BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014998
         (414 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
           Ectodomain
 pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
           Brassinolide
          Length = 772

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALL 162
           +C+G   +  S+N+L+   ++S   K+       L +  IS  + V W  S G      L
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 180

Query: 163 AWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG 222
           A   N ++  +  S  +   F+      +   N   G       P LG  +A+ H+ ++G
Sbjct: 181 AISGNKISGDVDVSRCVNLEFL-----DVSSNNFSTGI------PFLGDCSALQHLDISG 229


>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
 pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
          Length = 768

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%)

Query: 103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALL 162
           +C+G   +  S+N+L+   ++S   K+       L +  IS  + V W  S G      L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 163 AWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG 222
           A   N ++  +  S  +   F+      +   N   G       P LG  +A+ H+ ++G
Sbjct: 184 AISGNKISGDVDVSRCVNLEFL-----DVSSNNFSTGI------PFLGDCSALQHLDISG 232


>pdb|3FFE|A Chain A, Structure Of Achromobactin Synthetase Protein D, (Acsd)
 pdb|3FFE|B Chain B, Structure Of Achromobactin Synthetase Protein D, (Acsd)
          Length = 653

 Score = 28.5 bits (62), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 9/37 (24%)

Query: 254 RMISLADASGQRTALVALRNCL---YLVPLGYLAYDW 287
           RMIS      ++ AL  L NCL   + +P GYL Y+W
Sbjct: 44  RMIS------EKAALHGLLNCLIKEFAIPEGYLRYEW 74


>pdb|2W02|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Atp From Pectobacterium Chrysanthemi
 pdb|2W02|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Atp From Pectobacterium Chrysanthemi
 pdb|2W03|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Adenosine, Sulfate And Citrate From
           Pectobacterium Chrysanthemi
 pdb|2W03|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Adenosine, Sulfate And Citrate From
           Pectobacterium Chrysanthemi
 pdb|2W04|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Citrate In Atp Binding Site From
           Pectobacterium Chrysanthemi
 pdb|2W04|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Citrate In Atp Binding Site From
           Pectobacterium Chrysanthemi
 pdb|2X3K|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Amp And Sulfate From Pectobacterium
           Chrysanthemi
 pdb|2X3K|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
           ( Acsd) With Amp And Sulfate From Pectobacterium
           Chrysanthemi
 pdb|2X3J|A Chain A, Co-Complex Structure Of Achromobactin Synthetase Protein D
           (Acsd) With Atp And N-Citryl-Ethylenediamine From
           Pectobacterium Chrysanthemi
 pdb|2X3J|B Chain B, Co-Complex Structure Of Achromobactin Synthetase Protein D
           (Acsd) With Atp And N-Citryl-Ethylenediamine From
           Pectobacterium Chrysanthemi
          Length = 620

 Score = 28.5 bits (62), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 9/37 (24%)

Query: 254 RMISLADASGQRTALVALRNCL---YLVPLGYLAYDW 287
           RMIS      ++ AL  L NCL   + +P GYL Y+W
Sbjct: 11  RMIS------EKAALHGLLNCLIKEFAIPEGYLRYEW 41


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,880,163
Number of Sequences: 62578
Number of extensions: 333454
Number of successful extensions: 810
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 20
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)