BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014998
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64886|COX10_ARATH Protoheme IX farnesyltransferase, mitochondrial OS=Arabidopsis
thaliana GN=COX10 PE=2 SV=4
Length = 431
Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/356 (69%), Positives = 289/356 (81%), Gaps = 19/356 (5%)
Query: 59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSL 117
L HY RCYWELSKA+LSMLVVATSGTG+ LG+G + I GLC+TC GTMM+AASANSL
Sbjct: 90 LGHHYARCYWELSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAASANSL 149
Query: 118 NQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN 177
NQ+FEISND+KMKRTM RPLPSGRISV HAV WA+ G +G LLA K NML AGLA++N
Sbjct: 150 NQIFEISNDSKMKRTMLRPLPSGRISVPHAVAWATIAGASGACLLASKTNMLAAGLASAN 209
Query: 178 LILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHF 237
L+LYAFVYTPLKQ+HP+NTWVGA+VGAIPPLLGW AA G +S N MILPAALYFWQIPHF
Sbjct: 210 LVLYAFVYTPLKQLHPINTWVGAVVGAIPPLLGWAAASGQISYNSMILPAALYFWQIPHF 269
Query: 238 MALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297
MALA+LCRNDYAAGGY+M+SL D SG+R A VALRNC Y++PLG++AYDWG+TS WFCLE
Sbjct: 270 MALAHLCRNDYAAGGYKMLSLFDPSGKRIAAVALRNCFYMIPLGFIAYDWGLTSSWFCLE 329
Query: 298 SSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT-DNQQSLPEEDS 356
S+L+TLAI+A AFSFYRDRT KARKMFHASLL+LPVFMSGLL HR++ DNQQ L EE
Sbjct: 330 STLLTLAIAATAFSFYRDRTMHKARKMFHASLLFLPVFMSGLLLHRVSNDNQQQLVEE-- 387
Query: 357 EKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSY 412
+ + +V E + RKK+++ + PVAYAS APFPFLPAPS+
Sbjct: 388 ------AGLTNSVSGEVKTQRRKKRVA---------QPPVAYASAAPFPFLPAPSF 428
>sp|Q8CFY5|COX10_MOUSE Protoheme IX farnesyltransferase, mitochondrial OS=Mus musculus
GN=Cox10 PE=2 SV=1
Length = 443
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 154/260 (59%), Gaps = 3/260 (1%)
Query: 69 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
LSK +L+ LVV+T+ GFAL G D + T GT + + +ANS+NQ FE+ D+
Sbjct: 158 RLSKIKLTALVVSTTSAGFALAPGP-FDWSCFLLTSLGTGLASCAANSINQFFEVPFDSN 216
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
M RT RPL G+IS AV++A+ V G ALL W N LT L N+ LY YTPL
Sbjct: 217 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVALLTWGVNPLTGALGVFNIFLYTCCYTPL 276
Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
K++ NTWVGA+VGAIPP++GWTAA G + ++L LY WQ PHF AL++ R DY
Sbjct: 277 KRVSITNTWVGAVVGAIPPVMGWTAATGSLDAGALLLGGILYSWQFPHFNALSWGLREDY 336
Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
+ GGY M+S+ + R VALR+CL L+ L A +T+ F + S I L IS
Sbjct: 337 SRGGYCMMSVTHPALCRR--VALRHCLALIALSTAAPVLDITTWVFPVISLPINLYISYL 394
Query: 309 AFSFYRDRTTQKARKMFHAS 328
F FY D + +RK+F S
Sbjct: 395 GFRFYVDADRRSSRKLFFCS 414
>sp|Q12887|COX10_HUMAN Protoheme IX farnesyltransferase, mitochondrial OS=Homo sapiens
GN=COX10 PE=1 SV=3
Length = 443
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 149/260 (57%), Gaps = 3/260 (1%)
Query: 69 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
LSK +L+ LVV+T+ GFAL G D T GT + + +ANS+NQ FE+ D+
Sbjct: 159 RLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSN 217
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
M RT RPL G+IS AV++A+ V G A+L N LT L N+ LY YTPL
Sbjct: 218 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPL 277
Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
K+I NTWVGA+VGAIPP++GWTAA G + +L LY WQ PHF AL++ R DY
Sbjct: 278 KRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREDY 337
Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
+ GGY M+S+ R VALR+CL L+ L A +T+ F + + I IS
Sbjct: 338 SRGGYCMMSVTHPGLCRR--VALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYL 395
Query: 309 AFSFYRDRTTQKARKMFHAS 328
F FY D + +R++F S
Sbjct: 396 GFRFYVDADRRSSRRLFFCS 415
>sp|Q5R460|COX10_PONAB Protoheme IX farnesyltransferase, mitochondrial OS=Pongo abelii
GN=COX10 PE=2 SV=1
Length = 443
Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 111/260 (42%), Positives = 148/260 (56%), Gaps = 3/260 (1%)
Query: 69 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
LSK +L+ LVV+T+ GFAL G D T GT + + +ANS+NQ FE+ D+
Sbjct: 159 RLSKIKLTALVVSTTAAGFALAPGP-FDWPCFLLTSVGTGLASCAANSINQFFEVPFDSN 217
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
M RT RPL G+IS AV++A+ V G A+L N LT L N+ LY YTPL
Sbjct: 218 MNRTKNRPLVRGQISPLLAVSFATCCAVPGVAILTLGVNPLTGALGLFNIFLYTCCYTPL 277
Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
K+I NTWVGA+VGAIPP++GWTAA G + +L LY WQ PHF AL++ R Y
Sbjct: 278 KRISIANTWVGAVVGAIPPVMGWTAATGSLDAGAFLLGGILYSWQFPHFNALSWGLREGY 337
Query: 249 AAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAA 308
+ GGY M+S+ R VALR+CL L+ L A +T+ F + + I IS
Sbjct: 338 SRGGYCMMSVTHPGLCRR--VALRHCLALLVLSAAAPVLDITTWTFPIMALPINAYISYL 395
Query: 309 AFSFYRDRTTQKARKMFHAS 328
F FY D + +R++F S
Sbjct: 396 GFRFYVDADRRSSRRLFFCS 415
>sp|Q9Y7Y4|COX10_SCHPO Protoheme IX farnesyltransferase, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox10 PE=3 SV=1
Length = 387
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 17/302 (5%)
Query: 41 SSASASDSATGAAADPFSLIRHYGR-----------CYWELSKARLSMLVVATSGTGFAL 89
S+ S S AA DP L R + EL K RL++LVV ++ + +AL
Sbjct: 50 STLDTSTSTANAAPDPQVLTFLSKRMQAAPLYPKPSAFLELGKPRLTVLVVLSTMSSYAL 109
Query: 90 GSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149
+ L W GT + + SAN+ NQ E D +M RT RP+P G I +A
Sbjct: 110 APYPGLSFNTLAWLTMGTALCSISANAFNQSMEPMLDCQMARTRSRPIPRGAIRPEYAWL 169
Query: 150 WASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL 209
+A+ G+AGT+ +++ N L N++LY +YTPLK+I VNTWVG++VGAIPPL+
Sbjct: 170 FATLTGIAGTS-MSFLVNPTVGWLGLGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLM 228
Query: 210 GWTAAVGHVSLN---GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRT 266
GW A G L+ G+I A L+ WQ PHF A + + ++DY GY+M++ + +
Sbjct: 229 GWAACSGGDLLSHPGGLITAAMLFAWQFPHFNAFSTMVKDDYKKCGYQMMAWKNPA--LN 286
Query: 267 ALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFH 326
A V+LR L +PL Y G+ W+ + ++ + + A A+ FYR+R Q AR +F
Sbjct: 287 ARVSLRYALAFLPLSYAYISTGLVGPWYAVPATGTNMFLIARAWKFYRNRNYQNARSLFF 346
Query: 327 AS 328
AS
Sbjct: 347 AS 348
>sp|Q4WP81|COX10_ASPFU Protoheme IX farnesyltransferase, mitochondrial OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=cox10 PE=3 SV=1
Length = 512
Score = 175 bits (443), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 195/391 (49%), Gaps = 48/391 (12%)
Query: 14 SQSNRSQHSSTELGFLVNRKCHGVRSSSSAS--------ASDSATGAAADPFSLIRHYGR 65
S+S SQ +S EL ++ + ++A+ +S +T ++A P + +R
Sbjct: 100 SESITSQSTSQELPHRRRKRLKEEAAKNNAAETELPPDASSQLSTLSSALPATSLRRKLA 159
Query: 66 CYWELSKARLSMLVVATSGTGFAL---GSGSTIDLA------------GLCWTCTGTMMV 110
+ L+K RLS L+V T+ + + + S T+D + + TGT +
Sbjct: 160 AFLALTKPRLSFLIVLTTTSAYGMYPISSLLTLDPSMTPLPTLSTSTLTFLYLTTGTFLS 219
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
+ SAN+LN L E DA M RT RPL G +S R AV +A + AG LL N T
Sbjct: 220 SCSANTLNMLLEPKYDALMSRTRNRPLVRGLLSRRAAVLFAIATAAAGLGLLYIGTNPTT 279
Query: 171 AGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAA---------------- 214
L+ASN+ LYAFVYTPLK+I +NTWVGA+VG IPPL+GWTAA
Sbjct: 280 TALSASNICLYAFVYTPLKRISVINTWVGAVVGGIPPLMGWTAAAGQTATTGHDSWRDML 339
Query: 215 VGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC 274
S+ G +L L+ WQ PHF AL+Y+ R +Y A GYRM++ + + A VALR
Sbjct: 340 FSKDSIGGWLLGGILFAWQFPHFNALSYMIREEYKAAGYRMLAWTNPAAN--ARVALRYS 397
Query: 275 LYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ-KARKMFHASLLYLP 333
L + P + GV F + S+ + A+ F+R + AR++F AS+ LP
Sbjct: 398 LLMFPFSVGLWWVGVVGNGFLVGSTAANGWLVKEAYKFWRHQGANGSARRLFWASIWQLP 457
Query: 334 VFMSGLLFHR------LTDNQQSLPEEDSEK 358
+ + G L + + +N P ED +
Sbjct: 458 ILLVGGLVTKKGLWDGVWNNVFGQPVEDEDD 488
>sp|Q4I5G1|COX10_GIBZE Protoheme IX farnesyltransferase, mitochondrial OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=COX10 PE=3 SV=1
Length = 507
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 117/314 (37%), Positives = 159/314 (50%), Gaps = 32/314 (10%)
Query: 59 LIRHYGRCYWELSKARLSMLVVATSGTGFALG------SGSTIDLAGLC-----WTCTGT 107
L RH C L+K RL+MLVV T+ +AL S ST + L + GT
Sbjct: 151 LRRHLSACL-SLAKPRLTMLVVLTAMATYALYPVPEMLSPSTTETPSLSPLTLLFLTIGT 209
Query: 108 MMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKAN 167
+ASAN+LN L+E S DAKM RT RPL IS R AV +A G GT L + N
Sbjct: 210 TFCSASANALNMLYEPSTDAKMTRTRNRPLVRNLISKRAAVLFAILSGFVGTGALYFGVN 269
Query: 168 MLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV--------- 218
+GL +N+++YA +YTPLK + NTW+GA+VG IPPL+GW AA G
Sbjct: 270 PTVSGLGFANIVIYAGMYTPLKAVTAFNTWIGAVVGGIPPLMGWAAAAGETATKDGSWRE 329
Query: 219 --------SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVA 270
S+ G ++ L+ WQ PHFMAL++ R +Y G RM++ + + R VA
Sbjct: 330 LLFASDGSSIGGWVMAGLLFAWQFPHFMALSWPIREEYKKAGLRMLAWTNPA--RNGRVA 387
Query: 271 LRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYR-DRTTQKARKMFHASL 329
LR +PL GVT F + S I + + F+R + AR +F AS+
Sbjct: 388 LRYSFVFIPLCLSLCAAGVTEWSFAVTSFPINAWLIRESVRFWRYEGNKGSARGLFWASV 447
Query: 330 LYLPVFMSGLLFHR 343
+LP M L H+
Sbjct: 448 WHLPGVMILALLHK 461
>sp|Q5BCK8|COX10_EMENI Protoheme IX farnesyltransferase, mitochondrial OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=cox10 PE=3 SV=1
Length = 506
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 169/320 (52%), Gaps = 34/320 (10%)
Query: 56 PFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTI-----DLAGL---------- 100
P + +R ++ L+K RLS LV+ ++ + + + S+I +A L
Sbjct: 142 PKTSLRRKLAAFFALTKPRLSFLVLLSTTSAYGIYPVSSILALDPTIAPLPTLSTSTLTF 201
Query: 101 CWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTA 160
+ TGT + A SAN+LN +FE DA+M RT RPL G ++ R AV +A + G
Sbjct: 202 LYLTTGTFLSACSANTLNMIFEPKYDAQMSRTRNRPLVRGLVTRRAAVFFAIATAAVGLG 261
Query: 161 LLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAA------ 214
LL + N GL+A+N+ LYAFVYTPLK++H +NTW+GAIVG IPP++GW AA
Sbjct: 262 LLYFGTNPTVTGLSAANIALYAFVYTPLKRMHVINTWIGAIVGGIPPMMGWVAAAGQGAT 321
Query: 215 VGHVSLNGMIL----------PAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ 264
GH + M+ L+ WQ PHF AL++ R +Y GY+M+ + +
Sbjct: 322 TGHDTWRDMLFGENSLGGWLLGGILFAWQFPHFNALSHTIREEYKGAGYKMLCWTNPA-- 379
Query: 265 RTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ-KARK 323
R A VALR + + PL + G+ F + S++ ++ A+ F++ + AR
Sbjct: 380 RNARVALRYSVLMFPLSIGLWWAGIVGHGFLVSSTVANGWLTKEAYGFWKHQGANGTARG 439
Query: 324 MFHASLLYLPVFMSGLLFHR 343
+F AS+ LP+ + G L +
Sbjct: 440 LFWASIWQLPILLVGALVTK 459
>sp|Q11SZ7|COXX_CYTH3 Protoheme IX farnesyltransferase OS=Cytophaga hutchinsonii (strain
ATCC 33406 / NCIMB 9469) GN=ctaB PE=3 SV=2
Length = 286
Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 152/284 (53%), Gaps = 8/284 (2%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
+ Y++L+K RL+ V +SG G+ L +D L G + SAN +NQ+ E
Sbjct: 6 QAYFKLTKFRLTSTVAFSSGMGYILAERGQVDWLNLVLFLIGGFSITVSANIINQIIERE 65
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
+D MKRT RPLP G I+V+ A+ ++ +AGT +LA + + L+ +L++Y+F+
Sbjct: 66 SDKLMKRTASRPLPEGIITVQQAIITSALFLIAGTVILAVYSTLNALILSLISLVIYSFI 125
Query: 185 YTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLC 244
YTPLK + P+ ++GA GA PP++GW A G +L A + WQ PHF A+A++
Sbjct: 126 YTPLKTVSPIAVFIGAFPGAFPPMIGWIAVTGEYGWEPGVLFAIQFLWQFPHFWAIAWVL 185
Query: 245 RNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA 304
+Y G +++ D + TA + + L L+PLG+L Y +G++ + S+ I LA
Sbjct: 186 DEEYKKAGIKLLPTKDGRSKHTATIIMTYTLCLLPLGFLPYLFGMSG----ITSAYIALA 241
Query: 305 ISAAAF----SFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
F +++ + + A + S LYLP+ + ++
Sbjct: 242 CGILFFFQTMYLWKECSVKAALLLMFGSFLYLPIVQIAFVLDKI 285
>sp|Q6C0L2|COX10_YARLI Protoheme IX farnesyltransferase, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=COX10 PE=3 SV=1
Length = 471
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 162/313 (51%), Gaps = 18/313 (5%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y L+K RL++LVV ++ + +AL + + L L + GT + + SAN++N E + D
Sbjct: 162 YVALTKPRLTVLVVLSAMSSYAL-TPEAVSLTNLLFLTVGTALCSGSANAINMGREPAYD 220
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
+ M RT RP+ G ++ A T+A G GTA L + N A L ASN+ LY +YT
Sbjct: 221 SMMTRTRGRPVVRGAVTPNQAFTFAGITGTVGTAALYFGVNPTVAILGASNIALYGGLYT 280
Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGM-ILPAALYFWQIPHFMALAYLCR 245
LK+ H +NTWVGA+VGAIPPL+GW A+ G + G L LY WQ PHF AL+Y R
Sbjct: 281 TLKRKHIINTWVGAVVGAIPPLMGWAASGGSLLHPGAWCLAGLLYAWQFPHFNALSYSIR 340
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
++Y GY M + + A V LR L + PL + VT WF L+SS++ +
Sbjct: 341 DEYKKAGYVMTAWKNPG--LNARVGLRYALLMFPLCVGLSYYNVTDWWFVLDSSVLNAWM 398
Query: 306 SAAAFSFYRDRTTQK--------------ARKMFHASLLYLPVFMSGLLFHRLTDNQQSL 351
+ AF F++ ARK+F S+++LP + + H+
Sbjct: 399 AWWAFKFWQQENVNIALAAAGKQYSQNPFARKLFWGSVVHLPGVLLLAMIHKKGQWDWLF 458
Query: 352 PEEDSEKIVELSS 364
+ EK LSS
Sbjct: 459 GPSEDEKKKTLSS 471
>sp|Q6CTW6|COX10_KLULA Protoheme IX farnesyltransferase, mitochondrial OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=COX10 PE=3 SV=1
Length = 452
Score = 161 bits (408), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 169/345 (48%), Gaps = 27/345 (7%)
Query: 20 QHSSTELGFLVNRKCHGVRSSSSASASDSATGAAADPFSLIRHYGRCYWELSKARLSMLV 79
QH+ L F V G R S A SL + Y Y +LSK RL++LV
Sbjct: 98 QHNMENLPFKVKLVDKGQRKQIKES---KARVEPRPEVSLKKTYIEPYLQLSKPRLTVLV 154
Query: 80 VATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS 139
+ ++ +AL L L T GT + +ASAN++N E D +M RT RP+
Sbjct: 155 MLSAICSYALSPYPATVLQLLSLTV-GTTLCSASANAINMGREPDFDRQMIRTQARPVVR 213
Query: 140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVG 199
G +S A +A++ G GT++L N A L SN+ LYA++YT LK+ H +NTWVG
Sbjct: 214 GIVSPNQAFKFATAAGTLGTSILWLGVNPTVAFLGFSNIALYAWLYTSLKRKHIINTWVG 273
Query: 200 AIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLA 259
A+VGAIPPL+GW A+ L LY WQ PHF L++ RN+Y GY M +
Sbjct: 274 ALVGAIPPLMGWAASSPLSHPGAWCLAGLLYAWQFPHFNTLSHNIRNEYKNAGYVMTAWK 333
Query: 260 DASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFY--RDRT 317
+ + A VALR L + PL + + VT ++ L+S+ + +S AF FY + R
Sbjct: 334 NP--KLNARVALRYSLLMFPLCFGLSYFNVTDWYYQLDSAFVNAWMSLWAFKFYFQQKRN 391
Query: 318 TQK-------------------ARKMFHASLLYLPVFMSGLLFHR 343
K AR+ F S+L+LP + + H+
Sbjct: 392 YSKEIYNNKTEFNKGLAMANVYARRTFWVSVLHLPAVLILAILHK 436
>sp|Q6FUG4|COX10_CANGA Protoheme IX farnesyltransferase, mitochondrial OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=COX10 PE=3 SV=1
Length = 451
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 161/319 (50%), Gaps = 26/319 (8%)
Query: 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQ 119
I+ Y +L+K RL++LV+ ++ +AL LC T GT M + +AN++N
Sbjct: 133 IKKTMEAYVQLTKPRLTILVMLSAICSYALSPYPATVTELLCLT-VGTTMCSGAANAINM 191
Query: 120 LFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLI 179
E D +M RT RP+ G ++ + A ++A +G GT++L N A L SN+
Sbjct: 192 GREPDYDRQMIRTQARPVVRGAVTPKQAFSFAFGMGTLGTSILYLGVNPTVAALGLSNIA 251
Query: 180 LYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMA 239
LY+++YT LK+ H +NTWVGA+VGAIPPL+GW AA L LY WQ PHF
Sbjct: 252 LYSWIYTSLKRKHIINTWVGALVGAIPPLMGWAAASPLTHPGSWCLAGLLYAWQFPHFNT 311
Query: 240 LAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299
L++ RN+Y GY M + + A VALR L + PL + + +T ++ ++S
Sbjct: 312 LSHNIRNEYKNAGYVMTAWKNP--LLNARVALRYSLLMFPLCFGLSYFNITDWYYQIDSG 369
Query: 300 LITLAISAAAFSFY------------RDRTTQK---------ARKMFHASLLYLPVFMSG 338
L+ + +F FY DR ARK F AS+L+LP +
Sbjct: 370 LVNAWLCLWSFKFYMQQRLNYSSKIKNDRVKFNEGLATANVYARKAFFASVLHLPAVLIL 429
Query: 339 LLFHRLTDNQQSLPEEDSE 357
+ H+ N+ EDSE
Sbjct: 430 AILHK--KNRWDWLFEDSE 446
>sp|Q1IPI1|COXX_KORVE Protoheme IX farnesyltransferase OS=Koribacter versatilis (strain
Ellin345) GN=ctaB PE=3 SV=1
Length = 310
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 160/297 (53%), Gaps = 26/297 (8%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTC----TGTMMVAASANSLNQL 120
R Y EL+KAR++ L+V T+ TG G+ + L + WT G +V+ ++N++
Sbjct: 20 RDYSELTKARVTTLIVMTAWTGAFFGAAKS-GLPLVSWTLFHALLGIGLVSGGTAAMNEV 78
Query: 121 FEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL 180
E +DA+M+RT RPL +G +S+ H + + + + G L N LTA LA ++
Sbjct: 79 IERESDARMRRTAIRPLVTGSMSLGHGMVVSLVMMIGGAGYLGLMTNWLTAALALMTSVV 138
Query: 181 YAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMAL 240
Y YTPLK+IHP+ T +GA GA+PP+LGWTA GH+ + L A L+FWQ PHF ++
Sbjct: 139 YLMAYTPLKKIHPICTTIGAFPGAMPPVLGWTAIRGHLGWEAVALFAILFFWQFPHFHSI 198
Query: 241 AYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPL----------GYLAYDWGVT 290
A+L R+DYA G RM+ + + G+ TA + +L+P+ G + + +
Sbjct: 199 AWLYRDDYANAGIRMLPVVERDGRSTAREIVIYAAFLLPITLTPFLLRFAGRIYFLAALV 258
Query: 291 SG----WFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343
G W L + LA S+ + + AR++ AS+ YLP+ + ++ R
Sbjct: 259 LGSMLFWVSLRMFTMNLAPSS-------PHSKKYARQLLLASVTYLPLLFAVMMLDR 308
>sp|Q2S012|COXX_SALRD Protoheme IX farnesyltransferase OS=Salinibacter ruber (strain DSM
13855 / M31) GN=ctaB PE=3 SV=2
Length = 283
Score = 159 bits (401), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 149/275 (54%), Gaps = 2/275 (0%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y L+K +S +V ++ GF +GS + +D L WT GT + A +LN + E D
Sbjct: 5 YLILAKPEISSVVTLSAFAGFLIGSPTGLDGGTLLWTMLGTALCAGGVGTLNHVLERRYD 64
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A+MKRT +RPLP+GR + A + LL N+LTA LAA +LY FVYT
Sbjct: 65 AQMKRTAQRPLPAGRADPKMARRVGILLVCLAVGLLCPLVNVLTAVLAALTAVLYLFVYT 124
Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRN 246
PLK+ NT VG + GA+P L G+TAA GH+ G L WQ+PHF++LA++ R
Sbjct: 125 PLKRTTKWNTLVGTVPGALPALGGYTAATGHLGAGGWATFGILATWQMPHFLSLAWMYRK 184
Query: 247 DYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGW-FCLESSLITLAI 305
DYA G Y M+ + + G TA + LVP+ L +GW + + + L
Sbjct: 185 DYARGDYAMLPVVEPDGNSTAAQMIGFAALLVPVSVLPVL-TEAAGWIYGVGVVPLGLWF 243
Query: 306 SAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
F+ +RT QKA+++ AS+LY+P ++ LL
Sbjct: 244 LWTTIVFHGERTGQKAKRVLKASVLYIPGLVALLL 278
>sp|P0C150|COX10_MAGO7 Protoheme IX farnesyltransferase, mitochondrial OS=Magnaporthe
oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
GN=COX10 PE=3 SV=1
Length = 552
Score = 158 bits (400), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 165/320 (51%), Gaps = 30/320 (9%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFAL----------GSGSTIDLAGLC 101
AAA P +R LSK RL+MLVV ++ +AL S ++ L
Sbjct: 192 AAAQPAQSLRRRLTTLLALSKPRLTMLVVLSAMVPYALYPVPDFLTPGVSAPSLSPLTLL 251
Query: 102 WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL 161
+ TGT + +A+AN+LN ++E DA M RT RPL ++ R AV +A G
Sbjct: 252 FLTTGTTLCSAAANALNMIYEPKTDALMSRTRTRPLVRNLVTTRAAVCFALFCATTGILA 311
Query: 162 LAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGH---- 217
L + N A L A+N++LYA +YTPLK++ +NTWVGA+VG IPPL+GW AA G
Sbjct: 312 LQFGVNPTVAFLGAANIVLYAGIYTPLKRVSALNTWVGAVVGGIPPLMGWAAAAGESAVG 371
Query: 218 -------------VSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ 264
S G + A L+ WQ PHFMAL++ R++Y A G RM++ + +
Sbjct: 372 DGSWRELLLAPDGSSAGGWLFAALLFTWQFPHFMALSWGVRDEYRAAGLRMLAWTNPA-- 429
Query: 265 RTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDR-TTQKARK 323
R A VALR L VPL GVT F + S + L ++ + F++ + AR
Sbjct: 430 RNARVALRYGLVFVPLCVGLCAVGVTEWSFAVTSLPVNLWLARESIRFWQTQGAAGSARG 489
Query: 324 MFHASLLYLPVFMSGLLFHR 343
+F AS+ +LPV M L +
Sbjct: 490 LFWASVWHLPVVMVLALLQK 509
>sp|Q01YC2|COXX_SOLUE Protoheme IX farnesyltransferase OS=Solibacter usitatus (strain
Ellin6076) GN=ctaB PE=3 SV=1
Length = 292
Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 157/288 (54%), Gaps = 9/288 (3%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGS---------TIDLAGLCWTCTGTMMVAASAN 115
R Y EL+K R++ L++ ++G G+ G IDL L T GT ++A+
Sbjct: 2 RDYIELTKPRITWLILMSTGIGYFFGLPQASNWLTFLKNIDLLRLLHTIIGTGLIASGTA 61
Query: 116 SLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAA 175
+LNQ +E D KM RT RPLPSGR+ A+ + ++ +AG L N+L+AG+ A
Sbjct: 62 ALNQWYEREGDLKMHRTAGRPLPSGRLIAGRALAFGVALSIAGFVELWLGVNLLSAGIGA 121
Query: 176 SNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIP 235
L Y F+YTP+K+ +T VGAI GA+PP++G+ AA G ++ +L A L+ WQ P
Sbjct: 122 FTLASYLFLYTPMKRRTWWSTTVGAIPGAMPPVIGFAAAAGGLTRESWVLFAILFLWQFP 181
Query: 236 HFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFC 295
HF ++A++ + DYA G +M+ + D + TA + + L+P+ + G++ +
Sbjct: 182 HFYSIAWMYKEDYARAGIQMLPVVDPDCRSTARQIVIYGIALIPVSLVPALLGMSGRLYL 241
Query: 296 LESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343
+ + L+ L + +RT +AR + S+LYLP+ +L R
Sbjct: 242 VGALLLGLWFLYSGVRVALERTLVRARGVLITSVLYLPLIYGLMLLDR 289
>sp|Q7S5E7|COX10_NEUCR Protoheme IX farnesyltransferase, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=cox-10 PE=3 SV=1
Length = 535
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 132/244 (54%), Gaps = 20/244 (8%)
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
+ASAN+LN L+E D+KM RT RPL ++ + AV +A G+AGT L + N
Sbjct: 242 SASANALNMLYEPDTDSKMTRTRTRPLVRRLLTTKAAVLFAVGCGLAGTLALYFGVNPTV 301
Query: 171 AGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGH------------- 217
+ L A+N+ LYA YTPLK+I VNTWVGAIVG IPPL+GW AA G
Sbjct: 302 SFLGAANIALYAGAYTPLKRISAVNTWVGAIVGGIPPLMGWAAAAGESATGDGTWRELLF 361
Query: 218 ----VSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRN 273
SL G + L+ WQ PHFM L++ R++Y A G RM++ + + R VALR
Sbjct: 362 ASDGSSLGGWLFAGLLFAWQFPHFMPLSWGIRHEYKAAGLRMLAWTNPA--RNGRVALRY 419
Query: 274 CLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYR-DRTTQKARKMFHASLLYL 332
L +PL GVT F + S + + A F+R + AR +F AS+ +L
Sbjct: 420 SLAFIPLCVGLSATGVTEWSFAVTSLPVNAWLVWEAIKFWRLEGHKGSARGLFWASVWHL 479
Query: 333 PVFM 336
PV M
Sbjct: 480 PVIM 483
>sp|B1ZMT0|COXX_OPITP Protoheme IX farnesyltransferase OS=Opitutus terrae (strain DSM
11246 / PB90-1) GN=ctaB PE=3 SV=1
Length = 295
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 149/279 (53%), Gaps = 2/279 (0%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y EL+K RLSML V T+ G+ L + D L GT A +LNQ E D
Sbjct: 14 YLELTKPRLSMLSVMTALVGY-LAARPPWDPIQLALLVLGTSAAAGGVAALNQWLEHDTD 72
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A MKRT RP+P+G+++ A + + LL + L A + Y YT
Sbjct: 73 AHMKRTADRPIPAGKVATGSAFVLGVLMCIGSLFLLYALVHPLAALFTLLTIFSYLGWYT 132
Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRN 246
P K+ +T +GA+ GA PPL+GW+A G V+ G +L L+FWQ+PHFMA+A+ R
Sbjct: 133 PAKRWSRWSTEIGAVAGAFPPLIGWSAGEGRVTALGWVLFGVLFFWQVPHFMAVAWTYRK 192
Query: 247 DYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAIS 306
DY+A + M+ + D SG+R AL +L N L+ L WG+T+ ++ + +++ L
Sbjct: 193 DYSAVHFPMLPVRDESGERVALWSLINTAALLVTSLLPLLWGLTTWFYGVAAAVTGLWFL 252
Query: 307 AAAFSFYRDRTTQK-ARKMFHASLLYLPVFMSGLLFHRL 344
A F + T + ARK+F AS+ YLP+ + L+ RL
Sbjct: 253 WQAIKFMQPATRDRAARKLFFASIGYLPLVLGALVIDRL 291
>sp|A7H8V9|COXX_ANADF Protoheme IX farnesyltransferase OS=Anaeromyxobacter sp. (strain
Fw109-5) GN=ctaB PE=3 SV=1
Length = 296
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 111/291 (38%), Positives = 152/291 (52%), Gaps = 6/291 (2%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVA 111
A A P SL Y + L+K RLS LV+ TS G AL G A T T V
Sbjct: 8 ARARPSSL--QYAKDLLLLAKPRLSGLVIVTSAGGLALAPGHVAP-ARAALTVLATAAVV 64
Query: 112 ASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTA 171
+AN+LN E DA+M+RT RPLP+GR+ A+ V V +LA AN LTA
Sbjct: 65 GAANALNCWMEREIDARMRRTRDRPLPAGRVDPFTALGLGIMVPVFALPVLALVANPLTA 124
Query: 172 GLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYF 231
LA L+ Y VYTP+KQ + VGA+ GAIPPL+GWTAA G + G+ L A L+
Sbjct: 125 ALAFVALVTYVAVYTPMKQRSTLALLVGAVPGAIPPLMGWTAATGRLDAGGLALFALLFA 184
Query: 232 WQIPHFMALAYLCRNDYAAGGYRMISLADASGQR-TALVALRNCLYLVPLGYLAYDWGVT 290
WQ+PHF+A++ R+DYA GG R+ S+ G+R T LVP+ L V
Sbjct: 185 WQLPHFLAVSIYLRDDYARGGLRVFSIVH--GERTTRAWIAATAAALVPVSLLLVPLRVA 242
Query: 291 SGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLF 341
+ ++++ +A++ AF+ + AR F A++LYL + L
Sbjct: 243 GPSYGAVAAVLGVALAGYAFAGVGREGGRWARNFFLATILYLTLLFVALFL 293
>sp|P21592|COX10_YEAST Protoheme IX farnesyltransferase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COX10 PE=3
SV=1
Length = 462
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/351 (31%), Positives = 170/351 (48%), Gaps = 27/351 (7%)
Query: 14 SQSNRSQHSSTELGFLVNRKCHGVRSSSSASASDSATGAAADPFSLIRHYGRCYWELSKA 73
S S + +ST+L F V VR S S A + +L + Y +L+K
Sbjct: 99 SGSEATTDASTQLPFNVKLVDPMVRKSKRPS---HAISEGLNMKTLKKKVIMPYLQLTKP 155
Query: 74 RLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM 133
RL++LV+ ++ +AL LC T GT + + SAN++N E D +M RT
Sbjct: 156 RLTILVMLSAICSYALSPYPASVNELLCLT-VGTTLCSGSANAINMGREPEFDRQMVRTQ 214
Query: 134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHP 193
RP+ G ++ A +A+ +G G ++L + N A L ASN+ LY + YT +K+ H
Sbjct: 215 ARPVVRGDVTPTQAFEFAALIGTLGVSILYFGVNPTVAILGASNIALYGWAYTSMKRKHI 274
Query: 194 VNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGY 253
+NTW+GA+VG +PPL+GW AA L L+ WQ PHF L++ RN+Y GY
Sbjct: 275 INTWLGALVGMVPPLMGWAAASPLSHPGSWCLAGLLFAWQFPHFNTLSHNIRNEYKNAGY 334
Query: 254 RMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFY 313
M + + A V+LR + + PL + + +T ++ ++S LI ++ AF FY
Sbjct: 335 VMTAWKNP--LLNARVSLRYSILMFPLCFGLSYFNITDWYYQIDSGLINAWLTFWAFKFY 392
Query: 314 ------------RDRTTQK---------ARKMFHASLLYLPVFMSGLLFHR 343
+D ARK F AS+L+LP + + H+
Sbjct: 393 WQQRINYSAKTLKDNVKFNKGLSVANIYARKTFMASVLHLPAILILAIIHK 443
>sp|Q75F43|COX10_ASHGO Protoheme IX farnesyltransferase, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COX10 PE=3 SV=1
Length = 435
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 155/298 (52%), Gaps = 24/298 (8%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y +L+K RL++LV+ ++ +AL L L T GT + +A+AN +N E D
Sbjct: 125 YIQLAKPRLTVLVMLSAICSYALSPYPATVLELLSLT-VGTTLCSAAANGINMGREPDFD 183
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
+M RT RP+ G ++ A +++ GV GTA+L N A L ASN++LY++ YT
Sbjct: 184 RQMMRTQARPVVRGLVTPMQAYKFSAVSGVIGTAILYAGVNPTVALLGASNIVLYSWFYT 243
Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRN 246
LK+ H +NTW GAI GAIPPL+GW AA L LY WQ PHF L++ RN
Sbjct: 244 SLKRKHIINTWFGAITGAIPPLMGWAAASPLTHPGCWCLAGLLYAWQFPHFNTLSHNIRN 303
Query: 247 DYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAIS 306
+Y G+ M + + + A VALR L + PL + +G+T + ++S+L+ +S
Sbjct: 304 EYKNAGHVMTAWKNP--KLNARVALRYSLLMFPLCFGLSYYGITDWTYQIDSALVNGWMS 361
Query: 307 AAAFSFY---RDRTTQK------------------ARKMFHASLLYLPVFMSGLLFHR 343
AF F+ R ++K ARK F S+L+LP + + H+
Sbjct: 362 FWAFKFWWQQRYNYSKKVYNNKAEFNKGMVLANVYARKTFWVSVLHLPAVLILAIVHK 419
>sp|A0LXT1|COXX_GRAFK Protoheme IX farnesyltransferase OS=Gramella forsetii (strain
KT0803) GN=ctaB PE=3 SV=1
Length = 300
Score = 145 bits (365), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 97/277 (35%), Positives = 149/277 (53%), Gaps = 25/277 (9%)
Query: 69 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
E++K RL++ VV +S G+ LG+ TID + G ++ ++N+ NQ+ E + DA
Sbjct: 19 EITKMRLAISVVFSSVAGYFLGA-DTIDFVTVTLLAIGGYLMVGASNAYNQIIERNLDAL 77
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
M RT RPLP+GR+SV A T AS+ V G +L + N TA A ++ LY +YTPL
Sbjct: 78 MDRTKNRPLPAGRMSVPVAFTIASAFTVLGLVVL-YVINPKTAMFGAISIFLYVSIYTPL 136
Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDY 248
K P++ +VGA GAIP +LGW AA G S+ L +FWQ PHF A+ + +DY
Sbjct: 137 KTKTPLSVFVGAFPGAIPFMLGWVAASGSFSIEPGTLFMIQFFWQFPHFWAIGWWLFDDY 196
Query: 249 AAGGYRMISLADASGQRTALVALRNCLY--------LVPLGYLAYDWGVTSGWFCLESS- 299
GG+ M+ +G+R A++ LY L+P+ +GVT S
Sbjct: 197 KKGGFFMLP----TGKRDRGTAIQIILYTCWTILVSLIPV------FGVTGKLMLTPVSG 246
Query: 300 ----LITLAISAAAFSFYRDRTTQKARKMFHASLLYL 332
L+ L + A ++++T + A+K+ AS+ Y+
Sbjct: 247 IIIFLLGLGMLYYAIRLFKEKTAEAAKKLMFASVSYI 283
>sp|Q6BKW6|COX10_DEBHA Protoheme IX farnesyltransferase, mitochondrial OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=COX10 PE=3 SV=2
Length = 462
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 19/300 (6%)
Query: 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQ 119
+R + Y +L+K L++LV +S +A+ S T+ L L + GT + + +AN++N
Sbjct: 137 LRSIIQPYVKLTKPNLTILVTLSSICSYAI-SPYTVSLPELLFLTMGTALCSGAANAINM 195
Query: 120 LFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLI 179
E D KM RT+ RP+ G IS + A +A G G +L N + L N++
Sbjct: 196 GREPEFDKKMPRTVGRPVVRGLISPKQAYQFAGITGSLGCTMLFLGVNPTVSFLGFLNIV 255
Query: 180 LYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMA 239
LY+++YT LK+ +NTWVGAIVGAIPPL+GW A+ L LY WQ PHF A
Sbjct: 256 LYSWIYTSLKRKSIINTWVGAIVGAIPPLMGWAASSPLDHPGAWCLAGLLYAWQFPHFNA 315
Query: 240 LAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299
L++ + Y GY M A + + A VALR L + PL + +G+T F +S+
Sbjct: 316 LSHNIADQYKGAGYVMT--AAENPKLNARVALRYSLLMFPLCFGLSYFGITDWVFQFDSA 373
Query: 300 LITLAISAAAFSFY----RDRTTQK------------ARKMFHASLLYLPVFMSGLLFHR 343
+ ++ A+ F+ ++ T QK A+K+F S+ +LP + + H+
Sbjct: 374 IANSWLTYLAYKFWMQIKQNYTGQKPTANGIAMANIHAKKLFWGSVWHLPAVLILAMLHK 433
>sp|Q2IPE5|COXX_ANADE Protoheme IX farnesyltransferase OS=Anaeromyxobacter dehalogenans
(strain 2CP-C) GN=ctaB PE=3 SV=2
Length = 295
Score = 141 bits (355), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 144/282 (51%), Gaps = 18/282 (6%)
Query: 70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
LSK RLS LV+ T G L G I A T T +V +AN+LN E DA+M
Sbjct: 24 LSKPRLSGLVMITCAGGMWLAPGQ-IGAARAVLTVLATAVVVGAANALNCYLERDIDARM 82
Query: 130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
+RT RPLP+GR+ A+ + +L+ AN LTA LA L+ Y VYTP+K
Sbjct: 83 RRTRDRPLPAGRVDPFVALGLGIAAPAFAIPILSLAANGLTALLALVALLTYVLVYTPMK 142
Query: 190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
Q +VGA+ GAIPPL+GWT+ G V G+ L L+ WQ+PHF+A++ R DY
Sbjct: 143 QRSATALFVGAVPGAIPPLMGWTSVTGGVDAGGLALFGLLFAWQLPHFLAISLYLREDYQ 202
Query: 250 AGGYRMISLADASGQR--------TALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLI 301
GG RM A G+R T ++ L L LVPLG + +T ++++
Sbjct: 203 RGGLRM--FASVHGERATRLWMALTTILLLPASLALVPLGLAGTGYAIT-------AAVL 253
Query: 302 TLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343
LA+SA A S + AR F +L++L V L R
Sbjct: 254 GLALSAYAISGIGREGGRWARTFFLGTLVHLTVLFVALFLSR 295
>sp|Q54JB3|COX10_DICDI Probable protoheme IX farnesyltransferase, mitochondrial
OS=Dictyostelium discoideum GN=cox10 PE=3 SV=1
Length = 449
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 14/280 (5%)
Query: 67 YWELSKARLSMLVVATSGTGF-ALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISN 125
Y L K +++ V T+ G+ A D L GT + + SAN NQ E+ +
Sbjct: 149 YMTLIKLPITVYVTLTAIAGYVAACPIGAFDWVVLSQVSIGTFLASCSANIHNQEIEVQH 208
Query: 126 DAKMKRTMRRPLPSGRISVRHAVTWASSVGVA--GTALLAWKANMLTAG-LAASNLILYA 182
D KM RT RPL G I+ A W S+ + G +A ++ G LAA N+ILY
Sbjct: 209 DRKMPRTKDRPLVIGTINRGKA--WVGSIALLTLGFGTMAVTPSLFVPGTLAACNVILYC 266
Query: 183 FVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAY 242
+ YT LK++ P+NTW+GA VGAIPPL+G AA G GM+L +Y WQIPHF+AL+
Sbjct: 267 W-YTDLKRVTPLNTWIGAFVGAIPPLIGSVAATGEFEAIGMLLATFMYIWQIPHFLALSQ 325
Query: 243 LCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302
+ R Y GY+M+S+ + V+L + L+ +PL ++ +D+ + + +
Sbjct: 326 VLREQYRGAGYKMLSVTHEK-KTVDRVSLAHALFGIPLPFI-FDYFFNFNVHPITLTCMA 383
Query: 303 LAISAAAFSFYRDRTTQKARKMFHASLLYLPV--FMSGLL 340
L+ ++ A F T ++++ SL+ LP+ F+S LL
Sbjct: 384 LSSASLALPFI---TKISPKRLYIISLISLPITLFLSCLL 420
>sp|Q1D1K4|COXX_MYXXD Protoheme IX farnesyltransferase OS=Myxococcus xanthus (strain DK
1622) GN=ctaB PE=3 SV=1
Length = 294
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 133/276 (48%), Gaps = 3/276 (1%)
Query: 70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
L+K RLS LV+ T+ G L G + L T T +AN+LN +E +D M
Sbjct: 18 LTKPRLSSLVLVTAAGGMWLAPGHMGAVNALV-TLLATAGTVGAANALNCYWERHSDQFM 76
Query: 130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
RT RPLPSGR+ A+ + S+ LA AN+LTA L L+ Y YTPLK
Sbjct: 77 DRTRNRPLPSGRMEPAVALWFGISLAAVSLPALALGANVLTAALGLVALLSYVLAYTPLK 136
Query: 190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
VG + GA+PPL+GWTA + + G L A ++ WQ+PHF+A+A + +Y
Sbjct: 137 ARTSAAMLVGGVPGALPPLMGWTAVTNQMDVGGFSLFAIMFLWQMPHFIAIALFRKEEYR 196
Query: 250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLES-SLITLAISAA 308
A G + L A V L + L+P+ L + + W+ + L +
Sbjct: 197 AAGLTSVPLERGDESSRAQVVL-YLVALIPMTLLPFQLHIAGAWYLAAAVLLGLSFLGLG 255
Query: 309 AFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
A+ F+R AR+ F SL+YL + L R+
Sbjct: 256 AWGFFRRLGNTWARQTFFFSLIYLTGLFAALALDRV 291
>sp|Q7UJF4|COXX_RHOBA Protoheme IX farnesyltransferase OS=Rhodopirellula baltica (strain
SH1) GN=ctaB PE=3 SV=2
Length = 287
Score = 131 bits (330), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 89/269 (33%), Positives = 141/269 (52%), Gaps = 10/269 (3%)
Query: 69 ELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAK 128
EL+K R+ +++ T+ + +T+ L W GT ++A SA + NQ++E D
Sbjct: 3 ELTKPRIVTMILVTTVASALIAGSATLTLIDWFWLMIGTALIAGSAGAANQVWECRIDRN 62
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
M RT RP+P GR+S AV +S G+AG+ +L ++ A + + ++Y VYTP+
Sbjct: 63 MPRTANRPVPGGRMSYAVAVALTASSGIAGSIILWLGNGLVPACVGIATWLIYVLVYTPM 122
Query: 189 KQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS-LNGMILPAALYFWQIPHFMALAYLCRND 247
K NT VGAI GA+P +G+TAA G ++ L G +L L WQ PHFMA+A+L R
Sbjct: 123 KTRTAWNTTVGAIAGALPVFIGYTAAGGTLTELPGWMLFGVLACWQYPHFMAIAWLYRTQ 182
Query: 248 YAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLI-TLAIS 306
YA G+ M + + +G+ A ++ + L G + W W +S++ T+ I
Sbjct: 183 YAEAGFCMTTTVEPTGRHAAWQSILGSVALATCG-VVLAWFPDGQWVASAASVLATVLIL 241
Query: 307 AAAFSFYR-------DRTTQKARKMFHAS 328
AA++ R + + ARKM S
Sbjct: 242 AASWPLLRASLNFRANPNDKTARKMLRWS 270
>sp|Q2SQU8|CYOE_HAHCH Protoheme IX farnesyltransferase OS=Hahella chejuensis (strain KCTC
2396) GN=cyoE PE=3 SV=1
Length = 299
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 146/278 (52%), Gaps = 4/278 (1%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y+EL K R+ L++ T+ G L S + L G ++A+SA ++N + +
Sbjct: 14 RDYYELCKPRVVALMMLTAVVGMLLASDQGMPWNALILGNLGIALLASSAAAINHIVDQK 73
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
DA M RT +RP+ GR+ HA+T+A S+ V G A+LAW N LTA L ++LI YA V
Sbjct: 74 IDAVMARTQKRPIVQGRVDNVHALTFAFSLAVVGMAILAWGVNPLTAWLTLASLIGYAVV 133
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N +G + GA PPLLGWT+ G V + ++L ++ W PHF ALA
Sbjct: 134 YTLFLKRATPQNIVLGGLAGAAPPLLGWTSVTGTVDPHALLLVLIIFAWTPPHFWALAVH 193
Query: 244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL-IT 302
+++YA G M+ + + T L L L L L + G+ GW ++L +
Sbjct: 194 RKDEYAKAGVPMLPVTHGD-RYTKLHILLYTLMLFAASMLPFITGM-CGWIYFVAALALG 251
Query: 303 LAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
+ A++ +RD A K F S+ YL + LL
Sbjct: 252 VRFLDWAWAMWRDSRKHAAIKTFRYSITYLMLLFVALL 289
>sp|B1Y6Q4|COXX_LEPCP Protoheme IX farnesyltransferase OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=ctaB PE=3 SV=1
Length = 305
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 144/292 (49%), Gaps = 7/292 (2%)
Query: 65 RCYWELSKARLSMLVVATSGTGFAL---GSGSTIDLAGLCWTCTGTMMVAASANSLNQLF 121
R Y L+K R+ L+V + G L G+ DL W G +VA++A + N L
Sbjct: 16 RQYVALTKPRVVQLIVFCAAIGMLLAVPGAPGLADLGKALWATLGIWLVASAAAAFNCLI 75
Query: 122 EISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILY 181
E D++MKRT RP G +S A+ +++ + AG A+L N LTA L + Y
Sbjct: 76 EQQIDSRMKRTAWRPTARGELSRTQALIFSAVLCSAGMAVLHEAVNPLTAWLTLGTFVGY 135
Query: 182 AFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMAL 240
A +YT LK + P N +G I GA+PPLLGW A G V G+IL ++ W PHF AL
Sbjct: 136 AVIYTVVLKPLTPQNIVIGGISGAMPPLLGWAAMTGEVGPEGLILCLIIFLWTPPHFWAL 195
Query: 241 AYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300
A DYA G M+ + + + T L L L+ L + G+ SGW L ++
Sbjct: 196 ALYRAEDYARAGLPMLPVTHGN-EFTRLQILLYTFVLLAGTLLPFVQGM-SGWLYLAAAF 253
Query: 301 IT-LAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSL 351
+ L A+ +R+ + AR+ F S+ +L + + LL T + +L
Sbjct: 254 VLGLRFIHYAWRLWRNYSEALARQTFRFSIWHLSLLFAALLVDHYTQDLLTL 305
>sp|Q5N1X0|COXX_SYNP6 Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=ctaB PE=3 SV=1
Length = 318
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 1/185 (0%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
YW+L+K R+ +L++ T+ G L + +D T G + AA+AN+LN L++ D
Sbjct: 23 YWQLTKPRIILLLLITTAAGMGLAAQGPLDPRLAIATLIGGGLAAAAANTLNCLYDRDID 82
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A M+RT RPLPSGRI A +A S+ LL W+AN L AGLA + ++ Y +YT
Sbjct: 83 AIMERTRWRPLPSGRIQPFEAWAFALSLAALSFILLDWQANQLAAGLALAGIVFYVVIYT 142
Query: 187 -PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK+ N +G GAIPPL+GW A G ++ IL A + W PHF ALA + R
Sbjct: 143 HGLKRHSSQNIVIGGAAGAIPPLVGWAAVTGELAWPAWILFAIVCLWTPPHFWALALMIR 202
Query: 246 NDYAA 250
+DYAA
Sbjct: 203 DDYAA 207
>sp|Q31JY9|COXX_SYNE7 Protoheme IX farnesyltransferase OS=Synechococcus elongatus (strain
PCC 7942) GN=ctaB PE=3 SV=2
Length = 318
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 107/185 (57%), Gaps = 1/185 (0%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
YW+L+K R+ +L++ T+ G L + +D T G + AA+AN+LN L++ D
Sbjct: 23 YWQLTKPRIILLLLITTAAGMGLAAQGPLDPRLAIATLIGGGLAAAAANTLNCLYDRDID 82
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A M+RT RPLPSGRI A +A S+ LL W+AN L AGLA + ++ Y +YT
Sbjct: 83 AIMERTRWRPLPSGRIQPFEAWAFALSLAALSFILLDWQANQLAAGLALAGIVFYVVIYT 142
Query: 187 -PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK+ N +G GAIPPL+GW A G ++ IL A + W PHF ALA + R
Sbjct: 143 HGLKRHSSQNIVIGGAAGAIPPLVGWAAVTGELAWPAWILFAIVCLWTPPHFWALALMIR 202
Query: 246 NDYAA 250
+DYAA
Sbjct: 203 DDYAA 207
>sp|B1XKB3|COXX_SYNP2 Protoheme IX farnesyltransferase OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=ctaB PE=3 SV=1
Length = 317
Score = 128 bits (321), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 92/283 (32%), Positives = 146/283 (51%), Gaps = 4/283 (1%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
+ Y++L+K R+ L++ T+ + S ID L T G + AASA +LN +++
Sbjct: 18 KSYYQLTKPRIIPLLLITTAASMWIASHGHIDPVKLLITLLGGTLAAASAQTLNCIYDQD 77
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D M+RT +RP+PSGR+ RHA+ +A +G +LL N+L+A LA S ++ Y V
Sbjct: 78 IDFSMQRTRKRPIPSGRVQPRHALIFALILGSLSFSLLMVFVNLLSACLALSGIVFYMLV 137
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ H N +G G+IPPL+GW A G + + IL A ++ W PHF ALA +
Sbjct: 138 YTHWLKRHHVQNIVIGGAAGSIPPLVGWAAVTGQLDWSAWILFALIFLWTPPHFWALALM 197
Query: 244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITL 303
+ DYA M+ + + + L +VP L SG F ++L+
Sbjct: 198 IKEDYAEVEVPMLPVVKGEKITVDQIWIYT-LIVVPFSLLLVFPFQASGLFYAIAALVLG 256
Query: 304 AI-SAAAFSFYRDRTTQK-ARKMFHASLLYLPVFMSGLLFHRL 344
AI A+ ++ Q A+ MF S+LY+ + + ++ L
Sbjct: 257 AIFIQKAWELKQNPFDQSLAKSMFKYSILYMMLLCTAMVVDSL 299
>sp|B7K336|COXX_CYAP8 Protoheme IX farnesyltransferase OS=Cyanothece sp. (strain PCC
8801) GN=ctaB PE=3 SV=1
Length = 323
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 144/290 (49%), Gaps = 4/290 (1%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
+ Y++L+K R+ L++ T+ + S +DL L T G + AA+A +N +++
Sbjct: 18 KSYYQLTKPRIIPLLLITTAAAMWIASEGRVDLFTLFITLIGGTLAAAAAQVMNCIYDRD 77
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D +M RT RP+PSGR+ RHA +A + + +L A N+L+ LA S ++ Y V
Sbjct: 78 IDYEMLRTRARPIPSGRVQSRHAFIFAVILAILSFSLFALFVNLLSGLLAMSGIVFYMLV 137
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N +G G+IPPL+GW A G + IL A ++ W PHF ALA +
Sbjct: 138 YTHLLKRNSPQNIVIGGAAGSIPPLVGWAAVTGDLGWAPWILFAIIFLWTPPHFWALALM 197
Query: 244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGY-LAYDWGVTSGWFCLESSLIT 302
++DYA M+ + + + T L ++P + L Y GV+ + + ++
Sbjct: 198 IKDDYAQVNVPMMPVVEGE-ESTVRQIWWYTLLMIPCTFLLVYPLGVSGAVYGGIAIILG 256
Query: 303 LAISAAAFSFYRDRTTQK-ARKMFHASLLYLPVFMSGLLFHRLTDNQQSL 351
A+ + Q AR +F S+ YL + + ++ L Q +
Sbjct: 257 AMFIQKAWQLKQAPFDQVLARSLFKFSIFYLMLLCTAMVIDSLPLTHQVM 306
>sp|P67054|COXX_BRUSU Protoheme IX farnesyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=ctaB PE=3 SV=2
Length = 312
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 6 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 63
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 64 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 123
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 124 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 183
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 184 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 241
Query: 289 VTSGWFCLESSLITLAISAAAFSFY----RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + + + ARK+F SLLYL + LLF L
Sbjct: 242 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQPQMLAAARKLFRFSLLYLAGIFAVLLFEAL 301
Query: 345 T 345
T
Sbjct: 302 T 302
>sp|A5VP40|COXX_BRUO2 Protoheme IX farnesyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=ctaB PE=3 SV=1
Length = 312
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 6 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 63
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 64 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 123
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 124 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 183
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 184 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 241
Query: 289 VTSGWFCLESSLITLAISAAAFSFY----RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + + + ARK+F SLLYL + LLF L
Sbjct: 242 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQPQMLAAARKLFRFSLLYLAGIFAVLLFEAL 301
Query: 345 T 345
T
Sbjct: 302 T 302
>sp|P67053|COXX_BRUME Protoheme IX farnesyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=ctaB PE=3 SV=2
Length = 312
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 6 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 63
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 64 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 123
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 124 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 183
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 184 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 241
Query: 289 VTSGWFCLESSLITLAISAAAFSFY----RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + + + ARK+F SLLYL + LLF L
Sbjct: 242 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQPQMLAAARKLFRFSLLYLAGIFAVLLFEAL 301
Query: 345 T 345
T
Sbjct: 302 T 302
>sp|C0RHH6|COXX_BRUMB Protoheme IX farnesyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=ctaB PE=3 SV=1
Length = 315
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 9 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 66
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 67 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 126
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 127 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 186
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 187 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 244
Query: 289 VTSGWFCLESSLITLAISAAAFSFY----RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + + + ARK+F SLLYL + LLF L
Sbjct: 245 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQPQMLAAARKLFRFSLLYLAGIFAVLLFEAL 304
Query: 345 T 345
T
Sbjct: 305 T 305
>sp|A9M8Z3|COXX_BRUC2 Protoheme IX farnesyltransferase OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=ctaB PE=3 SV=1
Length = 315
Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 9 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 66
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 67 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 126
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 127 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 186
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 187 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 244
Query: 289 VTSGWFCLESSLITLAISAAAFSFY----RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + + + ARK+F SLLYL + LLF L
Sbjct: 245 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQPQMLAAARKLFRFSLLYLAGIFAVLLFEAL 304
Query: 345 T 345
T
Sbjct: 305 T 305
>sp|B0CKF4|COXX_BRUSI Protoheme IX farnesyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=ctaB PE=3 SV=1
Length = 315
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 146/301 (48%), Gaps = 11/301 (3%)
Query: 52 AAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMV 110
A+ D F+L R Y L K R+ LVV T G L G LA + C
Sbjct: 9 ASEDAFALSEATARDYLVLLKPRVMSLVVFTGLVGLVLAPGHMNPVLAVISILCIAVG-- 66
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLT 170
A ++ +LN ++ DA MKRT +RP+P+G I+ + + ++ L N L
Sbjct: 67 AGASGALNMWYDADIDAVMKRTRKRPIPAGIIAPNQVLAFGLTLSAFSVMTLGLMVNWLA 126
Query: 171 AGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229
A L A + YA +YT LK+ P N +G GA PP++GW AA G ++ + ++L +
Sbjct: 127 AALLAFTIFFYAVIYTMWLKRSTPQNIVIGGAAGAFPPMIGWAAATGEITWDSLVLFMII 186
Query: 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQ-RTALVALRNCLYLVPLGYLAYDWG 288
+ W PHF AL+ NDY A R+ + + G+ T AL + + P+G L + G
Sbjct: 187 FLWTPPHFWALSLFTTNDYEAA--RIPMMPNVKGELSTRRQALFYAVLMAPVGVLPWVMG 244
Query: 289 VTSGWFCLESSLITLAISAAAFSFY-RDRTTQ---KARKMFHASLLYLPVFMSGLLFHRL 344
++ + S+L+ LA A+ + D Q ARK+F SLLYL + LLF L
Sbjct: 245 FAGMFYGVVSTLLGLAFVYYAWRLWAADSQLQMLAAARKLFRFSLLYLAGIFAVLLFEAL 304
Query: 345 T 345
T
Sbjct: 305 T 305
>sp|Q2NCF2|COXX_ERYLH Protoheme IX farnesyltransferase OS=Erythrobacter litoralis (strain
HTCC2594) GN=ctaB PE=3 SV=1
Length = 307
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 13/299 (4%)
Query: 53 AADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAA 112
AA P +L + R ++ L+K R+ LV+ T G G+ + G M
Sbjct: 4 AASPAALPADW-RDFFALTKPRVMTLVIFTGICGLLAAPGAINPILGFTAILCIAMGAGG 62
Query: 113 SANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAG 172
SA +LNQ +E DA MKRT +RPLPSGR+ A + + VA ++ N L+A
Sbjct: 63 SA-ALNQWWEADIDAGMKRTAKRPLPSGRMQATDARDFGILISVASVGIMGIAINWLSAI 121
Query: 173 LAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYF 231
+ A+ ++ YA +YT LK P N +G GA PP++GW A G ++L ++L A ++
Sbjct: 122 ILAAAIVYYAVIYTIWLKPRTPQNIVIGGGAGAFPPMIGWVAVTGEITLMPVLLFAIIFM 181
Query: 232 WQIPHFMALAYLCRNDYAAGGYRMISL--ADASGQRTALVALRNCLYLVPLGYLAYDWGV 289
W PHF ALA + DY G M+ + +AS +R LV + L+P + G
Sbjct: 182 WTPPHFWALALFVKTDYEKVGIPMMPVVKGEASTRRQILV---YSILLIPFAVAPWAIGA 238
Query: 290 TSGWFCLESSLITLAISAAAFSFYRDR-----TTQKARKMFHASLLYLPVFMSGLLFHR 343
T + + + L+T A +A + R T + +++F S+LYL + L+ R
Sbjct: 239 TGAIYGVSALLLTGAFAALSVPVATRRQIEGDTMKPEKRLFGFSILYLFALFAALVADR 297
>sp|Q12IC7|CYOE_SHEDO Protoheme IX farnesyltransferase OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=cyoE PE=3
SV=1
Length = 301
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/186 (40%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y+E++K ++ L++ T G L + L L + G M+A SA + N L +
Sbjct: 19 RDYFEMTKPKVVALMLLTVLVGMCLALPGAVPLQPLVFGMLGIAMMAGSAAAFNHLIDRR 78
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D M RT RPLP G++SV A ++A S+GV G LL W N LTA L ++LI YA V
Sbjct: 79 IDGLMARTYNRPLPKGKLSVNKAFSFAFSLGVLGFVLLYWWVNPLTAWLTFASLIGYAVV 138
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N +G + GA+PPLLGWTA + N ++L ++ W PHF ALA
Sbjct: 139 YTAYLKRATPQNIVIGGLAGAMPPLLGWTAVTNELHGNALLLVIIIFTWTPPHFWALAIH 198
Query: 244 CRNDYA 249
+ +YA
Sbjct: 199 RKAEYA 204
>sp|A9CJX3|COXX_AGRT5 Protoheme IX farnesyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=ctaB PE=3 SV=1
Length = 317
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 137/282 (48%), Gaps = 9/282 (3%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y+EL K R+ LVV T+ G L G + GL + A ++ +LN ++
Sbjct: 23 RDYFELLKPRVMSLVVFTAFAGLVLAPGEINPILGLI-AILCIAVGAGASGALNMWYDAD 81
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
DA M RT +RP+PSGRI+ R A+ + ++ +L N +AGL A + YA V
Sbjct: 82 IDAVMTRTAKRPIPSGRIAPREALAFGLTLSAFSVVILGLAVNWFSAGLLAFTIFFYAVV 141
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N +G GA PP+LGW G VSL+ +IL ++ W HF ALA
Sbjct: 142 YTMWLKRSTPQNIVIGGAAGAFPPMLGWACVTGGVSLDSVILFLIIFLWTPAHFWALALF 201
Query: 244 CRNDYAAGGYRMISLADASGQR-TALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302
DY A G M + + +G+R T + + + G+ S + + +++++
Sbjct: 202 KMRDYGAVGIPM--MPNVAGERSTKNQMIVYAVLTAAAAVAPFFTGLASAGYGIFAAVLS 259
Query: 303 LAISAAAFSFYR----DRTTQKARKMFHASLLYLPVFMSGLL 340
+F R D A+KMF S+LYL SGLL
Sbjct: 260 AIFVYCSFDVRRMPEGDEKMLPAKKMFAYSVLYLFAIFSGLL 301
>sp|B0TNS4|CYOE_SHEHH Protoheme IX farnesyltransferase OS=Shewanella halifaxensis (strain
HAW-EB4) GN=cyoE PE=3 SV=1
Length = 301
Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 2/277 (0%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y+E++K ++ L++ T G L + + L G M+A SA + N L +
Sbjct: 19 RAYYEMTKPKVVALMLLTVLVGMCLAVPGVVPIVPLIAGMAGIGMMAGSAAAFNHLIDRR 78
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D M RT RPLP GR+S+ A+T++ S+G+ G +L N LTA L ++LI YA V
Sbjct: 79 IDGLMARTYNRPLPKGRVSIAKALTFSCSLGILGFVVLYVLVNPLTAWLTFASLIGYAVV 138
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N VG + GA+PPLLGWTA G N ++L ++ W PHF ALA
Sbjct: 139 YTAYLKRATPQNIVVGGLAGAMPPLLGWTAVTGEFHGNALLLVIIIFAWTPPHFWALAIH 198
Query: 244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITL 303
R +YA M+ + + L L + L G+ + + S+L+++
Sbjct: 199 RRVEYAKVDIPMLPVTHGVEFTKTCIFLYTILLAIAC-LLPVLVGMCGPVYLVSSTLLSV 257
Query: 304 AISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
A+ A K+F S+ +L + LL
Sbjct: 258 TFIYKAWQLKFHEEPGMAMKLFKFSIYHLMLLFIALL 294
>sp|A6H1E4|COXX_FLAPJ Protoheme IX farnesyltransferase OS=Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511) GN=ctaB PE=3 SV=1
Length = 300
Score = 125 bits (314), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 141/275 (51%), Gaps = 18/275 (6%)
Query: 69 ELSKARLSMLVVATSGTGFALG----SGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
E++KA L++ VV +S G+ LG + TI + L G MV AS N+ NQ+ E
Sbjct: 19 EITKAGLAISVVFSSLAGYLLGIHEFNLETIYVL-LMLAIGGYCMVGAS-NAYNQIIEKD 76
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D M RT RP+PSGR+SV A T A+ + + G +L + N TA A ++ LY V
Sbjct: 77 LDTLMNRTKNRPIPSGRMSVNTAFTIATILTITGLTIL-YMINPKTAMFGAISIFLYTCV 135
Query: 185 YTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLC 244
YTPLK + ++ +VGA GAIP +LGW AA + L +FWQ PHF A+ +
Sbjct: 136 YTPLKTVTSLSVFVGAFPGAIPFMLGWVAATNDFGIEAGTLFLIQFFWQFPHFWAIGWFL 195
Query: 245 RNDYAAGGYRMISLADASGQRTALVALRNCLYLVPL--GYLAYDWGVTSGWFCLESS--- 299
DY GG+ M+ +G+R A++ LY + L + +G T + S
Sbjct: 196 FEDYKKGGFYMLP----TGKRDKGTAMQIVLYTLWLTAASILPSFGYTGRLYLTPVSAII 251
Query: 300 --LITLAISAAAFSFYRDRTTQKARKMFHASLLYL 332
L+ L + A Y+++T + A+ + S+ Y+
Sbjct: 252 VVLLGLWMLVYAIKLYKNKTDKSAKTLMLVSVAYI 286
>sp|Q2GJ17|COXX_ANAPZ Protoheme IX farnesyltransferase OS=Anaplasma phagocytophilum
(strain HZ) GN=ctaB PE=3 SV=1
Length = 296
Score = 125 bits (313), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 117/217 (53%), Gaps = 2/217 (0%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R YW+L K R+ LVV T+ TG + G+ L GL + M + +A +LN F+
Sbjct: 17 RDYWQLLKPRIMYLVVFTASTGMIMAPGTIHPLIGLV-SALCIAMGSGAAGALNMWFDSD 75
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
DA M RT RP+PSGRIS A+ ++ + +++ N ++A L A ++ YA V
Sbjct: 76 IDAVMSRTKTRPIPSGRISRAQALECGLALSLLSVFIMSLTVNYVSAILLACSIAFYAVV 135
Query: 185 YT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N +G I GA PP++GWT+ G S+ ++L ++ W PHF AL+ L
Sbjct: 136 YTMVLKRRTPQNIVIGGIAGAFPPVIGWTSVTGIPSIESLLLFMIIFLWTPPHFWALSLL 195
Query: 244 CRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPL 280
R++Y G M+S+ + ++ L++V L
Sbjct: 196 NRDEYKLAGIPMLSVYSVQSTKNHIMGYSLLLFIVAL 232
>sp|A8H9S9|CYOE_SHEPA Protoheme IX farnesyltransferase OS=Shewanella pealeana (strain
ATCC 700345 / ANG-SQ1) GN=cyoE PE=3 SV=1
Length = 301
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 104/186 (55%), Gaps = 1/186 (0%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y+E++K ++ L++ T G L T+ L L G M+A SA + N L +
Sbjct: 19 RAYYEMTKPKVVALMLLTVLVGMCLAVPGTVPLVPLIAGMAGIGMMAGSAAAFNHLIDRR 78
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFV 184
D M RT RPLP GRIS+ A+++AS +G G +L N LTA L ++LI YA V
Sbjct: 79 IDGLMARTYNRPLPKGRISIIKAISFASILGTLGFIILYALVNPLTAWLTFASLIGYAVV 138
Query: 185 YTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL 243
YT LK+ P N VG + GA+PPLLGWTA G N ++L ++ W PHF ALA
Sbjct: 139 YTAYLKRATPQNIVVGGLAGAMPPLLGWTAVTGEFHGNALLLVIIIFAWTPPHFWALAIH 198
Query: 244 CRNDYA 249
+ +YA
Sbjct: 199 RKAEYA 204
>sp|Q82VQ6|COXX_NITEU Protoheme IX farnesyltransferase OS=Nitrosomonas europaea (strain
ATCC 19718 / NBRC 14298) GN=ctaB PE=3 SV=1
Length = 298
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 135/276 (48%), Gaps = 4/276 (1%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
++ L+K R+ L+V T+ G L + L L + G +VA +A +LN L E D
Sbjct: 18 FYRLTKPRVVSLIVFTAVIGMFLSVPGAVPLDKLIFGTVGISLVAGAAAALNCLVEYKFD 77
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A M RT RPLP G++SV + + +G G +L N LT L + YA +YT
Sbjct: 78 AIMARTKGRPLPQGKVSVPETLFFLVLIGGFGLFMLHQWVNPLTMWLTLGTFVGYAIIYT 137
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK + P N +G GA+PP+LGW A G +S + ++L ++ W PHF ALA +
Sbjct: 138 VILKPLTPQNIVIGGASGAMPPVLGWAAVTGEISADALLLFLIIFAWTPPHFWALALYRK 197
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
DYA G M+ + + T L L + L + L Y + SG L S LI AI
Sbjct: 198 TDYAKIGMPMLPVTHGD-EFTRLHVLLYTIILCVVTVLPYLTQM-SGLIYLGSVLILDAI 255
Query: 306 SA-AAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
A Y T Q AR+ F S+ YL + + LL
Sbjct: 256 FFYYAIRIYLHYTDQIAREAFRYSIAYLALLFTALL 291
>sp|Q5R0Y6|CYOE_IDILO Protoheme IX farnesyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=cyoE PE=3 SV=1
Length = 298
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 141/278 (50%), Gaps = 4/278 (1%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124
R Y EL+K R+ L++ T+ G L + + L L TG +++A+A ++N L +
Sbjct: 18 RDYLELTKPRVVALLLLTAVVGMCLATEELVSLKVLVPALTGIGLMSAAAAAINHLVDRH 77
Query: 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAG-TALLAWKANMLTAGLAASNLILYAF 183
DAKM RT+RRPLP G +S T+A+S+GV G L AW N LTA L ++++ YA
Sbjct: 78 IDAKMARTLRRPLPQGNLSPAKVTTFAASIGVIGFVTLYAW-VNPLTAWLTFASMVGYAV 136
Query: 184 VYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAY 242
VYT LK+ P N +G + GA PPLLGWT+ ++ ++L ++ W PHF ALA
Sbjct: 137 VYTMFLKRATPQNIVIGGLAGAAPPLLGWTSVTNEINAPAVLLVMIIFTWTPPHFWALAV 196
Query: 243 LCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302
DYA M+ + + L L V + + + G+T + + S++
Sbjct: 197 HRAKDYARAKVPMLPVTHGIEFTKTCIFLYTVLLTV-VCLMPFLIGMTGMIYLVGVSVLN 255
Query: 303 LAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
A A+ + + A MF S+ +L + LL
Sbjct: 256 AIFLAYAWKLKYSPSKKTAFNMFAFSIWHLMLLFVILL 293
>sp|Q0ADH9|COXX_NITEC Protoheme IX farnesyltransferase OS=Nitrosomonas eutropha (strain
C91) GN=ctaB PE=3 SV=1
Length = 298
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 134/276 (48%), Gaps = 4/276 (1%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
++ L+K R+ L+V T+ G L + L L G +VA +A +LN L E D
Sbjct: 18 FYRLTKPRVVSLIVFTAVIGMFLSVPGAVPLDKLLLGTIGISLVAGAAAALNCLVEYKFD 77
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A M RT RPLP G++SV + + VG G +L N LT L + YA +YT
Sbjct: 78 AIMARTKGRPLPQGKVSVPETLFFLVMVGGLGLFILHQWINPLTMWLTLGTFVGYAIIYT 137
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK + P N +G GA+PP+LGW A G +S + ++L ++ W PHF ALA +
Sbjct: 138 VILKPLTPQNIVIGGASGAMPPVLGWAAITGEISADALLLFLIIFAWTPPHFWALALYRK 197
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
+DYA G M+ + + T L L + L L Y SG L S LI AI
Sbjct: 198 SDYAKIGMPMLPVTHGE-EFTRLHVLLYTIILCIATVLPY-LTQMSGLIYLVSVLILDAI 255
Query: 306 SA-AAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
A Y T Q AR+ F S++YL + + LL
Sbjct: 256 FLYYAIRIYLHYTDQIAREAFRYSIIYLALLFTALL 291
>sp|A4G936|COXX_HERAR Protoheme IX farnesyltransferase OS=Herminiimonas arsenicoxydans
GN=ctaB PE=3 SV=1
Length = 294
Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 136/278 (48%), Gaps = 8/278 (2%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
YW L+K R++ L V + G L + D + G ++A +A ++N L E D
Sbjct: 14 YWALTKPRVTQLAVFCAVIGMFLATPDLPDWKIVIAATIGIWLLAGAAFAINCLVEREID 73
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
++M RT RRP+ G I+V + ++ +G AG +L N LT L + + YA +YT
Sbjct: 74 SRMARTARRPMAQGEITVPQTLVFSGVIGGAGMWVLYNFVNPLTMWLTFATFVGYAVIYT 133
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK P N +G + GA+PP LGW A + + IL ++ W PHF ALA R
Sbjct: 134 IILKPATPQNIVIGGLSGAMPPALGWAAVANDLPMQAWILVLIIFIWTPPHFWALALYRR 193
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLY---LVPLGYLAYDWGVTSGWFCLESSLIT 302
++YA G M+ + TA LY LV L + G++ + + ++++
Sbjct: 194 DEYAKSGLPMLPITHG----TAFTQFHIWLYTIALVATTMLPFAVGMSGLIYLVVAAVLD 249
Query: 303 LAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLL 340
+ A+ YR T ARKMF S++YL + + LL
Sbjct: 250 VIFMWYAWQVYRHYTDMIARKMFTYSIIYLSLLFAALL 287
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,307,555
Number of Sequences: 539616
Number of extensions: 5290261
Number of successful extensions: 16066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 14628
Number of HSP's gapped (non-prelim): 829
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)