCC
Q 014997 292 SAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI----------E-----------IGNFD 347 (414)
Q Consensus 292 ~a~~aa~~i~~~~---~~~~~~~p~~~~~~~~~~g~~~~~~~~~~G~~~~~~~----------~-----------~~~~~ 347 (414)
.|+..++.+.+.. ...|..+|- .+|..+. +-.+|..+.+.+ . .+..+
T Consensus 339 agr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~ 409 (478)
T KOG0405|consen 339 AGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKE 409 (478)
T ss_pred hhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCc
Confidence 9999999998732 234666663 5555432 222333322110 0 11111
Q ss_pred CcEEEEEE--eCCEEEEEEeecCChHHhh
Q 014997 348 PKIATFWI--DSGKLKGVLVESGSPEEFQ 374 (414)
Q Consensus 348 ~~~~~~~~--~~~~~~g~~~~~~~~~~~~ 374 (414)
.-+.++.. ++++++|++++..++.++.
T Consensus 410 kt~mKlvc~~~~eKVvG~hm~G~~s~Eil 438 (478)
T KOG0405|consen 410 KTLMKLVCAGKSEKVVGVHMCGDDSAEIL 438 (478)
T ss_pred ceEEEEEEecCCCcEEEEEEecCCcHHHH
Confidence 12334443 4799999999777666553
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.96 E-value=3.7e-28 Score=247.35 Aligned_cols=234 Identities=26% Similarity=0.374 Sum_probs=176.6
Q ss_pred cCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEec
Q 014997 44 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIR 118 (414)
Q Consensus 44 ~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~ 118 (414)
.+.++..+..+++++++++++.+++|+.++.+. ..|.+.+|+.+.||+||+|||++++. +.++|.. ..++++..
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~ 343 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCP 343 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEee
Confidence 334444455677788899999999999998765 46777888889999999999999864 4455531 23454443
Q ss_pred CHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CCcEEEcCce
Q 014997 119 DVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKGAS 197 (414)
Q Consensus 119 ~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~gv~i~~~~~ 197 (414)
..+ .....+++|+|||||++|+|+|..|++.+.+||++++.+.+.. ...+.+.+++ .||++++++.
T Consensus 344 ~~~------~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~~~~ 410 (515)
T TIGR03140 344 HCD------GPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILTSAQ 410 (515)
T ss_pred ccC------hhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEECCe
Confidence 221 1234689999999999999999999999999999998876532 2345666666 6999999999
Q ss_pred EEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccccc
Q 014997 198 IKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 271 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~a~ 271 (414)
++++..+ ++.+..+.+.+ | ++++||.|++++|.+|++++++.. +..+ +|+|.||+++||++|+|||+|||+.
T Consensus 411 v~~i~~~-~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~ 488 (515)
T TIGR03140 411 TTEIVGD-GDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTT 488 (515)
T ss_pred eEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccC
Confidence 9999743 35555666643 2 469999999999999999998776 6654 5789999999999999999999998
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 272 FPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 272 ~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.+.. .+..|+.+|..||.++..
T Consensus 489 ~~~~---------~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 489 VPYK---------QIIIAMGEGAKAALSAFD 510 (515)
T ss_pred Cccc---------eEEEEEccHHHHHHHHHH
Confidence 6542 112366677777766653
No 51
>PRK10262 thioredoxin reductase; Provisional
Probab=99.96 E-value=2e-27 Score=228.57 Aligned_cols=230 Identities=20% Similarity=0.281 Sum_probs=168.6
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeC-CCcEEecCeEEEccCCCCCCCCCCCCCC---CCCEEEecCHHHHHH
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA 125 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~-~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~gv~~~~~~~~~~~ 125 (414)
.+..++...++++++.+ +|+.|+...+.+++. +...+.||+||||||++++. |.++|.+ ..++++.....
T Consensus 67 ~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~-~~i~g~~~~~~~~v~~~~~~~---- 140 (321)
T PRK10262 67 ERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASARY-LGLPSEEAFKGRGVSACATCD---- 140 (321)
T ss_pred HHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCC-CCCCCHHHcCCCcEEEeecCC----
Confidence 34456666778888875 788888876654332 23368999999999999864 4555532 23444433221
Q ss_pred HHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997 126 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205 (414)
Q Consensus 126 ~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 205 (414)
.....+++++|||+|.+|+|+|..|++++.+|+++++.+.+. .++.+.+.+.+.+++.||++++++.++++..+
T Consensus 141 --~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~- 214 (321)
T PRK10262 141 --GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHTNRTLEEVTGD- 214 (321)
T ss_pred --HHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEeCCEEEEEEcC-
Confidence 123468999999999999999999999999999999987653 34567778888899999999999999999754
Q ss_pred CCcEEEEEeCCC------cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC-----CCCCCCCcEEEEccccccCC
Q 014997 206 DGRVAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPL 274 (414)
Q Consensus 206 ~~~~~~v~~~~g------~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~-----~~~t~~~~IyA~GD~a~~~~ 274 (414)
++.+..+++.++ +++++|.|++++|.+||..++.. ++..++|+|.||+ +++|++|+|||+|||+..+.
T Consensus 215 ~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~ 293 (321)
T PRK10262 215 QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY 293 (321)
T ss_pred CccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCCc
Confidence 333445555432 47999999999999999887654 5666668899997 68999999999999997543
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 275 KMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 275 ~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
. .+..|+.+|..||..+.
T Consensus 294 ~---------~~~~A~~~g~~Aa~~~~ 311 (321)
T PRK10262 294 R---------QAITSAGTGCMAALDAE 311 (321)
T ss_pred c---------eEEEEehhHHHHHHHHH
Confidence 2 11125555666555544
No 52
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.95 E-value=1.2e-26 Score=244.83 Aligned_cols=242 Identities=23% Similarity=0.320 Sum_probs=174.9
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEec-CHHHHHHHHHh
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-DVADADALISS 129 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~-~~~~~~~~~~~ 129 (414)
+..+++++.||++++++.+ .++ +++.+...||+||||||+++...+.++|.+ +++++.. .+.+.......
T Consensus 594 ~die~l~~~GVe~~~gt~V-di~-------le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~ 664 (1019)
T PRK09853 594 HDIEFVKAHGVKFEFGCSP-DLT-------VEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTA 664 (1019)
T ss_pred HHHHHHHHcCCEEEeCcee-EEE-------hhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhccc
Confidence 4457788899999998766 232 233445679999999999854334445543 4554322 12222122233
Q ss_pred hcCCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCC
Q 014997 130 LEKAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSD 206 (414)
Q Consensus 130 ~~~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~ 206 (414)
...+++|+|||||++|+|+|..+.+. | .+|+++.|++. .++. . ...+.+.+ +.||+++.+..+.++.. +
T Consensus 665 ~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~~~~p~~I~~--d 736 (1019)
T PRK09853 665 LKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKELLNPESFDA--D 736 (1019)
T ss_pred ccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEeCCceEEEEc--C
Confidence 45689999999999999999998887 4 48999998763 3331 2 23344433 57999999988888863 2
Q ss_pred CcE----------------EEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcEEEEccc
Q 014997 207 GRV----------------AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 269 (414)
Q Consensus 207 ~~~----------------~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~IyA~GD~ 269 (414)
+.+ ..+..+++.+++||.||+|+|.+|+.+++++.|+..+ +|+|.||++++|+.|+|||+|||
T Consensus 737 G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~ 816 (1019)
T PRK09853 737 GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816 (1019)
T ss_pred CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEecc
Confidence 322 1223344568999999999999999999988888764 57899999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeecc
Q 014997 270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF 319 (414)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~~~~~~~p~~~~~~~ 319 (414)
+..+. .+..|+.+|+.||++|++.....+...|+||+..+
T Consensus 817 a~Gp~----------tvv~Ai~qGr~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 817 QRGPS----------TIVAAIADARRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred ccCch----------HHHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Confidence 86543 45679999999999999766667777888877654
No 53
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.95 E-value=3.6e-27 Score=221.10 Aligned_cols=267 Identities=22% Similarity=0.332 Sum_probs=192.5
Q ss_pred CcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhH-HHHc--CCeEEcCCcEEEEeCCCCEEE
Q 014997 4 GRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW-YKEK--GIEMIYQDPVTSIDIEKQTLI 80 (414)
Q Consensus 4 g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~-~~~~--~i~~~~~~~V~~id~~~~~V~ 80 (414)
-.|++|+..+|+-|- |+|+- .-.|.-. ...+ ..+... .++. ++.++. ++.+.||++++.|+
T Consensus 79 YdV~vVSPRnyFlFT-PLLpS-~~vGTve-~rSI------------vEPIr~i~r~k~~~~~y~e-Aec~~iDp~~k~V~ 142 (491)
T KOG2495|consen 79 YDVTVVSPRNYFLFT-PLLPS-TTVGTVE-LRSI------------VEPIRAIARKKNGEVKYLE-AECTKIDPDNKKVH 142 (491)
T ss_pred cceEEeccccceEEe-eccCC-cccccee-ehhh------------hhhHHHHhhccCCCceEEe-cccEeecccccEEE
Confidence 368999998888775 66653 3333111 0000 122222 2222 566766 68999999999887
Q ss_pred eC----CC----cEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh----cC-------------CCe
Q 014997 81 TN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL----EK-------------AKK 135 (414)
Q Consensus 81 ~~----~g----~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~----~~-------------~~~ 135 (414)
++ ++ ..+.|||||+|+|+.+.. ..+||- .++.+.++..+|+++++..+ .+ --+
T Consensus 143 ~~s~t~~~~~~e~~i~YDyLViA~GA~~~T-FgipGV-~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh 220 (491)
T KOG2495|consen 143 CRSLTADSSDKEFVIGYDYLVIAVGAEPNT-FGIPGV-EENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLH 220 (491)
T ss_pred EeeeccCCCcceeeecccEEEEeccCCCCC-CCCCch-hhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEE
Confidence 54 44 468999999999999864 344443 23445677888888775432 11 126
Q ss_pred EEEECCChHHHHHHHHHHhC--------------CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 136 VVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~--------------g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
+||||||++|+|+|.+|... -.+||+++..+.+|+ +|+..+.++.++.+.+.||++.+++.|+.+
T Consensus 221 ~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V 299 (491)
T KOG2495|consen 221 FVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-MFDKRLVEYAENQFVRDGIDLDTGTMVKKV 299 (491)
T ss_pred EEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-HHHHHHHHHHHHHhhhccceeecccEEEee
Confidence 99999999999999998643 367999999999997 799999999999999999999999999999
Q ss_pred EecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhcCCcc---cCCCEEEcCCCCC-CCCcEEEEccccccCCc
Q 014997 202 EAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS---SVGGIQVDGQFRT-RMPGIFAIGDVAAFPLK 275 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~---~~g~i~vd~~~~t-~~~~IyA~GD~a~~~~~ 275 (414)
+.. . ..+...+| ++||+-+++|++|..|. ++.+.+.-.. ++.++.||++||. +.+||||+|||+..+..
T Consensus 300 ~~~---~-I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~ 374 (491)
T KOG2495|consen 300 TEK---T-IHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGL 374 (491)
T ss_pred cCc---E-EEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccC
Confidence 642 1 13344455 57999999999999886 4443332222 1348999999997 89999999999954332
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHh
Q 014997 276 MYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 276 ~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.++.+.|.+||.++|+++-
T Consensus 375 -------~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 375 -------KPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred -------ccHHHHHHHHHHHHHHHHH
Confidence 1266779999999999874
No 54
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.95 E-value=6.4e-27 Score=238.51 Aligned_cols=241 Identities=21% Similarity=0.305 Sum_probs=180.9
Q ss_pred CCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCC--CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---
Q 014997 36 RLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY--- 110 (414)
Q Consensus 36 ~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~--~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~--- 110 (414)
++++++...|.++.....+++++++++++.+++|+.++.. ...|.+.+|+++.||+||+|||++++. +.++|..
T Consensus 256 ~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~ 334 (517)
T PRK15317 256 NFISVPETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYR 334 (517)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhc
Confidence 3444444455555556677788899999999999999886 346778888889999999999998864 4455531
Q ss_pred CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh-CC
Q 014997 111 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NG 189 (414)
Q Consensus 111 ~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~-~g 189 (414)
..++++....+ ....++++|+|||+|++|+|+|..|+..+.+|+++++.+.+.. + ..+.+.+.+ .|
T Consensus 335 ~~~v~~~~~~~------~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~g 401 (517)
T PRK15317 335 NKGVAYCPHCD------GPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPN 401 (517)
T ss_pred CceEEEeeccC------chhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCC
Confidence 23454432211 1224689999999999999999999999999999999876532 1 344555665 69
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEeC---CC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCCCcE
Q 014997 190 VKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGI 263 (414)
Q Consensus 190 v~i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~~~I 263 (414)
|++++++.+.++..+ ++.+..+.+. +| ++++||.+++++|.+|++++++.. +..+ +|+|.||+++||++|+|
T Consensus 402 I~i~~~~~v~~i~~~-~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~I 479 (517)
T PRK15317 402 VTIITNAQTTEVTGD-GDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGV 479 (517)
T ss_pred cEEEECcEEEEEEcC-CCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCE
Confidence 999999999999853 4566566654 33 369999999999999999998776 6553 57899999999999999
Q ss_pred EEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 264 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 264 yA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
||+|||+..+.. .+..|+.+|..||.++.
T Consensus 480 yAaGDv~~~~~k---------~~~~A~~eG~~Aa~~~~ 508 (517)
T PRK15317 480 FAAGDCTTVPYK---------QIIIAMGEGAKAALSAF 508 (517)
T ss_pred EECccccCCCCC---------EEEEhhhhHHHHHHHHH
Confidence 999999986543 22336667777766654
No 55
>PRK12831 putative oxidoreductase; Provisional
Probab=99.95 E-value=2.2e-26 Score=230.98 Aligned_cols=230 Identities=22% Similarity=0.287 Sum_probs=171.6
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHH
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS 128 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~ 128 (414)
+..+++++.|+++++++.| .+.+.+++. +.+.||+||||||+ .|+. +.++|.+.+++++..++.....+..
T Consensus 196 ~~~~~~~~~gv~i~~~~~v------~~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~ 268 (464)
T PRK12831 196 KEIENIKKLGVKIETNVVV------GKTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMK 268 (464)
T ss_pred HHHHHHHHcCCEEEcCCEE------CCcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcc
Confidence 3457788899999998754 233444443 34679999999998 5764 4568888889887765544332211
Q ss_pred --------hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997 129 --------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 200 (414)
Q Consensus 129 --------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 200 (414)
....+++|+|||+|++|+|+|..|.++|.+||++.+.... .++... ..+ +.+++.||++++++.+.+
T Consensus 269 ~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~---~m~a~~-~e~-~~a~~eGV~i~~~~~~~~ 343 (464)
T PRK12831 269 AYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEE---ELPARV-EEV-HHAKEEGVIFDLLTNPVE 343 (464)
T ss_pred cccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcc---cCCCCH-HHH-HHHHHcCCEEEecccceE
Confidence 1246799999999999999999999999999999986531 122222 122 335678999999999999
Q ss_pred EEecCCCcEEEEEeC------------------CCc--EEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcCC-CC
Q 014997 201 LEAGSDGRVAAVKLE------------------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FR 257 (414)
Q Consensus 201 i~~~~~~~~~~v~~~------------------~g~--~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~~-~~ 257 (414)
+..++++++..+++. +|+ +++||.||+++|..|+..++.+ .|+..+ +|+|.||++ ++
T Consensus 344 i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~ 423 (464)
T PRK12831 344 ILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGL 423 (464)
T ss_pred EEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCc
Confidence 976556666555441 222 6999999999999999888776 677764 578999997 99
Q ss_pred CCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 258 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 258 t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
||.|+|||+|||+..+. .+..|..+|+.||.+|..
T Consensus 424 Ts~pgVfAaGD~~~g~~----------~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 424 TSKEGVFAGGDAVTGAA----------TVILAMGAGKKAAKAIDE 458 (464)
T ss_pred cCCCCEEEeCCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence 99999999999986432 456799999999998864
No 56
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-26 Score=217.54 Aligned_cols=240 Identities=25% Similarity=0.361 Sum_probs=191.9
Q ss_pred CCCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCCCCCCCCCCCC
Q 014997 33 KPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 109 (414)
Q Consensus 33 ~~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~ 109 (414)
..+++|+++. ++|.+++.+..++....++++.. ..|..++... ..|++++|+ +.+++||||||..++.+ .+++.
T Consensus 47 ~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~-~~~~e 123 (305)
T COG0492 47 DVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKL-GVPGE 123 (305)
T ss_pred eecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccCC-CCCcc
Confidence 5788899998 89999999999999999999998 6899998875 688899888 99999999999988753 33332
Q ss_pred C---CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHH
Q 014997 110 Y---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 186 (414)
Q Consensus 110 ~---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~ 186 (414)
. ..+++++-+ |+. +.++++|+|||||.+++|-|..|.+.+.+||+++|++.+-. ...+.+.++
T Consensus 124 ~e~~g~gv~yc~~---cdg----~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~ 189 (305)
T COG0492 124 EEFEGKGVSYCAT---CDG----FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLK 189 (305)
T ss_pred hhhcCCceEEeee---cCc----cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHH
Confidence 1 247777643 222 35788999999999999999999999999999999986543 223445555
Q ss_pred hC-CcEEEcCceEEEEEecCCCcEEEEEeCCC----cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCC
Q 014997 187 QN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMP 261 (414)
Q Consensus 187 ~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~ 261 (414)
+. +|++++++.+.++..+ + +..+.+.+. +.+++|-+++++|..|++++++..++..++|.|.||+.++||+|
T Consensus 190 ~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~Tsvp 266 (305)
T COG0492 190 KNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVP 266 (305)
T ss_pred hcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCC
Confidence 55 8999999999999854 2 556666653 37999999999999999999998887555789999999999999
Q ss_pred cEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 262 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 262 ~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
+|||||||+..+.+ ++..|..+|..||.++.
T Consensus 267 GifAaGDv~~~~~r---------qi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 267 GIFAAGDVADKNGR---------QIATAAGDGAIAALSAE 297 (305)
T ss_pred CEEEeEeeccCccc---------EEeehhhhHHHHHHHHH
Confidence 99999999987653 23345666666666554
No 57
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.94 E-value=5.6e-25 Score=225.67 Aligned_cols=237 Identities=20% Similarity=0.289 Sum_probs=169.4
Q ss_pred CCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCC---CC
Q 014997 38 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LP 112 (414)
Q Consensus 38 ~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~---~~ 112 (414)
|++....|.++.....+++++.+++++. ++|+.++++.+ .|.+.+| .+.||+||||||++++. |.++|.+ ..
T Consensus 52 pg~~~~~~~~l~~~l~~~~~~~gv~~~~-~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~ 128 (555)
T TIGR03143 52 PGILNTTGPELMQEMRQQAQDFGVKFLQ-AEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGR 128 (555)
T ss_pred CCCcCCCHHHHHHHHHHHHHHcCCEEec-cEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCc
Confidence 3333333333334445667788999874 68999998663 5666666 58999999999999875 4456632 34
Q ss_pred CEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997 113 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 192 (414)
Q Consensus 113 gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i 192 (414)
+++++..... ....+++++|||||++|+|+|..|+++|.+|+++++.+++.. .... ..+.+++.||++
T Consensus 129 ~v~~~~~~~~------~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i 196 (555)
T TIGR03143 129 GVAYCATCDG------EFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEV 196 (555)
T ss_pred eEEEEeecCh------hhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEE
Confidence 5555432221 234689999999999999999999999999999999886532 2222 233345579999
Q ss_pred EcCceEEEEEecCCCcEEEEE---eCCCcE----EecCE----EEEccCCcCCChhhhhcCCccc-CCCEEEcCCCCCCC
Q 014997 193 VKGASIKNLEAGSDGRVAAVK---LEDGST----IDADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRM 260 (414)
Q Consensus 193 ~~~~~v~~i~~~~~~~~~~v~---~~~g~~----i~~D~----vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~~~t~~ 260 (414)
++++.|+++.. ++.+..+. ..+|+. ++||. |++++|++|++.+++. ++..+ +|+|.||++++|+.
T Consensus 197 ~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~ 273 (555)
T TIGR03143 197 KFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNV 273 (555)
T ss_pred EeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCC
Confidence 99999999974 33333333 345653 23676 9999999999988765 45554 57899999999999
Q ss_pred CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
|+|||+|||+.... ..+..|..+|+.||.+|.
T Consensus 274 p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 274 PGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE 305 (555)
T ss_pred CCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence 99999999975221 134568888888888874
No 58
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=8.9e-25 Score=212.64 Aligned_cols=230 Identities=25% Similarity=0.298 Sum_probs=164.3
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeC----CC-----CEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHH
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA 121 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~----~~-----~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~ 121 (414)
..+.+.+.+++++.++.|..++. .. +.+..+ +..+.||+||||||+. ++ .|.++|.+.+++++.. +
T Consensus 74 ~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~ 149 (352)
T PRK12770 74 GVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--E 149 (352)
T ss_pred HHHHHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--H
Confidence 34566777999999877765433 01 111222 2247999999999995 54 4556776677776532 2
Q ss_pred HHHHHHHh-----------hcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCC
Q 014997 122 DADALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 189 (414)
Q Consensus 122 ~~~~~~~~-----------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g 189 (414)
....+... ...+++++|||+|++|+|+|..|..+|.+ |+++++.+.... + ......+.++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~g 224 (352)
T PRK12770 150 YLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARG 224 (352)
T ss_pred HHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcC
Confidence 22222110 11368999999999999999999999987 999988754211 1 1133445688999
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEe--------------------CCCcEEecCEEEEccCCcCCChhhhh-cCCccc-C
Q 014997 190 VKFVKGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-V 247 (414)
Q Consensus 190 v~i~~~~~v~~i~~~~~~~~~~v~~--------------------~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~ 247 (414)
|++++++.+.+++.. +.+..+.+ .+++.++||.+|+++|++|+..+..+ .|+..+ +
T Consensus 225 i~i~~~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~ 302 (352)
T PRK12770 225 VEFLELVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRK 302 (352)
T ss_pred CEEeeccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCC
Confidence 999999999998743 33333332 12357999999999999999877766 777654 4
Q ss_pred CCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 248 g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
++|.||++++|+.|+|||+|||+..+. .+..|+.+|..+|.+|..
T Consensus 303 g~i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 303 GEIVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred CcEeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999987432 456799999999998864
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.93 E-value=7e-25 Score=220.55 Aligned_cols=228 Identities=25% Similarity=0.318 Sum_probs=163.8
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH---
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--- 127 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~--- 127 (414)
+..+++++.|+++++++.+ .+.+.+++.. +.||+||||||+...+.+.++|.+.+++++...+.......
T Consensus 195 ~~~~~l~~~gv~~~~~~~v------~~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~ 267 (457)
T PRK11749 195 REVERLLKLGVEIRTNTEV------GRDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD 267 (457)
T ss_pred HHHHHHHHcCCEEEeCCEE------CCccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc
Confidence 3456788899999998654 2234444333 78999999999963233455776677777653322222110
Q ss_pred HhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997 128 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205 (414)
Q Consensus 128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 205 (414)
..+..+++|+|||+|.+|+|+|..|.++|. +|+++++.+. .++. .. ...+.+++.||++++++.+.++..++
T Consensus 268 ~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~~----~~~~~~~~~GV~i~~~~~v~~i~~~~ 341 (457)
T PRK11749 268 YDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--SE----EEVEHAKEEGVEFEWLAAPVEILGDE 341 (457)
T ss_pred ccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--CH----HHHHHHHHCCCEEEecCCcEEEEecC
Confidence 112368999999999999999999999997 8999998654 2321 11 22456788999999999999997543
Q ss_pred CCcEEEEEe-------------------CCCcEEecCEEEEccCCcCCChhhh-hcCCccc-CCCEEEcC-CCCCCCCcE
Q 014997 206 DGRVAAVKL-------------------EDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGI 263 (414)
Q Consensus 206 ~~~~~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~-~g~i~vd~-~~~t~~~~I 263 (414)
+ .+..|.+ .++++++||.||+++|.+|+..++. ..++..+ +|+|.||+ +++|+.|+|
T Consensus 342 ~-~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~V 420 (457)
T PRK11749 342 G-RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGV 420 (457)
T ss_pred C-ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCE
Confidence 3 2223332 1234799999999999999977654 4566553 57899998 899999999
Q ss_pred EEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 264 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 264 yA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
||+|||+..+. .+..|..+|+.||.+|..
T Consensus 421 fA~GD~~~~~~----------~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 421 FAGGDIVTGAA----------TVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred EEeCCcCCCch----------HHHHHHHHHHHHHHHHHH
Confidence 99999985321 466799999999998874
No 60
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.93 E-value=9.3e-25 Score=231.78 Aligned_cols=230 Identities=23% Similarity=0.309 Sum_probs=171.7
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHHH-
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS- 128 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~- 128 (414)
+..+++++.||+++.++.+ .+.|++++.....||+||||||+. ++. +.++|.+.+++++..++.....+..
T Consensus 486 ~~~~~l~~~gv~~~~~~~v------~~~v~~~~l~~~~ydavvlAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~ 558 (752)
T PRK12778 486 VEIENLKKLGVKFETDVIV------GKTITIEELEEEGFKGIFIASGAGLPNF-MNIPGENSNGVMSSNEYLTRVNLMDA 558 (752)
T ss_pred HHHHHHHHCCCEEECCCEE------CCcCCHHHHhhcCCCEEEEeCCCCCCCC-CCCCCCCCCCcEEHHHHHHHHhhccc
Confidence 3456788899999998544 345556555557899999999994 654 4568888889887665544322211
Q ss_pred -------hhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997 129 -------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKN 200 (414)
Q Consensus 129 -------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 200 (414)
....+++|+|||||++|+|+|..+.++|.+ ||++++++.. .++.... .+ +.+++.||++++++.+.+
T Consensus 559 ~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~---~~~~~~~-e~-~~~~~~GV~i~~~~~~~~ 633 (752)
T PRK12778 559 ASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEE---EMPARLE-EV-KHAKEEGIEFLTLHNPIE 633 (752)
T ss_pred ccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcc---cCCCCHH-HH-HHHHHcCCEEEecCcceE
Confidence 123579999999999999999999999987 9999987641 1121211 12 346788999999999999
Q ss_pred EEecCCCcEEEEEeC---------CC-----------cEEecCEEEEccCCcCCChhhhhc-CCccc-CCCEEEcCCCCC
Q 014997 201 LEAGSDGRVAAVKLE---------DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRT 258 (414)
Q Consensus 201 i~~~~~~~~~~v~~~---------~g-----------~~i~~D~vi~a~G~~p~~~~l~~~-gl~~~-~g~i~vd~~~~t 258 (414)
+..++++++..+++. +| ++++||.||+|+|.+|+..++... ++..+ +|+|.||++++|
T Consensus 634 i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T 713 (752)
T PRK12778 634 YLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS 713 (752)
T ss_pred EEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCC
Confidence 976556766655541 22 259999999999999998766553 67664 578999999999
Q ss_pred CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 259 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 259 ~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+.|+|||+|||+..+. .+..|..+|+.||.+|..
T Consensus 714 s~~gVfA~GD~~~g~~----------~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 714 SIPGIYAGGDIVRGGA----------TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCEEEeCCccCCcH----------HHHHHHHHHHHHHHHHHH
Confidence 9999999999986432 455799999999999864
No 61
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.92 E-value=5.1e-24 Score=222.06 Aligned_cols=228 Identities=25% Similarity=0.333 Sum_probs=161.2
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhc
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 131 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~ 131 (414)
..+++.+.|+++++++.+ +++ +.+++.. ..||+||||||+++...+.++|.+.++++...++...........
T Consensus 249 ~~~~l~~~Gv~i~~~~~v-~~d-----v~~~~~~-~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~ 321 (652)
T PRK12814 249 DIAPLRAMGAEFRFNTVF-GRD-----ITLEELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALH 321 (652)
T ss_pred HHHHHHHcCCEEEeCCcc-cCc-----cCHHHHH-hhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCccc
Confidence 356778899999997643 222 2222222 359999999999864344567777778765422221111111234
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc-
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR- 208 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~- 208 (414)
.+++|+|||+|++|+|+|..+.++|. +|+++.+.++ .++. .+ ..+.+. .+.||+|+++..+.++...+++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~----~ei~~a-~~eGV~i~~~~~~~~i~~~~~~~~ 395 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NR----AEIEEA-LAEGVSLRELAAPVSIERSEGGLE 395 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CH----HHHHHH-HHcCCcEEeccCcEEEEecCCeEE
Confidence 68999999999999999999999986 5999998764 3332 12 223333 46799999999998887543221
Q ss_pred EEEEEeC---------------CCc--EEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcC-CCCCCCCcEEEEccc
Q 014997 209 VAAVKLE---------------DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDV 269 (414)
Q Consensus 209 ~~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~-~~~t~~~~IyA~GD~ 269 (414)
+..+.+. +|+ .+++|.||+++|..|+.++++..++..+ +|+|.||+ +++|+.|+|||+|||
T Consensus 396 v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv 475 (652)
T PRK12814 396 LTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDC 475 (652)
T ss_pred EEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCc
Confidence 2222221 222 6999999999999999999888888765 57899997 688999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+..+. .+..|..+|+.||.+|..
T Consensus 476 ~~g~~----------~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 476 VTGAD----------IAINAVEQGKRAAHAIDL 498 (652)
T ss_pred CCCch----------HHHHHHHHHHHHHHHHHH
Confidence 86532 456799999999988864
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.92 E-value=2.8e-23 Score=222.42 Aligned_cols=230 Identities=20% Similarity=0.255 Sum_probs=168.2
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHHHh
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS 129 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~ 129 (414)
+..+++++.||+++++..+ ++.+++++.....||+||||||+. |+ .+.++|.+.+|+++..++.........
T Consensus 361 ~~i~~l~~~Gv~f~~n~~v------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~ 433 (944)
T PRK12779 361 DVVEKIKLLGGRFVKNFVV------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRG 433 (944)
T ss_pred HHHHHHHhhcCeEEEeEEe------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhcc
Confidence 4456788899999987543 456777776667899999999995 65 455688888999887655543322111
Q ss_pred ----------hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997 130 ----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 130 ----------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 199 (414)
...+++|+|||||.+|+++|..+.++|.+|+++.+++.. .++ .....+.. ..+.||+++.+..++
T Consensus 434 ~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~---~mp-a~~~e~~~-a~eeGV~~~~~~~p~ 508 (944)
T PRK12779 434 LDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS---EMP-ARVEELHH-ALEEGINLAVLRAPR 508 (944)
T ss_pred ccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc---ccc-ccHHHHHH-HHHCCCEEEeCcceE
Confidence 125799999999999999999999999999999987531 122 12223333 346799999999999
Q ss_pred EEEecC-CCcEEEEEe---------C--------CC--cEEecCEEEEccCCcCCChhhh-hcCCccc-CCCEEEcC-CC
Q 014997 200 NLEAGS-DGRVAAVKL---------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QF 256 (414)
Q Consensus 200 ~i~~~~-~~~~~~v~~---------~--------~g--~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~-~g~i~vd~-~~ 256 (414)
+|..++ ++.+..+.+ . +| .+++||.||+|+|..|+..+.. ..+++.+ +|.|.||+ .+
T Consensus 509 ~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~ 588 (944)
T PRK12779 509 EFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQ 588 (944)
T ss_pred EEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCC
Confidence 997543 234544332 1 22 3699999999999999865432 2467654 57899997 58
Q ss_pred CCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 257 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 257 ~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+|+.|+|||+|||+..+. .+..|+.+|+.||.+|..
T Consensus 589 ~Ts~pgVFAaGD~~~G~~----------~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 589 RTSIKGVYSGGDAARGGS----------TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred ccCCCCEEEEEcCCCChH----------HHHHHHHHHHHHHHHHHH
Confidence 999999999999987432 355699999999999975
No 63
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.91 E-value=2.6e-23 Score=209.84 Aligned_cols=234 Identities=21% Similarity=0.322 Sum_probs=160.7
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHH-HHHHHH-
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI- 127 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~-~~~~~~- 127 (414)
+..+++++.||++++++.|. .+... +.....||+||+|||+. ++. +.++|.+.+|+++...+. +.....
T Consensus 198 ~~~~~~~~~Gv~~~~~~~v~-~~~~~------~~~~~~~d~VilAtGa~~~~~-l~i~G~~~~gV~~~~~~l~~~~~~~~ 269 (485)
T TIGR01317 198 RRIDLLSAEGIDFVTNTEIG-VDISA------DELKEQFDAVVLAGGATKPRD-LPIPGRELKGIHYAMEFLPSATKALL 269 (485)
T ss_pred HHHHHHHhCCCEEECCCEeC-CccCH------HHHHhhCCEEEEccCCCCCCc-CCCCCcCCCCcEeHHHHHHHHhhhhc
Confidence 34578888999999987663 22111 11236899999999998 554 456888888998764322 111111
Q ss_pred --------HhhcCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccccC----H------HHHHHHHHHHHhC
Q 014997 128 --------SSLEKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQN 188 (414)
Q Consensus 128 --------~~~~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~~~----~------~~~~~~~~~l~~~ 188 (414)
.....+++|+|||+|++|+|+|..+.++| .+|+++++.++++..... + +.....++..+..
T Consensus 270 ~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~ 349 (485)
T TIGR01317 270 GKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHY 349 (485)
T ss_pred cccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhc
Confidence 11136799999999999999988887776 579999988765432111 0 1122233333445
Q ss_pred CcEE-EcCceEEEEEecCCCcEEEEEe--------CCC-----------cEEecCEEEEccCCc-CCChhhhhcCCccc-
Q 014997 189 GVKF-VKGASIKNLEAGSDGRVAAVKL--------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS- 246 (414)
Q Consensus 189 gv~i-~~~~~v~~i~~~~~~~~~~v~~--------~~g-----------~~i~~D~vi~a~G~~-p~~~~l~~~gl~~~- 246 (414)
|+.+ +++..+.+|..++++.+..+.+ ++| ++++||.||+++|.. |++.+++..++..+
T Consensus 350 gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~ 429 (485)
T TIGR01317 350 GRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTR 429 (485)
T ss_pred CccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCC
Confidence 7654 4577788886544466655542 133 269999999999996 88888888888754
Q ss_pred CCCEEE-cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~v-d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+|.+.+ |++++|+.|+|||+|||+..+. ....|..+|+.||.+|..
T Consensus 430 ~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~----------~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 430 RGNISAGYDDYSTSIPGVFAAGDCRRGQS----------LIVWAINEGRKAAAAVDR 476 (485)
T ss_pred CCCEEecCCCceECCCCEEEeeccCCCcH----------HHHHHHHHHHHHHHHHHH
Confidence 567754 5789999999999999986432 345589999999988864
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.91 E-value=4.3e-23 Score=207.51 Aligned_cols=229 Identities=23% Similarity=0.292 Sum_probs=166.3
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHH--HHHHH
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS 128 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~ 128 (414)
+..+++++.|++++++++|.. .+.+++ ....||+||+|||+.+...+.++|.+.+|+++..++... ..+..
T Consensus 196 ~~~~~~~~~Gv~~~~~~~v~~------~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~ 268 (467)
T TIGR01318 196 RRREIFTAMGIEFHLNCEVGR------DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMG 268 (467)
T ss_pred HHHHHHHHCCCEEECCCEeCC------ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcC
Confidence 345778899999999876621 122222 125799999999998754445678888898875432211 11110
Q ss_pred h---------hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 129 S---------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 129 ~---------~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
. ...+++++|||+|++|+++|..+.++|. +||++++.+.. ++. .+. . .+.+++.||++++++.
T Consensus 269 ~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~----e-~~~~~~~GV~~~~~~~ 342 (467)
T TIGR01318 269 LPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR----E-VANAREEGVEFLFNVQ 342 (467)
T ss_pred CCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH----H-HHHHHhcCCEEEecCC
Confidence 0 1247899999999999999999999995 79999987653 331 222 2 2346788999999999
Q ss_pred EEEEEecCCCcEEEEEeC---------C-----------CcEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEc--
Q 014997 198 IKNLEAGSDGRVAAVKLE---------D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-- 253 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~---------~-----------g~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd-- 253 (414)
+.++..++++++..+++. + .++++||.||+++|++|+. .+++..++..+ +|+|.||
T Consensus 343 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~ 422 (467)
T TIGR01318 343 PVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDV 422 (467)
T ss_pred cEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCc
Confidence 999976555666555431 1 2369999999999999984 56777777765 5789999
Q ss_pred --CCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 254 --GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 254 --~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.+++|+.|+|||+|||+..+. .+..|..+|+.||.+|..
T Consensus 423 ~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 423 SYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred cccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence 678999999999999987432 355799999999999864
No 65
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.91 E-value=3.1e-23 Score=209.09 Aligned_cols=233 Identities=23% Similarity=0.286 Sum_probs=163.1
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHH--HHHH-
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS- 128 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~--~~~~- 128 (414)
..+++.+.|+++++++.+. .+... +.....||+||||||+.....+.++|.+.+|+++..++.... .+..
T Consensus 199 ~~~~~~~~gv~~~~~~~v~-~~~~~------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~ 271 (471)
T PRK12810 199 RIELMEAEGIEFRTNVEVG-KDITA------EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGD 271 (471)
T ss_pred HHHHHHhCCcEEEeCCEEC-CcCCH------HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccc
Confidence 4567888999999986552 22111 111358999999999973233456787788888753322111 0111
Q ss_pred -----hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccccccCH----HH-HHHHHHHHHhCCcEEEcCce
Q 014997 129 -----SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 129 -----~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~----~~-~~~~~~~l~~~gv~i~~~~~ 197 (414)
....+++|+|||+|++|+|+|..+.++|. +|++++..+.+.....+. .. .....+.+++.||++++++.
T Consensus 272 ~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~ 351 (471)
T PRK12810 272 ETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQ 351 (471)
T ss_pred cccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccC
Confidence 12357999999999999999998888885 788766554332211110 00 11134556788999999999
Q ss_pred EEEEEecCCCcEEEEEe-----CCC---------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEc-CCCCCCC
Q 014997 198 IKNLEAGSDGRVAAVKL-----EDG---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRM 260 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~-----~~g---------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd-~~~~t~~ 260 (414)
++++.. +++++..|++ .+| +++++|.||+++|.+|+. .++++.++..+ +|.+.+| ++++|+.
T Consensus 352 ~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~ 430 (471)
T PRK12810 352 TKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSN 430 (471)
T ss_pred ceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCC
Confidence 999974 3566655543 222 479999999999999985 47888888765 5789998 7999999
Q ss_pred CcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 261 PGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 261 ~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
|+|||+|||+..+. .+..|..+|+.||.+|..
T Consensus 431 ~gVfa~GD~~~g~~----------~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 431 PKVFAAGDMRRGQS----------LVVWAIAEGRQAARAIDA 462 (471)
T ss_pred CCEEEccccCCCch----------hHHHHHHHHHHHHHHHHH
Confidence 99999999987322 355699999999998864
No 66
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.91 E-value=4.9e-23 Score=222.39 Aligned_cols=231 Identities=18% Similarity=0.279 Sum_probs=165.1
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCc-EEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALI 127 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~-~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~~~~ 127 (414)
.+..+++++.||++++++.+ + +.+++++-. ...||+||||||+. ++ .+.++|.+.+++++..++.....+.
T Consensus 484 ~~~~~~l~~~Gv~~~~~~~v-g-----~~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~ 556 (1006)
T PRK12775 484 DREVQRLVDIGVKIETNKVI-G-----KTFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLM 556 (1006)
T ss_pred HHHHHHHHHCCCEEEeCCcc-C-----CccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhc
Confidence 45567889999999998543 2 223322211 24699999999995 55 4557888888988765554433321
Q ss_pred H---------hhcCCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 128 S---------SLEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 128 ~---------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
. ....+++|+|||||++|+++|..+.++|.+ |+++.+....- ++... .. .+.+++.||++++++.
T Consensus 557 ~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~-~e-~~~a~eeGI~~~~~~~ 631 (1006)
T PRK12775 557 GGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAE---APARI-EE-IRHAKEEGIDFFFLHS 631 (1006)
T ss_pred CccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCccc---CCCCH-HH-HHHHHhCCCEEEecCC
Confidence 1 123689999999999999999999999975 78887654321 11111 11 2456788999999999
Q ss_pred EEEEEecCCCcEEEEEeC-----------------CC--cEEecCEEEEccCCcCCChhhhh-cCCccc-CCCEEEcC--
Q 014997 198 IKNLEAGSDGRVAAVKLE-----------------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-- 254 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~-----------------~g--~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~-~g~i~vd~-- 254 (414)
+.++..+++|++..+.+. +| .+++||.||+++|..|+..++.. .++..+ +|.|.+|+
T Consensus 632 p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~ 711 (1006)
T PRK12775 632 PVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGK 711 (1006)
T ss_pred cEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCc
Confidence 999976566776655431 12 26999999999999999877654 366654 57799996
Q ss_pred ---CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 255 ---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 255 ---~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+++||.|+|||+|||+..+. .+..|+.+|+.||.+|..
T Consensus 712 v~~~~~Ts~pgVFAaGDv~~G~~----------~vv~Ai~~Gr~AA~~I~~ 752 (1006)
T PRK12775 712 LESTQSTNLPGVFAGGDIVTGGA----------TVILAMGAGRRAARSIAT 752 (1006)
T ss_pred cccCcCCCCCCEEEecCcCCCcc----------HHHHHHHHHHHHHHHHHH
Confidence 78999999999999986432 455688888888888753
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.90 E-value=2e-22 Score=210.78 Aligned_cols=229 Identities=21% Similarity=0.286 Sum_probs=164.3
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHH--HHHHHHH
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALIS 128 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~--~~~~~~~ 128 (414)
+..+++++.|+++++++.|. ..+.+++. ...||+|++|||+.....+.+++.+.+|++....+. .......
T Consensus 382 ~~~~~~~~~Gv~~~~~~~v~------~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~ 454 (654)
T PRK12769 382 RRREIFSAMGIEFELNCEVG------KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMG 454 (654)
T ss_pred HHHHHHHHCCeEEECCCEeC------CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhcc
Confidence 34677888999999987652 11222111 247999999999975433455777788887542211 1111110
Q ss_pred h---------hcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 129 S---------LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 129 ~---------~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
. ...+++|+|||||++|+++|..+.++|. +|+++.+.+.. ++ ..+ ...+.+++.||+++++..
T Consensus 455 ~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~-~~~-----~e~~~~~~~Gv~~~~~~~ 528 (654)
T PRK12769 455 LEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMP-GSK-----KEVKNAREEGANFEFNVQ 528 (654)
T ss_pred CccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCC-CCH-----HHHHHHHHcCCeEEeccC
Confidence 0 1257899999999999999999999986 69999987653 32 111 223457889999999999
Q ss_pred EEEEEecCCCcEEEEEe---------CCC-----------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEcC-
Q 014997 198 IKNLEAGSDGRVAAVKL---------EDG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG- 254 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~---------~~g-----------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd~- 254 (414)
++++..++++++..|++ .+| .++++|.||+++|+.|+. .++++.++..+ +|.|.||+
T Consensus 529 ~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~ 608 (654)
T PRK12769 529 PVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVE 608 (654)
T ss_pred cEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCC
Confidence 99997555676655554 122 269999999999999985 56778888775 57799985
Q ss_pred ---CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 255 ---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 255 ---~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+++|+.|+|||+||++..+. .+..|+.+|+.||.+|..
T Consensus 609 ~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 609 SQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred cccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence 48999999999999987543 456799999999999874
No 68
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.90 E-value=2.2e-22 Score=213.75 Aligned_cols=223 Identities=24% Similarity=0.296 Sum_probs=156.3
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH--
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS-- 128 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~-- 128 (414)
+..+++.+.||+++++... .+.+++.+...||+||||||+++...+.++|.. +++.. .++....+..
T Consensus 592 ~~ie~l~~~GVe~~~g~~~--------d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~--avefL~~~~~~~ 660 (1012)
T TIGR03315 592 KDIELVKFHGVEFKYGCSP--------DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLK--SLEFLRAFKEGP 660 (1012)
T ss_pred HHHHHHHhcCcEEEEeccc--------ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceee--HHHHHHHhhccc
Confidence 4456778889999987321 122333345679999999999854433444432 33332 2333333221
Q ss_pred -hhcCCCeEEEECCChHHHHHHHHHHhC-CC-cEEEEeeCCc-ccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997 129 -SLEKAKKVVVVGGGYIGMEVAAAAVGW-KL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204 (414)
Q Consensus 129 -~~~~~~~vvVvGgG~~g~e~A~~l~~~-g~-~Vtlv~~~~~-~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 204 (414)
....+++|+|||||++|+|+|..+.+. |. +|+++.+..+ .++. ..+ .+.+. .+.||+++++..+.++. +
T Consensus 661 ~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~~e----El~~a-leeGVe~~~~~~p~~I~-~ 733 (1012)
T TIGR03315 661 TINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-SRE----ELEEA-LEDGVDFKELLSPESFE-D 733 (1012)
T ss_pred cccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-CHH----HHHHH-HHcCCEEEeCCceEEEE-C
Confidence 234689999999999999999998876 74 7999998763 3331 222 33333 35799999988888876 1
Q ss_pred CCCcEEEE--------------EeCCC--cEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEcCC-CCCCCCcEEEE
Q 014997 205 SDGRVAAV--------------KLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAI 266 (414)
Q Consensus 205 ~~~~~~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd~~-~~t~~~~IyA~ 266 (414)
+.+... ...+| .+++||.||+|+|.+|+.+++++.++..+ +|+|.||++ ++|+.|+|||+
T Consensus 734 --g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAa 811 (1012)
T TIGR03315 734 --GTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVI 811 (1012)
T ss_pred --CeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEE
Confidence 222111 11123 36999999999999999999988888764 578999986 89999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997 267 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 303 (414)
Q Consensus 267 GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~ 303 (414)
|||+..+. .+..|+.+|+.||.+|++.
T Consensus 812 GD~a~GP~----------tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 812 GDANRGPA----------TIVEAIADGRKAANAILSR 838 (1012)
T ss_pred eCcCCCcc----------HHHHHHHHHHHHHHHHhcc
Confidence 99986543 4667999999999999864
No 69
>PRK13984 putative oxidoreductase; Provisional
Probab=99.90 E-value=4.1e-22 Score=207.15 Aligned_cols=227 Identities=20% Similarity=0.269 Sum_probs=157.1
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 130 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 130 (414)
+..+++++.|++++.++.|.. + +.+++ ....||+||||||+.+.+.+.++|.+.++++.. .+....+...+
T Consensus 338 ~~~~~~~~~gv~~~~~~~v~~-~-----~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~ 408 (604)
T PRK13984 338 KDIAFIEALGVKIHLNTRVGK-D-----IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYL 408 (604)
T ss_pred HHHHHHHHCCcEEECCCEeCC-c-----CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhh
Confidence 345788899999999876631 1 11211 135899999999997433455677777777653 23233332221
Q ss_pred -------cCCCeEEEECCChHHHHHHHHHHhCCC------cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 131 -------EKAKKVVVVGGGYIGMEVAAAAVGWKL------DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 131 -------~~~~~vvVvGgG~~g~e~A~~l~~~g~------~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
..+++|+|||||++|+|+|..|.+++. +|+++.... ... .++.... .+.+ +.+.||+++++..
T Consensus 409 ~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r-~~~-~~~~~~~-e~~~-~~~~GV~i~~~~~ 484 (604)
T PRK13984 409 RGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER-TFE-EMPADME-EIEE-GLEEGVVIYPGWG 484 (604)
T ss_pred ccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc-Ccc-cCCCCHH-HHHH-HHHcCCEEEeCCC
Confidence 236899999999999999999998753 688764321 111 1222222 2333 3467999999998
Q ss_pred EEEEEecCCCcEEEEEeC-------------------CCcEEecCEEEEccCCcCCChhhhh---cCCcccCCCEEEcCC
Q 014997 198 IKNLEAGSDGRVAAVKLE-------------------DGSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQ 255 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~-------------------~g~~i~~D~vi~a~G~~p~~~~l~~---~gl~~~~g~i~vd~~ 255 (414)
+.++.. +++.+..+++. +++++++|.||+++|++|+++++.. .++..++|+|.||++
T Consensus 485 ~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~ 563 (604)
T PRK13984 485 PMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEY 563 (604)
T ss_pred CEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCC
Confidence 888864 35555555431 1246999999999999999887753 245555678999999
Q ss_pred CCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 256 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 256 ~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
++|++|+|||+|||+..+. ...|..+|+.||.+|..
T Consensus 564 ~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGIDM 599 (604)
T ss_pred CccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHHH
Confidence 9999999999999987542 34588999999998864
No 70
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.89 E-value=7.6e-22 Score=205.67 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=162.6
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHH--HHHHH-
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS- 128 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~--~~~~~- 128 (414)
..+++++.||++++++++. +.+.+++ ....||+|++|||+.....+.+++.+.+|+++...+... ..+..
T Consensus 366 ~~~~~~~~Gv~~~~~~~v~------~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~ 438 (639)
T PRK12809 366 RREIFTAMGIDFHLNCEIG------RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGL 438 (639)
T ss_pred HHHHHHHCCeEEEcCCccC------CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccC
Confidence 4577889999999987662 1222222 235799999999997544445677777888763222111 11110
Q ss_pred --------hhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997 129 --------SLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASI 198 (414)
Q Consensus 129 --------~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v 198 (414)
....+++|+|+|+|.+++++|..+.++|. +||++.++++. ++. ... .+. .+++.||++++++.+
T Consensus 439 ~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~~~~~ 512 (639)
T PRK12809 439 PESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQFNVQP 512 (639)
T ss_pred ccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEeccCC
Confidence 01257899999999999999999888885 79999987654 331 112 222 356789999999999
Q ss_pred EEEEecCCCcEEEEEe---C------CC-----------cEEecCEEEEccCCcCCC-hhhhhcCCccc-CCCEEEcC--
Q 014997 199 KNLEAGSDGRVAAVKL---E------DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG-- 254 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~---~------~g-----------~~i~~D~vi~a~G~~p~~-~~l~~~gl~~~-~g~i~vd~-- 254 (414)
++|..++++++..+.+ . +| ..+++|.||+++|++|+. .++++.++..+ +|.|.||+
T Consensus 513 ~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~ 592 (639)
T PRK12809 513 QYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVG 592 (639)
T ss_pred EEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCc
Confidence 9997655666655432 1 12 369999999999999974 56777788765 57788985
Q ss_pred --CCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 255 --QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 255 --~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+++|+.|+|||+|||+..+. .+..|+.+|+.||++|..
T Consensus 593 ~~~~~Ts~~gVfA~GD~~~g~~----------~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 593 YLPTQTHLKKVFAGGDAVHGAD----------LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ccCcccCCCCEEEcCCCCCCch----------HHHHHHHHHHHHHHHHHH
Confidence 48999999999999986532 456799999999998874
No 71
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=9.5e-22 Score=179.14 Aligned_cols=208 Identities=27% Similarity=0.432 Sum_probs=160.7
Q ss_pred EEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 86 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 86 ~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.++++++|||||.+|+ .|.+||.. .+.-+ ++++......+.+.+|||+|++++|||..|+..|.+||+..|+
T Consensus 159 ~~ta~~fvIatG~RPr-Yp~IpG~~----Ey~IT---SDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPR-YPDIPGAK----EYGIT---SDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCC-CCCCCCce----eeeec---ccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5899999999999997 56655422 22212 3344444455677789999999999999999999999999885
Q ss_pred CcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CC--cEEecCEEEEccCCcCCChh--h
Q 014997 166 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--F 238 (414)
Q Consensus 166 ~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g--~~i~~D~vi~a~G~~p~~~~--l 238 (414)
- +-+.||.++++.+.+.++++||+|...+.+..+++.+++++ .|... .+ -+-++|.|+||+|..+.++- |
T Consensus 231 I--~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L 307 (503)
T KOG4716|consen 231 I--LLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNL 307 (503)
T ss_pred e--ecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcCC
Confidence 3 33569999999999999999999999988888887777763 22221 22 24679999999999998763 5
Q ss_pred hhcCCcc--cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCCCCc
Q 014997 239 ERVGLNS--SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPY 313 (414)
Q Consensus 239 ~~~gl~~--~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~~--~~~~~~p~ 313 (414)
.++|++. ..+.|.||+.-+|++|+|||+||+.... .|.-..|.+.|+..|+.+.++.. ..|..+|.
T Consensus 308 ~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T 377 (503)
T KOG4716|consen 308 DNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT 377 (503)
T ss_pred CccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence 6778776 3678999999999999999999998743 23455699999999999987654 34666664
No 72
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-22 Score=174.43 Aligned_cols=228 Identities=21% Similarity=0.315 Sum_probs=172.2
Q ss_pred CCCCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCCCCCCCCC
Q 014997 32 KKPARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIG 108 (414)
Q Consensus 32 ~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g 108 (414)
...+++||||. ++|.+++.+.+++..+.|.+++. ..|.++|...+ .|.++ .+.+.+|.+|+|||+..+++.. ||
T Consensus 55 T~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td-~~~v~~~avI~atGAsAkRl~~-pg 131 (322)
T KOG0404|consen 55 TDVENFPGFPDGITGPELMDKMRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTD-ARPVTADAVILATGASAKRLHL-PG 131 (322)
T ss_pred eccccCCCCCcccccHHHHHHHHHHHHhhcceeee-eehhhccccCCCeEEEec-CCceeeeeEEEecccceeeeec-CC
Confidence 45689999996 89999999999999999999998 58999998775 55554 4468999999999998887643 34
Q ss_pred CCCCCEEEecCHHHHHHHHHh--hcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHH-HHH
Q 014997 109 GYLPGVHYIRDVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLY 185 (414)
Q Consensus 109 ~~~~gv~~~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~-~~l 185 (414)
. .++.+.-+.+..|.-+... +..+|..+|||||.++||=|.+|.+.+.+|.+++|++.+-. +..++ +..
T Consensus 132 ~-ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA-------s~~Mq~ra~ 203 (322)
T KOG0404|consen 132 E-GEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA-------SKIMQQRAE 203 (322)
T ss_pred C-CcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH-------HHHHHHHHh
Confidence 2 1222333444444433332 24689999999999999999999999999999999986543 22333 445
Q ss_pred HhCCcEEEcCceEEEEEecCCCc-----EEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc-CCCEEEc-CCCCC
Q 014997 186 QQNGVKFVKGASIKNLEAGSDGR-----VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRT 258 (414)
Q Consensus 186 ~~~gv~i~~~~~v~~i~~~~~~~-----~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~-~g~i~vd-~~~~t 258 (414)
+.-+|+++.++.+.+...+ .+. +..+.+.+.+.++.+-+++++|..|++.+++. .++.+ +|.|++- ..-.|
T Consensus 204 ~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~T 281 (322)
T KOG0404|consen 204 KNPNIEVLYNTVAVEALGD-GKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLT 281 (322)
T ss_pred cCCCeEEEechhhhhhccC-cccccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccc
Confidence 5668999999887776533 222 23344444467999999999999999999987 55554 6788887 46779
Q ss_pred CCCcEEEEcccccc
Q 014997 259 RMPGIFAIGDVAAF 272 (414)
Q Consensus 259 ~~~~IyA~GD~a~~ 272 (414)
|+|++||+||+...
T Consensus 282 svpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 282 SVPGVFAAGDVQDK 295 (322)
T ss_pred cccceeeccccchH
Confidence 99999999999764
No 73
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.6e-22 Score=182.54 Aligned_cols=227 Identities=21% Similarity=0.310 Sum_probs=179.0
Q ss_pred CCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCC-----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCC
Q 014997 33 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKI 107 (414)
Q Consensus 33 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~-----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~ 107 (414)
.++++.+.|...|..+.....+..+++.|+++-..+++++.+. -.+|++++|-.+..+.+|||||++.+.+ .+|
T Consensus 253 ~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvP 331 (520)
T COG3634 253 GIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVP 331 (520)
T ss_pred chhheeccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCC
Confidence 3556666677777777777788889999999887888888874 2489999999999999999999997654 456
Q ss_pred CCC---CCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHH
Q 014997 108 GGY---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 184 (414)
Q Consensus 108 g~~---~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~ 184 (414)
|.+ ..|+.++. .+..-+.++|+|+|||||++|+|.|..|+..-..||+++-.+.+- ..+.+++.
T Consensus 332 GE~e~rnKGVayCP------HCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk-------AD~VLq~k 398 (520)
T COG3634 332 GEDEYRNKGVAYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK-------ADAVLQDK 398 (520)
T ss_pred chHHHhhCCeeeCC------CCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhh-------hHHHHHHH
Confidence 643 46777754 333446689999999999999999999998888899998766432 23345566
Q ss_pred HHh-CCcEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCcCCChhhhhcCCcc-cCCCEEEcCCCC
Q 014997 185 YQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFR 257 (414)
Q Consensus 185 l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~-~~g~i~vd~~~~ 257 (414)
++. .+++++++..-+++..+ ..++..+...+ | +.++-+-|++-+|..||++||+.. ++. .+|-|.||.+..
T Consensus 399 l~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~ 476 (520)
T COG3634 399 LRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGE 476 (520)
T ss_pred HhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCC
Confidence 665 48999999999999854 34455555433 3 368889999999999999999987 554 367899999999
Q ss_pred CCCCcEEEEccccccCCc
Q 014997 258 TRMPGIFAIGDVAAFPLK 275 (414)
Q Consensus 258 t~~~~IyA~GD~a~~~~~ 275 (414)
||.|+|||+|||...+..
T Consensus 477 TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 477 TNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred cCCCceeecCcccCCccc
Confidence 999999999999987664
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.86 E-value=1.4e-20 Score=187.77 Aligned_cols=233 Identities=17% Similarity=0.238 Sum_probs=152.7
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHH-------HHHH
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADAL 126 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~ 126 (414)
..+...+++++.+.++ ++.+.+++-. ..||+||||||+.+.+.+.++|.+.+|++...++.. +..+
T Consensus 87 ~~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~ 159 (491)
T PLN02852 87 RVATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHL 159 (491)
T ss_pred HHHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhh
Confidence 3456678998876443 3345554443 479999999999864345568888899988765421 1112
Q ss_pred HHhhcCCCeEEEECCChHHHHHHHHHHhC--------------------CC-cEEEEeeCCcccccccCHHH--------
Q 014997 127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL-------- 177 (414)
Q Consensus 127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~--------------------g~-~Vtlv~~~~~~l~~~~~~~~-------- 177 (414)
...+..+++|+|||+|++|+++|..|.+. +. +|+++.|+...-..+..+++
T Consensus 160 ~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~ 239 (491)
T PLN02852 160 PPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKN 239 (491)
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCC
Confidence 22234689999999999999999998765 54 59999987532111111111
Q ss_pred -----------------------------HHHHHHHHHh---------CCcEEEcCceEEEEEec--CCCcEEEEEeC--
Q 014997 178 -----------------------------AQRYEQLYQQ---------NGVKFVKGASIKNLEAG--SDGRVAAVKLE-- 215 (414)
Q Consensus 178 -----------------------------~~~~~~~l~~---------~gv~i~~~~~v~~i~~~--~~~~~~~v~~~-- 215 (414)
.+.+.+...+ ++|.|++.....+|..+ +++++..+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~ 319 (491)
T PLN02852 240 VRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERT 319 (491)
T ss_pred CceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEe
Confidence 1112222222 57999999999999743 23566666552
Q ss_pred ---------------CC--cEEecCEEEEccCCc--CCChh-hh-hcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccC
Q 014997 216 ---------------DG--STIDADTIVIGIGAK--PTVSP-FE-RVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP 273 (414)
Q Consensus 216 ---------------~g--~~i~~D~vi~a~G~~--p~~~~-l~-~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~ 273 (414)
+| +.++||.||.++|++ |...+ +. ..++.. .+|+|.+|+.++|+.|+|||+|||...+
T Consensus 320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp 399 (491)
T PLN02852 320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP 399 (491)
T ss_pred ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence 23 259999999999998 55443 32 234443 4688999988899999999999999865
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 274 LKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 274 ~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
... +..++..|..++.+|+.
T Consensus 400 ~gv---------I~t~~~dA~~ta~~i~~ 419 (491)
T PLN02852 400 TGI---------IGTNLTCAEETVASIAE 419 (491)
T ss_pred CCe---------eeecHhhHHHHHHHHHH
Confidence 532 22355566666666653
No 75
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.85 E-value=7.9e-20 Score=198.60 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=159.9
Q ss_pred CHhHHHHc-CCeEEcCCcEEEEeCCCCEEEeC----------C----C--cEEecCeEEEccCCCCCCCCCCCCCCCCCE
Q 014997 52 TPEWYKEK-GIEMIYQDPVTSIDIEKQTLITN----------S----G--KLLKYGSLIVATGCTASRFPEKIGGYLPGV 114 (414)
Q Consensus 52 ~~~~~~~~-~i~~~~~~~V~~id~~~~~V~~~----------~----g--~~~~yd~LviAtG~~~~~~~~~~g~~~~gv 114 (414)
..+.+++. +++++.+++|..++.......++ + + .++.||+||||||+.++. ++++|.+.+++
T Consensus 221 ~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV 299 (985)
T TIGR01372 221 TVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGV 299 (985)
T ss_pred HHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCc
Confidence 33445555 59999999999887643221110 1 1 158999999999999874 55688888999
Q ss_pred EEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE
Q 014997 115 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 193 (414)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~ 193 (414)
++.......... .....+++|+|||+|++|+|+|..|++.|. .|+++++.+.+. ..+.+.+++.||+++
T Consensus 300 ~~~~~~~~~l~~-~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~ 369 (985)
T TIGR01372 300 MLAGAARTYLNR-YGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVL 369 (985)
T ss_pred EEchHHHHHHHh-hCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEE
Confidence 886544332211 112368999999999999999999999995 477887665332 235567889999999
Q ss_pred cCceEEEEEecCCCcEEEEEeC----CCcEEecCEEEEccCCcCCChhhhhcCCccc--C--CCEEEcCCCCCCCCcEEE
Q 014997 194 KGASIKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFA 265 (414)
Q Consensus 194 ~~~~v~~i~~~~~~~~~~v~~~----~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~--~--g~i~vd~~~~t~~~~IyA 265 (414)
+++.++++.. ++.+..|++. ++++++||.|+++.|.+||++++..++.... . +... -.|+.|+||+
T Consensus 370 ~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVya 443 (985)
T TIGR01372 370 TGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCIL 443 (985)
T ss_pred cCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEE
Confidence 9999999974 3444455543 4568999999999999999999888775532 1 1111 1378999999
Q ss_pred EccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 266 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 266 ~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
||||+... ....|..+|..||..++
T Consensus 444 aGD~~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 444 AGAANGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred eeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence 99998643 34568888888887775
No 76
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.84 E-value=1.4e-19 Score=186.49 Aligned_cols=226 Identities=25% Similarity=0.301 Sum_probs=155.2
Q ss_pred CHhHHHHcCCeEEcCCcE-EEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhh
Q 014997 52 TPEWYKEKGIEMIYQDPV-TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 130 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V-~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~ 130 (414)
..+++++.|++++.++.+ ..+..+. + ...||++|+|||+.......+++....++...-.+..........
T Consensus 193 ~l~~~~~~Gv~~~~~~~~~~~~~~~~----~----~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~ 264 (564)
T PRK12771 193 EIQRILDLGVEVRLGVRVGEDITLEQ----L----EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPP 264 (564)
T ss_pred HHHHHHHCCCEEEeCCEECCcCCHHH----H----HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCc
Confidence 346678899999987655 2221111 1 135999999999975433344555556655432221111101112
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc-cccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 208 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~-l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~ 208 (414)
..+++++|+|+|.+++++|..+.+++ .+|+++.+.+.. ++ ... ..+. ...+.||+++++..+.++..++++.
T Consensus 265 ~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~-~~~----~~~~-~a~~~GVki~~~~~~~~i~~~~~~~ 338 (564)
T PRK12771 265 FLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMP-AHD----EEIE-EALREGVEINWLRTPVEIEGDENGA 338 (564)
T ss_pred CCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCC-CCH----HHHH-HHHHcCCEEEecCCcEEEEcCCCCE
Confidence 35789999999999999999999888 679999887642 22 111 1222 3456899999999999997554443
Q ss_pred E----EEEEe----CC-------C--cEEecCEEEEccCCcCCChhhhh-cCCcccCCCEEEcC-CCCCCCCcEEEEccc
Q 014997 209 V----AAVKL----ED-------G--STIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDV 269 (414)
Q Consensus 209 ~----~~v~~----~~-------g--~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~g~i~vd~-~~~t~~~~IyA~GD~ 269 (414)
+ ..+.+ .+ | .++++|.||+++|..|+.+++++ .++..++|+|.||+ +++|+.|+|||+|||
T Consensus 339 ~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~ 418 (564)
T PRK12771 339 TGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDM 418 (564)
T ss_pred EEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCc
Confidence 2 12222 12 2 37999999999999999888875 56765578899998 788999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 270 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 270 a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
+..+. .+..|..+|+.||.+|.
T Consensus 419 ~~g~~----------~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 419 VPGPR----------TVTTAIGHGKKAARNID 440 (564)
T ss_pred CCCch----------HHHHHHHHHHHHHHHHH
Confidence 86432 46678999999998875
No 77
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=99.82 E-value=4.4e-20 Score=167.17 Aligned_cols=272 Identities=19% Similarity=0.256 Sum_probs=189.0
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEe
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT 81 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~ 81 (414)
+.|+|.||..+.++.|+ |.++ +..+..+..+.- .+....+...+..++. ++|.+.+|++++|.+
T Consensus 63 ~~g~vgIvep~e~HyYQ-PgfT--LvGgGl~~l~~s------------rr~~a~liP~~a~wi~-ekv~~f~P~~N~v~t 126 (446)
T KOG3851|consen 63 GSGSVGIVEPAEDHYYQ-PGFT--LVGGGLKSLDSS------------RRKQASLIPKGATWIK-EKVKEFNPDKNTVVT 126 (446)
T ss_pred CCCceEEecchhhcccC-cceE--Eeccchhhhhhc------------cCcccccccCCcHHHH-HHHHhcCCCcCeEEc
Confidence 56899999999888887 8766 444432222211 3444455566777776 699999999999999
Q ss_pred CCCcEEecCeEEEccCCCCCCCCCCCC----CCCCCEEEecCHHHHHHHHHhh---cCCCeEEEECCChHHH--------
Q 014997 82 NSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALISSL---EKAKKVVVVGGGYIGM-------- 146 (414)
Q Consensus 82 ~~g~~~~yd~LviAtG~~~~~~~~~~g----~~~~gv~~~~~~~~~~~~~~~~---~~~~~vvVvGgG~~g~-------- 146 (414)
++|++|.||+||||+|...+ ...+.| .+.|+|.+..+....+.....+ ++|.-+.-.-++++-|
T Consensus 127 ~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~ 205 (446)
T KOG3851|consen 127 RGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIM 205 (446)
T ss_pred cCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhh
Confidence 99999999999999998754 344444 4568888888776666654443 4555555555555433
Q ss_pred HHHH-HHHhCCCc--EEEEeeCCcccccccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-C--cE
Q 014997 147 EVAA-AAVGWKLD--TTIIFPENHLLQRLFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-G--ST 219 (414)
Q Consensus 147 e~A~-~l~~~g~~--Vtlv~~~~~~l~~~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g--~~ 219 (414)
-++. .++++|.+ +.++..- -|+..|+ +..++.+++..++++|++.......++..++...+.. .+++ | ++
T Consensus 206 yise~y~Rk~gvRd~a~iiy~T--sl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~e 282 (446)
T KOG3851|consen 206 YISESYFRKRGVRDNANIIYNT--SLPTIFGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEE 282 (446)
T ss_pred hhhHHHHHHhCccccccEEEec--CccceecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeE
Confidence 3333 35666643 4444332 2333444 5778889999999999999988888887543221111 1222 4 47
Q ss_pred EecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC-CCCC-CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHH
Q 014997 220 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCI 297 (414)
Q Consensus 220 i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~-~~~t-~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa 297 (414)
++++++-+.+..++. +.++++.+.+..|++.||+ .+|. ..||||++|||.+.|+.. +...+..|...+-
T Consensus 283 i~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsK--------TaAAvaaq~~vv~ 353 (446)
T KOG3851|consen 283 IEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSK--------TAAAVAAQSPVVD 353 (446)
T ss_pred EeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCchh--------hHHHHHhcCchhh
Confidence 999999999999886 7888888887779999996 6775 899999999999988754 3333445666666
Q ss_pred HHHhc
Q 014997 298 KALLS 302 (414)
Q Consensus 298 ~~i~~ 302 (414)
+|+..
T Consensus 354 ~nl~~ 358 (446)
T KOG3851|consen 354 KNLTQ 358 (446)
T ss_pred hhHHH
Confidence 77653
No 78
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.73 E-value=3.3e-17 Score=144.82 Aligned_cols=200 Identities=27% Similarity=0.357 Sum_probs=146.3
Q ss_pred cEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEECCChHHHH
Q 014997 68 PVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGME 147 (414)
Q Consensus 68 ~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e 147 (414)
.|..++...+.+++++|.++.|++|++|||++|...- .+ --+.+..+|+.+.++.++..+.+.|.|.|+|.|-+++|
T Consensus 72 ~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~E 148 (334)
T KOG2755|consen 72 DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAME 148 (334)
T ss_pred hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHH
Confidence 3777888889999999999999999999999987432 22 24667778888888888888999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCC----cEE--------EcCce-----------------E
Q 014997 148 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG----VKF--------VKGAS-----------------I 198 (414)
Q Consensus 148 ~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~g----v~i--------~~~~~-----------------v 198 (414)
++..+.. .+|++....+.+...+++|.+.+.+...++..+ |.+ +++++ .
T Consensus 149 l~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl 226 (334)
T KOG2755|consen 149 LTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDL 226 (334)
T ss_pred HHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhccc
Confidence 9998864 679999999888888888888877766662111 111 11000 0
Q ss_pred EEEE-------------------ecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCChhhhhcCCcc-cCCCEEEcCCC
Q 014997 199 KNLE-------------------AGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQF 256 (414)
Q Consensus 199 ~~i~-------------------~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~-~~g~i~vd~~~ 256 (414)
..+. ..+.+.+......+| ..+.||.+++++|..||.+++-...+.. +++++.||+.|
T Consensus 227 ~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m 306 (334)
T KOG2755|consen 227 QGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAM 306 (334)
T ss_pred ccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhc
Confidence 0000 000000000000111 3688999999999999999765555543 57899999999
Q ss_pred CCCCCcEEEEcccccc
Q 014997 257 RTRMPGIFAIGDVAAF 272 (414)
Q Consensus 257 ~t~~~~IyA~GD~a~~ 272 (414)
+|+.|++||+||++..
T Consensus 307 ~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 307 ETSLPDVFAAGDVCTT 322 (334)
T ss_pred cccccceeeecceecc
Confidence 9999999999999884
No 79
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.69 E-value=3.2e-16 Score=156.82 Aligned_cols=224 Identities=17% Similarity=0.159 Sum_probs=145.4
Q ss_pred CCCCCHhHHHHcCCe--EEcCCcEEEEeCCCC--EEEeCCC--c--EEecCeEEEccC--CCCCCCCCCCCC-CCCCE-E
Q 014997 48 GERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYGSLIVATG--CTASRFPEKIGG-YLPGV-H 115 (414)
Q Consensus 48 ~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~V~~~~g--~--~~~yd~LviAtG--~~~~~~~~~~g~-~~~gv-~ 115 (414)
+.....+++++.++. ++++++|+.|++.+. .|++.++ . +..||+||+||| +.|+ .|.++|. ..+|. .
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~P~-~P~ipG~~~f~G~~i 191 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPN-VAHIPGIKSWPGKQI 191 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCCCc-CCCCCCcccCCceEE
Confidence 333455666678888 889999999998654 5665432 2 467999999999 5565 4666664 24442 1
Q ss_pred EecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997 116 YIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 195 (414)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~ 195 (414)
+..++.+.. ..++|+|+|||+|.+|+|+|..|+..+.+|+++.|...+.. . ..+......+..+
T Consensus 192 Hs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~--~---------~~~~~~~~~v~~~ 255 (461)
T PLN02172 192 HSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT--Y---------EKLPVPQNNLWMH 255 (461)
T ss_pred EecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc--c---------ccCcCCCCceEEC
Confidence 111121111 23789999999999999999999999999999998763311 0 0111122344555
Q ss_pred ceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC-CcccCCCEE-EcCC-CCCC-CCcEEEEccccc
Q 014997 196 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG-LNSSVGGIQ-VDGQ-FRTR-MPGIFAIGDVAA 271 (414)
Q Consensus 196 ~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g-l~~~~g~i~-vd~~-~~t~-~~~IyA~GD~a~ 271 (414)
..|..+.. ++ .|.+.||+.+++|.||+|||++++.++|...+ +..+++.+. .-++ +-.. .|+++.+|=+..
T Consensus 256 ~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~ 330 (461)
T PLN02172 256 SEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAM 330 (461)
T ss_pred Ccccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEecccc
Confidence 66666642 33 48899999999999999999999999886533 222222221 1111 1123 489999995422
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997 272 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 304 (414)
Q Consensus 272 ~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~~ 304 (414)
. ..+..+..||+.+|+-+.|..
T Consensus 331 ~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 331 G-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred c-----------cCchhHHHHHHHHHHHHcCCC
Confidence 1 134457789999998887643
No 80
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.59 E-value=5.3e-15 Score=146.42 Aligned_cols=236 Identities=26% Similarity=0.288 Sum_probs=158.5
Q ss_pred CCCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHH
Q 014997 49 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 128 (414)
Q Consensus 49 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~ 128 (414)
..+..+.+++.|++|++++++= +.++++.= .-.||++++|||+.-.+.-.++|.+.++++...++........
T Consensus 176 ~d~~i~~l~~~Gv~~~~~~~vG------~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~ 248 (457)
T COG0493 176 LDRRLELLERSGVEFKLNVRVG------RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEV 248 (457)
T ss_pred HHHHHHHHHHcCeEEEEcceEC------CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHH
Confidence 4566788899999999987652 22332221 2467999999998543344567877888876543332222111
Q ss_pred hh---------cCCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccccc-ccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 129 SL---------EKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 129 ~~---------~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l~~-~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
.. ..+++|+|||+|.++++|+....+.|+ +|+.+.+...--.. ..+........+...+.|+.+.+...
T Consensus 249 ~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~ 328 (457)
T COG0493 249 LGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQ 328 (457)
T ss_pred hcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCC
Confidence 11 134999999999999999999999997 67776532211000 01122334455667788999998888
Q ss_pred EEEEEecCCCcEEEEEeC-------------------CC--cEEecCEEEEccCCcCCChhh--hhcCCccc-CCCEEEc
Q 014997 198 IKNLEAGSDGRVAAVKLE-------------------DG--STIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVD 253 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~-------------------~g--~~i~~D~vi~a~G~~p~~~~l--~~~gl~~~-~g~i~vd 253 (414)
..++..+++|++..+.+. .| ..+++|+|+.++|+.++.... ...++..+ +|.+.+|
T Consensus 329 ~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~ 408 (457)
T COG0493 329 PKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD 408 (457)
T ss_pred ceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecc
Confidence 888887778877655431 12 368899999999998874432 22244443 6889999
Q ss_pred CCC-CCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 254 GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 254 ~~~-~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
+.+ +|+.|++||.||+..... .+..|..+|+.+|+.|.
T Consensus 409 ~~~~~ts~~~vfa~gD~~~g~~----------~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 409 ENLQQTSIPGVFAGGDAVRGAA----------LVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccCCCeeeCceeccchh----------hhhhHHhhchHHHHhhh
Confidence 988 899999999999988533 23347778888777664
No 81
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.55 E-value=6.6e-14 Score=105.84 Aligned_cols=80 Identities=39% Similarity=0.653 Sum_probs=74.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+++|||||++|+|+|..|+++|.+||++++.+.++ +.+++++...+.+.+++.||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~-~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL-PGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS-TTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh-hhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 68999999999999999999999999999999999 5799999999999999999999999999999988777 65 888
Q ss_pred CCC
Q 014997 215 EDG 217 (414)
Q Consensus 215 ~~g 217 (414)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 876
No 82
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.52 E-value=4.6e-14 Score=126.10 Aligned_cols=139 Identities=26% Similarity=0.418 Sum_probs=98.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--cccCH-----------HHH--H--HHHHHHHhCCcEEEcCce
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~-----------~~~--~--~~~~~l~~~gv~i~~~~~ 197 (414)
+|+|||||+.|+.+|..|++.+.+|+++++.+.... ..+.. ... . .+.+.+...+++++.+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999977653210 00100 000 0 233344678999999999
Q ss_pred EEEEEecCCC------cEEEEEeCCCcEEecCEEEEccCCcCCChh----------------------------------
Q 014997 198 IKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSP---------------------------------- 237 (414)
Q Consensus 198 v~~i~~~~~~------~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~---------------------------------- 237 (414)
+.++...... .+......++.++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~ 160 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVGT 160 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEEST
T ss_pred cccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccccccccccccccc
Confidence 9999765331 112224456678999999999998854210
Q ss_pred --h-hhcCCcc-cCCCEEEcCCCCCCCCcEEEEccccccC
Q 014997 238 --F-ERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFP 273 (414)
Q Consensus 238 --l-~~~gl~~-~~g~i~vd~~~~t~~~~IyA~GD~a~~~ 273 (414)
| +..+++. ++|++.||+++||+.|||||+|||+..+
T Consensus 161 ~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 161 EFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred cccccccccccccccccccccccccccccccccccccccC
Confidence 1 3445665 3678999999999999999999999864
No 83
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.50 E-value=1.5e-13 Score=139.47 Aligned_cols=246 Identities=22% Similarity=0.290 Sum_probs=127.8
Q ss_pred CCCCCCCccccCCCCCCCCHhHHHHcCC--eEEcCCcEEEEeCCC-------CEEEeCC-Cc--EEecCeEEEccCCCCC
Q 014997 34 PARLPGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 34 ~~~l~~~~~~~g~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~-------~~V~~~~-g~--~~~yd~LviAtG~~~~ 101 (414)
++++|.|++. .++.....+++++.++ .++++++|+++.... ..|++++ |+ +-.||+||+|||....
T Consensus 74 p~~~p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 74 PEDYPDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp CCCCSSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSC
T ss_pred CCCCCCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCC
Confidence 3444544432 2233344555666776 488999999997532 3676654 42 4579999999997532
Q ss_pred -CCCC--CCCCC-CCCE-EEecCHHHHHHHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc-cccccc--
Q 014997 102 -RFPE--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF-- 173 (414)
Q Consensus 102 -~~~~--~~g~~-~~gv-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~-~l~~~~-- 173 (414)
.+|. ++|.+ ++|- .+.+++.+. ..-++|+|+|||+|.+|+++|..|++...+|++..|... ++++..
T Consensus 152 P~~P~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~ 226 (531)
T PF00743_consen 152 PNIPEPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDN 226 (531)
T ss_dssp ESB-----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC------------
T ss_pred CCCChhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccc
Confidence 1232 34422 3342 232222221 224789999999999999999999999999998887632 222211
Q ss_pred --------------------CHHHHHHHH-HH--------------------------------HHhCCcEEEcCceEEE
Q 014997 174 --------------------TPSLAQRYE-QL--------------------------------YQQNGVKFVKGASIKN 200 (414)
Q Consensus 174 --------------------~~~~~~~~~-~~--------------------------------l~~~gv~i~~~~~v~~ 200 (414)
+..+.+.+. +. +....|++. ..|.+
T Consensus 227 G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~I~~ 304 (531)
T PF00743_consen 227 GYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PDIKR 304 (531)
T ss_dssp ------------------------------------------------------------------------E--E-EEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccc
Confidence 111111110 00 111112222 12334
Q ss_pred EEecCCCcEEEEEeCCCcEE-ecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCC---CCCCCcEEEEccccccCCcc
Q 014997 201 LEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKM 276 (414)
Q Consensus 201 i~~~~~~~~~~v~~~~g~~i-~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~---~t~~~~IyA~GD~a~~~~~~ 276 (414)
+..+ .|.+.||+++ ++|.||+|||++...++|.+.-+...++.+..-.++ ....|++..+|=+...
T Consensus 305 ~~~~------~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~---- 374 (531)
T PF00743_consen 305 FTEN------SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF---- 374 (531)
T ss_dssp E-SS------EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS----
T ss_pred cccc------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence 4321 6789999875 699999999999998888776554433333332322 1245889999965321
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhcCC
Q 014997 277 YDRTARVEHVDHARQSAQHCIKALLSAQ 304 (414)
Q Consensus 277 ~~~~~~~~~~~~A~~~a~~aa~~i~~~~ 304 (414)
|. .+..+..||+.+|+-+.|..
T Consensus 375 -g~-----~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 375 -GS-----IFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp -S------HHHHHHHHHHHHHHHHTTSS
T ss_pred -cc-----cccccccccccccccccccc
Confidence 11 34457889999998887643
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.43 E-value=6.9e-12 Score=132.12 Aligned_cols=182 Identities=15% Similarity=0.129 Sum_probs=115.8
Q ss_pred EEecCeEEEccCC-CCCCCCCCCCCCCCCEEEecCHHHHHHHHHh--------hcCCCeEEEECCChHHHHHHHHHHh--
Q 014997 86 LLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG-- 154 (414)
Q Consensus 86 ~~~yd~LviAtG~-~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~--------~~~~~~vvVvGgG~~g~e~A~~l~~-- 154 (414)
...||+|+||||+ .++. +.++|.+.+++++..++......... +..+++|+|||||++|+|+|.....
T Consensus 495 ~~gyDAV~IATGA~kpr~-L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~ 573 (1028)
T PRK06567 495 DLGFDHIAFCIGAGQPKV-LDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYY 573 (1028)
T ss_pred hcCCCEEEEeCCCCCCCC-CCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhc
Confidence 4679999999999 5764 55688777888875443222111110 1236899999999999999984332
Q ss_pred -------------------------------------------------CCCcEEEEeeCCcccccccCHHHHHHHHHHH
Q 014997 155 -------------------------------------------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 185 (414)
Q Consensus 155 -------------------------------------------------~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l 185 (414)
.|. |+++.|...--.... +.-.+.+.. .
T Consensus 574 ~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~-~~~~eEv~~-A 650 (1028)
T PRK06567 574 KKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAY-KLNHEELIY-A 650 (1028)
T ss_pred cchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCC-CCCHHHHHH-H
Confidence 222 888887653211111 001223333 4
Q ss_pred HhCCcEEEcCceEEEEEecCCCcEEEEEeC--------------C----------------CcEEecCEEEEccCCcCCC
Q 014997 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLE--------------D----------------GSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~--------------~----------------g~~i~~D~vi~a~G~~p~~ 235 (414)
.+.||+|+.+....++..+++|++..+++. + ..+++||.||+|+|..||+
T Consensus 651 ~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~ 730 (1028)
T PRK06567 651 LALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNT 730 (1028)
T ss_pred HHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcc
Confidence 567999999999999986666777655442 1 1469999999999999997
Q ss_pred hhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 236 SPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 236 ~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.+.. .+..+-++.+++|+- ++-.|+.+|+.++.+|.
T Consensus 731 ~~~~------------~~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 731 QFDE------------DKYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred cccc------------cccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence 6630 011222344555543 33457778888777773
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.38 E-value=1.7e-12 Score=134.03 Aligned_cols=233 Identities=21% Similarity=0.328 Sum_probs=136.3
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCC-CCCCCCCCCCCCCCEEEecCHHHHH--HH
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD--AL 126 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~-~~~~~~~~g~~~~gv~~~~~~~~~~--~~ 126 (414)
.|..+.+.+.||+|+.++++ ++.|.+ |+-.-.+|.+|+|||+. |+.+| ++|.+..|++....+.+.. .+
T Consensus 1839 ~rrv~ll~~egi~f~tn~ei------gk~vs~-d~l~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~l 1910 (2142)
T KOG0399|consen 1839 QRRVDLLEQEGIRFVTNTEI------GKHVSL-DELKKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSL 1910 (2142)
T ss_pred HHHHHHHHhhCceEEeeccc------cccccH-HHHhhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhh
Confidence 34556778889999988765 333433 33345889999999985 55554 6888899997654333221 11
Q ss_pred HHh-------hcCCCeEEEECCChHHHHHHHHHHhCCCcEEE-EeeCC---------cccc---cccCHHHHHHHHHHHH
Q 014997 127 ISS-------LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPEN---------HLLQ---RLFTPSLAQRYEQLYQ 186 (414)
Q Consensus 127 ~~~-------~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl-v~~~~---------~~l~---~~~~~~~~~~~~~~l~ 186 (414)
... -.++|+|+|||||.+|-+|...-.++|++... ++--+ .+.| +.|--+....-.+.+
T Consensus 1911 ld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~- 1989 (2142)
T KOG0399|consen 1911 LDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEH- 1989 (2142)
T ss_pred hccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHH-
Confidence 110 12689999999999999999888888865332 22111 1111 111112222211111
Q ss_pred hCCcEEEcCc-eEEEEEecCCCcEEEE------------------EeCC-CcEEecCEEEEccCCc-CCChhhhhcCCcc
Q 014997 187 QNGVKFVKGA-SIKNLEAGSDGRVAAV------------------KLED-GSTIDADTIVIGIGAK-PTVSPFERVGLNS 245 (414)
Q Consensus 187 ~~gv~i~~~~-~v~~i~~~~~~~~~~v------------------~~~~-g~~i~~D~vi~a~G~~-p~~~~l~~~gl~~ 245 (414)
.|-+.++.+ --+++..+++|.++.+ +..+ .+.++||++|++.|+. |.....++.+++.
T Consensus 1990 -~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~ 2068 (2142)
T KOG0399|consen 1990 -YGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKT 2068 (2142)
T ss_pred -hCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCccc
Confidence 222222111 1123333334433322 2222 2469999999999987 5545677888887
Q ss_pred c-CCCEEE-cCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHH
Q 014997 246 S-VGGIQV-DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 298 (414)
Q Consensus 246 ~-~g~i~v-d~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~ 298 (414)
+ ++.|.+ ++.+.|++++|||+|||-.... ..++.++.+++.|+.+-.
T Consensus 2069 d~rsni~t~~~~y~t~v~~vfaagdcrrgqs------lvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2069 DPRSNILTPKDSYSTDVAKVFAAGDCRRGQS------LVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred CccccccCCCccccccccceeecccccCCce------EEEEEehhhhHHHHHHHH
Confidence 6 445655 3568899999999999987543 334444444444444433
No 86
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.37 E-value=8.8e-11 Score=111.17 Aligned_cols=215 Identities=17% Similarity=0.252 Sum_probs=138.2
Q ss_pred hHHHHcCCeEEcCCcEE---EEeCCCC---EEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHH
Q 014997 54 EWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI 127 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~---~id~~~~---~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~ 127 (414)
+|+...--.++++++|+ .++-+.. .+.+.+++.+.+..|||++|.+|..++.......+.+++... ....+
T Consensus 105 ~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~---~~~~~ 181 (436)
T COG3486 105 QWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPPCFRSLIGERVFHSSE---YLERH 181 (436)
T ss_pred HHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCChHHhCcCccceeehHH---HHHhh
Confidence 55556667788999999 4444443 366778889999999999999997444332222234554321 11112
Q ss_pred HhhcCCCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCcccccc--------cCHHHHHH---------------
Q 014997 128 SSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRL--------FTPSLAQR--------------- 180 (414)
Q Consensus 128 ~~~~~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l~~~--------~~~~~~~~--------------- 180 (414)
..+...++|.|||+|.+|.|+-..|... ..++.++.|+..+++.- +.|+..++
T Consensus 182 ~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~ 261 (436)
T COG3486 182 PELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRK 261 (436)
T ss_pred HHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhh
Confidence 2233445599999999999999988653 35688899986654311 11221111
Q ss_pred ---------------HHH-----HH--HhCCcEEEcCceEEEEEecCCCcEEEEEe-----CCCcEEecCEEEEccCCcC
Q 014997 181 ---------------YEQ-----LY--QQNGVKFVKGASIKNLEAGSDGRVAAVKL-----EDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 181 ---------------~~~-----~l--~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-----~~g~~i~~D~vi~a~G~~p 233 (414)
+-+ .+ .+.+|+++.++.|..++..++|++ .+.+ .+.++++.|.||+|||++.
T Consensus 262 ~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~-~l~~~~~~~~~~~t~~~D~vIlATGY~~ 340 (436)
T COG3486 262 QRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY-RLTLRHHETGELETVETDAVILATGYRR 340 (436)
T ss_pred cCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceE-EEEEeeccCCCceEEEeeEEEEeccccc
Confidence 111 11 235688999999999998777752 3333 2335799999999999985
Q ss_pred CCh-hhhhcC--Cc-ccCCCEEEcCCCCCCC-----CcEEEEcccccc
Q 014997 234 TVS-PFERVG--LN-SSVGGIQVDGQFRTRM-----PGIFAIGDVAAF 272 (414)
Q Consensus 234 ~~~-~l~~~g--l~-~~~g~i~vd~~~~t~~-----~~IyA~GD~a~~ 272 (414)
..+ +++... |. +++|...|+..++... -.||+.|-+...
T Consensus 341 ~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 341 AVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred CCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc
Confidence 443 665432 22 3467899998766421 359999877654
No 87
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.32 E-value=9.1e-12 Score=120.05 Aligned_cols=169 Identities=21% Similarity=0.314 Sum_probs=98.6
Q ss_pred cCCeEEcCCcEEEEeCCC------CEEEeC----CCcEEecCeEEEccCCCCCCCCCCCC-CC-CCCEEEecCHHHHHHH
Q 014997 59 KGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTASRFPEKIG-GY-LPGVHYIRDVADADAL 126 (414)
Q Consensus 59 ~~i~~~~~~~V~~id~~~------~~V~~~----~g~~~~yd~LviAtG~~~~~~~~~~g-~~-~~gv~~~~~~~~~~~~ 126 (414)
.+-+++++.+|++|++.. ..|.+. +++.+.++.||||||..|. +|.... .. .+.+++..++....
T Consensus 108 ~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~-iP~~~~~~~~~~~v~Hss~~~~~~-- 184 (341)
T PF13434_consen 108 LDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR-IPEWFQDLPGSPRVFHSSEYLSRI-- 184 (341)
T ss_dssp GTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE----GGGGGGTT-TTEEEGGGHHHHH--
T ss_pred CCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-CCcchhhcCCCCCEEEehHhhhcc--
Confidence 354488899999998765 367763 4568999999999998886 454322 11 25677655443322
Q ss_pred HHhhcCCCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCcccc--------cccCHHH-------------------
Q 014997 127 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ--------RLFTPSL------------------- 177 (414)
Q Consensus 127 ~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~--------~~~~~~~------------------- 177 (414)
......++|+|||||.+|.|++..|.+.+. +|+++.|++.+.+ ..++|+.
T Consensus 185 -~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~ 263 (341)
T PF13434_consen 185 -DQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQ 263 (341)
T ss_dssp -T-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHT
T ss_pred -ccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHh
Confidence 114578999999999999999999998764 7999999865432 1223321
Q ss_pred ------------HHHHHH-----HH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCC---C--cEEecCEEEEccCCc
Q 014997 178 ------------AQRYEQ-----LY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAK 232 (414)
Q Consensus 178 ------------~~~~~~-----~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g--~~i~~D~vi~a~G~~ 232 (414)
.+.+.+ .+ .+..++++.+++|+.++..+++.+ .+.+.+ + .++++|.||+|||++
T Consensus 264 ~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 264 RHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp GGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--EEEEEESEEEE---EE
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 111111 11 223588999999999987765443 344433 2 479999999999985
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.19 E-value=5e-11 Score=106.67 Aligned_cols=111 Identities=24% Similarity=0.339 Sum_probs=73.2
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCC--CCCCCCCCCC-CCCCCEEEecCHHHHH
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHYIRDVADAD 124 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~--~~~~~~~~~g-~~~~gv~~~~~~~~~~ 124 (414)
.....++++++++++++++|+++..++ ..|++++++++.+|+||+|||. .|+ .|.+++ ... ...+...+.+.
T Consensus 86 ~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h~~~~~~~- 162 (203)
T PF13738_consen 86 DYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIHSADWRDP- 162 (203)
T ss_dssp HHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEEGGG-STT-
T ss_pred HHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEehhhcCCh-
Confidence 344556677899999999999998765 4899999988999999999996 554 454555 222 33333222111
Q ss_pred HHHHhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997 125 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167 (414)
Q Consensus 125 ~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 167 (414)
...++++|+|||+|.+|+++|..|.+.|.+|+++.|.+.
T Consensus 163 ----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 163 ----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp ----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 123679999999999999999999999999999999863
No 89
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.17 E-value=7.1e-10 Score=109.50 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=111.2
Q ss_pred EEECCChHHHHHH-HHHH----hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 137 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 137 vVvGgG~~g~e~A-~~l~----~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.|++.+.+|+|.+ ..+. ++|.+|+++...+..++. .++.+.+.+.+++.|++++++++|.+++.. ++.+..
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~ 294 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTA 294 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEE
Confidence 6788999999999 5554 479999999988887764 378888999999999999999999999865 445555
Q ss_pred EEeCCCc--EEecCEEEEccCCcCCChhhhh--------cCCcc--------------------cCCCEEEcCCCC----
Q 014997 212 VKLEDGS--TIDADTIVIGIGAKPTVSPFER--------VGLNS--------------------SVGGIQVDGQFR---- 257 (414)
Q Consensus 212 v~~~~g~--~i~~D~vi~a~G~~p~~~~l~~--------~gl~~--------------------~~g~i~vd~~~~---- 257 (414)
+...+|+ .+++|.+|+|+|..+...+..+ .+|+. ..-||.||++++
T Consensus 295 v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~~ 374 (422)
T PRK05329 295 VWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLDS 374 (422)
T ss_pred EEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcccC
Confidence 5555553 5899999999998765433100 01111 112455555554
Q ss_pred ---CCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 258 ---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 258 ---t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
+..+|+||+|++...+++..-.. .-..|...|..|+++++.
T Consensus 375 ~g~~~~~nl~a~G~vl~g~d~~~~~~----g~Gva~~ta~~a~~~~~~ 418 (422)
T PRK05329 375 QGGPVIENLYAAGAVLGGYDPIREGC----GSGVALATALHAAEQIAE 418 (422)
T ss_pred CCCeeccceEEeeehhcCCchHHhCC----CchhHHHHHHHHHHHHHH
Confidence 46899999999998776532110 112467777778877764
No 90
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=99.09 E-value=8.8e-10 Score=83.89 Aligned_cols=81 Identities=23% Similarity=0.382 Sum_probs=65.8
Q ss_pred ceeeeccCCCCCCcceeeeEeecCCC--cEEEEcCCC-CcEEEEEEeCCEEEEEEeecCChHHhhHHHHHHhCCCCCChh
Q 014997 313 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 389 (414)
Q Consensus 313 ~~~~~~~~~~g~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (414)
||||+||+.+ +|++|.... +.+.+|+.+ .+|..+|+++|+++|++. +|.++++..++++|+.+..++++
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 8999999864 999997653 677888876 789999999999999996 89999999999999999999999
Q ss_pred hhcCCCcHHHHH
Q 014997 390 KLQQASSVEEAL 401 (414)
Q Consensus 390 ~~~~~~~~~~~~ 401 (414)
.+.++..-...+
T Consensus 73 ~l~d~~~~L~~l 84 (85)
T PF14759_consen 73 RLADPSVDLRSL 84 (85)
T ss_dssp HHHSTTSHHHHH
T ss_pred HhcCCCCChHHh
Confidence 998887765543
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.89 E-value=2.2e-08 Score=94.98 Aligned_cols=99 Identities=22% Similarity=0.317 Sum_probs=78.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc---cc--------cc----ccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~---~l--------~~----~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 199 (414)
+|+|||||+.|+++|..|+++|.+|+++++.+. +. +. ..+.++...+.+.+++.|+++++ .+|.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999997641 11 11 12357778888888999999998 8898
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+++..++ ...+.+.+++++.+|.+|+|+|..|+..
T Consensus 81 ~v~~~~~--~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSDR--PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecCC--eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 9876432 2356777888999999999999988643
No 92
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.85 E-value=4.4e-08 Score=93.31 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=86.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------------------------------------- 168 (414)
..|+|||||+.|+-+|..+++.|.+|+++++++.+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 57999999999999999999999999999987332
Q ss_pred ----------------cccccC-----HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997 169 ----------------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227 (414)
Q Consensus 169 ----------------l~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 227 (414)
..++|+ ..+.+.+.+.+++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 011121 2455677788899999999999999998653 34578889998999999999
Q ss_pred ccC--CcCCC-------hhhhhcCCcc
Q 014997 228 GIG--AKPTV-------SPFERVGLNS 245 (414)
Q Consensus 228 a~G--~~p~~-------~~l~~~gl~~ 245 (414)
|+| ..|.+ .++++.|++.
T Consensus 162 AtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 162 ATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred ecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 999 44532 3567777654
No 93
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.78 E-value=2e-07 Score=92.58 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=61.6
Q ss_pred CCcEEEcCceEEEEEecCCCcEEEEEeC-----------CC--cEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997 188 NGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG 254 (414)
Q Consensus 188 ~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~ 254 (414)
+-+.+++..+..+|.. .++++..+++. .| +.++||+|+-++|++... +. |++.+ ..+...
T Consensus 324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p--~~--g~pFd-~~~~n~- 396 (506)
T PTZ00188 324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FA--ENLYN-QSVQMF- 396 (506)
T ss_pred eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCC--CC--CCCcc-ccCCCC-
Confidence 3466777778888874 24667666665 23 369999999999998641 22 23333 222221
Q ss_pred CCCC--CCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 014997 255 QFRT--RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 300 (414)
Q Consensus 255 ~~~t--~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i 300 (414)
..+. ..|++|++|-+...|....|. +..+|...+..+...+
T Consensus 397 ~grv~~~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 397 KEDIGQHKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCcccCCCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 1222 369999999999887665444 2334555555444443
No 94
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.72 E-value=9e-08 Score=95.79 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=74.6
Q ss_pred CHhHHHHcCCe--EEcCCcEEEEeCCC----CEEEeCCCcE--EecCeEEEccCC--CCCCCCCCCCCCCCCEEEecCHH
Q 014997 52 TPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGC--TASRFPEKIGGYLPGVHYIRDVA 121 (414)
Q Consensus 52 ~~~~~~~~~i~--~~~~~~V~~id~~~----~~V~~~~g~~--~~yd~LviAtG~--~~~~~~~~~g~~~~gv~~~~~~~ 121 (414)
..++++++++. +..+..|..++.+. .+|++++|.. +.+|+||+|||. .|. .|.++|.+......++
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f~g~~~H--- 163 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEFKGRILH--- 163 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCCCceEEc---
Confidence 34566666654 44455666565544 3788888865 459999999996 343 4555554321111222
Q ss_pred HHHHHHH-hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997 122 DADALIS-SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167 (414)
Q Consensus 122 ~~~~~~~-~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 167 (414)
+.+..+ ....+|+|+|||+|.+|+++|..|.+.|.+||++.|.+.
T Consensus 164 -S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 164 -SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred -hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 222111 124799999999999999999999999999999999864
No 95
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=98.67 E-value=2.6e-07 Score=86.92 Aligned_cols=66 Identities=29% Similarity=0.462 Sum_probs=47.6
Q ss_pred EecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHH-------HHHHHHhhcCCCeEEEECCChHHHHHHHHHH
Q 014997 87 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALISSLEKAKKVVVVGGGYIGMEVAAAAV 153 (414)
Q Consensus 87 ~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~-------~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~ 153 (414)
-.||.+|||+|+.-.+-..+||.++.||++.+.+-. .+.+...+ .+.+|+|||.|+.++++|..|.
T Consensus 107 ~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dl-s~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 107 DNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDL-SGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred hcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCccc-ccceEEEEccCchhhhhhhhhh
Confidence 479999999999644445678988899987653321 11111112 3789999999999999999874
No 96
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.62 E-value=3.1e-07 Score=91.00 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccc-cc-ccCHHHH---------HHHHHHHHhCCcEEEcCceEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL-QR-LFTPSLA---------QRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l-~~-~~~~~~~---------~~~~~~l~~~gv~i~~~~~v~ 199 (414)
.++|+|||||+.|+.+|..|++.+. +|+++++.+.+. .+ .+...+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999875 799998775421 11 1111110 001244677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+... .+ .+.+++|+++.+|.+|+|||.+|.
T Consensus 83 ~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 83 TLGRD--TR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred EEECC--CC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 99753 22 567788889999999999999985
No 97
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.61 E-value=3.1e-07 Score=90.65 Aligned_cols=109 Identities=19% Similarity=0.340 Sum_probs=70.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc----------------------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------- 168 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------------------------- 168 (414)
+|+|||||++|+-+|..+++.|.+|+|+++++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999998332
Q ss_pred --------------------ccccc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997 169 --------------------LQRLF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227 (414)
Q Consensus 169 --------------------l~~~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 227 (414)
.|... ..++.+.+.+.+++.||+++++++|.++... ++.+..|.++++..+.||.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEE
Confidence 11110 1235566777788999999999999999865 3445678887778999999999
Q ss_pred ccCCcCC--C-------hhhhhcCCc
Q 014997 228 GIGAKPT--V-------SPFERVGLN 244 (414)
Q Consensus 228 a~G~~p~--~-------~~l~~~gl~ 244 (414)
|+|-... + .++++.|..
T Consensus 161 AtGG~S~p~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 161 ATGGKSYPKTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp ----SSSGGGT-SSHHHHHHHHTT--
T ss_pred ecCCCCccccCCCcHHHHHHHHCCCc
Confidence 9997542 1 246666654
No 98
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.58 E-value=4.3e-06 Score=77.39 Aligned_cols=166 Identities=18% Similarity=0.234 Sum_probs=102.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------cc---------------------------cCH
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------RL---------------------------FTP 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------~~---------------------------~~~ 175 (414)
.-+|+|||+|+.|+-+|..|++.|.+|.++++...+.. .. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 45799999999999999999999999999998754310 00 011
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCC-cEEEEEeC-----------CCcEEecCEEEEccCCcCCC-hhh-hhc
Q 014997 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG-RVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPF-ERV 241 (414)
Q Consensus 176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~-~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~-~~l-~~~ 241 (414)
++...+.+...+.|++++.++.+.++...+++ ++..+... +...+.++.||.|+|..... .++ +..
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 23445556667889999999999998764442 56666553 22479999999999976533 333 333
Q ss_pred CCcccC------CCE--------EEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 242 GLNSSV------GGI--------QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 242 gl~~~~------g~i--------~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
++.... +.. .|+.+-+ -+|++|++|=.+.-... ..++.+ ....-...|+.||..++.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~-~~~g~~~~gm~~~~~~~-~~rmgp--~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTRE-VVPNLYVAGMAVAAVHG-LPRMGP--IFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCc-ccCCEEEechhhhhhcC-CCCcCc--hHHHHHHhhHHHHHHHHH
Confidence 322110 111 1111111 47999999987653211 011111 122223467777776653
No 99
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.57 E-value=8.1e-07 Score=91.00 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=79.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Cccc-----------ccccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKGASI 198 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~l-----------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v 198 (414)
...+|+|||||+.|+.+|..|++.|.+|++++.. ..+. +....+++.+.+.+.+++.|++++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 3468999999999999999999999999998642 1111 11234567778888888999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
..+...++ ...+.+++|+.+.+|.+|+|+|..|.
T Consensus 291 ~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 291 KKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence 99975432 23567788888999999999999875
No 100
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.56 E-value=6e-07 Score=80.13 Aligned_cols=97 Identities=21% Similarity=0.357 Sum_probs=67.3
Q ss_pred EEECCChHHHHHHHHHHhCCCc-EEEEeeCCcccc--------------c----------------------------cc
Q 014997 137 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF 173 (414)
Q Consensus 137 vVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l~--------------~----------------------------~~ 173 (414)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. . ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998743310 0 00
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC--cCCC
Q 014997 174 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV 235 (414)
Q Consensus 174 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~--~p~~ 235 (414)
.+++.++++...++.+++++++++|+++..++++ ..|++.+++++.||.||+|+|. .|..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB--
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCc
Confidence 1234567788888899999999999999987655 4788899888999999999997 4543
No 101
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.55 E-value=2.9e-06 Score=78.68 Aligned_cols=166 Identities=19% Similarity=0.220 Sum_probs=102.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------c--------------------------c-CH
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------L--------------------------F-TP 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------~--------------------------~-~~ 175 (414)
...|+|||+|+.|+-+|..|++.|.+|.++++.+.+... . . ..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987543110 0 0 12
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCCh-hh-hhcC
Q 014997 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERVG 242 (414)
Q Consensus 176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~l-~~~g 242 (414)
.+...+.+..++.|++++.++.+..+...+++++..+... +...+.|+.||.|+|...... .+ +...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 3444566666788999999999999876545465555432 224799999999999765422 12 2111
Q ss_pred ---Cccc-CC--------CEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 243 ---LNSS-VG--------GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 243 ---l~~~-~g--------~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.... .. ...|+.+-+ -+|++|++|=.+..... ..++-+ ....-...|+.||..++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~-~~rmg~--~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHG-LPRMGP--IFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcC-CCccCc--hhHhHHHhHHHHHHHHHH
Confidence 1110 01 112222222 37999999988763221 011111 122223467777776653
No 102
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.54 E-value=1.2e-06 Score=89.85 Aligned_cols=100 Identities=25% Similarity=0.368 Sum_probs=80.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 199 (414)
..+|+|||||+.|+.+|..++++|.+|+++... ... .+...++++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 358999999999999999999999999999753 111 0112345777888888999999999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+...++ ...+.+.+|+++.+|.+|+|+|.+|.
T Consensus 291 ~I~~~~~--~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 291 KLEPAAG--LIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEecCC--eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9976432 23567788889999999999999875
No 103
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.53 E-value=3.1e-07 Score=91.03 Aligned_cols=169 Identities=20% Similarity=0.268 Sum_probs=104.3
Q ss_pred CHhHHHHcCC--eEEcCCcEEEEeCCC---CEEEeCCC----cEEecCeEEEccCCCC-CCCCCCCCC---CCCCEEEec
Q 014997 52 TPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPEKIGG---YLPGVHYIR 118 (414)
Q Consensus 52 ~~~~~~~~~i--~~~~~~~V~~id~~~---~~V~~~~g----~~~~yd~LviAtG~~~-~~~~~~~g~---~~~gv~~~~ 118 (414)
+.++++..++ .+.++++|..+++.. ..|.+.++ +..-||.|++|||... ..+|.+++. ..+|-.
T Consensus 96 L~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~--- 172 (448)
T KOG1399|consen 96 LRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKI--- 172 (448)
T ss_pred HHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcc---
Confidence 4455666675 477788888888765 36666544 4689999999999873 235554442 233311
Q ss_pred CHHHHHHHH-HhhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 119 DVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 119 ~~~~~~~~~-~~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
-++.+.+ ...-.+|+|+|||+|.+|++++..++....+|++..+ ...... ..+ .. .-.++..+..
T Consensus 173 --iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~-------~~-~~~~~~~~~~-- 238 (448)
T KOG1399|consen 173 --IHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPP-------EI-LGENLWQVPS-- 238 (448)
T ss_pred --eehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-ccc-------ce-eecceEEccc--
Confidence 1122222 2234679999999999999999999888888887754 100000 000 00 1112333322
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997 198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
|..+.. ++ .+.+.++....+|.+|+|+|+.-...+++..+
T Consensus 239 i~~~~e--~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 239 IKSFTE--DG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred cccccC--cc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 555542 22 35667777889999999999987766665543
No 104
>PRK06847 hypothetical protein; Provisional
Probab=98.50 E-value=1.7e-06 Score=85.03 Aligned_cols=102 Identities=26% Similarity=0.368 Sum_probs=78.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------------------
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------- 170 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------- 170 (414)
+.++|+|||||+.|+-+|..|++.|.+|+++++.+.+-.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 357899999999999999999999999999997642100
Q ss_pred ----cc----------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997 171 ----RL----------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230 (414)
Q Consensus 171 ----~~----------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 230 (414)
.. ..+++.+.+.+.+++.|++++.++++++++..+++ ..+.+.+|+++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence 00 00234455666677789999999999999864333 357788899999999999999
Q ss_pred CcCCC
Q 014997 231 AKPTV 235 (414)
Q Consensus 231 ~~p~~ 235 (414)
..+..
T Consensus 161 ~~s~~ 165 (375)
T PRK06847 161 LYSKV 165 (375)
T ss_pred CCcch
Confidence 87654
No 105
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.50 E-value=7.7e-07 Score=89.59 Aligned_cols=101 Identities=22% Similarity=0.404 Sum_probs=71.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc------cccc----C--HHHHHHHHHHHHhCCcEEEcCceEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QRLF----T--PSLAQRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l------~~~~----~--~~~~~~~~~~l~~~gv~i~~~~~v~ 199 (414)
++|+|||||+.|+.+|..|++++ .+|+++++.+.+. +... . .+......+.+++.||+++.++.|.
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999875 4899999887531 1111 1 1122233456788899999999999
Q ss_pred EEEecCCCcEEEEEe-CCCcEEe--cCEEEEccCCcCCCh
Q 014997 200 NLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVS 236 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~-~~g~~i~--~D~vi~a~G~~p~~~ 236 (414)
+++.++ +...+.. .+|+.+. +|.+|+|+|.+|+..
T Consensus 81 ~id~~~--~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAKN--KTITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECCC--CEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 997542 2222322 2355666 999999999998754
No 106
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.47 E-value=8.9e-06 Score=81.89 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc---------------------------------------
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------------------- 172 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------------------------------------- 172 (414)
..++|+|||+|++|+-+|..|++.|.+|+++++++.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 45899999999999999999999999999999864321100
Q ss_pred ------------------c--CHHHHHHHHHHHHhCCcE--EEcCceEEEEEecCCCcEEEEEeCC--Cc--EEecCEEE
Q 014997 173 ------------------F--TPSLAQRYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIV 226 (414)
Q Consensus 173 ------------------~--~~~~~~~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~--g~--~i~~D~vi 226 (414)
+ ..++.+++++..+..|+. +.++++|.+++..++. ..|.+.+ +. +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~--w~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK--WRVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe--EEEEEEcCCCceEEEEcCEEE
Confidence 0 034666777777788988 8899999999865332 2344432 22 46799999
Q ss_pred EccC--CcCCCh
Q 014997 227 IGIG--AKPTVS 236 (414)
Q Consensus 227 ~a~G--~~p~~~ 236 (414)
+|+| ..|+..
T Consensus 167 vAtG~~~~P~~P 178 (461)
T PLN02172 167 VCNGHYTEPNVA 178 (461)
T ss_pred EeccCCCCCcCC
Confidence 9999 456543
No 107
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.42 E-value=1.2e-06 Score=85.68 Aligned_cols=97 Identities=20% Similarity=0.327 Sum_probs=72.1
Q ss_pred eEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcccc-cccC---------HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQ-RLFT---------PSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~l~-~~~~---------~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
+|+|||||+.|+.+|..|+++ +.+|+++++.+.... +.++ .++...+.+.+++.||+++.+ .|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999643 588999998765321 1111 123233456677889999885 78888
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+... + .|.+.+|+++.+|.+|+|+|.+|+..
T Consensus 80 d~~~--~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPDR--R--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred eccc--C--EEEECCCCcccccEEEEccCCCCCCC
Confidence 7542 2 57788898899999999999998744
No 108
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.41 E-value=1.9e-06 Score=86.14 Aligned_cols=99 Identities=23% Similarity=0.373 Sum_probs=71.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc---------C-HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF---------T-PSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~---------~-~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
..++|||||||+.|+.+|..|.+.+.+||+|++.+......+ + ..+...+.+.++..+++++. .+|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 457999999999999999999766789999998876432111 1 12222345556677898876 478888
Q ss_pred EecCCCcEEEEEe----------CCCcEEecCEEEEccCCcCCC
Q 014997 202 EAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 202 ~~~~~~~~~~v~~----------~~g~~i~~D~vi~a~G~~p~~ 235 (414)
+.+. + .+.+ ++|.++++|.+|+|+|.+|+.
T Consensus 88 d~~~--~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 88 DFEE--K--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EcCC--C--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 7542 2 2333 466789999999999999764
No 109
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.40 E-value=1.4e-06 Score=93.47 Aligned_cols=97 Identities=19% Similarity=0.419 Sum_probs=73.8
Q ss_pred EEEECCChHHHHHHHHHHhCC---CcEEEEeeCCccc------ccccC-----HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 136 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLL------QRLFT-----PSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~~l------~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
|||||+|+.|+.+|..|++++ .+||++++.+++. +..+. +++.....+.+++.||++++++.|+.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 589999999999999988754 6899999887642 11111 112122346678899999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+.. .+ .|.+.+|+++++|.+|+|||..|...
T Consensus 81 d~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTD--QK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 754 22 57788898999999999999998744
No 110
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.39 E-value=2.1e-05 Score=77.06 Aligned_cols=230 Identities=20% Similarity=0.302 Sum_probs=130.6
Q ss_pred CeEEcCCcEEEEeCC----CCEEEeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCE-EEecCHHHHHHHHHhhcCCCe
Q 014997 61 IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKK 135 (414)
Q Consensus 61 i~~~~~~~V~~id~~----~~~V~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~ 135 (414)
+.++. ++++.+.+. ...+.+.+|+...+|-+|+|||..+...+. ...++++- -++.+...... +..+....+
T Consensus 122 v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~dr 198 (474)
T COG4529 122 VRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDR 198 (474)
T ss_pred eeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCc
Confidence 45544 567766655 237788899999999999999976532222 11222221 12222222222 223445667
Q ss_pred EEEECCChHHHHHHHHHHhCCC--cEEEEeeCCccccc------------c-----------------------------
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR------------L----------------------------- 172 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~--~Vtlv~~~~~~l~~------------~----------------------------- 172 (414)
|+|+|+|.+.++....|+++|. +||++.|.. ++++ .
T Consensus 199 Vli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w 277 (474)
T COG4529 199 VLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPRPHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDW 277 (474)
T ss_pred eEEecCCchhHHHHHHHhccCCccceEEEeccc-cccCCCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCH
Confidence 9999999999999999999874 588888772 1100 0
Q ss_pred ----------------------------------------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 173 ----------------------------------------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 173 ----------------------------------------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+.+.+...+.+.+.+.-++++-+ ++..|.....+.....
T Consensus 278 ~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr~R~a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~ 356 (474)
T COG4529 278 RDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHRFRLAPAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTY 356 (474)
T ss_pred HHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHHhhhhHHHHhhhhHHhhcchhheecC-ceeecccccCCceEEe
Confidence 01111111222222222344433 3455554444432222
Q ss_pred EeC--C-CcEEecCEEEEccCCcCCCh-----hhh---hcCCcc---cCCCEEEcCCCCC------CCCcEEEEcccccc
Q 014997 213 KLE--D-GSTIDADTIVIGIGAKPTVS-----PFE---RVGLNS---SVGGIQVDGQFRT------RMPGIFAIGDVAAF 272 (414)
Q Consensus 213 ~~~--~-g~~i~~D~vi~a~G~~p~~~-----~l~---~~gl~~---~~g~i~vd~~~~t------~~~~IyA~GD~a~~ 272 (414)
... + -+++++|.||-|+|..+... +|. +.|+.. ...||.|+++.+. ..++.||+|-.+..
T Consensus 357 r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G 436 (474)
T COG4529 357 RERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRG 436 (474)
T ss_pred eccccCccceeeeeEEEEcCCcCcCCCccchHHHHHHHhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCC
Confidence 221 1 14789999999999876432 333 345543 2468999887764 46889999988765
Q ss_pred CCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 273 PLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 273 ~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.... +.....-..|+..+|..++
T Consensus 437 ~f~e------i~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 437 TFWE------IDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred chhh------hccChHHHHHHHHHHHHHh
Confidence 4211 1122334556666666665
No 111
>PRK07236 hypothetical protein; Provisional
Probab=98.38 E-value=2.9e-06 Score=83.81 Aligned_cols=101 Identities=20% Similarity=0.299 Sum_probs=72.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----ccCHHHHHHHH------------------------
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYE------------------------ 182 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~~~~~~~~~~------------------------ 182 (414)
...+|+|||||+.|+.+|..|++.|.+|+|+++.+..... .+.+...+.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 3578999999999999999999999999999988643211 02222222221
Q ss_pred -------------------HHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 183 -------------------QLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 183 -------------------~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.|.+ .+++++.++++++++.++++ ..+.+.+|+++.+|.||.|-|....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCch
Confidence 11111 13568999999999865433 3578899999999999999997654
No 112
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.36 E-value=2.6e-06 Score=91.62 Aligned_cols=100 Identities=18% Similarity=0.412 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCccc------ccccC----HHHHHHHHHHHHhCCcEEEcCceE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKGASI 198 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~l------~~~~~----~~~~~~~~~~l~~~gv~i~~~~~v 198 (414)
.++|+|||+|..|+.+|..|+++ +.+||++.+.+++. +..+. +++.....+.+++.||+++.++.|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 35899999999999999999765 46899999887642 11111 122222345678899999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
..+... .+ .|.+.+|+++.+|.+|+|||.+|...
T Consensus 83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCC
Confidence 998743 22 56778888999999999999998744
No 113
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.35 E-value=4.7e-06 Score=80.86 Aligned_cols=95 Identities=25% Similarity=0.452 Sum_probs=70.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Ccc-----------------------------------------c---
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L--- 169 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~-----------------------------------------l--- 169 (414)
.|+|||||..|||+|..+++.|.+|.++... +.+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999433 111 0
Q ss_pred --c------cccC-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997 170 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 170 --~------~~~~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (414)
+ .+.| ....+.+.+.+++ .+++++. .+|+++.. +++++..|.+.+|+.+.+|.||+|+|.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~-~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ-GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE-S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE-cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 0122 2356667777777 6899975 67999975 468899999999999999999999999
No 114
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.34 E-value=3e-06 Score=91.21 Aligned_cols=91 Identities=27% Similarity=0.294 Sum_probs=68.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||||+.|+.+|..|+++|.+|+++++.+.+... .++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 4689999999999999999999999999999987654211 123344444456778899999999876 222
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.+.....+|.||+|+|..+.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 222334568999999999854
No 115
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.33 E-value=1.8e-06 Score=84.15 Aligned_cols=101 Identities=17% Similarity=0.159 Sum_probs=69.0
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLE 202 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~ 202 (414)
..+++|+|||+|+.|+++|..|++.|.+|+++++.+.+.... ++.+......+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 357899999999999999999999999999999987654211 122333334455677799999998876553
Q ss_pred e---cCCCcE-E-EEEeCCCcEEecCEEEEccCCc
Q 014997 203 A---GSDGRV-A-AVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 203 ~---~~~~~~-~-~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
. ..+... . .+..+ +..+.+|.||+|+|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 96 PLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTW 129 (352)
T ss_pred ccccccccccccccCCHH-HHHhhCCEEEEEeCCC
Confidence 2 111111 0 11111 2247899999999984
No 116
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.33 E-value=2.3e-05 Score=76.19 Aligned_cols=178 Identities=24% Similarity=0.386 Sum_probs=105.0
Q ss_pred EEecCeEEEccCCCCCCCCCC--CC-CCCCCEEEecCHHHHHHHHHh-------------hcCCCeEEEE---CCCh---
Q 014997 86 LLKYGSLIVATGCTASRFPEK--IG-GYLPGVHYIRDVADADALISS-------------LEKAKKVVVV---GGGY--- 143 (414)
Q Consensus 86 ~~~yd~LviAtG~~~~~~~~~--~g-~~~~gv~~~~~~~~~~~~~~~-------------~~~~~~vvVv---GgG~--- 143 (414)
++..-.+|+|||-.+...... .| ...++|.+. ...+++... -.++|+|+.| |+-.
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~---lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~ 374 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITN---LELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQV 374 (622)
T ss_pred EEEeceEEEEccccccCcchhhhcCCCCCcchhhH---HHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCccc
Confidence 467788999999876432211 11 113444432 223333321 1135677665 5433
Q ss_pred -----HHHHHHHHH------HhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997 144 -----IGMEVAAAA------VGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210 (414)
Q Consensus 144 -----~g~e~A~~l------~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~ 210 (414)
+-.-++..| +++ ..+|+++...-| .++...-++..+.-++.||+++.+. +.+|...+++.+
T Consensus 375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l- 448 (622)
T COG1148 375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKL- 448 (622)
T ss_pred CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCee-
Confidence 122222233 232 356777766553 3454555566665558899999874 667766666652
Q ss_pred EEEeCC---C--cEEecCEEEEccCCcCCCh---hhhhcCCccc-CCCEEEc-CCCC---CCCCcEEEEcccccc
Q 014997 211 AVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VGGIQVD-GQFR---TRMPGIFAIGDVAAF 272 (414)
Q Consensus 211 ~v~~~~---g--~~i~~D~vi~a~G~~p~~~---~l~~~gl~~~-~g~i~vd-~~~~---t~~~~IyA~GD~a~~ 272 (414)
.|...| | .++++|+|++++|+.|... +.+.+||..+ +|++... +.++ |+.++||.+|-|...
T Consensus 449 ~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgP 523 (622)
T COG1148 449 IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGP 523 (622)
T ss_pred EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCC
Confidence 333333 3 4799999999999998543 3456788764 5666654 4444 688999999977654
No 117
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.33 E-value=3.7e-06 Score=81.50 Aligned_cols=64 Identities=31% Similarity=0.517 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl 243 (414)
+.+.+.+.+++.|++++.+++|+++..+ ++.+..|.+.+|+ +.+|.||+|+|.... .++...+.
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred hhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 4556666678899999999999999865 5556669999997 999999999998654 45555554
No 118
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.33 E-value=2.1e-06 Score=93.30 Aligned_cols=93 Identities=24% Similarity=0.201 Sum_probs=72.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|++||++++.+++... .++.++.+...+.+++.||+|++|+.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 4799999999999999999999999999999988654221 13456666666778899999999865411
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCc-CC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~-p~ 234 (414)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 3455555556799999999984 54
No 119
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.1e-05 Score=73.43 Aligned_cols=98 Identities=22% Similarity=0.376 Sum_probs=74.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCC-c--------------ccccccCHHHHHHHHHHHHhCCcEEEcCce
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN-H--------------LLQRLFTPSLAQRYEQLYQQNGVKFVKGAS 197 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~-~--------------~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~ 197 (414)
..|+|||+|+.|+-+|.++.+.+.+ +.+++... . +-.....+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4799999999999999999999988 44554421 1 011134567777888888888999988 66
Q ss_pred EEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997 198 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 198 v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (414)
|.+++..++ ...|.+++|+ +.|+.||+|+|..+..
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccC
Confidence 777765432 5678888887 9999999999998753
No 120
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.30 E-value=3.4e-06 Score=82.20 Aligned_cols=99 Identities=23% Similarity=0.448 Sum_probs=75.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccccccc----------CHHHHHHHHHHHHhCC-cEEEcCceEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKGASIK 199 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~g-v~i~~~~~v~ 199 (414)
.+++||+|||+.|+.+|..|.+.- .+||+|++.+..+-..+ ..++..-+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 578999999999999999999874 88999999875432111 1233445667777555 999875 588
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+|+.+ ++ .|.+.++..+++|.+|+++|..++..
T Consensus 82 ~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence 88754 22 67888877899999999999998753
No 121
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.30 E-value=9.7e-06 Score=76.48 Aligned_cols=97 Identities=20% Similarity=0.283 Sum_probs=73.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------------c----
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R---- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~---- 171 (414)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998753210 0
Q ss_pred -----cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCcEEecCEEEEccCCcC
Q 014997 172 -----LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 172 -----~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G~~p 233 (414)
.+ ...+.+.+.+.+++.|++++.+++++++...+++ + .+.+. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~-~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDR-V-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCE-E-EEEEcCccEEEEeCEEEECCCcch
Confidence 01 1245566777778899999999999998755333 2 33333 345799999999999864
No 122
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.29 E-value=2.5e-06 Score=86.14 Aligned_cols=90 Identities=22% Similarity=0.302 Sum_probs=69.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+++|..|+++|.+|+++++.+.+.. . .++.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 468999999999999999999999999999998876521 1 13556677777888999999999886521
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
.+.+++.. +.+|.||+|+|..
T Consensus 216 -------~v~~~~~~-~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDELR-AGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHHH-hhCCEEEEccCCC
Confidence 12233333 7899999999985
No 123
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.28 E-value=6.3e-06 Score=82.79 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=68.0
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc--ccCHH-------HHHHH----HHHHHhCCcEEEcCceE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR--LFTPS-------LAQRY----EQLYQQNGVKFVKGASI 198 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~--~~~~~-------~~~~~----~~~l~~~gv~i~~~~~v 198 (414)
++|+|||||+.|+.+|..|+++ +.+|+++++.+.+.-. .++.- ....+ ....++.||+++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999877 5789999998643211 01110 11111 23335679999999999
Q ss_pred EEEEecCCCcEEEEEeCC-Cc--EEecCEEEEccCCcCCC
Q 014997 199 KNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKPTV 235 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~~~-g~--~i~~D~vi~a~G~~p~~ 235 (414)
.+|+.+ .+...+...+ ++ ++.+|.+|+|+|.+|+.
T Consensus 82 ~~Id~~--~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~ 119 (438)
T PRK13512 82 IAINDE--RQTVTVLNRKTNEQFEESYDKLILSPGASANS 119 (438)
T ss_pred EEEECC--CCEEEEEECCCCcEEeeecCEEEECCCCCCCC
Confidence 999754 2322233222 22 47899999999999864
No 124
>PRK06834 hypothetical protein; Provisional
Probab=98.26 E-value=1.3e-05 Score=81.63 Aligned_cols=107 Identities=23% Similarity=0.366 Sum_probs=78.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---ccc--------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QRL-------------------------------------- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---~~~-------------------------------------- 172 (414)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999763210 000
Q ss_pred ---c-----------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997 173 ---F-----------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 173 ---~-----------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
+ ...+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.|..+.. -
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v--R 159 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV--R 159 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc--H
Confidence 0 0122334555667789999999999999865443 24667788889999999999998753 2
Q ss_pred hhcCCc
Q 014997 239 ERVGLN 244 (414)
Q Consensus 239 ~~~gl~ 244 (414)
+..|+.
T Consensus 160 ~~lgi~ 165 (488)
T PRK06834 160 KAAGID 165 (488)
T ss_pred hhcCCC
Confidence 344444
No 125
>PRK07045 putative monooxygenase; Reviewed
Probab=98.25 E-value=1.6e-05 Score=78.54 Aligned_cols=101 Identities=22% Similarity=0.280 Sum_probs=76.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 170 (414)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999997642200
Q ss_pred --cc-------cC-------HHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 171 --RL-------FT-------PSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 171 --~~-------~~-------~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
.. .+ ..+.+.+.+.+. ..|++++++++++.++.++++.+..|.+++|+++.+|.||-|.|...
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 00 00 012233333443 35799999999999987766665678889999999999999999875
Q ss_pred C
Q 014997 234 T 234 (414)
Q Consensus 234 ~ 234 (414)
.
T Consensus 166 ~ 166 (388)
T PRK07045 166 M 166 (388)
T ss_pred H
Confidence 4
No 126
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.25 E-value=1.2e-05 Score=79.47 Aligned_cols=108 Identities=27% Similarity=0.358 Sum_probs=78.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-------------c-c-----------------c----------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------L-Q-----------------R---------- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-------------l-~-----------------~---------- 171 (414)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.. + + .
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 457999999999999999999999999999985311 0 0 0
Q ss_pred ---------cc-----C----------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997 172 ---------LF-----T----------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227 (414)
Q Consensus 172 ---------~~-----~----------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 227 (414)
.+ + ..+.+.+.+.+++.|++++.++++++++.++++ + .+++++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADR-V-RLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCe-E-EEEECCCCEEEeCEEEE
Confidence 00 0 122344555567789999999999999865433 3 47788888999999999
Q ss_pred ccCCcCCChhhhhcCCc
Q 014997 228 GIGAKPTVSPFERVGLN 244 (414)
Q Consensus 228 a~G~~p~~~~l~~~gl~ 244 (414)
|.|..+. +.+..++.
T Consensus 164 AdG~~S~--vr~~~g~~ 178 (392)
T PRK08773 164 ADGAAST--LRELAGLP 178 (392)
T ss_pred ecCCCch--HHHhhcCC
Confidence 9999874 33334443
No 127
>PLN02463 lycopene beta cyclase
Probab=98.24 E-value=1.2e-05 Score=80.58 Aligned_cols=98 Identities=26% Similarity=0.327 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-cccc---------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRLF--------------------------------------- 173 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~~~--------------------------------------- 173 (414)
-+|+|||||+.|+.+|..|++.|.+|.++++.+... ++..
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999999864211 1000
Q ss_pred ----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 174 ----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 174 ----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
...+.+.+.+.+.+.|++++ ..+|++++..+++ ..|.+++|+++.||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 01223445555677899997 4688898865333 3678889989999999999998764
No 128
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.23 E-value=1.2e-05 Score=79.09 Aligned_cols=98 Identities=16% Similarity=0.308 Sum_probs=69.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc-cc-ccC---------HHHHH-HHHHHHHhCCcEEEcCceEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL-QR-LFT---------PSLAQ-RYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l-~~-~~~---------~~~~~-~~~~~l~~~gv~i~~~~~v~ 199 (414)
++++|||+|+.|+.+|..|++++ .+||++.+.+... .+ .+. .++.. ...+.+++.||+++.++.|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998764 6799998776421 11 111 11111 13345677899999999999
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+++.. .+ .+.+ ++..+.+|.+|+|+|.+|...
T Consensus 83 ~id~~--~~--~v~~-~~~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDAE--AQ--VVKS-QGNQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEECC--CC--EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence 99753 22 3444 566899999999999998643
No 129
>PRK10262 thioredoxin reductase; Provisional
Probab=98.22 E-value=2.1e-05 Score=75.58 Aligned_cols=100 Identities=19% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC---cc--------ccc----ccCHHHHHHHHHHHHhCCcEEEcCc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKGA 196 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~---~~--------l~~----~~~~~~~~~~~~~l~~~gv~i~~~~ 196 (414)
+.++|+|||||+.|+.+|..|+++|.++++++... .+ ++. ...+.+.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 56889999999999999999999999999887431 11 010 112345666777777788888775
Q ss_pred eEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997 197 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 197 ~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (414)
.+..++.. ++. ..+..++ ..+.+|.||+|+|..|..
T Consensus 84 ~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence 46667643 222 2333333 368999999999999863
No 130
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.21 E-value=1.2e-05 Score=81.05 Aligned_cols=95 Identities=25% Similarity=0.420 Sum_probs=67.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc-----------------------------------C-----
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF-----------------------------------T----- 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~-----------------------------------~----- 174 (414)
.++|||+|+.|+.+|..++++|.+|+++++. .+-..+. +
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL 82 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence 6899999999999999999999999999974 2211100 0
Q ss_pred -------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 175 -------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 175 -------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
..+.+.+++.+++.||+++.+ ++..+.. ..+ .+ ..+|+++.+|.+|+|||.+|...
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v-~~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EV-LQDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EE-ecCCeEEEcCEEEEecCCcCCCC
Confidence 012334556677889999876 4555532 121 22 24677899999999999998643
No 131
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.20 E-value=4.3e-06 Score=84.17 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=69.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+++|..|+++|.+|+++++.+.+. + ..+++++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 45789999999999999999999999999999876541 1 014556666666778899999999875410
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCC-cCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 234 (414)
.+.+.+. ...+|.||+|+|. .|.
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 2333333 3469999999997 564
No 132
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.19 E-value=2.2e-05 Score=77.71 Aligned_cols=100 Identities=19% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------c------------c------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L------ 172 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------~------------~------ 172 (414)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 46899999999999999999999999999998743210 0 0
Q ss_pred -------cC----------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997 173 -------FT----------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228 (414)
Q Consensus 173 -------~~----------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 228 (414)
++ .++.+.+.+.+.+. +++++.+++++++..++++ + .+.+.+|+++.+|.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~-v-~v~~~~g~~~~ad~vV~A 161 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDG-V-TVFDQQGNRWTGDALIGC 161 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCc-e-EEEEcCCCEEecCEEEEC
Confidence 00 01122334444444 5999999999999854333 3 577888889999999999
Q ss_pred cCCcCC
Q 014997 229 IGAKPT 234 (414)
Q Consensus 229 ~G~~p~ 234 (414)
.|....
T Consensus 162 dG~~S~ 167 (396)
T PRK08163 162 DGVKSV 167 (396)
T ss_pred CCcChH
Confidence 998754
No 133
>PRK12831 putative oxidoreductase; Provisional
Probab=98.18 E-value=5.4e-06 Score=83.73 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=67.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCH-HHHHHHHHHHHhCCcEEEcCceEEEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLE 202 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~ 202 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +. .++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999865431 11 0222 2555556778889999999985521
Q ss_pred ecCCCcEEEEEeCCC-cEEecCEEEEccCC-cCC
Q 014997 203 AGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 234 (414)
Q Consensus 203 ~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~-~p~ 234 (414)
.+.+++. +.+.+|.||+|+|. .|.
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 24679999999998 464
No 134
>PRK08244 hypothetical protein; Provisional
Probab=98.17 E-value=2.3e-05 Score=79.98 Aligned_cols=101 Identities=22% Similarity=0.333 Sum_probs=73.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 170 (414)
..|+|||+|+.|+-+|..|++.|.+|+|+++.+.+..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 4699999999999999999999999999998632100
Q ss_pred c------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEecCEEEEccCCcCC
Q 014997 171 R------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 234 (414)
Q Consensus 171 ~------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~p~ 234 (414)
. .++ ..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|.||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 0 000 1234555666677899999999999998654443222333356 47999999999998764
No 135
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.15 E-value=2.5e-05 Score=77.43 Aligned_cols=106 Identities=26% Similarity=0.429 Sum_probs=77.7
Q ss_pred eEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc----------------------------c--------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL----------------------------Q-------------- 170 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l----------------------------~-------------- 170 (414)
+|+|||||+.|+-+|..|++.| .+|+++++.+... .
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 8999999763210 0
Q ss_pred ------c---cc---------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997 171 ------R---LF---------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226 (414)
Q Consensus 171 ------~---~~---------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 226 (414)
. .+ ...+.+.+.+.+++.|++++.+++|++++.++++ ..+.+++|+++.||.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG--VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE--EEEEECCCCEEEeCEEE
Confidence 0 00 0123445566667789999999999999765333 35778888899999999
Q ss_pred EccCCcCCChhhhhcCCc
Q 014997 227 IGIGAKPTVSPFERVGLN 244 (414)
Q Consensus 227 ~a~G~~p~~~~l~~~gl~ 244 (414)
.|.|.... +.+..++.
T Consensus 161 ~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 161 AADGARSK--LRELAGIK 176 (403)
T ss_pred EcCCCChH--HHHHcCCC
Confidence 99998764 34444554
No 136
>PRK07588 hypothetical protein; Provisional
Probab=98.15 E-value=2.5e-05 Score=77.21 Aligned_cols=98 Identities=24% Similarity=0.272 Sum_probs=71.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------c----------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R---------------------------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------~---------------------------------- 171 (414)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 689999999999999999999999999997643210 0
Q ss_pred -ccC-----------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 172 -LFT-----------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 172 -~~~-----------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
.++ ..+.+.+.+.+ ..|++++++++|++++..+++ + .+.+++|+++.+|+||-|-|...
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~-v-~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDG-V-RVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCe-E-EEEECCCCEEEeCEEEECCCCCc
Confidence 000 00111222222 347999999999999865443 3 57888999999999999999865
Q ss_pred CC
Q 014997 234 TV 235 (414)
Q Consensus 234 ~~ 235 (414)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 43
No 137
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.14 E-value=7.6e-06 Score=82.46 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHh--CCCcEEEEeeCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCceEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASIKN 200 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v~~ 200 (414)
.+++|+|||+|+.|+.+|..|++ .|.+|+|+++.+.+.... ....+...+.+.+++.+|+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999986 799999999988653210 1123444566777888999998765521
Q ss_pred EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+.+++-. ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 23333332 469999999999763
No 138
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.14 E-value=4e-05 Score=76.75 Aligned_cols=107 Identities=21% Similarity=0.371 Sum_probs=76.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------------cc--------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------------LF-------------------------- 173 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------------~~-------------------------- 173 (414)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+..+ .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999986422100 00
Q ss_pred ---------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 174 ---------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 174 ---------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
-..+.+++.+..++.|++++.++.|+++... ++.+..+. .+|.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 0012234556667789999999999998754 44443343 566789999999999984
Q ss_pred CCChhhhhcCCc
Q 014997 233 PTVSPFERVGLN 244 (414)
Q Consensus 233 p~~~~l~~~gl~ 244 (414)
. .+.+..++.
T Consensus 164 s--~l~~~lgl~ 173 (428)
T PRK10157 164 S--ILAEKLGMA 173 (428)
T ss_pred H--HHHHHcCCC
Confidence 3 445555554
No 139
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.13 E-value=3.3e-05 Score=75.94 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcE-EecCEEEEccCCcCCChhhhhcCCcc
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 245 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~-i~~D~vi~a~G~~p~~~~l~~~gl~~ 245 (414)
+...+.+.+.++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|.... .+++..|++.
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 4555666778889999999999999987665 55778888876 999999999998875 6777777665
No 140
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.13 E-value=3e-05 Score=80.16 Aligned_cols=97 Identities=29% Similarity=0.430 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------cc---ccCHHHHHHHHHHHHhCCcEEEcCceE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR---LFTPSLAQRYEQLYQQNGVKFVKGASI 198 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v 198 (414)
..|+|||||+.|+.+|..|++.|.+|+++++.. +. +. ...+++.+.+.+.+++.|++++ +..|
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 579999999999999999999999999999753 21 00 0123566677777888899986 5678
Q ss_pred EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCC
Q 014997 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 235 (414)
..+... +....+.+.++ .+.+|.+|+|+|..|..
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 888743 23335666665 58999999999998864
No 141
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.12 E-value=1.4e-05 Score=81.29 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=67.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++|+|+|+|.+|+++|..|+++|.+|+++++.+. .....+.+.+++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 578999999999999999999999999999986642 223345566888999998875432
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhh---hhcCCcc
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLNS 245 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l---~~~gl~~ 245 (414)
....+|+||+++|..|+.+++ ++.|++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 124589999999999998864 3445443
No 142
>PRK07190 hypothetical protein; Provisional
Probab=98.11 E-value=6.9e-05 Score=76.17 Aligned_cols=98 Identities=19% Similarity=0.341 Sum_probs=73.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------ccc-
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QRL- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~~- 172 (414)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+. ...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999999999999773210 000
Q ss_pred ---------cC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997 173 ---------FT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 173 ---------~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (414)
+. ..+...+.+.+++.|++++.++++++++.++++. .+.+.+|+++.|+.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v--~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGC--LTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCee--EEEECCCcEEEeCEEEECCCC
Confidence 00 0122334455677899999999999998765543 345677888999999999998
Q ss_pred cC
Q 014997 232 KP 233 (414)
Q Consensus 232 ~p 233 (414)
+.
T Consensus 164 ~S 165 (487)
T PRK07190 164 RS 165 (487)
T ss_pred CH
Confidence 54
No 143
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.11 E-value=9.4e-06 Score=82.11 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=69.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999999887542 1 1135566666667889999999999866211
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.+++ ....+|.||+|+|..+.
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999999874
No 144
>PRK06116 glutathione reductase; Validated
Probab=98.11 E-value=1.9e-05 Score=79.62 Aligned_cols=94 Identities=26% Similarity=0.458 Sum_probs=65.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----cc-------------------------------C-H-
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF-------------------------------T-P- 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~-------------------------------~-~- 175 (414)
-.++|||+|+.|+.+|..|+++|.+|+++++. .+... +. + .
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 46999999999999999999999999999975 22000 00 0 0
Q ss_pred ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
.+.+.+.+.+++.||+++.+. +..+.. . .|.+ +|+++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~~---~---~v~~-~g~~~~~d~lViATGs~p~~p 146 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVDA---H---TVEV-NGERYTADHILIATGGRPSIP 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEccC---C---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 011223344667899999874 444431 2 4455 677899999999999998644
No 145
>PRK05868 hypothetical protein; Validated
Probab=98.10 E-value=3.7e-05 Score=75.55 Aligned_cols=100 Identities=23% Similarity=0.235 Sum_probs=71.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~------------------------------------------- 170 (414)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999997732200
Q ss_pred --cccC-H----H--------HHHHHHHHHH---hCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 171 --RLFT-P----S--------LAQRYEQLYQ---QNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 171 --~~~~-~----~--------~~~~~~~~l~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
.... . . ....+.+.+. ..|+++++++++++++.+++ . ..+.+.+|+++.+|+||-|-|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~-~-v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGD-S-VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCC-e-EEEEECCCCeEEeCEEEECCCCC
Confidence 0000 0 0 0112223222 35899999999999975433 2 35788999999999999999986
Q ss_pred CCC
Q 014997 233 PTV 235 (414)
Q Consensus 233 p~~ 235 (414)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 543
No 146
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.10 E-value=3.8e-05 Score=76.35 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc----------c--------------c------cc-----c------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------L--------------L------QR-----L------ 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~----------~--------------l------~~-----~------ 172 (414)
.+|+|||||+.|+-+|..|++.|.+|+++++.+. . + +. .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 4699999999999999999999999999997641 0 0 00 0
Q ss_pred ------------cC---------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEE
Q 014997 173 ------------FT---------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225 (414)
Q Consensus 173 ------------~~---------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 225 (414)
++ ..+.+.+.+.+++.|++++.++++.+++.++++ ..|.+.+|+++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 011223344456678999999999999865444 2577888989999999
Q ss_pred EEccCCcCC
Q 014997 226 VIGIGAKPT 234 (414)
Q Consensus 226 i~a~G~~p~ 234 (414)
|.|.|....
T Consensus 161 VgAdG~~S~ 169 (405)
T PRK05714 161 VAADGANSA 169 (405)
T ss_pred EEecCCCch
Confidence 999998654
No 147
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.09 E-value=1.9e-05 Score=78.73 Aligned_cols=92 Identities=12% Similarity=0.189 Sum_probs=62.1
Q ss_pred CCCeEEEECCChHHHHHHHHHH-hCCCcEEEEeeCCcccccc---cC------HHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQRL---FT------PSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~-~~g~~Vtlv~~~~~~l~~~---~~------~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
.+++|+|||+|+.|+.+|..|. +.|++|+++++.+.+..-. .. +.+...+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 5689999999999999999764 6799999999998763210 11 23444555556667888885543311
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+..++= .-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~eeL-~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEEL-RNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHHH-HhcCCEEEEEcCCCCC
Confidence 1111111 2368999999998853
No 148
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.09 E-value=3.9e-05 Score=77.18 Aligned_cols=57 Identities=32% Similarity=0.588 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.+.+.+..+++||+++.++ |..+..+++|.+..|.+++|+++.+|.+|-|+|++..
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 55677777888999999885 7777767788899999999999999999999998754
No 149
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.09 E-value=4.3e-05 Score=75.20 Aligned_cols=97 Identities=21% Similarity=0.338 Sum_probs=71.8
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCccccc--------ccC-------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------LFT------------------------------- 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~--------~~~------------------------------- 174 (414)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999976321000 000
Q ss_pred ------------------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997 175 ------------------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 229 (414)
Q Consensus 175 ------------------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 229 (414)
..+.+.+.+.+.+ .|++++.+++++++..++++ ..+.+++|+++.||.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 1123334444555 49999999999999765443 25677888889999999999
Q ss_pred CCcC
Q 014997 230 GAKP 233 (414)
Q Consensus 230 G~~p 233 (414)
|...
T Consensus 159 G~~S 162 (382)
T TIGR01984 159 GANS 162 (382)
T ss_pred CCCh
Confidence 9764
No 150
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.08 E-value=9.4e-05 Score=65.10 Aligned_cols=138 Identities=22% Similarity=0.340 Sum_probs=87.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------cccc---------------------------CH
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------QRLF---------------------------TP 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------~~~~---------------------------~~ 175 (414)
...|+|||+|++|+.+|.+|++.|.+|.+++++-.+- +... +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 4679999999999999999999999999999874331 1000 01
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCCh-hh-hhc-
Q 014997 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTVS-PF-ERV- 241 (414)
Q Consensus 176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-~l-~~~- 241 (414)
++...+....-+.|.+++.+..|..+--.++.++..+... |--.++++.||-+||.....- ++ +..
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 1222333334567899999999988764434356555542 234689999999999976532 22 221
Q ss_pred --CCccc-CC--------CEEEcCCCCCCCCcEEEEccccc
Q 014997 242 --GLNSS-VG--------GIQVDGQFRTRMPGIFAIGDVAA 271 (414)
Q Consensus 242 --gl~~~-~g--------~i~vd~~~~t~~~~IyA~GD~a~ 271 (414)
++... .+ ...|+.+.+ -+||+|++|=.+.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~ 229 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVN 229 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhcccc-ccCCeEeehhhHH
Confidence 22211 01 122222222 4799999997765
No 151
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.08 E-value=1.1e-05 Score=86.44 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=69.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +. .++.++.....+.+++.||+|++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46799999999999999999999999999999865431 10 12445555556678889999999875410
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCC-cCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~-~p~ 234 (414)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 464
No 152
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.08 E-value=1.1e-05 Score=81.86 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=67.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+++|..|++.|.+|+++++.+++. +. .+++++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999887642 11 134556656667788899999999876311
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
+. .++....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 011235799999999997
No 153
>PRK06184 hypothetical protein; Provisional
Probab=98.07 E-value=5.1e-05 Score=77.64 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=73.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------------------c--
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-- 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~-- 171 (414)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 4799999999999999999999999999998622100 0
Q ss_pred ---------------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCcEEecCEEE
Q 014997 172 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 226 (414)
Q Consensus 172 ---------------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi 226 (414)
.++ ..+.+.+.+.+++.|++++.++++++++.++++. .+.+ ++++++.+|.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v--~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGV--TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcE--EEEEEeCCCeEEEEeCEEE
Confidence 000 1123455666777899999999999998665543 3344 556789999999
Q ss_pred EccCCcC
Q 014997 227 IGIGAKP 233 (414)
Q Consensus 227 ~a~G~~p 233 (414)
.|.|...
T Consensus 162 gADG~~S 168 (502)
T PRK06184 162 GADGGRS 168 (502)
T ss_pred ECCCCch
Confidence 9999865
No 154
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.07 E-value=1.5e-05 Score=86.21 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=65.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 204 (414)
+++|+|||||+.|+.+|..|+++|.+|+|+++.+.+... .++.+......+.+.+.||+++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEeccc------
Confidence 578999999999999999999999999999987654211 123344444456678889999987421
Q ss_pred CCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 205 SDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 205 ~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+.+.+.+...+|.||+|+|..+.
T Consensus 611 ------d~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 611 ------DLTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred ------ceEhhhhhcccccEEEECCCCCCC
Confidence 112223334668999999998754
No 155
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.06 E-value=5.6e-05 Score=76.56 Aligned_cols=99 Identities=27% Similarity=0.427 Sum_probs=66.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----ccc---------------------------------CH
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RLF---------------------------------TP 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~~~---------------------------------~~ 175 (414)
++++|||+|+.|+++|..++++|.+|+++++.. +-. .+. +.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDL 80 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCH
Confidence 579999999999999999999999999999763 100 000 00
Q ss_pred -H-----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997 176 -S-----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 176 -~-----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~ 234 (414)
. ....+.+.+++.||+++.+. +..++.+.+.....|.+.+|+ ++.+|.||+|||.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~-~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 81 PAVNARVKALAAAQSADIRARLEREGVRVIAGR-GRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 0 01234455677899998875 333221112222355666775 7999999999999986
No 156
>PRK09126 hypothetical protein; Provisional
Probab=98.06 E-value=4.8e-05 Score=75.17 Aligned_cols=100 Identities=24% Similarity=0.373 Sum_probs=72.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c------------------------c-----------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q------------------------R----------- 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~------------------------~----------- 171 (414)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+- . .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999864310 0 0
Q ss_pred --------ccCH---------------HHHHHHHHHH-HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997 172 --------LFTP---------------SLAQRYEQLY-QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227 (414)
Q Consensus 172 --------~~~~---------------~~~~~~~~~l-~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 227 (414)
.++. .+.+.+.+.+ +..|++++.++++++++.++++ ..|.+++|+++.+|.||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG--AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe--EEEEEcCCCEEEeCEEEE
Confidence 0000 0111222222 3468999999999999765333 357788899999999999
Q ss_pred ccCCcCCC
Q 014997 228 GIGAKPTV 235 (414)
Q Consensus 228 a~G~~p~~ 235 (414)
|.|.....
T Consensus 162 AdG~~S~v 169 (392)
T PRK09126 162 ADSRFSAT 169 (392)
T ss_pred eCCCCchh
Confidence 99987653
No 157
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.06 E-value=5.9e-05 Score=74.53 Aligned_cols=99 Identities=31% Similarity=0.395 Sum_probs=75.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Cccccc----------------------------------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQR---------------------------------------- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~l~~---------------------------------------- 171 (414)
..+|+|||||+.|+-+|..|++.|.+|+|+++. ..+.+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999999999999999986 111000
Q ss_pred -------------------ccCHHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeC-CCcEEecCEEEEccC
Q 014997 172 -------------------LFTPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIG 230 (414)
Q Consensus 172 -------------------~~~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~-~g~~i~~D~vi~a~G 230 (414)
.--..+.+.+.+.+.+.+ |+++.+++|+.++.+++ .+. ++++ +|+++.||++|-|-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-GVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-ceE-EEEcCCCcEEecCEEEECCC
Confidence 000124455666666665 99999999999987643 333 7777 999999999999999
Q ss_pred CcC
Q 014997 231 AKP 233 (414)
Q Consensus 231 ~~p 233 (414)
...
T Consensus 160 ~~S 162 (387)
T COG0654 160 ANS 162 (387)
T ss_pred Cch
Confidence 754
No 158
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.05 E-value=3.6e-05 Score=74.43 Aligned_cols=100 Identities=29% Similarity=0.378 Sum_probs=70.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-----------------------------------------c---
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------------------------------Q--- 170 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----------------------------------------~--- 170 (414)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+. .
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 68999999999999999999999999999872210 0
Q ss_pred -----------cc------------c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CC--cEEecC
Q 014997 171 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DG--STIDAD 223 (414)
Q Consensus 171 -----------~~------------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g--~~i~~D 223 (414)
.. + -..+.+.+.+.+++.|++++.++++..+..+.++....+... +| +++.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 00 0 023556677777888999999999999886655433233333 34 369999
Q ss_pred EEEEccCCcCC
Q 014997 224 TIVIGIGAKPT 234 (414)
Q Consensus 224 ~vi~a~G~~p~ 234 (414)
+||-|-|....
T Consensus 163 lvVgADG~~S~ 173 (356)
T PF01494_consen 163 LVVGADGAHSK 173 (356)
T ss_dssp EEEE-SGTT-H
T ss_pred eeecccCcccc
Confidence 99999998764
No 159
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.04 E-value=6.2e-05 Score=74.07 Aligned_cols=98 Identities=28% Similarity=0.361 Sum_probs=72.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c--ccC-------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--LFT------------------------------- 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~--~~~------------------------------- 174 (414)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999998753100 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997 175 -------------------------PSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228 (414)
Q Consensus 175 -------------------------~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 228 (414)
..+.+.+.+.+.+.| ++++.+++|++++..++ .+ .+.+++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-~~-~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-HV-ELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-ee-EEEECCCCEEEeeEEEEe
Confidence 012233444456666 99999999999976533 33 577889989999999999
Q ss_pred cCCcCC
Q 014997 229 IGAKPT 234 (414)
Q Consensus 229 ~G~~p~ 234 (414)
.|....
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 998653
No 160
>PRK09897 hypothetical protein; Provisional
Probab=98.04 E-value=0.00067 Score=69.36 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=57.4
Q ss_pred CeEEcCCcEEEEeCCCC--EEEeCC-CcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEE
Q 014997 61 IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 137 (414)
Q Consensus 61 i~~~~~~~V~~id~~~~--~V~~~~-g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vv 137 (414)
+.++.+++|++++.... .|++.+ |..+.+|+||+|||..+...+ .+ .++ ++.+..+.. ..... .+.+|+
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~p~~~--~~--~~~--yi~~pw~~~-~~~~i-~~~~V~ 195 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEE--EA--TRT--YFPSPWSGL-MEAKV-DACNVG 195 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCCCCCC--hh--hcc--ccCCCCcch-hhcCC-CCCeEE
Confidence 67888889999987654 455544 467999999999997532111 11 111 222222221 11222 368999
Q ss_pred EECCChHHHHHHHHHHhC
Q 014997 138 VVGGGYIGMEVAAAAVGW 155 (414)
Q Consensus 138 VvGgG~~g~e~A~~l~~~ 155 (414)
|+|.|.++++++..|..+
T Consensus 196 I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 196 IMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred EECCCHHHHHHHHHHHhc
Confidence 999999999999998765
No 161
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.02 E-value=6.7e-05 Score=74.01 Aligned_cols=98 Identities=26% Similarity=0.337 Sum_probs=73.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------------------ccc--------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RLF-------------------- 173 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~~-------------------- 173 (414)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. +.+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999997744211 000
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEc
Q 014997 174 ------------------------TPSLAQRYEQLYQQNG-VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 228 (414)
Q Consensus 174 ------------------------~~~~~~~~~~~l~~~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a 228 (414)
...+.+.+.+.+++.| ++++ +.+++++...+++ ..+.+.+|+++.+|.+|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 0122334555566776 9999 8889998755343 3577888888999999999
Q ss_pred cCCcCC
Q 014997 229 IGAKPT 234 (414)
Q Consensus 229 ~G~~p~ 234 (414)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 998653
No 162
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.02 E-value=6.4e-05 Score=74.88 Aligned_cols=100 Identities=24% Similarity=0.349 Sum_probs=69.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----cc-------------------------------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR------------------------------------- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----~~------------------------------------- 171 (414)
..+|+|||||+.|+-+|..|++.|.+|+|+++.+.+- .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 3579999999999999999999999999999763210 00
Q ss_pred -----ccC---------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCC--C-cEEecCEEEE
Q 014997 172 -----LFT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLED--G-STIDADTIVI 227 (414)
Q Consensus 172 -----~~~---------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~--g-~~i~~D~vi~ 227 (414)
.++ ..+.+.+.+.+.+. |++++.++++++++.++++. .+.+.+ + .++.||+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~--~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAA--TVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCee--EEEEccCCcceEEeeeEEEE
Confidence 000 11222333334443 79999999999997654432 455543 2 3699999999
Q ss_pred ccCCcCC
Q 014997 228 GIGAKPT 234 (414)
Q Consensus 228 a~G~~p~ 234 (414)
|.|....
T Consensus 176 ADG~~S~ 182 (415)
T PRK07364 176 ADGARSP 182 (415)
T ss_pred eCCCCch
Confidence 9998764
No 163
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.01 E-value=8.9e-05 Score=76.72 Aligned_cols=102 Identities=22% Similarity=0.292 Sum_probs=72.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------c------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------L------ 172 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~------ 172 (414)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999977422000 0
Q ss_pred -------------------c-CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccC
Q 014997 173 -------------------F-TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIG 230 (414)
Q Consensus 173 -------------------~-~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G 230 (414)
+ ...+.+.+.+.+++. ++++++++++++++.++++....+...+|+ ++.+|.||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 001223344445554 799999999999987655433334444554 699999999999
Q ss_pred CcCC
Q 014997 231 AKPT 234 (414)
Q Consensus 231 ~~p~ 234 (414)
....
T Consensus 183 ~~S~ 186 (547)
T PRK08132 183 ARSP 186 (547)
T ss_pred CCcH
Confidence 8765
No 164
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.01 E-value=8.1e-05 Score=73.77 Aligned_cols=108 Identities=18% Similarity=0.263 Sum_probs=80.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------ccc-----------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QRL----------------------- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------~~~----------------------- 172 (414)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+- +..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 369999999999999999999999999999873320 000
Q ss_pred --------c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997 173 --------F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243 (414)
Q Consensus 173 --------~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl 243 (414)
+ -..+.+++.+..++.|.+++.++.+..+..++++.+..+ ..++.++.++.||.|.|.... +.+.+++
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~--l~~~lg~ 160 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA--LARKLGL 160 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH--HHHHhCC
Confidence 0 112445677778889999999999999987766655443 344478999999999997653 4444444
Q ss_pred c
Q 014997 244 N 244 (414)
Q Consensus 244 ~ 244 (414)
.
T Consensus 161 ~ 161 (396)
T COG0644 161 K 161 (396)
T ss_pred C
Confidence 4
No 165
>PRK08013 oxidoreductase; Provisional
Probab=98.01 E-value=7.1e-05 Score=74.30 Aligned_cols=99 Identities=25% Similarity=0.328 Sum_probs=72.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------c--------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------R-------------- 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------~-------------- 171 (414)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999997643100 0
Q ss_pred ---------ccC---------------HHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997 172 ---------LFT---------------PSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226 (414)
Q Consensus 172 ---------~~~---------------~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 226 (414)
.++ ..+.+.+.+.+++. ||+++.++++++++.++++ ..+.+.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 000 01122233334443 7999999999999765443 35678899999999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
-|-|....
T Consensus 162 gADG~~S~ 169 (400)
T PRK08013 162 GADGANSW 169 (400)
T ss_pred EeCCCCcH
Confidence 99998654
No 166
>PRK06753 hypothetical protein; Provisional
Probab=98.00 E-value=5.2e-05 Score=74.40 Aligned_cols=98 Identities=13% Similarity=0.214 Sum_probs=69.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----ccCHH----------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPS---------------------------------- 176 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----~~~~~---------------------------------- 176 (414)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-.. .+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999987532100 00000
Q ss_pred --------------HHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 177 --------------LAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 177 --------------~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
-...+.+.|.+ .+.++++++++++++.++ +. ..+.+++|+++.+|+||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENET-DK-VTIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecC-Cc-EEEEECCCCEEecCEEEECCCcchH
Confidence 00112233322 246788999999998543 33 3577889999999999999997654
No 167
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.00 E-value=6.5e-05 Score=75.57 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=64.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-cc-----ccCH-----------HHH----------HHH----H
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QR-----LFTP-----------SLA----------QRY----E 182 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-~~-----~~~~-----------~~~----------~~~----~ 182 (414)
-.|+|||||+.|+.+|..|+++|.+|+++++.+..+ .. +.+. ++. ..+ .
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF 83 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence 479999999999999999999999999999875321 10 1111 110 111 1
Q ss_pred HHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCCCh
Q 014997 183 QLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 183 ~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 236 (414)
+.+.+ .|++++.+. +..+. .+. ..|.+.+|. ++.+|.+|+|+|.+|...
T Consensus 84 ~~~~~~~gv~~~~g~-~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 84 HNLADMPNIDVIDGQ-AEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHhhcCCcEEEEEE-EEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 12333 389988763 44443 222 355666775 699999999999998643
No 168
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.99 E-value=1.9e-05 Score=86.60 Aligned_cols=93 Identities=25% Similarity=0.316 Sum_probs=68.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+|+++.+.+.. . .++.++.....+.+++.||++++++.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~--- 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK--- 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence 357999999999999999999999999999998765421 1 13456667777788999999999865410
Q ss_pred cCCCcEEEEEeCCC-cEEecCEEEEccCCc-CC
Q 014997 204 GSDGRVAAVKLEDG-STIDADTIVIGIGAK-PT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g-~~i~~D~vi~a~G~~-p~ 234 (414)
.+.+.+- ....+|.||+|+|.. |.
T Consensus 506 -------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 124589999999984 54
No 169
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.99 E-value=0.00011 Score=75.19 Aligned_cols=138 Identities=21% Similarity=0.286 Sum_probs=84.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------c---
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------F--- 173 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~--- 173 (414)
.|+|+|||+|.+|+-.|..|.+.|.+++++++.+.+..-+ .
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 3799999999999999999999999999999885431100 0
Q ss_pred --CHHHHHHHHHHHHhCCc--EEEcCceEEEEEecCCC---cEEEEEeC-CCc--EEecCEEEEccCCc--CCChhhhhc
Q 014997 174 --TPSLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDG---RVAAVKLE-DGS--TIDADTIVIGIGAK--PTVSPFERV 241 (414)
Q Consensus 174 --~~~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~---~~~~v~~~-~g~--~i~~D~vi~a~G~~--p~~~~l~~~ 241 (414)
..++.++++...+..++ .+.++++|.+++..++. ..-.|.+. +|+ +-.+|.||+|+|.- |+.+.-.-.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 13577788888887777 58899999999875442 12245554 342 45689999999974 543320112
Q ss_pred CCcccCCCEEEcCCCCC----CCCcEEEEcccc
Q 014997 242 GLNSSVGGIQVDGQFRT----RMPGIFAIGDVA 270 (414)
Q Consensus 242 gl~~~~g~i~vd~~~~t----~~~~IyA~GD~a 270 (414)
|++.=.|.+.=...++. ...+|-.+|-..
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 33322344544444443 346788888543
No 170
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.99 E-value=7.1e-05 Score=75.72 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=66.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCHH--------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS-------------------------------- 176 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~~-------------------------------- 176 (414)
..|+|||+|+.|+.+|..|+++|.+|+++++.+.+...+ .+..
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 479999999999999999999999999999864431110 1100
Q ss_pred ----------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCC
Q 014997 177 ----------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV 235 (414)
Q Consensus 177 ----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~ 235 (414)
..+.+.+.+++.||+++.+. +..+. .+. ..+...+|+ ++.+|.+|+|+|.+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~ 151 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFVD---PHT-VEVECPDGEVETLTADKIVIATGSRPYR 151 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEec---CCE-EEEEeCCCceEEEEcCEEEEcCCCCCCC
Confidence 01123344667899998874 33332 222 245556664 79999999999999864
No 171
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.98 E-value=4.9e-05 Score=76.36 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=63.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc------ccC--------------HHH-----------HHHHH
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFT--------------PSL-----------AQRYE 182 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------~~~--------------~~~-----------~~~~~ 182 (414)
-+|+|||+|+.|+.+|..|+++|.+|+++++.+.++.. +.+ +++ .....
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY 83 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999987532110 011 011 11122
Q ss_pred HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCCCh
Q 014997 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~~~ 236 (414)
+.+++.||+++.+.. .+. ++.. ..+...+ ..++.+|.||+|||.+|...
T Consensus 84 ~~~~~~gV~~~~g~~--~~~--~~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 84 AMLAGSGVDLYDAEA--HFV--SNKV-IEVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred HHHHhCCCEEEEEEE--EEc--cCCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 446778899887653 222 1222 1233222 24799999999999998643
No 172
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.98 E-value=9e-05 Score=73.23 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=73.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------------------------------cc-------c--
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------LQ-------R-- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------------------------l~-------~-- 171 (414)
.-+|+|||||+.|+-+|..|++.|.+|+++++.+.. .. +
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 357999999999999999999999999999976410 00 0
Q ss_pred ---c------c---------------CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997 172 ---L------F---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226 (414)
Q Consensus 172 ---~------~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 226 (414)
. + ...+.+.+.+.+++. |++++.+++++++...+++ ..+.+++|+++.+|.||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 0 0 001223344444555 9999999999999755443 35677888899999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
.|.|....
T Consensus 163 ~AdG~~S~ 170 (391)
T PRK08020 163 GADGANSQ 170 (391)
T ss_pred EeCCCCch
Confidence 99998764
No 173
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.98 E-value=4.3e-06 Score=74.33 Aligned_cols=129 Identities=26% Similarity=0.423 Sum_probs=83.6
Q ss_pred CCCcEEEEcCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCEE--
Q 014997 2 ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL-- 79 (414)
Q Consensus 2 ~~g~I~vi~~e~~~pY~rp~Ls~~~l~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~V-- 79 (414)
+..+|++|++++..+|.++.++...+........... ... ..+..+.+...+++++++++|.+|+...+.+
T Consensus 21 ~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~ 93 (201)
T PF07992_consen 21 PGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFL------PAR-LFKLVDQLKNRGVEIRLNAKVVSIDPESKRVVC 93 (201)
T ss_dssp TTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHH------HHH-HGHHHHHHHHHTHEEEHHHTEEEEEESTTEEEE
T ss_pred CCCeEEEEecccccccccccccccccccccccccccc------ccc-ccccccccccceEEEeecccccccccccccccc
Confidence 4578999988888888777776644321000000000 000 0012233467899998889999999988842
Q ss_pred --------EeCCCcEEecCeEEEccCCCCCCCCCCCCCCCCCEEEecCHHHHHHHHHhhcCCCeEEEEC
Q 014997 80 --------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 140 (414)
Q Consensus 80 --------~~~~g~~~~yd~LviAtG~~~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVvG 140 (414)
...++.++.||+||||||+.+.. |.++|. +.....++..++..+.......++++|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 94 PAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp TCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred CcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccccccccccccccc
Confidence 23456689999999999998764 444553 22233456677888887777777999999
No 174
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.98 E-value=7e-05 Score=76.01 Aligned_cols=100 Identities=22% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc--------------------------c-------CHH---
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------F-------TPS--- 176 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~--------------------------~-------~~~--- 176 (414)
..+++|||+|+.|+.+|..|+++|.+|.++++. .+-..+ + ..+
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 457999999999999999999999999999975 210000 0 001
Q ss_pred -----------HHHHHHHHHHhCCcEEEcCceEEEEEec---CCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997 177 -----------LAQRYEQLYQQNGVKFVKGASIKNLEAG---SDGRVAAVKLEDG--STIDADTIVIGIGAKPT 234 (414)
Q Consensus 177 -----------~~~~~~~~l~~~gv~i~~~~~v~~i~~~---~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 234 (414)
+.....+.+++.||+++.+. ++.+... ++.....|.+.+| +++.+|.+|+|+|.+|.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~ 155 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV 155 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC
Confidence 11122344567799999874 4444321 0111335666776 47999999999999986
No 175
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.97 E-value=9.4e-05 Score=72.99 Aligned_cols=100 Identities=23% Similarity=0.322 Sum_probs=71.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc--cc---c---c--ccCH----------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--LL---Q---R--LFTP---------------------------- 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--~l---~---~--~~~~---------------------------- 175 (414)
.+|+|||||+.|+-+|..|++.|.+|+++++.+. +. . + .+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999996531 00 0 0 0000
Q ss_pred ---------------------------HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEE
Q 014997 176 ---------------------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 227 (414)
Q Consensus 176 ---------------------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~ 227 (414)
.+...+.+.+++ .|++++.++++++++.++++ ..+.+.+|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 000111122223 47999999999999865444 357888999999999999
Q ss_pred ccCCcCCC
Q 014997 228 GIGAKPTV 235 (414)
Q Consensus 228 a~G~~p~~ 235 (414)
|.|.....
T Consensus 162 ADG~~S~v 169 (384)
T PRK08849 162 ADGANSQV 169 (384)
T ss_pred ecCCCchh
Confidence 99997754
No 176
>PLN02697 lycopene epsilon cyclase
Probab=97.96 E-value=9.8e-05 Score=75.35 Aligned_cols=98 Identities=23% Similarity=0.382 Sum_probs=70.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------------------------------- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~----------------------------------------- 172 (414)
-.|+|||+|+.|+.+|..|++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 479999999999999999999999999998642211000
Q ss_pred cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 173 FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 173 ~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
++ ..+.+.+.+.+.+.|+++ .++.|+++...+++ ...+.+.+|.++.++.||.|.|...
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 122344555567779998 56789998755343 3334567888999999999999876
No 177
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.94 E-value=0.0001 Score=73.22 Aligned_cols=100 Identities=25% Similarity=0.387 Sum_probs=71.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Cc-------------c-------c------ccc-------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NH-------------L-------L------QRL------------- 172 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~-------------~-------l------~~~------------- 172 (414)
..+|+|||||+.|+-+|..|++.|.+|+++++. +. + + +..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999974 11 0 0 000
Q ss_pred ----------cC---------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEE
Q 014997 173 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 226 (414)
Q Consensus 173 ----------~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi 226 (414)
++ ..+...+.+.+.+ .|++++.++++++++.++++ ..+.+++|+++.||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 00 0011223333334 47999999999999765433 36788899999999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
.|.|....
T Consensus 162 gADG~~S~ 169 (405)
T PRK08850 162 GADGANSW 169 (405)
T ss_pred EeCCCCCh
Confidence 99997553
No 178
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.94 E-value=2.9e-05 Score=78.74 Aligned_cols=91 Identities=20% Similarity=0.314 Sum_probs=67.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+... .++.++.....+.+++.||++++++.+.. .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 3579999999999999999999999999999988765211 13445555566778889999999886531 0
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+.. +.....+|.||+|+|..+
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111257999999999973
No 179
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.93 E-value=9.4e-05 Score=75.01 Aligned_cols=96 Identities=26% Similarity=0.362 Sum_probs=64.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCH-------------------------------HH
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTP-------------------------------SL 177 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~-------------------------------~~ 177 (414)
..++|||+|+.|+.+|..++++|.+|+++++.+.+...+ .+. .+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 579999999999999999999999999999864331100 110 11
Q ss_pred H-----------HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCC
Q 014997 178 A-----------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPT 234 (414)
Q Consensus 178 ~-----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~ 234 (414)
. ..+...+++.||+++.+.. . +. +.....|...+| +++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a-~-~~---~~~~v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLG-K-FT---GGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-E-Ec---cCCEEEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 0 1112335667999987642 2 22 122224555566 47999999999999985
No 180
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.93 E-value=2.5e-05 Score=82.18 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=69.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------ccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +..+++.+.....+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 47899999999999999999999999999999887642 1124556666666788999999999986521
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+.+.+ ....+|.|++++|..+.
T Consensus 386 -------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 111222 13468999999998653
No 181
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.92 E-value=0.00039 Score=68.44 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=95.2
Q ss_pred hCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCC
Q 014997 154 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGA 231 (414)
Q Consensus 154 ~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~ 231 (414)
..|+.|.-+-. +-|...+..+.+.+.+.+++.|++++.++.|.++... ++.+..+.+.++ ..+.+|.+|+|+|.
T Consensus 245 ~~g~~v~E~pt---lPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGa 320 (419)
T TIGR03378 245 ATGLTLCELPT---MPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGS 320 (419)
T ss_pred HHCCCEEeCCC---CCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCC
Confidence 34666665432 2233456788888999999999999999999998754 455666776665 47999999999998
Q ss_pred cCCChhhhhc--------CCcc--------------------cCCCEEEcCCCCC-----CCCcEEEEccccccCCccCC
Q 014997 232 KPTVSPFERV--------GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYD 278 (414)
Q Consensus 232 ~p~~~~l~~~--------gl~~--------------------~~g~i~vd~~~~t-----~~~~IyA~GD~a~~~~~~~~ 278 (414)
--...++++. +++. ..-||.+|+++|. -.+|+||+|-+....++..-
T Consensus 321 w~S~gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~ 400 (419)
T TIGR03378 321 FFSNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFE 400 (419)
T ss_pred CcCHHHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhc
Confidence 7222443322 2221 1127899999983 38999999999887765321
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 014997 279 RTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 279 ~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.- -...|...|..||++|+
T Consensus 401 gc----G~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 401 GC----GSGVAVSTALHAAEQII 419 (419)
T ss_pred CC----CchhHHHHHHHHHHhhC
Confidence 10 11247777777777663
No 182
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.92 E-value=0.00014 Score=71.82 Aligned_cols=97 Identities=22% Similarity=0.309 Sum_probs=70.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------c--------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------L-------------- 172 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------~-------------- 172 (414)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976432100 0
Q ss_pred -c-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 173 -F-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 173 -~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+ ...+.+.+.+.+.+.|++++. ..+..+...+ +....+.+++|+++.|+.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 012334455556677898874 5677776542 333457778888899999999999876
No 183
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.91 E-value=0.0001 Score=75.63 Aligned_cols=96 Identities=24% Similarity=0.360 Sum_probs=69.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC-cccc-------------------c----------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HLLQ-------------------R---------------------- 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~-~~l~-------------------~---------------------- 171 (414)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+.. .
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 469999999999999999999999999998862 1100 0
Q ss_pred -----------ccCH-HHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997 172 -----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 172 -----------~~~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (414)
.++. .+...+.+.+++. |++++. ..+.++..+ ++.+..|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e-~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVE-NGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEec-CCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0000 0123344444544 788864 567777543 56777889999999999999999994
No 184
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=97.91 E-value=0.00014 Score=71.89 Aligned_cols=58 Identities=24% Similarity=0.353 Sum_probs=41.9
Q ss_pred HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243 (414)
Q Consensus 182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl 243 (414)
.+.+++.|++++.++.|.++...++ .+ .|.+.+| ++.||.||+|+|.... .+++..|+
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~~~-~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEHAN-GV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEecCC-eE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 3444677999999999999875433 33 5667766 7999999999998764 45554444
No 185
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.90 E-value=0.00015 Score=71.86 Aligned_cols=99 Identities=16% Similarity=0.238 Sum_probs=69.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------c-----------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q----------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------~----------------- 170 (414)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+. .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 789999999999999999999999999999773210 0
Q ss_pred ccc-------------------C-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEe---CCCcEEecCEEE
Q 014997 171 RLF-------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIV 226 (414)
Q Consensus 171 ~~~-------------------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~~i~~D~vi 226 (414)
..+ . ..+.+.+.+.+.+ .|+++++++++++++..+++ + .+.+ .+++.+.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~-v-~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS-I-TATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc-e-EEEEEeCCCCcEEecCEEE
Confidence 000 0 1122334444444 47999999999999865433 2 3333 344679999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
-|-|....
T Consensus 161 gADG~~S~ 168 (400)
T PRK06475 161 ACDGVWSM 168 (400)
T ss_pred ECCCccHh
Confidence 99998653
No 186
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.90 E-value=0.00013 Score=75.23 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=71.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc----------------------------------------c-
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~----------------------------------------~- 171 (414)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 46799999999999999999999999999998732100 0
Q ss_pred ---ccC-----------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeC--CC--cEEecCEEE
Q 014997 172 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIV 226 (414)
Q Consensus 172 ---~~~-----------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~--~g--~~i~~D~vi 226 (414)
.++ +.+.+.+.+.+.+ .|++++.++++++++.++++. .+.+. +| +++.+|.||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v--~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGV--TVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeE--EEEEEcCCCCEEEEEEEEEE
Confidence 000 1122334444444 489999999999998765553 34443 56 479999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
-|.|....
T Consensus 168 gADG~~S~ 175 (538)
T PRK06183 168 GCDGANSF 175 (538)
T ss_pred ecCCCchh
Confidence 99998654
No 187
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.89 E-value=0.00014 Score=71.42 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=70.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC----cc----------------ccc-----------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR----------------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~----~~----------------l~~----------------------- 171 (414)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+ +..
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 10 000
Q ss_pred ------------------ccCHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 172 ------------------LFTPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 172 ------------------~~~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
..-.++.+.+.+.+++. +++++.+++++++..++++ ..+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 00012334444545555 4899999999999765443 25677776 89999999999987
Q ss_pred CCC
Q 014997 233 PTV 235 (414)
Q Consensus 233 p~~ 235 (414)
...
T Consensus 160 S~v 162 (374)
T PRK06617 160 SKV 162 (374)
T ss_pred chh
Confidence 643
No 188
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.85 E-value=0.00012 Score=73.85 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=65.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cC-H-
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FT-P- 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~- 175 (414)
-.|+|||+|+.|+.+|..++++|.+|+++++.. +-..+ ++ +
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 469999999999999999999999999999752 11000 00 0
Q ss_pred ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
.+.+.+...+++.||+++.++.. +. ++. .|.. +|+.+.+|.+|+|+|.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~---~v~v-~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDG---TVEV-NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 11223445567789999988643 22 122 2334 456799999999999998643
No 189
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.85 E-value=0.0002 Score=70.75 Aligned_cols=106 Identities=29% Similarity=0.407 Sum_probs=73.6
Q ss_pred CeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCC-c-------------c-------------cc-------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------------LQ------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~-~-------------~-------------l~------------- 170 (414)
-+|+|||+|+.|+-+|..|++. |.+|+++++.. . + ..
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 99999999831 0 0 00
Q ss_pred ---c------ccC---------------HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEE
Q 014997 171 ---R------LFT---------------PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 225 (414)
Q Consensus 171 ---~------~~~---------------~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~v 225 (414)
. .+. ..+.+.+.+.+.+ .|++++.+++++++...+++ + .+.+++|..+.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS-V-RVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe-E-EEEECCCCEEEeCEE
Confidence 0 000 0112233444444 47999999999999754333 2 477788888999999
Q ss_pred EEccCCcCCChhhhhcCC
Q 014997 226 VIGIGAKPTVSPFERVGL 243 (414)
Q Consensus 226 i~a~G~~p~~~~l~~~gl 243 (414)
|.|.|.... +.+..++
T Consensus 162 I~AdG~~S~--vr~~~~~ 177 (395)
T PRK05732 162 VAADGSHSA--LREALGI 177 (395)
T ss_pred EEecCCChh--hHHhhCC
Confidence 999998764 3344444
No 190
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.85 E-value=0.00018 Score=71.03 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=70.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------------c--
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R-- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------------~-- 171 (414)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 35799999999999999999999999999998632100 0
Q ss_pred ------cc---------------CHHHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEcc
Q 014997 172 ------LF---------------TPSLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 229 (414)
Q Consensus 172 ------~~---------------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~ 229 (414)
.+ ...+.+.+.+.+.+. ++. +.+++|.+++.++++ + .+.+++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~-~-~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE-V-TVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe-E-EEEECCCCEEEEeEEEEec
Confidence 00 011223344445554 466 778999999765443 2 4778888899999999999
Q ss_pred CCcCC
Q 014997 230 GAKPT 234 (414)
Q Consensus 230 G~~p~ 234 (414)
|....
T Consensus 164 G~~S~ 168 (388)
T PRK07494 164 GRNSP 168 (388)
T ss_pred CCCch
Confidence 98653
No 191
>PRK06185 hypothetical protein; Provisional
Probab=97.85 E-value=0.00024 Score=70.66 Aligned_cols=109 Identities=25% Similarity=0.331 Sum_probs=73.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------------------------c--------------c-
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------------------Q--------------R- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------------------------~--------------~- 171 (414)
..+|+|||||++|+-+|..|++.|.+|+++++.+.+. . .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 4579999999999999999999999999999763210 0 0
Q ss_pred ---c--c--------------CHHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEE--EeCCCc-EEecCEEEEc
Q 014997 172 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAV--KLEDGS-TIDADTIVIG 228 (414)
Q Consensus 172 ---~--~--------------~~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v--~~~~g~-~i~~D~vi~a 228 (414)
. + ...+.+.+.+.+++ .|++++.++++.++..+ ++.+..+ ..++|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 01122333444444 48999999999999765 3444333 345664 7999999999
Q ss_pred cCCcCCChhhhhcCCc
Q 014997 229 IGAKPTVSPFERVGLN 244 (414)
Q Consensus 229 ~G~~p~~~~l~~~gl~ 244 (414)
.|.... .-+.+++.
T Consensus 165 dG~~S~--vr~~~gi~ 178 (407)
T PRK06185 165 DGRHSR--VRALAGLE 178 (407)
T ss_pred CCCchH--HHHHcCCC
Confidence 998653 33444443
No 192
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.84 E-value=4.7e-05 Score=80.16 Aligned_cols=92 Identities=21% Similarity=0.264 Sum_probs=67.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------cc-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +. .++.++.+...+.+++.|+++++++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 45799999999999999999999999999999887641 11 1345555666677888999999887541 1
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+.+.+. ...+|.||+|+|..+.
T Consensus 269 -------dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -------DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 1112221 2359999999998753
No 193
>PRK10015 oxidoreductase; Provisional
Probab=97.84 E-value=0.00023 Score=71.31 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=71.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc------------------cccc-----------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL----------------------- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~------------------l~~~----------------------- 172 (414)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+ .+..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 47999999999999999999999999999976321 0000
Q ss_pred --c------------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 173 --F------------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 173 --~------------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
+ -..+.+++.+.+++.|++++.++.|+.+... ++.+..+.. ++.++.||.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCcc
Confidence 0 0012234556667889999999999998754 345544444 44579999999999975
Q ss_pred C
Q 014997 233 P 233 (414)
Q Consensus 233 p 233 (414)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 4
No 194
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.00043 Score=68.95 Aligned_cols=136 Identities=16% Similarity=0.255 Sum_probs=87.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc----------------------------------------cc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------------------------QR 171 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l----------------------------------------~~ 171 (414)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+. ++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 36899999999999999999999999999999884331 11
Q ss_pred ccC-H-HHHHHHHHHHHhCCc--EEEcCceEEEEEecCCCcEEEEEeCCC----cEEecCEEEEccCCc--CCChhhhhc
Q 014997 172 LFT-P-SLAQRYEQLYQQNGV--KFVKGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFERV 241 (414)
Q Consensus 172 ~~~-~-~~~~~~~~~l~~~gv--~i~~~~~v~~i~~~~~~~~~~v~~~~g----~~i~~D~vi~a~G~~--p~~~~l~~~ 241 (414)
.++ . ++.++++...+..++ .+.+++.+.++....+|.- .|.+.++ ++.-||.|++|+|.. |+.+.....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW-~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKW-RVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCce-eEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 111 1 456677777777675 5777887888876543332 3444332 467799999999987 554433332
Q ss_pred CCcccCCCEEEcCCCCC----CCCcEEEEcc
Q 014997 242 GLNSSVGGIQVDGQFRT----RMPGIFAIGD 268 (414)
Q Consensus 242 gl~~~~g~i~vd~~~~t----~~~~IyA~GD 268 (414)
+++.=.|.+.-...++. ....|..+|-
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~ 194 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGC 194 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECC
Confidence 22221233332222222 3466788883
No 195
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.83 E-value=0.00022 Score=73.07 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=71.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------cc-------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------~~------------------------- 171 (414)
.|+|||+|..|+++|..+++.|.+|.++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 58999999999999999999999999998752110 00
Q ss_pred ----------ccCH-HHHHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 172 ----------LFTP-SLAQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 172 ----------~~~~-~~~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
++++ .+...+.+.+++. |+.++.+ .+..+...+++.+..|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0010 1223455556666 7888865 5666654335677889999999999999999999874
No 196
>PRK06370 mercuric reductase; Validated
Probab=97.83 E-value=0.00011 Score=74.47 Aligned_cols=95 Identities=25% Similarity=0.382 Sum_probs=64.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----c-------------------------------cC-H
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----L-------------------------------FT-P 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~-------------------------------~~-~ 175 (414)
...|+|||+|+.|+.+|..++++|.+|+++++.. +... + ++ +
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL-LGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFK 83 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc-cCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHH
Confidence 3579999999999999999999999999999752 1000 0 00 0
Q ss_pred HH-----------HHHHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 176 SL-----------AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 176 ~~-----------~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
.+ ...+...+++. ||+++.++.+ +. + .. .+.. +++++.+|.+|+|||.+|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~--~~-~-~~---~v~v-~~~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 84 AVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR--FE-S-PN---TVRV-GGETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE--Ec-c-CC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence 01 12234455666 9999887643 21 1 22 3344 456799999999999998743
No 197
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.83 E-value=0.00011 Score=72.00 Aligned_cols=94 Identities=24% Similarity=0.369 Sum_probs=64.1
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCccccc----ccCHHHH----H-------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR----LFTPSLA----Q------------------------- 179 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~----~~~~~~~----~------------------------- 179 (414)
.|+|||+|..|+.+|..|++. |.+|.++++.+.+.+. ....+.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 479999999999999999987 9999999987633210 1111111 0
Q ss_pred ---------HHHHH-HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 180 ---------RYEQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 180 ---------~~~~~-l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+.+. +++.+..++.+.+|.+++. + .+.+.+|+++.+|.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 11111 2222344677888888843 2 355688999999999999998764
No 198
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.82 E-value=1.5e-05 Score=79.87 Aligned_cols=107 Identities=25% Similarity=0.341 Sum_probs=27.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----------------------------c--------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R-------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----------------------------~-------------- 171 (414)
.|+|||||+.|+-+|..+++.|.+|.|+++.+.+-. +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 489999999999999999999999999998854300 0
Q ss_pred -----ccCH-HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC---CcEEecCEEEEccCCcCCChhhhhcC
Q 014997 172 -----LFTP-SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 172 -----~~~~-~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
.+++ .....+.+++++.|+++++++.+.++..+ ++++..|.+.+ ..++.++.+|-|+|. -+++..+|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~aG 156 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRD-GGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALAG 156 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccc---cccccccc
Confidence 0111 12233556677889999999999999864 56777887765 467999999999993 24555555
Q ss_pred Ccc
Q 014997 243 LNS 245 (414)
Q Consensus 243 l~~ 245 (414)
.+.
T Consensus 157 ~~~ 159 (428)
T PF12831_consen 157 APY 159 (428)
T ss_dssp ---
T ss_pred ccc
Confidence 554
No 199
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.82 E-value=5.1e-05 Score=80.12 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=66.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-------c-cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-------~-~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.|++++.++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999876532 1 113455555556678889999999886521
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+ +.+.+. ...+|.|++++|..+
T Consensus 403 --~-----i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence 0 111111 236999999999854
No 200
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.82 E-value=0.00013 Score=72.84 Aligned_cols=98 Identities=16% Similarity=0.251 Sum_probs=68.0
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccc----cCHH---------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL----FTPS--------------------------------- 176 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~----~~~~--------------------------------- 176 (414)
+|+|||||..|+-+|..|++.| .+|+|+++.+.+-... +.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 5999999874431000 0000
Q ss_pred --------------------H-HHHHHHHHHh--CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 177 --------------------L-AQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 177 --------------------~-~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+ ...+.+.|.+ .+..++.+++|++++.++++ ..+.+.+|+++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0 0112222222 14567889999999865444 367888999999999999999765
Q ss_pred C
Q 014997 234 T 234 (414)
Q Consensus 234 ~ 234 (414)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 3
No 201
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00015 Score=73.41 Aligned_cols=95 Identities=26% Similarity=0.375 Sum_probs=64.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----cc------------------------------C-HHH
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LF------------------------------T-PSL 177 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-----~~------------------------------~-~~~ 177 (414)
-+++|||+|+.|+.+|..++++|.+|.++++.. +-.. +. + .++
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 469999999999999999999999999999764 2100 00 0 111
Q ss_pred HHH-----------HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEEEccCCcCC
Q 014997 178 AQR-----------YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 178 ~~~-----------~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi~a~G~~p~ 234 (414)
.++ +...+++.||+++.+. ++.++ ... ..+...+ ++++.+|.+|+|+|.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~ 147 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPR 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCC
Confidence 111 3345677899999874 33332 122 2344323 467999999999999985
No 202
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.81 E-value=0.0011 Score=66.61 Aligned_cols=138 Identities=20% Similarity=0.300 Sum_probs=89.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeCCccc-------------------------c----cccC--HHHHH
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ 179 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~~~~l-------------------------~----~~~~--~~~~~ 179 (414)
...+|+|||+|++|+-+|..|++.|.. +.++++++.+- + ..++ ..+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 346899999999999999999999998 99999884321 0 0111 12567
Q ss_pred HHHHHHHhCCcE--EEcCceEEEEEecCCCcEEEEEeCCCcE--EecCEEEEccCCc--CCChhhhhcCCcccCCCEEEc
Q 014997 180 RYEQLYQQNGVK--FVKGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAK--PTVSPFERVGLNSSVGGIQVD 253 (414)
Q Consensus 180 ~~~~~l~~~gv~--i~~~~~v~~i~~~~~~~~~~v~~~~g~~--i~~D~vi~a~G~~--p~~~~l~~~gl~~~~g~i~vd 253 (414)
++...+++.++. +..++.|..+..++++..-.|.+++|.. +.||.||+|+|.- |+..-+ .|++.-.|.+.=.
T Consensus 87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~--~G~~~f~g~~~HS 164 (443)
T COG2072 87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDF--AGLDEFKGRILHS 164 (443)
T ss_pred HHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCC--CCccCCCceEEch
Confidence 777888877654 3455566666656666666788888765 5599999999973 333222 2333222332222
Q ss_pred CC----CCCCCCcEEEEccccc
Q 014997 254 GQ----FRTRMPGIFAIGDVAA 271 (414)
Q Consensus 254 ~~----~~t~~~~IyA~GD~a~ 271 (414)
.+ ..-.-++|-.||--++
T Consensus 165 ~~~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 165 ADWPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred hcCCCccccCCCeEEEECCCcc
Confidence 11 1224477888885544
No 203
>PRK09897 hypothetical protein; Provisional
Probab=97.79 E-value=0.00036 Score=71.31 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=66.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcccc-----------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ----------------------------------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l~----------------------------------------- 170 (414)
++|+|||+|+.|+-+|..|.+.+ .+|+|+++...+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 57999999999999999998764 47999998532210
Q ss_pred -----------------cc-cCHHHHHH---HHHHHHhCC--cEEEcCceEEEEEecCCCcEEEEEeCC-CcEEecCEEE
Q 014997 171 -----------------RL-FTPSLAQR---YEQLYQQNG--VKFVKGASIKNLEAGSDGRVAAVKLED-GSTIDADTIV 226 (414)
Q Consensus 171 -----------------~~-~~~~~~~~---~~~~l~~~g--v~i~~~~~v~~i~~~~~~~~~~v~~~~-g~~i~~D~vi 226 (414)
+. ++.-+... +.+.+.+.| +.++.+++|+.++..+++ ..+.+.+ |..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 00 00001111 222334555 788888899999865443 2466655 4679999999
Q ss_pred EccCCcCC
Q 014997 227 IGIGAKPT 234 (414)
Q Consensus 227 ~a~G~~p~ 234 (414)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99998543
No 204
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=0.00021 Score=72.35 Aligned_cols=96 Identities=35% Similarity=0.507 Sum_probs=62.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----cCHH-----------------------------HH-
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----FTPS-----------------------------LA- 178 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----~~~~-----------------------------~~- 178 (414)
-.|+|||+|+.|+.+|..++++|.+|+++++...+-..+ .+.. +.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 369999999999999999999999999999743221111 0100 00
Q ss_pred -------------HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997 179 -------------QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 179 -------------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~ 234 (414)
..+...+++.||+++.+. .++.. +..+ .+...+|+ ++.+|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~~--~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLDG--VGKV-VVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEcc--CCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 111223445567777654 24431 2222 34555664 6999999999999985
No 205
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.77 E-value=0.00034 Score=68.80 Aligned_cols=58 Identities=22% Similarity=0.400 Sum_probs=40.3
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
+.+.+++.|++++.+++|+++..+ ++.+ .|.++++ ++.+|.||+|+|.... .++...+
T Consensus 151 l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g 208 (380)
T TIGR01377 151 LQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLG 208 (380)
T ss_pred HHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhcc
Confidence 334456679999999999999764 3333 4666665 7999999999997543 3444444
No 206
>PLN02661 Putative thiazole synthesis
Probab=97.77 E-value=0.00067 Score=65.09 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=69.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCcccc----------cc----------------cC-----------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------RL----------------FT----------- 174 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~----------~~----------------~~----------- 174 (414)
.-.|+|||+|..|+-+|..|++. |.+|+++++...+-. .. ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35899999999999999999975 899999998743211 00 00
Q ss_pred HHHHHHHH-HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC------C--C------cEEecCEEEEccCCcCC
Q 014997 175 PSLAQRYE-QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKPT 234 (414)
Q Consensus 175 ~~~~~~~~-~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~------~--g------~~i~~D~vi~a~G~~p~ 234 (414)
......+. +.+++.||+++.++.+.++..+ ++++..+.+. + + ..+.++.||+|||..+.
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGP 245 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCc
Confidence 01111222 3344578999999999988754 5666666531 1 1 26899999999997653
No 207
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00022 Score=66.36 Aligned_cols=103 Identities=18% Similarity=0.291 Sum_probs=73.2
Q ss_pred cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCChhhhh----------
Q 014997 173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFER---------- 240 (414)
Q Consensus 173 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~l~~---------- 240 (414)
++-.+.+.+...+++.|..+.++.+|...+- .+++++.|.+.+.. .+.+|..|+|+|.--...+..+
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 3445677888889999999999999998874 46788888888875 4669999999997543222111
Q ss_pred cCCcc------------------cCCCEEEcCCCCC-----CCCcEEEEccccccCCcc
Q 014997 241 VGLNS------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKM 276 (414)
Q Consensus 241 ~gl~~------------------~~g~i~vd~~~~t-----~~~~IyA~GD~a~~~~~~ 276 (414)
+.+.. ..=|+.+|+++|. .+.|+||+|.+....++.
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 11100 0126888988885 357899999998877653
No 208
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.75 E-value=0.00034 Score=77.15 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc----------CHHHHHHHHHHHHhC-CcEEEcCceEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN-GVKFVKGASIKNL 201 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~----------~~~~~~~~~~~l~~~-gv~i~~~~~v~~i 201 (414)
..+|+|||+|+.|+..|..+++.|.+|+++++.+.+..... ..++...+.+.+++. ++++++++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 35799999999999999999999999999998765432111 122323344555555 5999999999887
Q ss_pred EecCCCcEEEEE-e--------CC---C--cEEecCEEEEccCCcCCC
Q 014997 202 EAGSDGRVAAVK-L--------ED---G--STIDADTIVIGIGAKPTV 235 (414)
Q Consensus 202 ~~~~~~~~~~v~-~--------~~---g--~~i~~D~vi~a~G~~p~~ 235 (414)
.. ++.+..+. . .. + .++.+|.||+|+|..+..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 53 22221111 0 00 1 268999999999998753
No 209
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.75 E-value=0.00013 Score=71.21 Aligned_cols=98 Identities=22% Similarity=0.389 Sum_probs=75.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc------cc---ccCHHHHHHHHHHHHhCCcEEEcCceEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL------QR---LFTPSLAQRYEQLYQQNGVKFVKGASIKNL 201 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l------~~---~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i 201 (414)
.++++|+|+|+.|.-++..++..| -+++++.+...+. +. ...........+.+++.||++++++.|+.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 578999999999999999998887 3577776553221 11 122344455567789999999999999999
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+-.. ..+.+++|+.+++|.+++|||..|.
T Consensus 154 D~~~----K~l~~~~Ge~~kys~LilATGs~~~ 182 (478)
T KOG1336|consen 154 DLAS----KTLVLGNGETLKYSKLIIATGSSAK 182 (478)
T ss_pred eccc----cEEEeCCCceeecceEEEeecCccc
Confidence 7432 2788999999999999999999664
No 210
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.74 E-value=0.00022 Score=70.72 Aligned_cols=94 Identities=17% Similarity=0.364 Sum_probs=68.1
Q ss_pred EEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------c----------------------
Q 014997 137 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------L---------------------- 172 (414)
Q Consensus 137 vVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------~---------------------- 172 (414)
+|||+|..|+-+|..+++.|.+|+++++.+.+... .
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58999999999999999999999999976432110 0
Q ss_pred -----------------c-----CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997 173 -----------------F-----TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230 (414)
Q Consensus 173 -----------------~-----~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 230 (414)
+ ...+.+.+.+.+++.|+++++++.|.++...+ + ...+.+ +++++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD-N-GFGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC-C-eEEEEE-CCcEEEcCEEEECCC
Confidence 0 01223344556677899999999999997543 3 234555 456799999999999
Q ss_pred CcC
Q 014997 231 AKP 233 (414)
Q Consensus 231 ~~p 233 (414)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 753
No 211
>PRK06126 hypothetical protein; Provisional
Probab=97.72 E-value=0.00042 Score=71.68 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=69.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc------------------------------c------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------------------Q------------ 170 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l------------------------------~------------ 170 (414)
..+|+|||||+.|+-+|..|+++|.+|+|+++.+.+. +
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4679999999999999999999999999999772210 0
Q ss_pred -------cc-c--------------------------C-HHHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 171 -------RL-F--------------------------T-PSLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 171 -------~~-~--------------------------~-~~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+. + + ..+...+.+.+++ .|+++++++++++++.++++....+..
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 00 0 0 0122233344444 489999999999998664443222221
Q ss_pred -CCCc--EEecCEEEEccCCcCC
Q 014997 215 -EDGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 215 -~~g~--~i~~D~vi~a~G~~p~ 234 (414)
.+|+ ++.+|.||.|.|....
T Consensus 167 ~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 167 LDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCCcEEEEEEEEEEecCCcchH
Confidence 3453 6899999999998653
No 212
>PRK06996 hypothetical protein; Provisional
Probab=97.70 E-value=0.00037 Score=69.08 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=72.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC----CcEEEEeeCCcc------------------cc-------------------
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQ------------------- 170 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g----~~Vtlv~~~~~~------------------l~------------------- 170 (414)
...+|+|||||+.|+-+|..|++.| .+|+++++.+.. +.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4468999999999999999999986 469999975210 00
Q ss_pred --c------------------cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC---cEEecCEEE
Q 014997 171 --R------------------LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG---STIDADTIV 226 (414)
Q Consensus 171 --~------------------~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g---~~i~~D~vi 226 (414)
. .. -..+.+.+.+.+++.|++++.++++++++.+.++. .+.+.++ +++.||+||
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v--~v~~~~~~g~~~i~a~lvI 167 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGV--TLALGTPQGARTLRARIAV 167 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE--EEEECCCCcceEEeeeEEE
Confidence 0 00 02345566777788899999999999997654443 4566654 589999999
Q ss_pred EccCCc
Q 014997 227 IGIGAK 232 (414)
Q Consensus 227 ~a~G~~ 232 (414)
-|-|..
T Consensus 168 gADG~~ 173 (398)
T PRK06996 168 QAEGGL 173 (398)
T ss_pred ECCCCC
Confidence 999964
No 213
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.70 E-value=0.00051 Score=69.00 Aligned_cols=100 Identities=21% Similarity=0.332 Sum_probs=71.6
Q ss_pred eEEEECCChHHHHHHHHHHh----CCCcEEEEeeCC--ccc--------------------------------cc-----
Q 014997 135 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL--------------------------------QR----- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~----~g~~Vtlv~~~~--~~l--------------------------------~~----- 171 (414)
.|+|||||+.|+-+|..|++ .|.+|+++++.+ ... ..
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 100 00
Q ss_pred ------------------ccC--------------HHHHHHHHHHHHhC---CcEEEcCceEEEEEec-----CCCcEEE
Q 014997 172 ------------------LFT--------------PSLAQRYEQLYQQN---GVKFVKGASIKNLEAG-----SDGRVAA 211 (414)
Q Consensus 172 ------------------~~~--------------~~~~~~~~~~l~~~---gv~i~~~~~v~~i~~~-----~~~~~~~ 211 (414)
.++ ..+.+.+.+.+++. +++++.++++.+++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 11223344555555 4999999999999632 1223346
Q ss_pred EEeCCCcEEecCEEEEccCCcCC
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.+.+|+++.+|+||-|-|....
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCCh
Confidence 78899999999999999998764
No 214
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.69 E-value=0.00033 Score=70.90 Aligned_cols=94 Identities=21% Similarity=0.411 Sum_probs=63.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccccc----------------------------------C------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------------------------------T------ 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~----------------------------------~------ 174 (414)
.++|||+|+.|+.+|..++++|.+|.++++.+ +...++ +
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 58999999999999999999999999999752 111100 0
Q ss_pred --HHHHH-----HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-EEecCEEEEccCCcCCCh
Q 014997 175 --PSLAQ-----RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 175 --~~~~~-----~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 236 (414)
.++.. .+.+.+++.||+++.+.. ..+ +.. .|.+.+|+ .+.+|.+|+|+|.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~~----~~~--~v~v~~g~~~~~~~~lIiATGs~p~~p 143 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRA-RFK----DPK--TVKVDLGREVRGAKRFLIATGARPAIP 143 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EEc----cCC--EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence 01111 123456778999987653 222 122 45556653 689999999999998643
No 215
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.68 E-value=0.00055 Score=67.16 Aligned_cols=47 Identities=26% Similarity=0.428 Sum_probs=35.9
Q ss_pred HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 185 YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 185 l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.+.|++++.+++|+++...++ . ..+.+++| .+.+|.||+|+|....
T Consensus 159 ~~~~gv~i~~~~~v~~i~~~~~-~-~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 159 AREAGAELLFNEPVTAIEADGD-G-VTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred HHHCCCEEECCCEEEEEEeeCC-e-EEEEeCCC-EEEeeEEEEecCcchh
Confidence 4567899999999999976433 3 35677777 6999999999997643
No 216
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.68 E-value=0.00066 Score=67.19 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=71.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--c-----------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----------------------------------------- 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~----------------------------------------- 170 (414)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999875310 0
Q ss_pred --c-cc-------------CHHHHHHHHHHHHhCCcEEEcCceEEEEEe-cCCCcEEEEEe-CCCc--EEecCEEEEccC
Q 014997 171 --R-LF-------------TPSLAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKL-EDGS--TIDADTIVIGIG 230 (414)
Q Consensus 171 --~-~~-------------~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~v~~-~~g~--~i~~D~vi~a~G 230 (414)
. .+ ...+.+.+.+...+.|+++++++++++++. ++++ ..|.+ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 0 00 011223344444667999999999999875 3222 24555 4664 689999999999
Q ss_pred CcCCC
Q 014997 231 AKPTV 235 (414)
Q Consensus 231 ~~p~~ 235 (414)
.....
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 87643
No 217
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.68 E-value=0.0018 Score=63.88 Aligned_cols=55 Identities=31% Similarity=0.451 Sum_probs=39.3
Q ss_pred CCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 014997 248 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 303 (414)
Q Consensus 248 g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~~ 303 (414)
|||.||.+.||+.|++||+|.|+....---++.+ ..+.-.+...|..+|++|.+.
T Consensus 342 GGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 342 GGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred ccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 6899999999999999999999875322111211 223345777788888888863
No 218
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.65 E-value=7.2e-05 Score=73.87 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
+|+|||||..|+|+|..|+++|.+|+++++.+.+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999987654
No 219
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.65 E-value=0.00082 Score=67.58 Aligned_cols=61 Identities=15% Similarity=0.256 Sum_probs=43.5
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc--EEecCEEEEccCC-cCCChhhh
Q 014997 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIVIGIGA-KPTVSPFE 239 (414)
Q Consensus 179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~--~i~~D~vi~a~G~-~p~~~~l~ 239 (414)
..+.+.+++.|+++++++.++++..++++++..+.. .+++ .+.++.||+|+|. ..|.++++
T Consensus 134 ~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 134 QKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred HHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 445555677899999999999998765666665554 3443 4789999999994 45544443
No 220
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.64 E-value=0.00046 Score=67.81 Aligned_cols=97 Identities=23% Similarity=0.285 Sum_probs=69.8
Q ss_pred eEEEECCChHHHHHHHHH--HhCCCcEEEEeeCCcc--ccc---------------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQR--------------------------------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l--~~~g~~Vtlv~~~~~~--l~~--------------------------------------- 171 (414)
.|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 379999999999999999 7789999999876433 000
Q ss_pred --cc-CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 172 --LF-TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 172 --~~-~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.+ ...+.+.+.+.+.+.| .+..+..|.+|+..++ ...+.+++|+++.|+.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 00 1123344555556445 4566788999986544 34678899999999999999996644
No 221
>PLN02546 glutathione reductase
Probab=97.63 E-value=0.00037 Score=71.85 Aligned_cols=94 Identities=19% Similarity=0.388 Sum_probs=64.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC---------Ccc---------------c------c---c----------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHL---------------L------Q---R---------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~---------~~~---------------l------~---~---------- 171 (414)
.++|||+|+.|+.+|..++++|++|.++++. ..+ + . .
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~ 160 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET 160 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence 6999999999999999999999999999951 110 0 0 0
Q ss_pred --ccC------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 172 --LFT------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 172 --~~~------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
.++ ..+...+.+.+++.||+++.+. .+.+.. . .+.. +|+++.+|.+|+|+|.+|...
T Consensus 161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd~---~---~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVDP---H---TVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEccC---C---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 000 0122334556777899998763 333432 1 3444 577899999999999998644
No 222
>PRK07538 hypothetical protein; Provisional
Probab=97.62 E-value=0.00065 Score=67.70 Aligned_cols=98 Identities=20% Similarity=0.263 Sum_probs=67.1
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc----------------------------------cc-------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------LF------- 173 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------~~------- 173 (414)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+. .+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 6899999999999999999999999999987432100 00
Q ss_pred -------------------CHHHHHHHHHHHHh-CC-cEEEcCceEEEEEecCCCcEEEEEeCC-----CcEEecCEEEE
Q 014997 174 -------------------TPSLAQRYEQLYQQ-NG-VKFVKGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVI 227 (414)
Q Consensus 174 -------------------~~~~~~~~~~~l~~-~g-v~i~~~~~v~~i~~~~~~~~~~v~~~~-----g~~i~~D~vi~ 227 (414)
-..+.+.+.+.+.+ .| +.++.++++++++.++++.+ +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 00111223333333 35 57999999999986655533 33333 24899999999
Q ss_pred ccCCcCC
Q 014997 228 GIGAKPT 234 (414)
Q Consensus 228 a~G~~p~ 234 (414)
|-|....
T Consensus 160 ADG~~S~ 166 (413)
T PRK07538 160 ADGIHSA 166 (413)
T ss_pred CCCCCHH
Confidence 9998653
No 223
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.62 E-value=0.00082 Score=68.80 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-----------------------------------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 171 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~----------------------------------------- 171 (414)
.-.|+|||+|..|+-+|..+++.|.+|.|+++.+.+-..
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d 140 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTND 140 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 347999999999999999999999999999976421000
Q ss_pred --------------------------------------c--------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC
Q 014997 172 --------------------------------------L--------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS 205 (414)
Q Consensus 172 --------------------------------------~--------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~ 205 (414)
. .+..+...+.+.+++.|+++++++.++++..+
T Consensus 141 ~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~- 219 (506)
T PRK06481 141 KALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK- 219 (506)
T ss_pred HHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec-
Confidence 0 00112334555567789999999999999754
Q ss_pred CCcEEEEEe--CCC--cEEecCEEEEccC-CcCCChhhhh
Q 014997 206 DGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER 240 (414)
Q Consensus 206 ~~~~~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~~l~~ 240 (414)
++++..+.. .++ ..+.++.||+|+| +.+|.+++++
T Consensus 220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 566655554 343 3689999999998 6666555443
No 224
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.61 E-value=0.001 Score=66.13 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=39.7
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+.+.+++.|++++.++.|+++...+++.+..+.+.+| .+.++.||+++|...
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~ 240 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHS 240 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhh
Confidence 4456678899999999999997544455556777777 599999888877543
No 225
>PRK13984 putative oxidoreductase; Provisional
Probab=97.61 E-value=0.00018 Score=75.44 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+.. ..+++++.....+.+++.|++++.++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 578899999999999999999999999999998765411 0123444455556788899999999876310
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+.+++ ....+|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999764
No 226
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.61 E-value=0.00018 Score=74.72 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=65.7
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc--------cccCHHHHHHHHHHHHhCCcEEEcCceE-EEE
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKGASI-KNL 201 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~--------~~~~~~~~~~~~~~l~~~gv~i~~~~~v-~~i 201 (414)
..+++|+|||+|++|+.+|..|+++|.+|+++++.+.+.. ..++.+....-.+.+++.|++++.++.+ ..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~ 214 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDI 214 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcC
Confidence 4678999999999999999999999999999998765421 1123444444445677899999988765 222
Q ss_pred EecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 202 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
... . + ...+|.||+++|..+.
T Consensus 215 ~~~------~--~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 215 TLE------Q--L----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CHH------H--H----HhhCCEEEEeeCCCCC
Confidence 110 0 1 1248999999998753
No 227
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.57 E-value=0.0006 Score=69.00 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=29.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
.|+|||+|+.|+.+|..|+++|.+|.++++
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 689999999999999999999999999998
No 228
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.57 E-value=0.0013 Score=65.48 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
++|+|||+|.+|+-+|..|++.|.+|+++++++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999864
No 229
>PRK13748 putative mercuric reductase; Provisional
Probab=97.54 E-value=0.0012 Score=68.58 Aligned_cols=97 Identities=27% Similarity=0.398 Sum_probs=63.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc---------------------------c---cc------cC-HH
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------------Q---RL------FT-PS 176 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l---------------------------~---~~------~~-~~ 176 (414)
..++|||+|+.|+.+|..+++.|.+|.++++. .+- + .. .+ ..
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 177 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTIDRSR 177 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCccCHHH
Confidence 58999999999999999999999999999976 210 0 00 00 01
Q ss_pred HHHH------------HHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997 177 LAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 177 ~~~~------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 236 (414)
+.++ ....+++. +|+++.+. +..+. .. ...|.+.+|+ ++.+|.+|+|+|.+|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~---~~-~~~v~~~~g~~~~~~~d~lviAtGs~p~~p 247 (561)
T PRK13748 178 LLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFKD---DQ-TLIVRLNDGGERVVAFDRCLIATGASPAVP 247 (561)
T ss_pred HHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEec---CC-EEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 1111 11223443 78888763 33332 22 2345556663 699999999999998744
No 230
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.54 E-value=0.0014 Score=65.09 Aligned_cols=99 Identities=19% Similarity=0.301 Sum_probs=64.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc---------------------------------c--------c-
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------R--------L- 172 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~---------------------------------~--------~- 172 (414)
+|+|||+|+.|+-+|..|++.|.+|.++++.+.+.. . .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 689999999999999999999999999997632100 0 0
Q ss_pred --------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEec-CCCcEEEEEe--CC-----C--cEEecCEEEEccCCcC
Q 014997 173 --------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAKP 233 (414)
Q Consensus 173 --------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~--~~-----g--~~i~~D~vi~a~G~~p 233 (414)
++ ..+.+.+.+...+.|++++.++ +..+... ..+....+.+ .+ | .++.++.||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 1122234455677899998775 6666421 1122223332 21 3 4799999999999876
Q ss_pred C
Q 014997 234 T 234 (414)
Q Consensus 234 ~ 234 (414)
.
T Consensus 161 ~ 161 (398)
T TIGR02028 161 R 161 (398)
T ss_pred H
Confidence 3
No 231
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.54 E-value=0.00019 Score=76.95 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=32.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.+++|+|||+|+.|+.+|..|+++|++||++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
No 232
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.52 E-value=0.0012 Score=65.18 Aligned_cols=96 Identities=21% Similarity=0.380 Sum_probs=66.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC-Ccc--------------c------------------cc----------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL--------------L------------------QR---------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~-~~~--------------l------------------~~---------- 171 (414)
+|+|||+|+.|+-+|..|++.|.+|.++++. ++. + +.
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999986 211 0 00
Q ss_pred ---c---cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC------C--cEEecCEEEEccCCcC
Q 014997 172 ---L---FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP 233 (414)
Q Consensus 172 ---~---~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~------g--~~i~~D~vi~a~G~~p 233 (414)
. ++ ..+.+.+.+...+.|++++.+ .++++..++++. .+.+.+ | .++.+|.||.|.|...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~--~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGV--TLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeE--EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0 01 112234555567789999865 588887554432 344432 2 4799999999999765
No 233
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.51 E-value=0.0012 Score=65.21 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=68.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--c----cc-----------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--Q----RL----------------------------------- 172 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--~----~~----------------------------------- 172 (414)
.+|+|||+|+.|+-+|..|++.|.+|+|+++.+... . ..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999875310 0 00
Q ss_pred -----------------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecCEEEEccCC
Q 014997 173 -----------------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGA 231 (414)
Q Consensus 173 -----------------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~ 231 (414)
++ ..+...+.+.+.+.|+.++.+.++..+...++.. ..|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 00 1122334444556688888888777765322222 245664 675 6899999999998
Q ss_pred cCC
Q 014997 232 KPT 234 (414)
Q Consensus 232 ~p~ 234 (414)
...
T Consensus 162 ~S~ 164 (390)
T TIGR02360 162 HGV 164 (390)
T ss_pred chh
Confidence 654
No 234
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.51 E-value=0.0011 Score=70.26 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.+|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 47999999999999999999999999999976
No 235
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.51 E-value=0.0014 Score=58.07 Aligned_cols=103 Identities=22% Similarity=0.259 Sum_probs=67.3
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------c------------------------------C-H
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------F------------------------------T-P 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~------------------------------~-~ 175 (414)
...|+|||+|++|+-+|..|++.|.+|.++++...+-... | + .
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 4679999999999999999999999999999874331100 0 0 1
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-----------CCcEEecCEEEEccCCcCCC
Q 014997 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-----------~g~~i~~D~vi~a~G~~p~~ 235 (414)
+....+....-+.|++++....|..+--.+++++..+... |--.+.+..||-+||...+.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 1222333333558999999999988865444677766652 22379999999999998754
No 236
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=0.0012 Score=67.01 Aligned_cols=31 Identities=32% Similarity=0.284 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
..++|||+|+.|+.+|..+++.|.+|.++++
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4699999999999999999999999999997
No 237
>PRK14694 putative mercuric reductase; Provisional
Probab=97.51 E-value=0.0011 Score=67.14 Aligned_cols=98 Identities=23% Similarity=0.389 Sum_probs=64.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------cc--ccc-----CH---
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------LQ--RLF-----TP--- 175 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~---------------------------l~--~~~-----~~--- 175 (414)
.-.|+|||+|+.|+.+|..|++.|.+|.++++.. + .+ ..+ ..
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~-~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~ 84 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGT-IGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRS 84 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc-cccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHH
Confidence 3479999999999999999999999999999753 1 00 000 00
Q ss_pred HHHHH------------HHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCC--cEEecCEEEEccCCcCCCh
Q 014997 176 SLAQR------------YEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 176 ~~~~~------------~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 236 (414)
.+.+. ....+++. +|+++.+ .+..++. +. ..|.+.+| +++.+|.+|+|||.+|...
T Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p 155 (468)
T PRK14694 85 ALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEP 155 (468)
T ss_pred HHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCC
Confidence 11111 11123333 7888876 3555542 22 35666776 3799999999999998644
No 238
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.50 E-value=0.0011 Score=67.02 Aligned_cols=48 Identities=27% Similarity=0.479 Sum_probs=35.6
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
+.+.+++.|++|+.++.|++++.+ + . ..|.+.+| ++.||.||+|+|.-
T Consensus 189 L~~~a~~~Gv~i~~~t~V~~i~~~-~-~-~~v~t~~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 189 LRRVALELGVEIHENTPMTGLEEG-Q-P-AVVRTPDG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHcCCEEECCCeEEEEeeC-C-c-eEEEeCCc-EEECCEEEEccccc
Confidence 334446789999999999998742 2 2 35677776 69999999999854
No 239
>PLN02507 glutathione reductase
Probab=97.49 E-value=0.0012 Score=67.35 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=64.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC---------Cccccc-----ccCH------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE---------NHLLQR-----LFTP------------------------ 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~---------~~~l~~-----~~~~------------------------ 175 (414)
-.++|||+|+.|+.+|..++++|.+|.++++. ..+-.. +.+.
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~ 105 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEIN 105 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 36999999999999999999999999999951 111000 0000
Q ss_pred -----H--------------HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCC
Q 014997 176 -----S--------------LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 176 -----~--------------~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~ 234 (414)
+ +...+.+.+++.||+++.+ .+..+.. ....|.+.+|+ ++.+|.+|+|+|.+|.
T Consensus 106 ~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~----~~v~V~~~~g~~~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 106 EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGP----NEVEVTQLDGTKLRYTAKHILIATGSRAQ 180 (499)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC----CEEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence 0 0111223455678888876 3334431 22356667775 5899999999999986
Q ss_pred Ch
Q 014997 235 VS 236 (414)
Q Consensus 235 ~~ 236 (414)
..
T Consensus 181 ~p 182 (499)
T PLN02507 181 RP 182 (499)
T ss_pred CC
Confidence 43
No 240
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.49 E-value=0.0013 Score=64.35 Aligned_cols=31 Identities=32% Similarity=0.496 Sum_probs=28.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999875
No 241
>PTZ00058 glutathione reductase; Provisional
Probab=97.49 E-value=0.0012 Score=68.01 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=29.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.++|||+|+.|+.+|..+++.|.+|.++++.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 6999999999999999999999999999975
No 242
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.00031 Score=69.76 Aligned_cols=98 Identities=23% Similarity=0.370 Sum_probs=68.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC------------------------------------------ccccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~------------------------------------------~~l~~ 171 (414)
-.|+|||||..|+|.|.+.+++|.++.+++... ++|..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 479999999999999999999999988877551 11111
Q ss_pred ccCH------------HHHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 172 LFTP------------SLAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 172 ~~~~------------~~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
.-+| .....+++.+++ .++.++.+. |..+.-.++.++..|.+.+|..+.|+.||+++|.-
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~-v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGE-VEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhh-hHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 1111 123444555544 467776654 45554332335889999999999999999999964
No 243
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00085 Score=59.21 Aligned_cols=98 Identities=15% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEee--------------------CCcccccccCHHHHHHHHHHHHhCCcEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP--------------------ENHLLQRLFTPSLAQRYEQLYQQNGVKF 192 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~--------------------~~~~l~~~~~~~~~~~~~~~l~~~gv~i 192 (414)
..+|+|||+|+.+...|.++++...+-.+++- -+.+-....++++.+.+++.-++.|.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 46899999999999999999887655555542 2333334467889999999999999999
Q ss_pred EcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 193 VKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 193 ~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
++.+ |.++... .....+.+ +.+.+.||.||+++|....
T Consensus 88 ~tEt-Vskv~~s--skpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 88 ITET-VSKVDLS--SKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred eeee-hhhcccc--CCCeEEEe-cCCceeeeeEEEeccccee
Confidence 9854 6666532 23334444 5567999999999998764
No 244
>PRK11445 putative oxidoreductase; Provisional
Probab=97.46 E-value=0.0019 Score=62.89 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=66.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc--------ccccCH-------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP------------------------------- 175 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l--------~~~~~~------------------------------- 175 (414)
+|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999998 9999999775210 000000
Q ss_pred ------------------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc--EEecCEEEEccCCcCC
Q 014997 176 ------------------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 176 ------------------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~D~vi~a~G~~p~ 234 (414)
++.+.+.+ ..+.|++++.++.++.++..+++. .+.+ .+|+ ++.||.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~~~~v~~i~~~~~~~--~v~~~~~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYHNSLCRKIWREDDGY--HVIFRADGWEQHITARYLVGADGANSM 158 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEcCCEEEEEEEcCCEE--EEEEecCCcEEEEEeCEEEECCCCCcH
Confidence 01111122 234689999999999998654442 3443 5664 6899999999998653
No 245
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.46 E-value=0.0011 Score=56.50 Aligned_cols=41 Identities=29% Similarity=0.512 Sum_probs=31.4
Q ss_pred CcEEE-cCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997 189 GVKFV-KGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 189 gv~i~-~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (414)
|+++. ...+|..+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 114 ~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 114 GITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 54443 34578888876555 3678899999999999999996
No 246
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.46 E-value=0.0019 Score=65.41 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=73.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc-c------c-------c--------------c-----------cC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-L------Q-------R--------------L-----------FT 174 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~-l------~-------~--------------~-----------~~ 174 (414)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+.. . . . . .+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD 84 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999975420 0 0 0 0 00
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCc
Q 014997 175 ----------------------------------------------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGR 208 (414)
Q Consensus 175 ----------------------------------------------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~ 208 (414)
..+...+.+.+++.|++++.++.++++..+ +++
T Consensus 85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~ 163 (466)
T PRK08274 85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGR 163 (466)
T ss_pred HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCe
Confidence 012233444556789999999999999754 566
Q ss_pred EEEEEeC--CC--cEEecCEEEEccCCc-CCChhhh
Q 014997 209 VAAVKLE--DG--STIDADTIVIGIGAK-PTVSPFE 239 (414)
Q Consensus 209 ~~~v~~~--~g--~~i~~D~vi~a~G~~-p~~~~l~ 239 (414)
+..+... ++ ..+.++.||+|+|-. .|.++++
T Consensus 164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~ 199 (466)
T PRK08274 164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLR 199 (466)
T ss_pred EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHH
Confidence 6666652 33 368999999999843 4433443
No 247
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.45 E-value=0.0015 Score=67.46 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 46999999999999999999999999999976
No 248
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.45 E-value=0.00048 Score=62.57 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=67.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc-------------------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 171 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~------------------------------------------- 171 (414)
+|+|||+|..|+-+|..|+..|.+||+++++.-+..|
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 5899999999999999999999999999987211000
Q ss_pred ------------------ccC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEecCEEEEccCC
Q 014997 172 ------------------LFT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGA 231 (414)
Q Consensus 172 ------------------~~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~D~vi~a~G~ 231 (414)
... +.++. +.+. -....+++++++|+++...++. -.+..++| ....+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsa-lak~-LAtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSA-LAKF-LATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHH-HHHH-HhccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence 011 11222 2222 3345778888999999766333 36777665 46889999999876
Q ss_pred cCCChhh
Q 014997 232 KPTVSPF 238 (414)
Q Consensus 232 ~p~~~~l 238 (414)
--...+|
T Consensus 159 PQ~~~LL 165 (331)
T COG3380 159 PQTATLL 165 (331)
T ss_pred Ccchhhc
Confidence 4333333
No 249
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=0.0014 Score=66.28 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=30.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
+++|||+|+.|+.+|..+++.|.+|+++++.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 68999999999999999999999999999863
No 250
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00035 Score=74.20 Aligned_cols=91 Identities=24% Similarity=0.361 Sum_probs=69.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------c-ccCHHHHHHHHHHHHhCCcEEEcCceEEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKGASIKNLEA 203 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~-~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~ 203 (414)
.+++|.|||+|+.|+-+|..|.+.|+.|++.+|.+++-. . -+++.+.+.-.+.+.+.||+|++|+.|-.
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk--- 1860 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK--- 1860 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc---
Confidence 478999999999999999999999999999999988632 1 14556666666788999999999876521
Q ss_pred cCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 204 GSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 204 ~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
.+.+ |+-.-+.|.||+|+|..-
T Consensus 1861 -------~vs~-d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1861 -------HVSL-DELKKENDAIVLATGSTT 1882 (2142)
T ss_pred -------cccH-HHHhhccCeEEEEeCCCC
Confidence 1111 222345799999999763
No 251
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.44 E-value=0.0021 Score=65.30 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=46.2
Q ss_pred HHHHHHHHHHh----CC--cEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCC
Q 014997 177 LAQRYEQLYQQ----NG--VKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 243 (414)
Q Consensus 177 ~~~~~~~~l~~----~g--v~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl 243 (414)
+...+.+.+++ .| +++++++.|+.++..+ +....|.+++| ++.+|.||+|+|.-.. .+++..|+
T Consensus 213 L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi 282 (497)
T PTZ00383 213 LSESFVKHARRDALVPGKKISINLNTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGY 282 (497)
T ss_pred HHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCC
Confidence 34455556677 67 8899999999998642 33446777777 6999999999997653 45666665
No 252
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.40 E-value=0.0023 Score=63.77 Aligned_cols=56 Identities=30% Similarity=0.517 Sum_probs=39.2
Q ss_pred HHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcC
Q 014997 184 LYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 242 (414)
Q Consensus 184 ~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~g 242 (414)
.+++.|++++.++.|++++.. ++.+..+.+.++ ++.+|.||+|+|.... .++...+
T Consensus 210 ~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g 265 (416)
T PRK00711 210 MAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG 265 (416)
T ss_pred HHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence 346678999999999998754 344445666655 7999999999997653 3444433
No 253
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.40 E-value=0.00099 Score=68.50 Aligned_cols=127 Identities=22% Similarity=0.437 Sum_probs=88.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhC---CCcEEEEeeCCcc------cccccC-----HHHHHHHHHHHHhCCcEEEcCceE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKGASI 198 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~---g~~Vtlv~~~~~~------l~~~~~-----~~~~~~~~~~l~~~gv~i~~~~~v 198 (414)
..+++|||.|..|.-+...+.+. -.+||++...+++ +++.+. +++...-..+++++||+++++..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999998888774 3678888766543 222222 233334457889999999999999
Q ss_pred EEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcCCCCCCCCcEEEEccccc
Q 014997 199 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 271 (414)
Q Consensus 199 ~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~~~~t~~~~IyA~GD~a~ 271 (414)
..+.... + .|..+.|.++.+|-+|+|||..|.........++ ++.+ +| +..+++|.+|++.
T Consensus 83 ~~idr~~--k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R-~i~D~~am~~~ar 143 (793)
T COG1251 83 IQIDRAN--K--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YR-TIDDVEAMLDCAR 143 (793)
T ss_pred EEeccCc--c--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Ee-cHHHHHHHHHHHh
Confidence 9997542 2 6788899999999999999999975443332221 1211 12 2456667777744
No 254
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.37 E-value=0.0026 Score=66.70 Aligned_cols=33 Identities=36% Similarity=0.437 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.-.|+|||||.+|+-+|..|+++|.+|+++++.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999986
No 255
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.36 E-value=0.0017 Score=64.74 Aligned_cols=58 Identities=26% Similarity=0.426 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCcCC
Q 014997 176 SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 234 (414)
Q Consensus 176 ~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~p~ 234 (414)
.+...+.+.+++.|++|+.++.++++..+ ++++..+... +|+ .+.++.||+|+|-...
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 35566777889999999999999999874 6688777765 454 5889999999997664
No 256
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.35 E-value=0.0014 Score=66.34 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.++|||+|+.|+.+|..|++.|.+|.++++.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999999999983
No 257
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.35 E-value=0.0025 Score=65.79 Aligned_cols=99 Identities=23% Similarity=0.319 Sum_probs=70.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------------------------------------- 168 (414)
-.|+|||+|..|+-+|..+++.|.+|+++++....
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 47999999999999999999999999999875211
Q ss_pred ----------------cc------------------cc-------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997 169 ----------------LQ------------------RL-------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 207 (414)
Q Consensus 169 ----------------l~------------------~~-------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 207 (414)
+. +. .+..+...+.+.+++.||+++.++.+.++..++++
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 00 01223344555666778999999999998765456
Q ss_pred cEEEEEeC-------CC-cEEecCEEEEccCCc
Q 014997 208 RVAAVKLE-------DG-STIDADTIVIGIGAK 232 (414)
Q Consensus 208 ~~~~v~~~-------~g-~~i~~D~vi~a~G~~ 232 (414)
++..+... ++ ..+.++.||+|+|-.
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 66665542 33 368999999999963
No 258
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.34 E-value=0.0016 Score=65.99 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=30.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..++|||+|+.|+.+|..++++|.+|+++++.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999975
No 259
>PRK14727 putative mercuric reductase; Provisional
Probab=97.34 E-value=0.0019 Score=65.65 Aligned_cols=99 Identities=23% Similarity=0.395 Sum_probs=63.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc-----------------------------------cCHH-
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------------------------FTPS- 176 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-----------------------------------~~~~- 176 (414)
..+++|||+|+.|+.+|..|+++|.+|+++++.+.+...+ ++..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 95 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL 95 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence 4579999999999999999999999999999863211000 0100
Q ss_pred HH-------H-----HHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCCh
Q 014997 177 LA-------Q-----RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 177 ~~-------~-----~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 236 (414)
+. . ...+.++.. ||+++.+. ..+.. . ....|.+.+|+ ++.+|.+|+|||.+|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~--a~f~~--~-~~v~v~~~~g~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGY--ARFKD--G-NTLVVRLHDGGERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEE--EEEec--C-CEEEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence 00 0 012223333 78887664 23331 2 22356666764 699999999999998644
No 260
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.33 E-value=0.0034 Score=63.18 Aligned_cols=99 Identities=19% Similarity=0.270 Sum_probs=65.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc-----------------c----------------cc-------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----------------Q----------------RL------- 172 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l-----------------~----------------~~------- 172 (414)
.-+|+|||||+.|+-+|..|++.|.+|.++++.+... + ..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 3579999999999999999999999999999763210 0 00
Q ss_pred ----------cC-HHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CCcEEEEEeC---------CCcEEecCEEEEccC
Q 014997 173 ----------FT-PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DGRVAAVKLE---------DGSTIDADTIVIGIG 230 (414)
Q Consensus 173 ----------~~-~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~~~~~v~~~---------~g~~i~~D~vi~a~G 230 (414)
++ ..+.+.+.+..++.|++++.+ .+.++.... ++. ..+.+. ++.++.+|+||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~-~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGP-YVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCc-EEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 012234555567789999865 466665321 122 234332 234799999999999
Q ss_pred CcC
Q 014997 231 AKP 233 (414)
Q Consensus 231 ~~p 233 (414)
...
T Consensus 197 ~~S 199 (450)
T PLN00093 197 ANS 199 (450)
T ss_pred cch
Confidence 755
No 261
>PRK07121 hypothetical protein; Validated
Probab=97.28 E-value=0.0039 Score=63.66 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=38.5
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-Cc--EEec-CEEEEccCCc
Q 014997 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAK 232 (414)
Q Consensus 180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~ 232 (414)
.+.+.+++.|+++++++.++++..++++++..|...+ ++ .+.+ +.||+|+|--
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~ 238 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF 238 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence 3444556778999999999998765556777666532 32 5788 9999999954
No 262
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.27 E-value=0.0034 Score=63.59 Aligned_cols=97 Identities=29% Similarity=0.423 Sum_probs=66.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc---------------------------------------------
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------------------------------------- 168 (414)
..|+|||+|..|+-+|..+++.|.+|+|+++.+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46999999999999999999999999998874210
Q ss_pred ---------------cc-----------cc------cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC
Q 014997 169 ---------------LQ-----------RL------FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED 216 (414)
Q Consensus 169 ---------------l~-----------~~------~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~ 216 (414)
+. +. ....+.+.+.+.+++.||+++.+ .+..+.. +++.+..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 00 00 01123334445556677887765 5666654 3456655655 4
Q ss_pred CcEEecCEEEEccCCcC
Q 014997 217 GSTIDADTIVIGIGAKP 233 (414)
Q Consensus 217 g~~i~~D~vi~a~G~~p 233 (414)
+..+.++.||+|+|...
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 56799999999999754
No 263
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.22 E-value=0.0042 Score=58.33 Aligned_cols=58 Identities=24% Similarity=0.362 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEe-cCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
....++..+++.|+.|+.+..++.++. ++.+..+.|.+.+|..+.++.+|+++|.--+
T Consensus 155 slk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 155 SLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred HHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 345567778999999999999988763 3355667899999999999999999997544
No 264
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.22 E-value=0.0039 Score=62.54 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecC-CCcEEEEEeC-CCcEEecCEEEEccC-CcCCChhhhh
Q 014997 179 QRYEQLYQQNGVKFVKGASIKNLEAGS-DGRVAAVKLE-DGSTIDADTIVIGIG-AKPTVSPFER 240 (414)
Q Consensus 179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~-~~~~~~v~~~-~g~~i~~D~vi~a~G-~~p~~~~l~~ 240 (414)
+.+.+.+++.|+++++++.++++..++ ++.+..+... ++..+.++.||+|+| +..|.+++.+
T Consensus 127 ~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 127 NALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 344455677889999999999987643 4666666554 335799999999999 4555555544
No 265
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.21 E-value=0.00093 Score=65.38 Aligned_cols=71 Identities=20% Similarity=0.397 Sum_probs=54.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------cCHH------HHHHHHHHHHhCCcEEEcCceEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------FTPS------LAQRYEQLYQQNGVKFVKGASIKN 200 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------~~~~------~~~~~~~~l~~~gv~i~~~~~v~~ 200 (414)
.++++|||||..|++.|..|++.|.+|+++++.+.+-.++ |+.. +...+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 5789999999999999999999999999999998764432 2221 222333444456899999999999
Q ss_pred EEe
Q 014997 201 LEA 203 (414)
Q Consensus 201 i~~ 203 (414)
+..
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 863
No 266
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.19 E-value=0.0011 Score=66.48 Aligned_cols=89 Identities=22% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc--------ccCHHHHHHHHHHHHhCCcEEEcCceEE-EEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKGASIK-NLE 202 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~--------~~~~~~~~~~~~~l~~~gv~i~~~~~v~-~i~ 202 (414)
.+++|.|||+|+.|+.+|..|++.|++||++++.+.+-.. .++.++.+...+.|++.|++|+.++.+- .+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~i- 200 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDI- 200 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcC-
Confidence 4689999999999999999999999999999988765221 1455778888889999999999988663 11
Q ss_pred ecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
.++. -.-++|.|++++|..
T Consensus 201 ----------t~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 ----------TLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred ----------CHHH-HHHhhCEEEEecccc
Confidence 1111 123459999999964
No 267
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.18 E-value=0.005 Score=64.02 Aligned_cols=51 Identities=25% Similarity=0.317 Sum_probs=37.1
Q ss_pred HHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997 182 EQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 182 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 233 (414)
.+.+++.||+++.++.++++..+ ++++..+.. .+|+ .+.++.||+|+|-..
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 33455668999999999998754 566665543 4564 589999999999643
No 268
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=97.17 E-value=0.0019 Score=51.44 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=25.0
Q ss_pred cEEEEEEeCCEEEEEEeecCChHHhhHHHHHHh
Q 014997 349 KIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 381 (414)
Q Consensus 349 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 381 (414)
|-++||+++++|+|+++ .|-...+...|++|+
T Consensus 100 kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 100 KGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp EEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred ceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 45789999999999997 788888889999875
No 269
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.14 E-value=0.0051 Score=62.60 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=28.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
.++|||+|+.|+.+|..+++.|.+|.++++
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 689999999999999999999999999995
No 270
>PLN02985 squalene monooxygenase
Probab=97.13 E-value=0.0062 Score=62.41 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..+|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 357999999999999999999999999999976
No 271
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.11 E-value=0.0078 Score=61.49 Aligned_cols=57 Identities=18% Similarity=0.387 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEec-CC--CcEEEEEeC-CCc-----EEecCEEEEccCCcC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAG-SD--GRVAAVKLE-DGS-----TIDADTIVIGIGAKP 233 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~-~~--~~~~~v~~~-~g~-----~i~~D~vi~a~G~~p 233 (414)
+..-+.+.++++||+|++++.|+++..+ ++ ++++.|... +|. ..+.|.||+++|.-.
T Consensus 228 LV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 228 LVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 3345566779999999999999999764 22 567777764 232 367999999999754
No 272
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.09 E-value=0.0036 Score=60.55 Aligned_cols=101 Identities=23% Similarity=0.373 Sum_probs=68.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccC----------HHHHHHHHHHHHhC--CcEEEcCceEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT----------PSLAQRYEQLYQQN--GVKFVKGASIK 199 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~----------~~~~~~~~~~l~~~--gv~i~~~~~v~ 199 (414)
+.++|||+|+|..|+-+...|-..-.+|++|.+++.++-..+- +.+.+-+....++. +++++.. .-.
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eA-ec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEA-ECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEec-ccE
Confidence 5689999999999999998888878999999998876432221 34445555555544 5666643 334
Q ss_pred EEEecCCCcEEE--EEeCCC----cEEecCEEEEccCCcCCC
Q 014997 200 NLEAGSDGRVAA--VKLEDG----STIDADTIVIGIGAKPTV 235 (414)
Q Consensus 200 ~i~~~~~~~~~~--v~~~~g----~~i~~D~vi~a~G~~p~~ 235 (414)
.++.+ .+.+. ..++++ ..+.+|.+|+|+|..+++
T Consensus 133 ~iDp~--~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 133 KIDPD--NKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred eeccc--ccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 44432 22222 233444 479999999999999886
No 273
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0091 Score=58.71 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=31.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
...+|+|||||.+|+-+|..|++.|.+|+++++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence 3568999999999999999999999999999976
No 274
>PRK08275 putative oxidoreductase; Provisional
Probab=97.08 E-value=0.0085 Score=62.11 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcC
Q 014997 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p 233 (414)
..+.+.+++.||+++.++.+.++..++++++..+. ..+|+ .+.++.||+|+|-..
T Consensus 141 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 141 KVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 44455566789999999999999764456666554 23564 588999999999754
No 275
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.07 E-value=0.0076 Score=63.00 Aligned_cols=54 Identities=19% Similarity=0.216 Sum_probs=39.4
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 233 (414)
.+.+.+++.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|+|--.
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34444566789999999999887554567777653 3554 688999999999653
No 276
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.05 E-value=0.0084 Score=62.87 Aligned_cols=32 Identities=31% Similarity=0.305 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 47999999999999999999999999999876
No 277
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.05 E-value=0.0083 Score=62.81 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=33.1
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+..+|+|||||..|+-+|..|++.|.+|+|+++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999864
No 278
>PRK07846 mycothione reductase; Reviewed
Probab=97.03 E-value=0.0026 Score=64.14 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=57.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-----cc-----------------------c-------C-HHHH
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RL-----------------------F-------T-PSLA 178 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-----~~-----------------------~-------~-~~~~ 178 (414)
.++|||+|+.|..+|.. ..|.+|.++++.. +-. .+ + + +.+.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 79 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIV 79 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCCC-CCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHH
Confidence 58999999999977654 5699999999751 100 00 0 0 0011
Q ss_pred HH-------H-----HHH-HHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 179 QR-------Y-----EQL-YQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 179 ~~-------~-----~~~-l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
++ + ... +++.||+++.+... -+. .. .|.+.+|+++.+|.+|+|||.+|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~-~~~---~~---~V~v~~g~~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 80 SRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHAR-FIG---PK---TLRTGDGEEITADQVVIAAGSRPVIP 143 (451)
T ss_pred HHHHHHHHHHhccchhhhhhhhCCcEEEEEEEE-Eec---CC---EEEECCCCEEEeCEEEEcCCCCCCCC
Confidence 11 1 111 44567777776422 121 11 56677788899999999999998644
No 279
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.02 E-value=0.0078 Score=62.94 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=33.7
Q ss_pred CcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997 189 GVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 232 (414)
Q Consensus 189 gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~ 232 (414)
||+++.++.+.++..++++++..+... +|+ .+.++.||+|||--
T Consensus 147 gV~i~~~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 147 LVEKYEGWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CcEEEeCcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 789999999998875555677776653 453 58899999999874
No 280
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0023 Score=62.55 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=29.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
--.|+|||||..|||.|.+.++.|.+.++++.+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 347999999999999999999999999888765
No 281
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.00 E-value=0.0012 Score=47.83 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.5
Q ss_pred EECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 138 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 138 VvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
|||+|.+|+.+|..|++.|.+|+++++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999987643
No 282
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.00 E-value=0.0073 Score=61.82 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=30.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999987
No 283
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.98 E-value=0.0066 Score=61.76 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=28.8
Q ss_pred CeEEEECCChHHHHHHHHHHhC-CCcEEEEee
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFP 164 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~ 164 (414)
-.++|||+|+.|+.+|..++++ |.+|.+|++
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 3689999999999999999996 899999996
No 284
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.97 E-value=0.01 Score=62.36 Aligned_cols=102 Identities=22% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCcccc-----------------------------------------
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ----------------------------------------- 170 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l~----------------------------------------- 170 (414)
.-+|+|||+|+.|+-+|..|+++ |.+|+|+++.+....
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 45899999999999999999995 999999997722100
Q ss_pred ----c------c--------------cC-HHHHHHHHHHHHhCC--cEEEcCceEEEEEecCCC-cEEEEEeC------C
Q 014997 171 ----R------L--------------FT-PSLAQRYEQLYQQNG--VKFVKGASIKNLEAGSDG-RVAAVKLE------D 216 (414)
Q Consensus 171 ----~------~--------------~~-~~~~~~~~~~l~~~g--v~i~~~~~v~~i~~~~~~-~~~~v~~~------~ 216 (414)
. . +. ..+.+.+.+.+++.| +++..++++++++.++++ ....+.+. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 0 0 00 013344555566655 578889999999765322 21234443 3
Q ss_pred C--cEEecCEEEEccCCcCC
Q 014997 217 G--STIDADTIVIGIGAKPT 234 (414)
Q Consensus 217 g--~~i~~D~vi~a~G~~p~ 234 (414)
| +++.||.||-|-|.+..
T Consensus 192 g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CceEEEEeCEEEECCCCchH
Confidence 5 57999999999998653
No 285
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0026 Score=59.80 Aligned_cols=100 Identities=27% Similarity=0.400 Sum_probs=77.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC--Ccc-----------cccccCHHHHHHHHHHHHhCCcEEEcCceEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKGASIK 199 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~--~~~-----------l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~ 199 (414)
.-.|+|||||+.|...|.+.+++|.+.-++..+ ..+ .+...++.+...+++..++..|++....+.+
T Consensus 211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhhh
Confidence 357999999999999999999998775443211 111 1223467888899999999999999888888
Q ss_pred EEEec-CCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 200 NLEAG-SDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 200 ~i~~~-~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
.+++. ..+....|++.+|-.+++..+|+++|.+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred cceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 87653 2344568999999999999999999975
No 286
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.95 E-value=0.012 Score=61.29 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=38.3
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 233 (414)
+.+..++.||+++.++.++++..++++++..+.. .+|+ .+.++.||+|||--.
T Consensus 149 L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 3344456788999999888887555677777654 3554 578999999999653
No 287
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.94 E-value=0.0087 Score=61.04 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=39.3
Q ss_pred HHHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEEeCC-C--cEEecCEEEEccCCcC
Q 014997 177 LAQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKP 233 (414)
Q Consensus 177 ~~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g--~~i~~D~vi~a~G~~p 233 (414)
+...+.+.+++ .||+++.++.++++..+ ++.+..+...+ + ..+.++.||+|+|-..
T Consensus 130 l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 130 VITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 33445555555 58999999999998754 55665554433 3 3689999999999754
No 288
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.91 E-value=0.01 Score=60.74 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=30.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.-.|+|||||.+|+-+|..|+++|.+|.++++.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999986
No 289
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.011 Score=61.17 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=38.2
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 233 (414)
.+.+.+++.||++++++.++++..++++++..+.. .+|+ .+.++.||+|+|-..
T Consensus 139 ~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 139 GLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34445566789999999999987554444665543 4564 588999999999743
No 290
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.90 E-value=0.0079 Score=60.26 Aligned_cols=95 Identities=27% Similarity=0.411 Sum_probs=63.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc------------------------------------cC-H-
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FT-P- 175 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~------------------------------------~~-~- 175 (414)
-.++|||+|+.|.-.|..++++|.+|.++++...+-..+ ++ +
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~ 84 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK 84 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence 468999999999999999999999999999884331000 00 0
Q ss_pred ----------HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC--CcEEecCEEEEccCCcCCC
Q 014997 176 ----------SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED--GSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 176 ----------~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~--g~~i~~D~vi~a~G~~p~~ 235 (414)
.....+...+++.||+++.+. -+|.. +. .|...+ .+++.++.+|+|||.+|..
T Consensus 85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~--a~f~~--~~---~v~V~~~~~~~~~a~~iiIATGS~p~~ 149 (454)
T COG1249 85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGE--ARFVD--PH---TVEVTGEDKETITADNIIIATGSRPRI 149 (454)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEE--EEECC--CC---EEEEcCCCceEEEeCEEEEcCCCCCcC
Confidence 011123344566688888764 33431 22 333333 4789999999999999974
No 291
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.90 E-value=0.012 Score=61.99 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=37.0
Q ss_pred HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 232 (414)
Q Consensus 183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~ 232 (414)
+.+++.||+++.++.+.++..+ ++++..|... +|+ .+.++.||+|+|--
T Consensus 178 ~~~~~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 178 RQIAAGTVKMYTRTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHhcCCEEEeceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 3456778999999999988754 5677766653 453 58999999999974
No 292
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.89 E-value=0.011 Score=61.44 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=37.5
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC---CCc--EEecCEEEEccCCc
Q 014997 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 232 (414)
Q Consensus 180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~---~g~--~i~~D~vi~a~G~~ 232 (414)
.+.+.+++.||+++.++.++++..+ +|++..+... +|+ .+.++.||+|+|--
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 197 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGGM 197 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence 3444455678999999999988754 6777776543 332 57899999999953
No 293
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.87 E-value=0.0032 Score=64.39 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
-.++|||+|+.|+.+|..++++|.+|.++++
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 4799999999999999999999999999995
No 294
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.86 E-value=0.016 Score=60.70 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++. |.+|.++++.
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~ 45 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA 45 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 3699999999999999999998 9999999875
No 295
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.0053 Score=61.92 Aligned_cols=82 Identities=22% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++++|+|+|.+|+.+|..|++.|.+|+++++... +.+.+. .+.+.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~~~-~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLKEA-LEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHHHH-HHHHHhcCCEEEeCCcchh-----------
Confidence 478999999999999999999999999999987541 122222 2345677888765443210
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
..-.+|.||.++|..++.+.+
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHH
Confidence 012479999999998887754
No 296
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.83 E-value=0.016 Score=60.49 Aligned_cols=32 Identities=25% Similarity=0.297 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999999875
No 297
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.83 E-value=0.019 Score=56.77 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=27.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCC---CcEEEEeeCCc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH 167 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~~~ 167 (414)
.+|+|||+|++|+.+|..|.+.- ..|+++++.++
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 47999999999999999998752 22888887733
No 298
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.82 E-value=0.014 Score=58.51 Aligned_cols=54 Identities=9% Similarity=0.228 Sum_probs=37.7
Q ss_pred HHHHHHHHHh-CCcEEEcCceEEEEEecCCCcEEEEE-eCCCc--EEecCEEEEccCCc
Q 014997 178 AQRYEQLYQQ-NGVKFVKGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAK 232 (414)
Q Consensus 178 ~~~~~~~l~~-~gv~i~~~~~v~~i~~~~~~~~~~v~-~~~g~--~i~~D~vi~a~G~~ 232 (414)
...+.+.+++ .||+++.++.+.++..+ ++++..+. ..++. .+.++.||+|+|-.
T Consensus 131 ~~~L~~~~~~~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 131 EKILLKKVKKRKNITIIENCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHhcCCCEEEECcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 3344445554 59999999999998654 45655543 33444 58999999999964
No 299
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.80 E-value=0.019 Score=59.86 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcC
Q 014997 179 QRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 179 ~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p 233 (414)
..+.+.+++.||+++.++.+.++..+ ++++..+. ..+|+ .+.++.||+|+|-..
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 34555566778999999999998653 56655554 34554 589999999999753
No 300
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.80 E-value=0.018 Score=60.59 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 51 ~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 51 YDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred cCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 36999999999999999999999999999876
No 301
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.80 E-value=0.0037 Score=67.26 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.4
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 167 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~ 167 (414)
+|+|||||+.|+-+|..|++. |.+|+|+++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998864
No 302
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.78 E-value=0.013 Score=57.65 Aligned_cols=83 Identities=20% Similarity=0.447 Sum_probs=56.5
Q ss_pred HHHHHHHHHhC-CcEEEcCceEEEEEecCCCc-EEEEE-eC--CCcEEecCEEEEccCCcCCChhhhhcCCcc--cCCCE
Q 014997 178 AQRYEQLYQQN-GVKFVKGASIKNLEAGSDGR-VAAVK-LE--DGSTIDADTIVIGIGAKPTVSPFERVGLNS--SVGGI 250 (414)
Q Consensus 178 ~~~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~-~~~v~-~~--~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~--~~g~i 250 (414)
.+.+.+.+++. |++++++++|+.+++.+++. ...+. +. +..++.++.|+++.|-..- .+|.++|++. .-|+.
T Consensus 184 Tr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gyggf 262 (488)
T PF06039_consen 184 TRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGYGGF 262 (488)
T ss_pred HHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhcccCCC
Confidence 34444555666 99999999999999887873 22221 22 3357999999999998763 6888888863 23455
Q ss_pred EEc-CCCCCCCC
Q 014997 251 QVD-GQFRTRMP 261 (414)
Q Consensus 251 ~vd-~~~~t~~~ 261 (414)
.|. .++++..|
T Consensus 263 PVsG~fl~~~n~ 274 (488)
T PF06039_consen 263 PVSGQFLRCKNP 274 (488)
T ss_pred cccceEEecCCH
Confidence 554 46666544
No 303
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.78 E-value=0.014 Score=57.15 Aligned_cols=92 Identities=20% Similarity=0.299 Sum_probs=66.0
Q ss_pred HHhCCCcEEEEee-CCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997 152 AVGWKLDTTIIFP-ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230 (414)
Q Consensus 152 l~~~g~~Vtlv~~-~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 230 (414)
.+..|+...++.- .+++-. -.-+.+.+.+.+.+++.|++++++++|..+... ++.+..+.+.+|.++++|.||+|+|
T Consensus 150 ~~aa~a~~eil~~~~rHiGT-D~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGT-DILPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHhCCCceeeeccccccCc-cchHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence 3444555544432 233333 234577778889999999999999999999864 4556788999999999999999999
Q ss_pred CcCCChhh----hhcCCccc
Q 014997 231 AKPTVSPF----ERVGLNSS 246 (414)
Q Consensus 231 ~~p~~~~l----~~~gl~~~ 246 (414)
.... +|+ ++.|+...
T Consensus 228 rsg~-dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 228 RSGR-DWFEMLHKKLGVKMR 246 (486)
T ss_pred cchH-HHHHHHHHhcCcccc
Confidence 9876 554 34455443
No 304
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.78 E-value=0.0051 Score=62.07 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=24.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.++|||+|+.|..+|. +..|.+|.++++.
T Consensus 4 D~vvIG~G~~g~~aa~--~~~g~~V~lie~~ 32 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDP--RFADKRIAIVEKG 32 (452)
T ss_pred CEEEECCCHHHHHHHH--HHCCCeEEEEeCC
Confidence 6899999999988754 4579999999975
No 305
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.70 E-value=0.017 Score=60.24 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=40.5
Q ss_pred HHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecC-EEEEccC-CcCCChhhhh
Q 014997 183 QLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 240 (414)
Q Consensus 183 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~l~~ 240 (414)
+..++.|++|++++.++++..+++|++..|... +|+ .+.+. .||+|+| +..|.+++++
T Consensus 221 ~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 221 LALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 344567899999999999987667888776553 343 47787 5888877 4555555544
No 306
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.68 E-value=0.023 Score=59.77 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 36999999999999999999999999999875
No 307
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=96.66 E-value=0.0065 Score=58.70 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
..+|+|||||..|+-+|..|.++|.+|.|++.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3579999999999999999999999999999763
No 308
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.65 E-value=0.032 Score=58.26 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=40.7
Q ss_pred HHHHHHHHHhCCcEEEcCceEEEEEecCC---CcEEEEEe---CCCc--EEecCEEEEccCCcC
Q 014997 178 AQRYEQLYQQNGVKFVKGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 233 (414)
Q Consensus 178 ~~~~~~~l~~~gv~i~~~~~v~~i~~~~~---~~~~~v~~---~~g~--~i~~D~vi~a~G~~p 233 (414)
...+.+.+++.||+++.++.++++..+++ +++..+.. .+|+ .+.++.||+|+|-..
T Consensus 143 ~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 143 LQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 34455556778999999999999875432 67666653 4554 588999999999754
No 309
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=96.60 E-value=0.044 Score=55.68 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred HHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE---eCCCc--EEecCEEEEccCCcCCChhhhhcCCc
Q 014997 181 YEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 244 (414)
Q Consensus 181 ~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g~--~i~~D~vi~a~G~~p~~~~l~~~gl~ 244 (414)
+.+.+. ..|+++++++.|..++..+++.. .+. ..+++ ++.+|.||+|.|.... .+++.+|+.
T Consensus 190 L~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 190 LAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 333444 35899999999999976534332 232 34442 6899999999998774 667777664
No 310
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.54 E-value=0.032 Score=58.18 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=28.5
Q ss_pred eEEEECCChHHHHHHHHHHhCC---CcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g---~~Vtlv~~~ 165 (414)
.|+|||+|..|+-+|..+++.| .+|+|+++.
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~ 40 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT 40 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc
Confidence 6999999999999999999998 799999865
No 311
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.52 E-value=0.0035 Score=61.83 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++|+|||||..|+++|..|+++|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976554
No 312
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.49 E-value=0.029 Score=58.55 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=29.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999999854
No 313
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.49 E-value=0.018 Score=59.64 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=27.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+. .|.+|.|+++.
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~ 40 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKD 40 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEcc
Confidence 47999999999999999986 48999999876
No 314
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.43 E-value=0.0082 Score=55.21 Aligned_cols=34 Identities=41% Similarity=0.564 Sum_probs=29.9
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC------CcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g------~~Vtlv~~~ 165 (414)
..++|+|+|||.+|+-+|.+|.+.+ ..||+++..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3489999999999999999999886 678998865
No 315
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.41 E-value=0.008 Score=53.70 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=53.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++++|||||.+|..-+..|.+.|.+|+++.+.. .++ +.+..++.+|+++.+. +
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~-------~~~----l~~l~~~~~i~~~~~~----~---------- 62 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL-------ESE----LTLLAEQGGITWLARC----F---------- 62 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC-------CHH----HHHHHHcCCEEEEeCC----C----------
Confidence 57899999999999999999999999999997542 222 2333333345554321 0
Q ss_pred EEeCCCcEEecCEEEEccCCc-CCChhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAK-PTVSPF 238 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~-p~~~~l 238 (414)
..+..-.+++||.|||.. .|..+.
T Consensus 63 ---~~~dl~~~~lVi~at~d~~ln~~i~ 87 (205)
T TIGR01470 63 ---DADILEGAFLVIAATDDEELNRRVA 87 (205)
T ss_pred ---CHHHhCCcEEEEECCCCHHHHHHHH
Confidence 011122489999999986 554443
No 316
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.41 E-value=0.041 Score=57.35 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=40.9
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC-Cc--EEec-CEEEEccCCcC-CChhhhh
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP-TVSPFER 240 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-g~--~i~~-D~vi~a~G~~p-~~~~l~~ 240 (414)
+.+.+++.|++++.++.+.++..+ ++++..|...+ |+ .+.+ +.||+|+|--. |.+++++
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 445567789999999999998754 67777776543 33 4776 68999998654 4344443
No 317
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.40 E-value=0.037 Score=58.21 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=29.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.++|||+|+.|..+|..++++|.+|.+|++.
T Consensus 117 yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 117 YDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 37999999999999999999999999999853
No 318
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.39 E-value=0.025 Score=58.02 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=27.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..|+|||+|..|+-+|..+++ |.+|+++++.
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~ 34 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKK 34 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence 479999999999999999876 8899998875
No 319
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.34 E-value=0.033 Score=56.42 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..-.|+|||||.+|+-+|..++.+|.+|.+++++
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~ 44 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG 44 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence 3457999999999999999999999999999987
No 320
>PLN02815 L-aspartate oxidase
Probab=96.32 E-value=0.033 Score=58.11 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.| +|.|+++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 89998875
No 321
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.28 E-value=0.057 Score=57.08 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=29.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~ 37 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV 37 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36999999999999999999999999999854
No 322
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.22 E-value=0.0076 Score=54.65 Aligned_cols=91 Identities=19% Similarity=0.294 Sum_probs=57.3
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEE------------cCceEEE
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV------------KGASIKN 200 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~------------~~~~v~~ 200 (414)
+.+|||||..|+.||..|+.+ ..+|.++..++-+-+ . .--..+.+++++..|+=. .+. |..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks-v---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~~~-v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-V---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFLND-VVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-H---hhHHHHHHHHHhcCccccchhhhcccHHHHHHh-hhh
Confidence 368999999999999999876 457777776542211 0 111123334444333211 011 233
Q ss_pred EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+.. ....+++.+|.++.++.+++|+|++|.
T Consensus 76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred hcc----ccceEEecCCceeeEEEEEEecCCCcc
Confidence 321 112688999999999999999999996
No 323
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.18 E-value=0.061 Score=56.14 Aligned_cols=54 Identities=30% Similarity=0.426 Sum_probs=39.2
Q ss_pred HHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc-EEec-CEEEEccCCcCC
Q 014997 180 RYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-TIDA-DTIVIGIGAKPT 234 (414)
Q Consensus 180 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~-~i~~-D~vi~a~G~~p~ 234 (414)
.+.+.+++.|++++.++.++++..+ ++++..|.. .++. .+.+ +.||+|+|.-.+
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3445567789999999999998754 566665544 3333 5788 999999987654
No 324
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.17 E-value=0.035 Score=56.96 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=34.9
Q ss_pred HHHHHHHhC-CcEEEcCceEEEEEecCCCcEEEEEeC-CCc--EEecCEEEEccCCc
Q 014997 180 RYEQLYQQN-GVKFVKGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIGAK 232 (414)
Q Consensus 180 ~~~~~l~~~-gv~i~~~~~v~~i~~~~~~~~~~v~~~-~g~--~i~~D~vi~a~G~~ 232 (414)
.+.+.+++. ||+++.++.++++..+ ++++..+... ++. .+.++.||+|+|--
T Consensus 141 ~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~ 196 (513)
T PRK07512 141 ALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGI 196 (513)
T ss_pred HHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCC
Confidence 344444443 7888888888887643 5666665543 232 58999999999974
No 325
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.056 Score=51.77 Aligned_cols=90 Identities=16% Similarity=0.251 Sum_probs=63.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccc---------cCHHHHHHHHHHHHhCCcEEEcCceE-EE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL---------FTPSLAQRYEQLYQQNGVKFVKGASI-KN 200 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~---------~~~~~~~~~~~~l~~~gv~i~~~~~v-~~ 200 (414)
..+|.|||+|+.|+-.|..|.++ +.+|+++++.+.++.-. .-+.+-+.+.+.++.....+..|.+| +.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~d 99 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRD 99 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceeccc
Confidence 34999999999999999998874 58999999988664310 11234455777777778888877655 21
Q ss_pred EEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 201 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 201 i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
+ .+.+ -+-.+|.|++|.|...+
T Consensus 100 v-----------sl~e-L~~~ydavvLaYGa~~d 121 (468)
T KOG1800|consen 100 V-----------SLKE-LTDNYDAVVLAYGADGD 121 (468)
T ss_pred c-----------cHHH-HhhcccEEEEEecCCCC
Confidence 1 2211 12358999999998755
No 326
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.16 E-value=0.041 Score=51.50 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=37.0
Q ss_pred cEEEcCceEEEEEecCCCcEEEEEeCC--C--cEEecCEEEEccCCcCC--Chhhhh
Q 014997 190 VKFVKGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPT--VSPFER 240 (414)
Q Consensus 190 v~i~~~~~v~~i~~~~~~~~~~v~~~~--g--~~i~~D~vi~a~G~~p~--~~~l~~ 240 (414)
+++.++++|..|.+ .+|++..|+.-| | ..+.+|.||+|+|--.. .++|++
T Consensus 160 ~ki~~nskvv~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~ysd~~lLKe 215 (477)
T KOG2404|consen 160 VKILLNSKVVDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGYSDKELLKE 215 (477)
T ss_pred Hhhhhcceeeeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCcChHHHHHH
Confidence 78899999999984 578887777633 3 35889999999986543 345554
No 327
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.13 E-value=0.1 Score=54.59 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=27.5
Q ss_pred eEEEECCChHHHHHHHHHH----hCCCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~----~~g~~Vtlv~~~ 165 (414)
.|+|||+|..|+-+|..++ +.|.+|+|+++.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 3899999999999999998 678999999875
No 328
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.12 E-value=0.011 Score=61.49 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=76.7
Q ss_pred cCCCeEEEECCCh--HHHHHHHHHHhCCCcEEEEeeCCcccccc-------------cCHHHHHHHHHHHHhCCcEEEcC
Q 014997 131 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------FTPSLAQRYEQLYQQNGVKFVKG 195 (414)
Q Consensus 131 ~~~~~vvVvGgG~--~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-------------~~~~~~~~~~~~l~~~gv~i~~~ 195 (414)
...+++.|+|+|. ++.+++..+...+.+++++.+..+++... .+..+...+.+.+++.|++++.+
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~ 234 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG 234 (574)
T ss_pred CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence 3567888999998 89999999999998888776655554321 11345666777788999999999
Q ss_pred ceEEEEEecCCCcEEEEEeCC--Cc-EEecC-EEEEccCCcCC
Q 014997 196 ASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 234 (414)
Q Consensus 196 ~~v~~i~~~~~~~~~~v~~~~--g~-~i~~D-~vi~a~G~~p~ 234 (414)
+.++++..+ ++++..|...+ ++ .+.++ .||+|+|..++
T Consensus 235 ~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 235 TPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 999999754 56776665533 33 47786 79999997764
No 329
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.11 E-value=0.037 Score=53.53 Aligned_cols=104 Identities=19% Similarity=0.302 Sum_probs=75.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC------CCcEEEEeeCCcc------------------ccc----------------
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHL------------------LQR---------------- 171 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~------------------l~~---------------- 171 (414)
..-.|+|||+|+.|+..|..|.++ ..+|.+++....+ ++.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 345799999999999999988754 3456777765211 000
Q ss_pred ----------------ccC---------HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCC----------
Q 014997 172 ----------------LFT---------PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLED---------- 216 (414)
Q Consensus 172 ----------------~~~---------~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~---------- 216 (414)
.++ ..+..++-+..++.||+++++....++--+++|.+..|-++|
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pK 234 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPK 234 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcc
Confidence 000 124567777789999999999999999888899888887654
Q ss_pred -----CcEEecCEEEEccCCcCCC
Q 014997 217 -----GSTIDADTIVIGIGAKPTV 235 (414)
Q Consensus 217 -----g~~i~~D~vi~a~G~~p~~ 235 (414)
|-++.+..-|+|-|.+...
T Consensus 235 d~FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 235 DTFERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred ccccccceecceeEEEeccccchh
Confidence 3368888999999988754
No 330
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.10 E-value=0.072 Score=55.56 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.6
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 165 (414)
.|+|||+|..|+-+|..+++. |.+|+|+++.
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~ 38 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKV 38 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 699999999999999999876 4789999876
No 331
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=96.09 E-value=0.0052 Score=59.24 Aligned_cols=48 Identities=29% Similarity=0.356 Sum_probs=41.6
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCC--CEEEeCCCcEEecCeEEEccCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT 99 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~--~~V~~~~g~~~~yd~LviAtG~~ 99 (414)
....+++.||+++++++|.+++.++ ..|.+.+|+++.+|.||||||..
T Consensus 117 ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 117 LLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred HHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCc
Confidence 3455678899999999999999885 68889999889999999999954
No 332
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.03 E-value=0.086 Score=54.93 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=27.6
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 165 (414)
.|+|||+|..|+-+|..+++. |.+|+|+++.
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~ 37 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKV 37 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 699999999999999999876 5799999876
No 333
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=95.92 E-value=0.048 Score=51.66 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
+..+|+|||+|.+|+.+|..|+++ .+||+++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~ 39 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD 39 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecc
Confidence 457899999999999999999876 688888765
No 334
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.88 E-value=0.029 Score=50.04 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
.+++++|||||.+|...|..|.+.|.+|+++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 679999999999999999999999999999964
No 335
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.88 E-value=0.012 Score=59.88 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=35.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
+.++|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCc
Confidence 457999999999999999999999999999999877643
No 336
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.87 E-value=0.004 Score=57.98 Aligned_cols=103 Identities=24% Similarity=0.324 Sum_probs=62.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC-C-CcEEEEeeCCc-ccccc---cCHHHHHHHHHH------HHhCCcEEEcCceEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGW-K-LDTTIIFPENH-LLQRL---FTPSLAQRYEQL------YQQNGVKFVKGASIK 199 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~-g-~~Vtlv~~~~~-~l~~~---~~~~~~~~~~~~------l~~~gv~i~~~~~v~ 199 (414)
+.-+|+|||||.-|+-+|..+.++ + -+|-++++.+. ..... .+..+.. +.+. +--.|...+. ..|+
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~-l~~srr~~a~liP~~a~wi~-ekv~ 115 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKS-LDSSRRKQASLIPKGATWIK-EKVK 115 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhh-hhhccCcccccccCCcHHHH-HHHH
Confidence 456899999999999999988764 3 35777776542 11111 1111111 1110 0001111111 3456
Q ss_pred EEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997 200 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 200 ~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
+++++.+ .|.+.+|++|.+|.+|+|.|..-+.+.++.
T Consensus 116 ~f~P~~N----~v~t~gg~eIsYdylviA~Giql~y~~IkG 152 (446)
T KOG3851|consen 116 EFNPDKN----TVVTRGGEEISYDYLVIAMGIQLDYGKIKG 152 (446)
T ss_pred hcCCCcC----eEEccCCcEEeeeeEeeeeeceeccchhcC
Confidence 6665432 688999999999999999999877665443
No 337
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.84 E-value=0.089 Score=59.36 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 410 ~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~ 441 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKE 441 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence 36999999999999999999999999999976
No 338
>PRK12839 hypothetical protein; Provisional
Probab=95.77 E-value=0.11 Score=54.07 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=40.2
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe--CCCc-E-EecCEEEEccCCc-CCChhhh
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL--EDGS-T-IDADTIVIGIGAK-PTVSPFE 239 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~--~~g~-~-i~~D~vi~a~G~~-p~~~~l~ 239 (414)
+.+..++.|++++.++.++++..++++++..|.. .+|+ . ..++.||+|+|-- -|.++++
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 4455577899999999999987555677777754 3443 2 3458999999754 3444433
No 339
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.77 E-value=0.15 Score=52.78 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=27.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++. .+|+++++.
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~ 39 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG 39 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEecc
Confidence 3699999999999999999876 789998876
No 340
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.66 E-value=0.023 Score=47.87 Aligned_cols=84 Identities=14% Similarity=0.235 Sum_probs=55.2
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeC
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLE 215 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~ 215 (414)
|+|+|+|.+|+-+|..|.+.|.+|+++.|.+ .. +.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~-------------~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RL-------------EAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HH-------------HHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cH-------------HhhhheeEEEEecccceeccc-------ccccC
Confidence 6899999999999999999999999998754 11 236777888877652111211 11222
Q ss_pred CC--cEEecCEEEEccCCcCCChhhhh
Q 014997 216 DG--STIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 216 ~g--~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
.. ..-++|.||+|+-.....+.++.
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~~ 86 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQS 86 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHHH
Confidence 21 23468999999876555444443
No 341
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.052 Score=54.88 Aligned_cols=83 Identities=20% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++|.|+|.|.+|+-+|..|.++|.+|++.++.+... .+ ...+.+++.|+.+..+..-. . .
T Consensus 13 ~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~-----~~~~~l~~~gi~~~~~~~~~-------~---~ 74 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LG-----EVSNELKELGVKLVLGENYL-------D---K 74 (458)
T ss_pred cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---ch-----HHHHHHHhCCCEEEeCCCCh-------H---H
Confidence 36899999999999999999999999999988765211 01 11133677788887542100 0 0
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
.-++|+||+++|..|..+.+.
T Consensus 75 -------~~~~dlVV~Spgi~~~~p~~~ 95 (458)
T PRK01710 75 -------LDGFDVIFKTPSMRIDSPELV 95 (458)
T ss_pred -------hccCCEEEECCCCCCCchHHH
Confidence 124799999999998766553
No 342
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.64 E-value=0.02 Score=59.43 Aligned_cols=107 Identities=20% Similarity=0.213 Sum_probs=75.9
Q ss_pred CCCeEEEECCChHHHHHHHH-------HHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEec
Q 014997 132 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAG 204 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~-------l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~ 204 (414)
.++.++++|++.++++.+.. +.+++.+|++.......+. .++..+...+.+.+++.|+++++++.++++..+
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~ 237 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLLNTPLTDLYVE 237 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEEe
Confidence 35678899999999998864 5566777777655443332 356677778888889999999999999999864
Q ss_pred CCCcEEEEEeC-CCc--EEecC-EEEEccC-CcCCChhhhh
Q 014997 205 SDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFER 240 (414)
Q Consensus 205 ~~~~~~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~~l~~ 240 (414)
++++..|... +++ .+.++ .||+|+| +.+|.++++.
T Consensus 238 -~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 238 -DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred -CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 5667666553 443 47785 5888655 6666555544
No 343
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.61 E-value=0.037 Score=56.00 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=58.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+|.|||.|.+|+.+|..|.++|.+|+++++.... .. ......+++.|++++.+.... .. .+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~-------~~-~~~~~~l~~~gi~~~~g~~~~-~~--------~~~- 63 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP-------EL-LERQQELEQEGITVKLGKPLE-LE--------SFQ- 63 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch-------hh-HHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence 5899999999999999999999999999876532 11 122244677799998764221 00 000
Q ss_pred CCCcEEecCEEEEccCCcCCChhhh
Q 014997 215 EDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 215 ~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
. ..-.+|.||.++|..++.+.+.
T Consensus 64 -~-~~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 64 -P-WLDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred -H-HhhcCCEEEECCCCCCCCHHHH
Confidence 0 0124799999999998876543
No 344
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.60 E-value=0.016 Score=58.24 Aligned_cols=36 Identities=31% Similarity=0.418 Sum_probs=32.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL 169 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~l 169 (414)
++|+|||||.+|+-+|..|++.| .+|+|++.++++-
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999987 8999999887653
No 345
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.58 E-value=0.14 Score=52.60 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=28.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+| .|+-+|..+++.|.+|.|+++.
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 479999999 9999999999999999999865
No 346
>PRK07233 hypothetical protein; Provisional
Probab=95.53 E-value=0.018 Score=57.57 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
+|+|||+|..|+-+|..|++.|.+|+|+++.+++-
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCC
Confidence 58999999999999999999999999999987663
No 347
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=95.51 E-value=0.19 Score=52.09 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=30.0
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
-.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999998765
No 348
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.43 E-value=0.23 Score=51.58 Aligned_cols=32 Identities=41% Similarity=0.383 Sum_probs=28.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 36899999999999999999999999988865
No 349
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.41 E-value=0.1 Score=51.55 Aligned_cols=96 Identities=23% Similarity=0.413 Sum_probs=65.2
Q ss_pred EEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccc--cccCHHH---------HHHHHHHHHhCCcEEEcCceEEEEE
Q 014997 136 VVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--RLFTPSL---------AQRYEQLYQQNGVKFVKGASIKNLE 202 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~--~~~~~~~---------~~~~~~~l~~~gv~i~~~~~v~~i~ 202 (414)
++|+|+|..|+.+|..+++. ..+++++...+.... ......+ ........++.+++++.++.+..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 47999999999999998875 467777666543211 0011100 0000111146789999999999997
Q ss_pred ecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh
Q 014997 203 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 203 ~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
... + .+.+.+| ++.+|.+++++|.+|...
T Consensus 81 ~~~--~--~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 PEN--K--VVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred CCC--C--EEEECCC-cccccEEEEcCCCcccCC
Confidence 432 2 5777888 899999999999998754
No 350
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.40 E-value=0.05 Score=54.80 Aligned_cols=81 Identities=17% Similarity=0.163 Sum_probs=56.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV 209 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~ 209 (414)
.+++++|+|.|.+|+.+|..|+++|.+|++.+..+.. +. . +.+++ .|++++.+.....
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-~----~~l~~~~~gi~~~~g~~~~~--------- 63 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-V----AQIGKMFDGLVFYTGRLKDA--------- 63 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-H----HHHhhccCCcEEEeCCCCHH---------
Confidence 3689999999999999999999999999998765431 11 1 12343 4777765431100
Q ss_pred EEEEeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997 210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
..-.+|+||+++|..|..+.++.
T Consensus 64 --------~~~~~d~vv~spgi~~~~p~~~~ 86 (445)
T PRK04308 64 --------LDNGFDILALSPGISERQPDIEA 86 (445)
T ss_pred --------HHhCCCEEEECCCCCCCCHHHHH
Confidence 01257999999999998776543
No 351
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.021 Score=56.95 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=34.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
+||+|+|+|..|+-+|..|++.|.+||++++++++-.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999999999999987643
No 352
>PTZ00367 squalene epoxidase; Provisional
Probab=95.38 E-value=0.029 Score=58.04 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=31.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999875
No 353
>PLN02268 probable polyamine oxidase
Probab=95.38 E-value=0.022 Score=57.12 Aligned_cols=37 Identities=24% Similarity=0.409 Sum_probs=33.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
.+|+|||+|.+|+-+|..|.+.|.+|+|++.++++-.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 3799999999999999999999999999998877643
No 354
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.34 E-value=0.054 Score=54.56 Aligned_cols=82 Identities=23% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++++|+|+|.+|+.+|..|++.|.+|++.++..... . ...+.+++.|+++..+.....+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~-----~----~~~~~l~~~g~~~~~~~~~~~~---------- 64 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSE-----N----PEAQELLEEGIKVICGSHPLEL---------- 64 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccc-----h----hHHHHHHhcCCEEEeCCCCHHH----------
Confidence 46889999999999999999999999999987543211 1 1123456778887654311100
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
+.. .+|.||.++|..++..++
T Consensus 65 --~~~----~~d~vV~s~gi~~~~~~~ 85 (447)
T PRK02472 65 --LDE----DFDLMVKNPGIPYTNPMV 85 (447)
T ss_pred --hcC----cCCEEEECCCCCCCCHHH
Confidence 000 479999999998876654
No 355
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=95.30 E-value=0.17 Score=52.56 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe-CCCc--EEec-CEEEEccCCc-CCChhhh
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL-EDGS--TIDA-DTIVIGIGAK-PTVSPFE 239 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~-~~g~--~i~~-D~vi~a~G~~-p~~~~l~ 239 (414)
+.+.+++.||++++++.++++..+ ++++..|.. .+|. .+.+ ..||+|+|-- -|.++++
T Consensus 223 L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 223 LFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 334466789999999999998753 677777644 2343 3555 5788888854 4434443
No 356
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.025 Score=57.69 Aligned_cols=36 Identities=28% Similarity=0.391 Sum_probs=33.0
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
..+|+|||+|..|+-+|..|++.|.+|+|+++.+.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~ 38 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRV 38 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCC
Confidence 467999999999999999999999999999988655
No 357
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.21 E-value=0.065 Score=53.34 Aligned_cols=82 Identities=23% Similarity=0.232 Sum_probs=59.9
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
+++|+|+|-|-+|+.+|..|.++|.+|++.+..+.. .. .. ...+...+|++..+..-.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~------------- 64 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD------------- 64 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch-------------
Confidence 899999999999999999999999999999866533 11 01 113345677776654221
Q ss_pred EeCCCcEEecCEEEEccCCcCCChhhhh
Q 014997 213 KLEDGSTIDADTIVIGIGAKPTVSPFER 240 (414)
Q Consensus 213 ~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (414)
. ..-.+|.||.++|..|+.++++.
T Consensus 65 --~--~~~~~d~vV~SPGi~~~~p~v~~ 88 (448)
T COG0771 65 --E--DLAEFDLVVKSPGIPPTHPLVEA 88 (448)
T ss_pred --h--ccccCCEEEECCCCCCCCHHHHH
Confidence 0 13468999999999999886543
No 358
>PRK07208 hypothetical protein; Provisional
Probab=95.13 E-value=0.03 Score=56.90 Aligned_cols=38 Identities=21% Similarity=0.302 Sum_probs=34.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
+.++|+|||+|.+|+-+|..|.+.|.+|+++++.+++.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~G 40 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVG 40 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 45689999999999999999999999999999887653
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.10 E-value=0.27 Score=54.05 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-+|..+++.|.+|+++++.
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~ 45 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKA 45 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 46999999999999999999999999999865
No 360
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.09 E-value=0.063 Score=48.38 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
++++|+|||||.+|..=+..|.+.|.+|||+.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999653
No 361
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.02 E-value=0.15 Score=52.38 Aligned_cols=55 Identities=20% Similarity=0.308 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+.+.+....++.|..++.++.|+++....++. ..|++.-|. |++..+|-|+|+-.
T Consensus 189 lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~-~gVeT~~G~-iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 189 LCQALARAASALGALVIENCPVTGLHVETDKF-GGVETPHGS-IETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHhcCcEEEecCCcceEEeecCCc-cceeccCcc-eecceEEechhHHH
Confidence 44556666788999999999999997654433 378888874 99999999999754
No 362
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.00 E-value=0.057 Score=52.31 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=57.0
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcc--cccc---------------------------------------
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL--LQRL--------------------------------------- 172 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~--l~~~--------------------------------------- 172 (414)
.++.||.|+..+-+|..|...+ .++..+++.+.+ -+.+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5789999999999999998876 778888876432 0000
Q ss_pred ------c---CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC--cEEEEEe----CCCcEEecCEEEEccCCcCCCh
Q 014997 173 ------F---TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG--RVAAVKL----EDGSTIDADTIVIGIGAKPTVS 236 (414)
Q Consensus 173 ------~---~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~--~~~~v~~----~~g~~i~~D~vi~a~G~~p~~~ 236 (414)
+ -.+..++++-..++.+-.+..+.+|++|+...++ ....|.+ .+++.+.|+.||+++|..|..+
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 0 0112223322223344447789999999865443 3445665 2346899999999999988754
No 363
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=94.98 E-value=0.049 Score=53.45 Aligned_cols=60 Identities=18% Similarity=0.349 Sum_probs=48.3
Q ss_pred CccccCCCCCC----CCHhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCC
Q 014997 40 FHTCVGSGGER----QTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT 99 (414)
Q Consensus 40 ~~~~~g~~~~~----~~~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~ 99 (414)
.....|++.+. +..+++++.|++++++++|..|+.+.. .|.+.+|.++.+|+||+|+|-.
T Consensus 163 ~~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grs 229 (486)
T COG2509 163 YQRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRS 229 (486)
T ss_pred cccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcc
Confidence 34455666433 345778889999999999999998774 7889999999999999999964
No 364
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.96 E-value=0.062 Score=53.79 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=42.2
Q ss_pred HhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCC
Q 014997 53 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
.+.+++.||+++.+++|.+++.++..+.+.+|+++.||.||+|+|.+|.
T Consensus 186 ~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 186 EEELKKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHHHHHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 4667888999999999999998776556778889999999999999865
No 365
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.93 E-value=0.053 Score=54.89 Aligned_cols=79 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred cCCCeEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcE
Q 014997 131 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRV 209 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~ 209 (414)
.+++++.|+|-|-+|+- +|..|.++|.+|++.+.... +. . +.|++.|+++..+....
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~----~-~~l~~~gi~~~~~~~~~---------- 62 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV----T-QRLLELGAIIFIGHDAE---------- 62 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCHH----------
Confidence 45689999999999999 79999999999999876542 11 1 23667788887532110
Q ss_pred EEEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
.+ -.+|.||+++|..|+.+.++
T Consensus 63 ---~~-----~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 63 ---NI-----KDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred ---HC-----CCCCEEEECCCCCCCCHHHH
Confidence 01 13799999999998776543
No 366
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.91 E-value=0.036 Score=56.63 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=32.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~ 36 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQP 36 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57999999999999999999999999999998765
No 367
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.89 E-value=0.047 Score=46.55 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEe
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 163 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~ 163 (414)
.+++|+|||||..|...+..|.+.|.+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999994
No 368
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.89 E-value=0.024 Score=44.62 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
++++++|||||..|..-+..|.+.|.+|+++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 68999999999999999999999999999997653
No 369
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.83 E-value=0.039 Score=60.55 Aligned_cols=26 Identities=42% Similarity=0.796 Sum_probs=23.8
Q ss_pred CCCEEEcCCCCCCCCcEEEEcccccc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAF 272 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~ 272 (414)
.|||.||.+++|++||+||+|||+..
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~ 386 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACV 386 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCc
Confidence 47999999999999999999999764
No 370
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=94.76 E-value=0.04 Score=55.66 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=32.5
Q ss_pred CeEEEECCChHHHHHHHHHHhC----CCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~~~~ 168 (414)
++|+|||||.+|+-+|..|.+. |.+|+|+++++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~ 41 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV 41 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence 5799999999999999999998 9999999998765
No 371
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.73 E-value=0.029 Score=55.48 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=50.7
Q ss_pred CCCCCCCcc-ccCCCCCCCCHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCC--cEEecCeEEEccCCC
Q 014997 34 PARLPGFHT-CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSG--KLLKYGSLIVATGCT 99 (414)
Q Consensus 34 ~~~l~~~~~-~~g~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g--~~~~yd~LviAtG~~ 99 (414)
..++|.+|+ +.|..+.....+.+++.|++++.+++|+++..++.. |.++++ ..+.+|++|||||+.
T Consensus 250 v~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw 321 (419)
T TIGR03378 250 LCELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSF 321 (419)
T ss_pred EEeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCC
Confidence 445566654 566666666778889999999999999998876653 445665 479999999999987
No 372
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=94.70 E-value=0.075 Score=42.25 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=43.7
Q ss_pred EEEEEEe--CCEEEEEEeecCChHHhhHH-HHHHhCCCCCChhh--hcCCCcHHHHHHHHh
Q 014997 350 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDKAK--LQQASSVEEALEIAR 405 (414)
Q Consensus 350 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ 405 (414)
+.++.++ +++|+|+.+++.++.++... ..+|+.+.+++... +..+|+++|++.+|+
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 5566665 59999999977777776554 45678999888622 789999999999885
No 373
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.67 E-value=0.036 Score=56.77 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=30.9
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
|+|||+|..|+-+|..|++.|.+|+|+++++++
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~ 33 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKP 33 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 589999999999999999999999999998765
No 374
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.66 E-value=0.035 Score=53.22 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
...|+|||+|..|..+|..|.+.|.+|++++|.-
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4569999999999999999999999999999873
No 375
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=94.64 E-value=0.051 Score=50.93 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=35.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFT 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 174 (414)
+.+|||+|++|.-+|..++++|++|.+|++++++.....+
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccc
Confidence 5789999999999999999999999999999887655443
No 376
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.59 E-value=0.11 Score=49.65 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=30.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+|+|+|+|.+|.-+|..|++.|.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 469999999999999999999999999998853
No 377
>PRK08275 putative oxidoreductase; Provisional
Probab=94.49 E-value=0.048 Score=56.59 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCC-CCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIE-KQTL------ITNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~-~~~V------~~~~g~--~~~yd~LviAtG~~~~ 101 (414)
...+.+++.||+++.++.|+++-.+ +..+ .+.+|+ .+.++.||||||....
T Consensus 142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (554)
T PRK08275 142 VLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence 3445566789999999999998654 3222 133564 4789999999998653
No 378
>PLN02576 protoporphyrinogen oxidase
Probab=94.49 E-value=0.054 Score=55.31 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhC-CCcEEEEeeCCccc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLL 169 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~-g~~Vtlv~~~~~~l 169 (414)
..+|+|||||.+|+-+|..|.+. |.+|+|+++.+++-
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 45799999999999999999999 99999999987764
No 379
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.45 E-value=0.1 Score=51.04 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=38.5
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEEEeCCC-cEEecCeEEEccCCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTA 100 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V~~~~g-~~~~yd~LviAtG~~~ 100 (414)
....+++.||+++++++|++|+.....|.+..+ ..+.+|+||||||+.+
T Consensus 92 L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 92 WLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 345567899999999999999554456776543 4699999999999865
No 380
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.43 E-value=0.052 Score=54.75 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=31.8
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 58999999999999999999999999999887543
No 381
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.35 E-value=0.29 Score=46.81 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=29.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.+|.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 57999999999999999999999999999875
No 382
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.30 E-value=0.13 Score=52.54 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=55.6
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~ 210 (414)
..+++++|+|.|.+|+.++..|..+|.+|++.+..+ .. . +.+++.|+.+..+... ..
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~--------~~----~-~~l~~~g~~~~~~~~~-------~~--- 66 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDP--------DA----L-RPHAERGVATVSTSDA-------VQ--- 66 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH--------HH----H-HHHHhCCCEEEcCcch-------Hh---
Confidence 467899999999999999999999999999876432 01 1 2255578877643210 00
Q ss_pred EEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 211 AVKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
..-.+|.||.++|..++.+.++
T Consensus 67 -------~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 67 -------QIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred -------HhhcCCEEEECCCCCCCCHHHH
Confidence 0123699999999998876543
No 383
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.29 E-value=0.057 Score=54.67 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=31.5
Q ss_pred CeEEEECCChHHHHHHHHHHhC------CCcEEEEeeCCccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLL 169 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~------g~~Vtlv~~~~~~l 169 (414)
++|+|||+|.+|+-+|..|.+. +.+|+|++.++++-
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 5799999999999999999985 37899999987763
No 384
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=94.24 E-value=0.075 Score=46.44 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=30.3
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
+|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~ 36 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE 36 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 589999999999999999999999999998765443
No 385
>PLN02612 phytoene desaturase
Probab=94.23 E-value=0.2 Score=52.16 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCC
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~ 231 (414)
..+.+.+.+.+++.|.+|++++.|++|..++++.+..+.+.+|+++.+|.||++++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 345667777788899999999999999876677666788888989999999999764
No 386
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=94.22 E-value=0.079 Score=52.58 Aligned_cols=48 Identities=27% Similarity=0.381 Sum_probs=31.7
Q ss_pred HhHHHHcCCeEEcCCcEEEEeCCCC---EEEeCCCcEEecCeEEEccCCCC
Q 014997 53 PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTA 100 (414)
Q Consensus 53 ~~~~~~~~i~~~~~~~V~~id~~~~---~V~~~~g~~~~yd~LviAtG~~~ 100 (414)
...+++.||+++++++|.+|..++. .|.++++..+.+|+||||||+..
T Consensus 116 ~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 116 LEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCC
Confidence 3445678999999999999976443 57777778899999999999864
No 387
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.17 E-value=0.47 Score=46.50 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCcEEEEeeCCcccccc-cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCC-cEEec
Q 014997 145 GMEVAAAAVGWKLDTTIIFPENHLLQRL-FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDG-STIDA 222 (414)
Q Consensus 145 g~e~A~~l~~~g~~Vtlv~~~~~~l~~~-~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g-~~i~~ 222 (414)
.-++-..+.++|.... .++..++.|.. -..++.+.+...+++.||++++++.|++|+ + ++ ..+.+.++ ..+.|
T Consensus 56 ~~d~~~fF~~~Gi~~~-~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~-~-~~--~~v~~~~~~~~~~a 130 (376)
T TIGR03862 56 AVALQDWARGLGIETF-VGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ-G-GT--LRFETPDGQSTIEA 130 (376)
T ss_pred HHHHHHHHHHCCCceE-ECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe-C-Cc--EEEEECCCceEEec
Confidence 4556667788886543 45566777633 235778889999999999999999999993 2 22 34565433 46999
Q ss_pred CEEEEccCCcC--CC-------hhhhhcCCcc
Q 014997 223 DTIVIGIGAKP--TV-------SPFERVGLNS 245 (414)
Q Consensus 223 D~vi~a~G~~p--~~-------~~l~~~gl~~ 245 (414)
|.||+|+|-.+ .+ .++++.|...
T Consensus 131 ~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i 162 (376)
T TIGR03862 131 DAVVLALGGASWSQLGSDGAWQQVLDQRGVSV 162 (376)
T ss_pred CEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence 99999999864 22 3566666543
No 388
>PLN03000 amine oxidase
Probab=94.02 E-value=0.062 Score=57.75 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 172 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~ 172 (414)
.++|+|||+|..|+.+|..|.+.|.+|++++..+++..+.
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCc
Confidence 4789999999999999999999999999999988775544
No 389
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=94.02 E-value=0.073 Score=53.07 Aligned_cols=35 Identities=20% Similarity=0.428 Sum_probs=32.1
Q ss_pred CeEEEECCChHHHHHHHHHHhCC--CcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g--~~Vtlv~~~~~~ 168 (414)
++++|||||.+|+-.|..|.+.+ ++++++++.+++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999999 899999998665
No 390
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=93.98 E-value=1.2 Score=42.35 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=28.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhC----CCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~----g~~Vtlv~~~ 165 (414)
..-.|+|||||.+|...|..|.++ |.+|.++++.
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 345799999999999999988654 6889999987
No 391
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.93 E-value=0.084 Score=54.15 Aligned_cols=54 Identities=20% Similarity=0.361 Sum_probs=37.5
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
-|||.||.+.+|++|++||+|+|+... ..|. ...-.+...+...|+.|++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999997421 1111 01112455677778888888764
No 392
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=93.93 E-value=0.078 Score=55.60 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHcC-CeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCC
Q 014997 55 WYKEKG-IEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTA 100 (414)
Q Consensus 55 ~~~~~~-i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~ 100 (414)
.+++.+ |+++.++.|+++..++..| .+.+|+ .+.++.||+|||...
T Consensus 141 ~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 141 AAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 344554 9999999999986443322 234554 689999999999754
No 393
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=93.92 E-value=0.081 Score=51.84 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.4
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
+++|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iG 37 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIG 37 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 58999999999999999999999999999876543
No 394
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.89 E-value=0.075 Score=54.94 Aligned_cols=54 Identities=22% Similarity=0.270 Sum_probs=36.0
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.|+|.||.+++|++|++||+|+|+... ..|. ...-.+...+...|+.+++++..
T Consensus 357 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGa~~l~~~sl~~~~v~G~~ag~~aa~ 411 (541)
T PRK07804 357 CGGVVTDVYGRTSVPGLYAAGEVACTG--VHGANRLASNSLLEGLVVGERAGAAAAA 411 (541)
T ss_pred CCCEEECCCCcccCCCeEEcccccccc--cCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999997421 1111 00011334566677777777753
No 395
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.87 E-value=0.15 Score=51.83 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=55.2
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++|+|+|.|-+|+-+|..|.+.|.+|++.++... .. .+.+++.||+++.+.... .
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~--------~~----~~~l~~~gi~~~~~~~~~-------~---- 70 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET--------AR----HKLIEVTGVADISTAEAS-------D---- 70 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH--------HH----HHHHHhcCcEEEeCCCch-------h----
Confidence 467899999999999999999999999988775321 11 123455688876542100 0
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
. .-++|+||.++|..|+.+.+.
T Consensus 71 -~-----~~~~d~vV~Spgi~~~~p~~~ 92 (473)
T PRK00141 71 -Q-----LDSFSLVVTSPGWRPDSPLLV 92 (473)
T ss_pred -H-----hcCCCEEEeCCCCCCCCHHHH
Confidence 0 124799999999998876653
No 396
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=93.86 E-value=0.088 Score=51.77 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 172 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~ 172 (414)
+..+|+|+|+|++||-.|..|.+.|.+|++++.++++..|+
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCcee
Confidence 56789999999999999999999999999999888775443
No 397
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=93.86 E-value=0.25 Score=47.31 Aligned_cols=58 Identities=22% Similarity=0.434 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 174 TPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 174 ~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
+..+...+.+.+++.|++++.++.|+.+... ++.+..|.+.+| .+.||.||+|+|...
T Consensus 136 p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 136 PRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred hHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 3467777888889999999999999999864 455666777777 799999999999654
No 398
>PLN02529 lysine-specific histone demethylase 1
Probab=93.80 E-value=0.091 Score=55.88 Aligned_cols=35 Identities=20% Similarity=0.451 Sum_probs=32.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 167 (414)
.++|+|||+|..|+.+|..|+++|.+|++++..++
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~ 194 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNR 194 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 46899999999999999999999999999998654
No 399
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.75 E-value=0.088 Score=48.92 Aligned_cols=34 Identities=26% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~ 165 (414)
...+|+|+|.|-+|.++|..|++.| .++++++..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5689999999999999999999999 678888765
No 400
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.68 E-value=0.21 Score=47.65 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=54.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEe
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKL 214 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~ 214 (414)
+|.|+|+|.+|+-+|..|.+.|.+|+++.|.++ .+.+++.|+.+..... ... ......
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~ 59 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA 59 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence 689999999999999999999988888877653 1346677888876544 100 001111
Q ss_pred CC-CcEEecCEEEEccCCcCCChh
Q 014997 215 ED-GSTIDADTIVIGIGAKPTVSP 237 (414)
Q Consensus 215 ~~-g~~i~~D~vi~a~G~~p~~~~ 237 (414)
.+ ...-++|.||+++-..-..+.
T Consensus 60 ~~~~~~~~~Dlviv~vKa~q~~~a 83 (307)
T COG1893 60 TDAEALGPADLVIVTVKAYQLEEA 83 (307)
T ss_pred cChhhcCCCCEEEEEeccccHHHH
Confidence 11 123479999999776544333
No 401
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.61 E-value=0.31 Score=46.23 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=28.2
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
+|.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999876
No 402
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=93.61 E-value=0.096 Score=53.21 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=32.0
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
+|+|||+|..|+-+|..|.+.|.+|+++++.+++-
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 48999999999999999999999999999987653
No 403
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=93.59 E-value=0.088 Score=53.57 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=28.9
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPE 165 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~ 165 (414)
.|+|||||.+|+-+|..|+++ |.+|+|+++.
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 589999999999999999997 8999999985
No 404
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.56 E-value=0.12 Score=53.46 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=37.3
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.|||.||.+.+|++|++||+|+|+... ..|. +..-.....|...|+.|++++..
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999997321 1111 01112445577778888887764
No 405
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.54 E-value=0.12 Score=53.90 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=35.3
Q ss_pred cCCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHhc
Q 014997 246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 246 ~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
..|+|.||.+++|++|++||+|+|+... ..|. +..-.....|...|+.|++++..
T Consensus 357 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 412 (582)
T PRK09231 357 TMGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAE 412 (582)
T ss_pred eCCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999997421 1111 00011234456666666666653
No 406
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.46 E-value=0.1 Score=53.30 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=31.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
.|+|||+|..|+-+|..|++.|.+|+++++++.+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 4899999999999999999999999999998654
No 407
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.43 E-value=0.14 Score=52.33 Aligned_cols=53 Identities=28% Similarity=0.389 Sum_probs=37.3
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.|||.||.+.||++||+||+|+|+. ..... . ..-.+...|...|+.|++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGan--r-l~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGAN--R-LASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCccc--c-cchhHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999973 22111 0 1112345577778888888764
No 408
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=93.34 E-value=0.52 Score=48.78 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
-.|+|||+|..|+-.|..++..|.+|.++++.
T Consensus 7 ~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~ 38 (562)
T COG1053 7 FDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA 38 (562)
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc
Confidence 47999999999999999999999999999876
No 409
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.21 E-value=0.24 Score=46.55 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCCeEEEECCCh-HHHHHHHHHHhCCCcEEEEee
Q 014997 132 KAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 132 ~~~~vvVvGgG~-~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
++++++|+|.|. .|.-+|..|.+.|..||++++
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 789999999997 999999999999999999876
No 410
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.20 E-value=0.33 Score=49.23 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=53.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.+++|+|+|.|.+|..+|..|.++|.+|++.+..+..- .+. ..+ +++ ++.+..+.. ..
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~----~~~----~~~-l~~-~~~~~~~~~-------~~----- 64 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVE----ARE----VGA-LAD-AALLVETEA-------SA----- 64 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCccc----chH----HHH-Hhh-cCEEEeCCC-------Ch-----
Confidence 47899999999999999999999999999987544210 111 112 444 333332210 00
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
...-.+|+||.++|..|+.+.++
T Consensus 65 -----~~~~~~d~vV~SpgI~~~~p~~~ 87 (468)
T PRK04690 65 -----QRLAAFDVVVKSPGISPYRPEAL 87 (468)
T ss_pred -----HHccCCCEEEECCCCCCCCHHHH
Confidence 00124799999999998876543
No 411
>PLN02487 zeta-carotene desaturase
Probab=93.19 E-value=0.13 Score=53.19 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=32.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 48999999999999999999999999999988765
No 412
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=93.15 E-value=0.4 Score=48.32 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc-----EEecCEEEEccCC
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 231 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~-----~i~~D~vi~a~G~ 231 (414)
..+.+.+.+.+++.|.+|++++.|++|...+++.+..+.+.+|+ ++.||.||++++.
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 34566777888889999999999999986556767677776665 7999999999865
No 413
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.14 E-value=0.1 Score=50.23 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=37.4
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA 100 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~ 100 (414)
..+.+++.|++++.+++|++|+.+... |.+++|+ +.+|++|+|+|...
T Consensus 153 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 153 LAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred hHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEecccccc
Confidence 345567789999999999999987654 7788887 99999999999864
No 414
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.01 E-value=0.15 Score=54.72 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
.++|+|||+|..|+.+|..|.+.|.+|+++++.+++
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 367999999999999999999999999999987554
No 415
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.98 E-value=0.15 Score=49.49 Aligned_cols=54 Identities=30% Similarity=0.513 Sum_probs=43.3
Q ss_pred HhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCCCh-hhhhcCC
Q 014997 186 QQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-PFERVGL 243 (414)
Q Consensus 186 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~-~l~~~gl 243 (414)
...||.+..+.+|..+... +. .|.+.||.+|.+|-.++|||.+|... .+++++-
T Consensus 268 ~nGGvAvl~G~kvvkid~~-d~---~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~ 322 (659)
T KOG1346|consen 268 VNGGVAVLRGRKVVKIDEE-DK---KVILNDGTTIGYDKCLIATGVRPKKLQVFEEASE 322 (659)
T ss_pred ccCceEEEeccceEEeecc-cC---eEEecCCcEeehhheeeecCcCcccchhhhhcCH
Confidence 5678999999999999743 22 67899999999999999999999643 4555543
No 416
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=92.93 E-value=0.43 Score=48.76 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
..+.+.+.+.+++.|++|+.++.|++|..+ ++++..|.+.+|+++.+|.||++.|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 356777888899999999999999999754 566778889999899999999998753
No 417
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=92.91 E-value=0.53 Score=47.28 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcCC
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 234 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (414)
.++.+.+.+.++..|.++++++.|++|..++++.+..|.+.+|+++.|+.||....+.|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 367777778888899999999999999876567777899999999999999999888876
No 418
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.89 E-value=0.14 Score=43.66 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.6
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
+|.|+|+|..|.-+|..|+..|.+|+++.|.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999998754
No 419
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.86 E-value=0.17 Score=52.38 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCC-CEEE------eCCCc--EEecCeEEEccCCCCC
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLI------TNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~-~~V~------~~~g~--~~~yd~LviAtG~~~~ 101 (414)
....+.+++.||+++.++.++++..++ ..|. +.+|+ .+.++.||+|||....
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCC
Confidence 334555667899999999999886543 3121 14564 5889999999998654
No 420
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.83 E-value=0.18 Score=51.06 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=35.8
Q ss_pred CCCHhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCCC
Q 014997 50 RQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 50 ~~~~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
....+.+++.|++++.+ .++.+..++.. |.+ +++.+.++.+|||||+...
T Consensus 124 ~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 124 KILYKHARELGVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcC
Confidence 34455667789999875 78877654432 333 5667999999999998764
No 421
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=92.83 E-value=0.7 Score=43.45 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=45.1
Q ss_pred HHHHHHhCCcEEEcCceEEEEEecCCCc---EEEEEeCCCcEEecCEEEEccCCcCCChhhhhcCCccc
Q 014997 181 YEQLYQQNGVKFVKGASIKNLEAGSDGR---VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 246 (414)
Q Consensus 181 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~---~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~ 246 (414)
+-+.++..|-+++++.+++.+..+.++. ...|.-..++++.+..++.|+|...+ ...+.+|++.+
T Consensus 202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 4445788888999999999887654431 22344445689999999999999875 34555565543
No 422
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=92.73 E-value=1.1 Score=42.42 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=29.3
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..|+|||+|..|+-.|..|+..|.+|.+++..
T Consensus 6 ~dvivvgaglaglvaa~elA~aG~~V~ildQE 37 (552)
T COG3573 6 ADVIVVGAGLAGLVAAAELADAGKRVLILDQE 37 (552)
T ss_pred ccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence 46899999999999999999999999998765
No 423
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.73 E-value=0.47 Score=39.24 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCc-EEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~-Vtlv~~~ 165 (414)
++++++|+|+|-+|-.++..|...|.+ |+++.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 689999999999999999999999977 8998875
No 424
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.71 E-value=0.35 Score=42.43 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=45.7
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc-------cccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCC
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------RLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDG 207 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-------~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~ 207 (414)
+|.|+|.|++|+-+|..|++.|.+|+.++..+.... ....+.+.+.+.+..+..++.+..+..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~---------- 71 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIE---------- 71 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHH----------
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhh----------
Confidence 689999999999999999999999999987643211 123456666666666555444432110
Q ss_pred cEEEEEeCCCcEEecCEEEEccCCc
Q 014997 208 RVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 208 ~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
...-.+|.+++|.+.-
T Consensus 72 ---------~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 72 ---------EAIKDADVVFICVPTP 87 (185)
T ss_dssp ---------HHHHH-SEEEE----E
T ss_pred ---------hhhhccceEEEecCCC
Confidence 0023589999987743
No 425
>PLN02568 polyamine oxidase
Probab=92.63 E-value=0.18 Score=52.01 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=32.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-----CcEEEEeeCCcc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHL 168 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g-----~~Vtlv~~~~~~ 168 (414)
+..+|+|||+|..|+-+|..|.+.| .+|+|+++++++
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~ 45 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI 45 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence 3468999999999999999999887 889999987655
No 426
>PLN02612 phytoene desaturase
Probab=92.53 E-value=0.19 Score=52.31 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=33.5
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++++|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 4578999999999999999999999999999987654
No 427
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.45 E-value=0.2 Score=47.28 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 170 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~ 170 (414)
++|.|||+|..|..+|..++..|.+|+++++.+..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~ 42 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELAT 42 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 5899999999999999999999999999998876554
No 428
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=92.41 E-value=0.3 Score=49.26 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=53.3
Q ss_pred eEEEECCChHHHH-HHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 135 KVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 135 ~vvVvGgG~~g~e-~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++.++|-|-+|+. +|..|.++|.+|++.+.... + ..+.|++.|+++..+.... .
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~-------------~ 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAE-------------N 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHH-------------H
Confidence 3679999999998 99999999999998875441 1 1234677798887542110 0
Q ss_pred eCCCcEEecCEEEEccCCcCCChhh
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
+ -.+|+||+++|..|+.+.+
T Consensus 56 ~-----~~~d~vV~spgi~~~~p~~ 75 (448)
T TIGR01082 56 L-----DDADVVVVSAAIKDDNPEI 75 (448)
T ss_pred C-----CCCCEEEECCCCCCCCHHH
Confidence 1 1389999999999876654
No 429
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=92.41 E-value=1.2 Score=43.04 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=32.1
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
....++|||+|+-|.-.|...+++|.+...++.+..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 4578999999999999999999999999988876433
No 430
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.39 E-value=0.17 Score=52.71 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=35.8
Q ss_pred cCCCEEEcCCCCCCCCcEEEEccccccCCccCCcc-cccccHHHHHHHHHHHHHHHhc
Q 014997 246 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT-ARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 246 ~~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~-~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
..|+|.+|.+++|++|++||+|+|+... ..|.. ..-.+...|...|+.|++++..
T Consensus 356 ~~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 356 TMGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred cCCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999997421 11110 0011344466667777766653
No 431
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.23 E-value=0.59 Score=47.80 Aligned_cols=57 Identities=28% Similarity=0.418 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCc
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~ 232 (414)
..+.+.+.+.+++.|++|++++.|++|..+ ++.+..|.+.+|+++.+|.||++.+..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcHH
Confidence 366777888889999999999999999854 456667888999899999999998763
No 432
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.20 E-value=0.33 Score=41.31 Aligned_cols=38 Identities=29% Similarity=0.348 Sum_probs=29.4
Q ss_pred hhcCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 129 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 129 ~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+-.+|+++|+|-|..|--+|..|+.+|.+|++.+..|
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 34579999999999999999999999999999998754
No 433
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=92.19 E-value=0.17 Score=51.58 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=0.0
Q ss_pred eEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL 168 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~ 168 (414)
.|+|||||.+|+-+|..|+++ +.+|+|+++.+.+
T Consensus 7 DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 7 DVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred eEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
No 434
>PRK07512 L-aspartate oxidase; Provisional
Probab=92.09 E-value=0.23 Score=50.99 Aligned_cols=53 Identities=30% Similarity=0.464 Sum_probs=35.6
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
.|||.||.+.+|++|++||+|+|+. .... +... -.+...+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGa--nrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGA--NRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcc--cchH-HHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999973 2111 1111 11334466677777777653
No 435
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.08 E-value=0.46 Score=47.60 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=52.9
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHH-hCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~-~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
++.|+|-|-+|+-+|..|.++|.+|+..+..+.... +. ....++ ..|+++..+.... .+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~----~~----~~~~~~~~~gi~~~~g~~~~-----------~~- 60 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL----EP----SMGQLRLNEGSVLHTGLHLE-----------DL- 60 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc----hh----HHHHHhhccCcEEEecCchH-----------Hh-
Confidence 478999999999999999999999999886543111 11 011223 3588887653210 01
Q ss_pred eCCCcEEecCEEEEccCCcCCChhh
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
-.+|+||+++|..++.+.+
T Consensus 61 ------~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 61 ------NNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred ------ccCCEEEECCCCCCCCHHH
Confidence 1379999999998876654
No 436
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=92.05 E-value=0.27 Score=41.81 Aligned_cols=37 Identities=19% Similarity=0.452 Sum_probs=29.7
Q ss_pred CeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCC
Q 014997 61 IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC 98 (414)
Q Consensus 61 i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~ 98 (414)
|+++ ..+|+.|++... .|.+.+|..+.||+||||||.
T Consensus 117 v~~~-~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 117 VRHV-RAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred EEEE-eeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 3344 368999987653 688899999999999999995
No 437
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=92.03 E-value=0.22 Score=48.56 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=31.8
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcE--EEEeeCCcc
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDT--TIIFPENHL 168 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~V--tlv~~~~~~ 168 (414)
..+.+|+|+|||.+|+-+|.+|++++.++ ++++..+|+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv 48 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV 48 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence 35789999999999999999999998665 557877665
No 438
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.93 E-value=0.81 Score=44.20 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=28.9
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEee
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 164 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~ 164 (414)
.+|.|||.|.+|.-+|..|++.|.+|+++.|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r 33 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGR 33 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEec
Confidence 3699999999999999999999999999876
No 439
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=91.81 E-value=0.29 Score=48.46 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=34.4
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccccc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQRL 172 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~~~ 172 (414)
...+|+|||+|.+|+-+|..|.+.| .++++++..+|+-.|.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 4568999999999999999999665 6789999888875543
No 440
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.72 E-value=0.25 Score=51.45 Aligned_cols=50 Identities=10% Similarity=0.123 Sum_probs=34.7
Q ss_pred CCHhHHHHcCCeEEcCCcEEEEeCCCCEEE---e---CCCc--EEecCeEEEccCCCC
Q 014997 51 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---T---NSGK--LLKYGSLIVATGCTA 100 (414)
Q Consensus 51 ~~~~~~~~~~i~~~~~~~V~~id~~~~~V~---~---~~g~--~~~yd~LviAtG~~~ 100 (414)
...+.+.+.+|+++.++.++++-.+...|. . .+|+ .+.++.||||||...
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 344455667999999999998765443222 1 2343 578899999999865
No 441
>PLN02676 polyamine oxidase
Probab=91.71 E-value=0.27 Score=50.13 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeCCccc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLL 169 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~~~~l 169 (414)
...+|+|||+|..|+-+|..|++.|. +|+++++++++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCC
Confidence 35689999999999999999999997 699999987653
No 442
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=91.52 E-value=0.37 Score=46.14 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=38.6
Q ss_pred HhHHHHcCCeEEcCCcEEEEeCCCCE---EEeCCCcEEecCeEEEccCCCCC
Q 014997 53 PEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 53 ~~~~~~~~i~~~~~~~V~~id~~~~~---V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
.+.+.+.|++++.+++|+.+..++.. |.+++| .+.+|.+|+|+|....
T Consensus 144 ~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 144 EKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred HHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 45567789999999999999876653 566666 6999999999998644
No 443
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=91.46 E-value=1.5 Score=43.27 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 230 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G 230 (414)
++..+.+-+++.|-+|.+...|++|.-+ +|+...|.+.||+++.+.+|+.-.+
T Consensus 266 vs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt 318 (561)
T KOG4254|consen 266 VSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNAT 318 (561)
T ss_pred HHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCc
Confidence 3344455558899999999999999865 4888999999999999977776544
No 444
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=91.31 E-value=0.24 Score=49.76 Aligned_cols=38 Identities=11% Similarity=-0.079 Sum_probs=34.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 171 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~ 171 (414)
-.|+|||+|..++-+|..|++.|++|.++++++....+
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE 42 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence 46999999999999999999999999999999876543
No 445
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=91.26 E-value=0.33 Score=50.85 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCc--cCCcccccccHHHHHHHHHHHHHHHh
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLK--MYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~--~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.|+|.+|.+.+|++|++||+|+|+..... ..+. .+...+...|+.|+.++.
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~----~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGA----NSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchh----HHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999752211 0111 133345555666665554
No 446
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.17 E-value=0.79 Score=39.49 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=30.4
Q ss_pred CCCeEEEECCChH-HHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYI-GMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~-g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.+++++|||+|.+ |..+|..|.++|.+|+++.|.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 6899999999985 888999999999999988864
No 447
>PLN02815 L-aspartate oxidase
Probab=91.13 E-value=0.35 Score=50.54 Aligned_cols=51 Identities=22% Similarity=0.301 Sum_probs=35.5
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccc--cCCc-cCCcccccccHHHHHHHHHHHHHHHh
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAA--FPLK-MYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~-~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
-|||.+|.+.+|++||+||+|+|+. .... ..+ -.+...+...|+.|++++.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~----gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA----SNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcch----hhHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999974 2211 111 1134456667777777665
No 448
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=91.12 E-value=0.34 Score=50.43 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=36.0
Q ss_pred HhHHHHcCCeEEcCCcEEEEeCCCCEEE------eCCCc--EEecCeEEEccCCCCC
Q 014997 53 PEWYKEKGIEMIYQDPVTSIDIEKQTLI------TNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 53 ~~~~~~~~i~~~~~~~V~~id~~~~~V~------~~~g~--~~~yd~LviAtG~~~~ 101 (414)
.+.+++.||+++.++.|+++..++..|. ..+|+ .+.++.||+|||....
T Consensus 136 ~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~ 192 (566)
T TIGR01812 136 YEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGR 192 (566)
T ss_pred HHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccC
Confidence 4456677999999999999875544332 24564 5889999999998643
No 449
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.12 E-value=0.47 Score=45.46 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 3789999999999999999999999999999876444
No 450
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.08 E-value=0.79 Score=36.43 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=35.7
Q ss_pred EEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcC
Q 014997 136 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKG 195 (414)
Q Consensus 136 vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~ 195 (414)
++|+|.|..|.+++..|.+.+.+|+++++.+. . .+.+++.|+.++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~g 47 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYG 47 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccc
Confidence 68999999999999999997778999987642 1 24456777776654
No 451
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.96 E-value=0.71 Score=46.55 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=54.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHh--CCcEEEcCceEEEEEecCCCcE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ--NGVKFVKGASIKNLEAGSDGRV 209 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~--~gv~i~~~~~v~~i~~~~~~~~ 209 (414)
....++|+|-|-+|+-+|..|.++|.+|+..+..+. . ... +.|++ .|++++.+.. +.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~-~~~----~~l~~~~~g~~~~~~~~--------~~-- 63 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------P-PGL----DTLAREFPDVELRCGGF--------DC-- 63 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------c-hhH----HHHHhhcCCcEEEeCCC--------Ch--
Confidence 456799999999999999999999999999886541 1 111 22444 3777765310 00
Q ss_pred EEEEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 210 AAVKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 210 ~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
...-.+|.||+++|..++.+.+.
T Consensus 64 -------~~~~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 64 -------ELLVQASEIIISPGLALDTPALR 86 (448)
T ss_pred -------HHhcCCCEEEECCCCCCCCHHHH
Confidence 00124799999999988766543
No 452
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=90.94 E-value=0.27 Score=46.35 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=29.8
Q ss_pred eEEEECCChHHHHHHHHHHhCC-CcEEEEeeCCcccc
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQ 170 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~l~ 170 (414)
.++|||+|..|+-+|..|++.+ .+|.|+++++....
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 4799999999999999999987 68999999986544
No 453
>PRK06847 hypothetical protein; Provisional
Probab=90.85 E-value=0.61 Score=45.56 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=38.4
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 100 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~ 100 (414)
+.+.+.|++++.+++|++++.+.. .|.+.+|+++.+|.||.|+|.++
T Consensus 115 ~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 115 DAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence 334567999999999999986554 56777898999999999999865
No 454
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.84 E-value=1.9 Score=41.23 Aligned_cols=98 Identities=26% Similarity=0.414 Sum_probs=63.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc--------------c------------------cc----ccC----
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------L------------------QR----LFT---- 174 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~--------------l------------------~~----~~~---- 174 (414)
..+|||||.-|+..|...+++|.++-+++..-++ | +. .|+
T Consensus 22 DylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~i 101 (478)
T KOG0405|consen 22 DYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKVI 101 (478)
T ss_pred ceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHHH
Confidence 4679999999999999999999999888765111 0 00 000
Q ss_pred -----H---HHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCc--EEecCEEEEccCCcCCChh
Q 014997 175 -----P---SLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP 237 (414)
Q Consensus 175 -----~---~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~--~i~~D~vi~a~G~~p~~~~ 237 (414)
. .+....++.|.+.+|+++.+. .++. +++.+ .|+..||+ .+.+..+++|+|-+|..+-
T Consensus 102 k~krdayi~RLngIY~~~L~k~~V~~i~G~--a~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~Pn 169 (478)
T KOG0405|consen 102 KQKRDAYILRLNGIYKRNLAKAAVKLIEGR--ARFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIPN 169 (478)
T ss_pred HhhhhHHHHHHHHHHHhhccccceeEEeee--EEEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCCC
Confidence 0 012223445566677777664 2332 23333 56777774 3789999999999987653
No 455
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.83 E-value=0.52 Score=51.30 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCeEEEECCChHHHHH-HHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 133 AKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~-A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
-+++.|+|-|-+|+.. |..|.++|.+|++.+..+. +. . +.|++.|++++.+... .
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~----~-~~L~~~gi~~~~g~~~--------~---- 59 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT----V-EKLKAKGARFFLGHQE--------E---- 59 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH----H-HHHHHCCCEEeCCCCH--------H----
Confidence 3579999999999998 9999999999998775431 11 2 2367789998765311 0
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
.+ -.+|+||+++|..++.+.+
T Consensus 60 -~~-----~~~d~vV~SpgI~~~~p~~ 80 (809)
T PRK14573 60 -HV-----PEDAVVVYSSSISKDNVEY 80 (809)
T ss_pred -Hc-----CCCCEEEECCCcCCCCHHH
Confidence 01 1379999999999887654
No 456
>PRK04148 hypothetical protein; Provisional
Probab=90.76 E-value=0.92 Score=37.36 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=30.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 167 (414)
+++++++||.| .|.++|..|++.|.+|+.++..+.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 45789999999 999999999999999999986653
No 457
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.71 E-value=0.62 Score=45.79 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEEeCCCcEEecCEEEEccCCcC
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 233 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p 233 (414)
..+...+.+.+++ |++++.++.|.+++.++ +. ..+.+.+|..+.||.||+|+|.-.
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~-~~-~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG-EG-WQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC-Ce-EEEEeCCCCEEEcCEEEEcCCccc
Confidence 4666777777778 99999999999998643 33 457788888799999999999754
No 458
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.70 E-value=0.48 Score=44.70 Aligned_cols=36 Identities=31% Similarity=0.379 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
++|.|||+|..|..+|..+++.|.+|+++++.+.-+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l 39 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEAL 39 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 679999999999999999999999999998876433
No 459
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.69 E-value=0.32 Score=50.88 Aligned_cols=52 Identities=21% Similarity=0.211 Sum_probs=33.8
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCccCCc-ccccccHHHHHHHHHHHHHHHh
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR-TARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~-~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
.|||.||.+.+|++|++||+|+|+... .|. +..-.+...|...|+.|++++.
T Consensus 355 ~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 355 MGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHH
Confidence 489999999999999999999997422 111 0111133445556666655554
No 460
>PRK06175 L-aspartate oxidase; Provisional
Probab=90.61 E-value=0.32 Score=48.85 Aligned_cols=54 Identities=22% Similarity=0.272 Sum_probs=37.5
Q ss_pred cCCCEEEcCCCCCCCCcEEEEccccc--cCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 014997 246 SVGGIQVDGQFRTRMPGIFAIGDVAA--FPLKMYDRTARVEHVDHARQSAQHCIKALLS 302 (414)
Q Consensus 246 ~~g~i~vd~~~~t~~~~IyA~GD~a~--~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~~ 302 (414)
..|||.||.+.||++|++||+|.|+. ..... . ..-.+...+...|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~n--r-l~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGAN--R-LASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCCCccc--c-chhHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999974 22111 1 1111344577778888888753
No 461
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=90.61 E-value=0.27 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=30.4
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
+.|-|||+|..|.|.|+.++++|+.|.+.+.++
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp 36 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRP 36 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccc
Confidence 568899999999999999999999999998764
No 462
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.54 E-value=0.32 Score=40.13 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.4
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 165 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~ 165 (414)
.++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4789999999999999999999997 58888754
No 463
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.53 E-value=0.43 Score=46.89 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=36.6
Q ss_pred HHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
+++ |++++.+++|++|+.++. .|++.+|..+.+|+||+|+|....
T Consensus 145 ~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 145 AGI-RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 345 899999999999986554 467778877999999999998644
No 464
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.51 E-value=0.29 Score=51.04 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=34.1
Q ss_pred HhHHHH-cCCeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997 53 PEWYKE-KGIEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 53 ~~~~~~-~~i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~~ 101 (414)
.+.+.+ .+|+++.++.|+++-.++..+ ...+|+ .+.++.||+|||....
T Consensus 144 ~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~ 201 (577)
T PRK06069 144 YSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGR 201 (577)
T ss_pred HHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhcc
Confidence 344444 589999999998885443332 234564 5789999999998653
No 465
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=90.42 E-value=0.48 Score=42.00 Aligned_cols=91 Identities=18% Similarity=0.158 Sum_probs=57.8
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
+++.|+|.|.+|.-+|..|++.|.+|++-.++. ++......+ ..+..+.- ..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~---~l~~~i~~------~~----------- 53 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAA---ALGPLITG------GS----------- 53 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHH---hhcccccc------CC-----------
Confidence 468899999999999999999999999875543 122222222 22322111 00
Q ss_pred eCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997 214 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG 254 (414)
Q Consensus 214 ~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~ 254 (414)
..+ -.-.+|.|++++.+....+.+++..-.. +|.|++|.
T Consensus 54 ~~d-A~~~aDVVvLAVP~~a~~~v~~~l~~~~-~~KIvID~ 92 (211)
T COG2085 54 NED-AAALADVVVLAVPFEAIPDVLAELRDAL-GGKIVIDA 92 (211)
T ss_pred hHH-HHhcCCEEEEeccHHHHHhHHHHHHHHh-CCeEEEec
Confidence 001 1234899999999987766666543212 26888886
No 466
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.40 E-value=0.37 Score=50.85 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=33.4
Q ss_pred HHHHcCCeEEcCCcEEEEeCCCCE---EEe---CCCc--EEecCeEEEccCCCC
Q 014997 55 WYKEKGIEMIYQDPVTSIDIEKQT---LIT---NSGK--LLKYGSLIVATGCTA 100 (414)
Q Consensus 55 ~~~~~~i~~~~~~~V~~id~~~~~---V~~---~~g~--~~~yd~LviAtG~~~ 100 (414)
.+++.||+++.++.|+++-.++.. |.. .+|+ .+.++.||||||...
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g 232 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYG 232 (640)
T ss_pred HHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcc
Confidence 456789999999999988654332 222 2453 589999999999854
No 467
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.14 E-value=0.61 Score=43.99 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=32.2
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
++|.|||+|..|..+|..|++.|.+|+++++.+..+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~ 37 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQL 37 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence 579999999999999999999999999998876543
No 468
>PRK07395 L-aspartate oxidase; Provisional
Probab=90.11 E-value=0.44 Score=49.41 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=34.7
Q ss_pred CCCEEEcCCCCCCCCcEEEEccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 014997 247 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 301 (414)
Q Consensus 247 ~g~i~vd~~~~t~~~~IyA~GD~a~~~~~~~~~~~~~~~~~~A~~~a~~aa~~i~ 301 (414)
-|||.||.+.+|++|++||+|+|+.....-.++.. -.+...+..-|+.++.++.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742110001111 1123345566777777664
No 469
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=90.03 E-value=0.39 Score=50.34 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=31.2
Q ss_pred HHHcCCeEEcCCcEEEEeCCC----CE--E---EeCCCc--EEecCeEEEccCCCCC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEK----QT--L---ITNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~----~~--V---~~~~g~--~~~yd~LviAtG~~~~ 101 (414)
+.+.+++++.++.|+++-.+. +. | ...+|+ .+.++.+|+|||....
T Consensus 136 l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 192 (614)
T TIGR02061 136 AKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN 192 (614)
T ss_pred HHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence 445568888888888876542 21 1 223554 5789999999998643
No 470
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=90.02 E-value=0.39 Score=50.82 Aligned_cols=50 Identities=10% Similarity=0.088 Sum_probs=35.4
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCE---EE---eCCCc--EEecCeEEEccCCCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQT---LI---TNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~---V~---~~~g~--~~~yd~LviAtG~~~~ 101 (414)
..+.+.+.||+++.++.|+++-.++.. +. +.+|+ .+.++.+|||||....
T Consensus 164 L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~ 221 (657)
T PRK08626 164 VDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR 221 (657)
T ss_pred HHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence 345567789999999999988654432 22 23564 4678999999997643
No 471
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.91 E-value=1.5 Score=44.59 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
+.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4799999999999999999999999988887654
No 472
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.74 E-value=0.63 Score=46.10 Aligned_cols=36 Identities=22% Similarity=0.180 Sum_probs=32.2
Q ss_pred cCCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 131 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 131 ~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
..+++|+|+|.|.+|.-+|..++.+|.+|+++++.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 368999999999999999999999999998877654
No 473
>PRK06834 hypothetical protein; Provisional
Probab=89.56 E-value=0.97 Score=46.12 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=38.7
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
+.+++.|++++.+++|+++..+.. .|++.+|+++.+|+||.|.|.+..
T Consensus 108 ~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 108 EWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCC
Confidence 345667999999999999987654 556677888999999999998753
No 474
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=89.55 E-value=0.64 Score=41.32 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=30.8
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCC-cEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtlv~~~ 165 (414)
..++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46889999999999999999999998 58988876
No 475
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.53 E-value=0.82 Score=42.87 Aligned_cols=95 Identities=21% Similarity=0.191 Sum_probs=57.7
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEE
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAV 212 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v 212 (414)
..+|+|+|.|.+|--+|..|++.|..+.++.+...-- .. +.-.+.|+.... .. +.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~----------~~-~~a~~lgv~d~~-------~~--~~----- 57 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAA----------TL-KAALELGVIDEL-------TV--AG----- 57 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHH----------HH-HHHhhcCccccc-------cc--ch-----
Confidence 4689999999999999999999999998887654210 11 111223432211 00 00
Q ss_pred EeCCCcEEecCEEEEccCCcCCChhhhhcCCcccCCCEEEcC
Q 014997 213 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG 254 (414)
Q Consensus 213 ~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~g~i~vd~ 254 (414)
.. ...-.+|+||+|++...-.+.+++..-....|.+++|-
T Consensus 58 ~~--~~~~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv~Dv 97 (279)
T COG0287 58 LA--EAAAEADLVIVAVPIEATEEVLKELAPHLKKGAIVTDV 97 (279)
T ss_pred hh--hhcccCCEEEEeccHHHHHHHHHHhcccCCCCCEEEec
Confidence 00 01234899999999887666676653233345566553
No 476
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=89.46 E-value=2.3 Score=38.33 Aligned_cols=85 Identities=15% Similarity=0.063 Sum_probs=49.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEE-EeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVA 210 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl-v~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~ 210 (414)
.+++++|.|-|..|..+|..|.++|.+++. .+....+... +-++.+.++...+..++..+.. ...+. +.
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~--Gld~~~l~~~~~~~~~~~~~~~--~~~~~---~~--- 91 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP--GITTEELINYAVALGGSARVKV--QDYFP---GE--- 91 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC--CCCHHHHHHHHHhhCCccccCc--ccccC---cc---
Confidence 679999999999999999999999876554 4444434332 3233333433333344433211 01111 11
Q ss_pred EEEeCCCcEEecCEEEEccCC
Q 014997 211 AVKLEDGSTIDADTIVIGIGA 231 (414)
Q Consensus 211 ~v~~~~g~~i~~D~vi~a~G~ 231 (414)
.+ ...+||.++.|...
T Consensus 92 ~l-----~~~~~DVlipaA~~ 107 (217)
T cd05211 92 AI-----LGLDVDIFAPCALG 107 (217)
T ss_pred cc-----eeccccEEeecccc
Confidence 11 13589999988654
No 477
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.43 E-value=1 Score=46.08 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.++++.|+|-|-+|+-+|..|.++|.+|+..+...
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 36789999999999999999999999999887543
No 478
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=89.29 E-value=0.5 Score=49.28 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 167 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~ 167 (414)
.-.|+|||+|..|+.+|..+++.|.+|.++++...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999999999998753
No 479
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=89.17 E-value=0.61 Score=49.15 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=29.2
Q ss_pred CeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCC
Q 014997 61 IEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTA 100 (414)
Q Consensus 61 i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~ 100 (414)
|+++.++.|+++-.++..| ...+|+ .+.++.+|+|||...
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 213 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG 213 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence 9999999999886433322 223554 589999999999843
No 480
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=89.09 E-value=0.7 Score=41.36 Aligned_cols=34 Identities=38% Similarity=0.580 Sum_probs=31.3
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
.+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 6789999999999999999999999999998654
No 481
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.97 E-value=0.56 Score=44.61 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=54.5
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK 213 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~ 213 (414)
.+|.|+|+|.-|.-+|..|++.|.+|++..|++... +.+... +.+.+++++...- +.. ..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~---------~~i~~~--~~N~~yLp~i~lp------~~l--~at 62 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIV---------AEINET--RENPKYLPGILLP------PNL--KAT 62 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHH---------HHHHhc--CcCccccCCccCC------ccc--ccc
Confidence 579999999999999999999999999988765332 222222 2344444432211 000 111
Q ss_pred eCCCcEEe-cCEEEEccCCcCCChhhhhc
Q 014997 214 LEDGSTID-ADTIVIGIGAKPTVSPFERV 241 (414)
Q Consensus 214 ~~~g~~i~-~D~vi~a~G~~p~~~~l~~~ 241 (414)
.+-.+.++ +|.|+++++.+.-.+.+++.
T Consensus 63 ~Dl~~a~~~ad~iv~avPs~~~r~v~~~l 91 (329)
T COG0240 63 TDLAEALDGADIIVIAVPSQALREVLRQL 91 (329)
T ss_pred cCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence 11112344 89999998877554555543
No 482
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=88.92 E-value=0.79 Score=39.88 Aligned_cols=35 Identities=23% Similarity=0.234 Sum_probs=31.6
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+++|.|+|-|.+|.++|..|..+|.+|..+.+..
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~ 69 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP 69 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence 57899999999999999999999999999998765
No 483
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.79 E-value=0.63 Score=42.19 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=30.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
++++|+|+|..|..+|..|.+.|.+|+++++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 468999999999999999999999999998765
No 484
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.76 E-value=1.2 Score=44.74 Aligned_cols=79 Identities=20% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEE
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAA 211 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~ 211 (414)
.++++.|+|-|-+|+-.+..|++.|.+|+..+.... .+. .+.+++ |+.+..+.... .
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~------~~~-----~~~l~~-g~~~~~~~~~~-------~---- 61 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRIT------PPG-----LDKLPE-NVERHTGSLND-------E---- 61 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCC------chh-----HHHHhc-CCEEEeCCCCH-------H----
Confidence 367899999999999999999999999999876541 111 122433 88776532110 0
Q ss_pred EEeCCCcEEecCEEEEccCCcCCChhhh
Q 014997 212 VKLEDGSTIDADTIVIGIGAKPTVSPFE 239 (414)
Q Consensus 212 v~~~~g~~i~~D~vi~a~G~~p~~~~l~ 239 (414)
..-++|++|+++|..++.+.+.
T Consensus 62 ------~~~~~d~vv~spgi~~~~~~~~ 83 (438)
T PRK03806 62 ------WLLAADLIVASPGIALAHPSLS 83 (438)
T ss_pred ------HhcCCCEEEECCCCCCCCHHHH
Confidence 0123689999999988766543
No 485
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=88.74 E-value=0.59 Score=46.64 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeC
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 165 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~ 165 (414)
..++|||+|..|+.+|..+++.|.+|+++++.
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 36899999999999999999999999999875
No 486
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.64 E-value=0.58 Score=44.62 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.6
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~ 37 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA 37 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence 47999999999999999999999999999887643
No 487
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.59 E-value=1.1 Score=43.52 Aligned_cols=50 Identities=18% Similarity=0.413 Sum_probs=37.5
Q ss_pred eEEEECCChHHHHHHHHHHhCCCcEEEEeeCCc--------ccccccCHHHHHHHHHHH
Q 014997 135 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LLQRLFTPSLAQRYEQLY 185 (414)
Q Consensus 135 ~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~--------~l~~~~~~~~~~~~~~~l 185 (414)
++.|+|.|+.|+-.|..|++.|++|+.++..+. ..| ++.|.+.+.+++..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~P-I~EpgLe~ll~~~~ 59 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISP-IYEPGLEELLKENL 59 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCC-CcCccHHHHHHhcc
Confidence 689999999999999999999999999876532 122 45566655555443
No 488
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=88.46 E-value=1 Score=43.79 Aligned_cols=44 Identities=25% Similarity=0.483 Sum_probs=35.4
Q ss_pred HHHHc-CCeEEcCCcEEEEeCCCCEEEeCCCcEEecCeEEEccCCCCC
Q 014997 55 WYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 55 ~~~~~-~i~~~~~~~V~~id~~~~~V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
.+.+. |++++.+++|++|+.. .|.+++|+ +.+|+||+|||....
T Consensus 154 ~~~~~~Gv~i~~~t~V~~i~~~--~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 154 YLAEQHGVEFHWNTAVTSVETG--TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHhcCCCEEEeCCeEEEEecC--eEEeCCCc-EEeCEEEECCCCChh
Confidence 34444 9999999999999754 78888775 789999999998643
No 489
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=88.36 E-value=7.4 Score=39.24 Aligned_cols=57 Identities=16% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCCcEEEcCceEEEEEecCC--C-cEEEEEe-CCCc--EE---ecCEEEEccCCcC
Q 014997 177 LAQRYEQLYQQNGVKFVKGASIKNLEAGSD--G-RVAAVKL-EDGS--TI---DADTIVIGIGAKP 233 (414)
Q Consensus 177 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~--~-~~~~v~~-~~g~--~i---~~D~vi~a~G~~p 233 (414)
+-.-+.+.|+++||+|.++++|+.+.-+.+ . .+..+.+ .+|. .+ +-|+|++..|..-
T Consensus 209 ii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 209 IILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccc
Confidence 334466778999999999999999864322 1 2333333 3442 22 4688888888643
No 490
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=88.33 E-value=2.2 Score=43.43 Aligned_cols=58 Identities=21% Similarity=0.305 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CC--cEEEEEeCCC---cEEecCEEEEccCCc
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 232 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~--~~~~v~~~~g---~~i~~D~vi~a~G~~ 232 (414)
.-+.+.+.+.++++|.+|++++.|++|..++ ++ .++.+.+.+| +++++|.||++++..
T Consensus 219 ~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 219 KYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 3345667788888999999999999997643 23 2566666544 569999999998853
No 491
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.31 E-value=1.4 Score=44.25 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=52.1
Q ss_pred CeEEEECCChHHHHHHHHHHhC--CCcEEEEeeCCcccccccCHHHHHHHHHHHHhCCcEEEcCc-eEEEEEecCCCcEE
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKGA-SIKNLEAGSDGRVA 210 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~l~~~~~~~~~~~~~~~l~~~gv~i~~~~-~v~~i~~~~~~~~~ 210 (414)
+++.|+|-|-+|+-.+..|.+. |.+|++.+..+. . ... +.|++ |+++..+. ...
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~------~-~~~----~~l~~-g~~~~~g~~~~~----------- 64 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRET------P-PGQ----EQLPE-DVELHSGGWNLE----------- 64 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCC------c-hhH----HHhhc-CCEEEeCCCChH-----------
Confidence 7899999999999999999887 578998876542 1 111 22444 88887542 110
Q ss_pred EEEeCCCcEEecCEEEEccCCcCCChhh
Q 014997 211 AVKLEDGSTIDADTIVIGIGAKPTVSPF 238 (414)
Q Consensus 211 ~v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (414)
.+ -.+|+||+++|..|+.+.+
T Consensus 65 ~~-------~~~d~vV~SpgI~~~~p~~ 85 (438)
T PRK04663 65 WL-------LEADLVVTNPGIALATPEI 85 (438)
T ss_pred Hh-------ccCCEEEECCCCCCCCHHH
Confidence 01 2379999999998876654
No 492
>PLN02487 zeta-carotene desaturase
Probab=88.27 E-value=2.1 Score=44.46 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHhCCcEEEcCceEEEEEecC--CC--cEEEEEe---CCCcEEecCEEEEccCCc
Q 014997 173 FTPSLAQRYEQLYQQNGVKFVKGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 232 (414)
Q Consensus 173 ~~~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~--~~--~~~~v~~---~~g~~i~~D~vi~a~G~~ 232 (414)
+...+.+.+.+.++++|.+|++++.|++|..+. ++ ++..+.+ .+++.+++|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 444577778899999999999999999998652 33 3667777 344579999999999864
No 493
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=88.24 E-value=2.3 Score=43.39 Aligned_cols=68 Identities=24% Similarity=0.417 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCcEEEcCceEEEEEecCCCcEEEEE---eCCC--cEEecCEEEEccCCcCCChhhhhcCCc
Q 014997 175 PSLAQRYEQLYQQNGVKFVKGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 244 (414)
Q Consensus 175 ~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~---~~~g--~~i~~D~vi~a~G~~p~~~~l~~~gl~ 244 (414)
..+...+.+.+++.|++++.+++|++++..+++.+ .+. +.+| .++.+|.||+|.|.... .+++.+|+.
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 46677777888889999999999999986544432 222 2334 36899999999998654 566666664
No 494
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=88.20 E-value=0.73 Score=43.45 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.0
Q ss_pred CCCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCC
Q 014997 132 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 166 (414)
Q Consensus 132 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~ 166 (414)
.+++++|+|.|.+|..+|..|+.+|.+|+++.|.+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999999999999999999999988754
No 495
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.07 E-value=1 Score=42.58 Aligned_cols=37 Identities=32% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCccc
Q 014997 133 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 169 (414)
Q Consensus 133 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l 169 (414)
-++|.|||+|.+|..+|..|+..|.+|+++++.+..+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~ 40 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAAL 40 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 3689999999999999999999999999998876433
No 496
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=88.03 E-value=1.3 Score=43.62 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCC
Q 014997 56 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 100 (414)
Q Consensus 56 ~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~ 100 (414)
+++.|++++.+++|+++..+.. +|++++|+++.+|.||.|+|.+.
T Consensus 123 ~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 123 LHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc
Confidence 4567999999999999876544 56677888899999999999875
No 497
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=87.93 E-value=0.4 Score=35.48 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=26.8
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG 84 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g 84 (414)
..+++++.||++++++.+.+++.+.. +|+++||
T Consensus 46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 46788999999999999999987764 3777665
No 498
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=87.80 E-value=0.7 Score=48.23 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=36.1
Q ss_pred CHhHHHHcCCeEEcCCcEEEEeCCCCEE------EeCCCc--EEecCeEEEccCCCCC
Q 014997 52 TPEWYKEKGIEMIYQDPVTSIDIEKQTL------ITNSGK--LLKYGSLIVATGCTAS 101 (414)
Q Consensus 52 ~~~~~~~~~i~~~~~~~V~~id~~~~~V------~~~~g~--~~~yd~LviAtG~~~~ 101 (414)
..+.+++.||+++.++.|+++-.+...| .+.+|+ .+.++.||+|||....
T Consensus 141 L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~ 198 (575)
T PRK05945 141 LVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR 198 (575)
T ss_pred HHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence 4455667899999999999875543322 234564 5899999999998653
No 499
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.65 E-value=0.73 Score=43.51 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=31.7
Q ss_pred CeEEEECCChHHHHHHHHHHhCCCcEEEEeeCCcc
Q 014997 134 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 168 (414)
Q Consensus 134 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~ 168 (414)
++|.|||+|..|..+|..|+..|.+|+++++.+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEI 38 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 68999999999999999999999999999877643
No 500
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=87.64 E-value=1.4 Score=43.54 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=38.5
Q ss_pred hHHHHcCCeEEcCCcEEEEeCCCC--EEEeCCCcEEecCeEEEccCCCCC
Q 014997 54 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 101 (414)
Q Consensus 54 ~~~~~~~i~~~~~~~V~~id~~~~--~V~~~~g~~~~yd~LviAtG~~~~ 101 (414)
+.+.+.|++++.+++|+.++.+.. .|++.+|+.+.+|.||.|+|.+..
T Consensus 119 ~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 119 KRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 334567999999999999976654 466778888999999999998643
Done!