Query 014998
Match_columns 414
No_of_seqs 208 out of 1865
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:06:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02776 prenyltransferase 100.0 1.5E-70 3.2E-75 548.0 35.2 340 70-414 1-340 (341)
2 COG0109 CyoE Polyprenyltransfe 100.0 8.2E-59 1.8E-63 451.9 29.7 286 60-346 14-300 (304)
3 KOG1380 Heme A farnesyltransfe 100.0 3E-60 6.5E-65 459.2 8.3 319 61-398 91-409 (409)
4 PRK13362 protoheme IX farnesyl 100.0 1.3E-52 2.8E-57 416.3 34.5 287 59-346 8-297 (306)
5 PRK04375 protoheme IX farnesyl 100.0 6.7E-52 1.5E-56 409.7 34.6 285 61-346 7-292 (296)
6 PRK12869 ubiA protoheme IX far 100.0 2.7E-50 5.7E-55 395.2 33.4 277 63-341 1-278 (279)
7 TIGR01473 cyoE_ctaB protoheme 100.0 4.6E-50 1E-54 393.4 32.5 277 65-342 1-280 (280)
8 PRK12886 ubiA prenyltransferas 100.0 5E-49 1.1E-53 388.3 33.2 282 60-345 4-286 (291)
9 PRK12874 ubiA prenyltransferas 100.0 6.1E-49 1.3E-53 387.7 33.4 281 59-344 3-289 (291)
10 PRK12873 ubiA prenyltransferas 100.0 1.2E-48 2.6E-53 384.8 31.0 278 62-343 5-292 (294)
11 PRK12895 ubiA prenyltransferas 100.0 1.6E-48 3.4E-53 383.3 31.1 275 63-345 2-282 (286)
12 PRK12848 ubiA 4-hydroxybenzoat 100.0 6.5E-48 1.4E-52 378.8 30.9 276 61-342 2-281 (282)
13 PRK12878 ubiA 4-hydroxybenzoat 100.0 1.6E-47 3.4E-52 381.2 33.0 282 58-344 24-313 (314)
14 PRK12870 ubiA 4-hydroxybenzoat 100.0 1E-47 2.3E-52 378.8 30.8 280 60-344 5-289 (290)
15 PLN02809 4-hydroxybenzoate non 100.0 8.4E-47 1.8E-51 372.0 32.1 279 60-345 2-288 (289)
16 PRK12888 ubiA prenyltransferas 100.0 1.3E-46 2.8E-51 370.0 32.8 278 63-346 1-284 (284)
17 PRK12847 ubiA 4-hydroxybenzoat 100.0 1E-46 2.3E-51 370.6 31.4 278 60-343 3-285 (285)
18 TIGR01474 ubiA_proteo 4-hydrox 100.0 1.9E-46 4.1E-51 368.3 32.0 274 65-343 2-280 (281)
19 PRK13106 ubiA prenyltransferas 100.0 2.9E-46 6.3E-51 369.8 31.3 281 57-346 8-298 (300)
20 TIGR01475 ubiA_other putative 100.0 4.7E-46 1E-50 365.4 31.4 277 63-344 1-281 (282)
21 PRK12876 ubiA prenyltransferas 100.0 2.3E-45 5E-50 361.8 32.2 279 62-346 2-299 (300)
22 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.3E-42 2.7E-47 340.6 31.3 274 63-344 2-277 (279)
23 PRK12882 ubiA prenyltransferas 100.0 1.3E-40 2.8E-45 325.8 30.3 269 63-337 3-273 (276)
24 KOG1381 Para-hydroxybenzoate-p 100.0 5.2E-43 1.1E-47 332.7 12.1 292 50-348 50-349 (353)
25 COG0382 UbiA 4-hydroxybenzoate 100.0 5.4E-40 1.2E-44 323.5 31.5 278 61-343 10-288 (289)
26 PRK12884 ubiA prenyltransferas 100.0 1.5E-39 3.2E-44 318.4 31.9 256 61-324 1-258 (279)
27 PRK12883 ubiA prenyltransferas 100.0 6.4E-37 1.4E-41 299.9 30.9 263 63-335 2-269 (277)
28 PRK12871 ubiA prenyltransferas 100.0 5.4E-36 1.2E-40 296.3 31.8 278 61-343 2-295 (297)
29 PLN00012 chlorophyll synthetas 100.0 9.2E-35 2E-39 295.2 31.6 262 60-330 81-359 (375)
30 PRK07566 bacteriochlorophyll/c 100.0 2.1E-34 4.5E-39 287.2 29.9 276 60-343 23-311 (314)
31 PRK06080 1,4-dihydroxy-2-napht 100.0 1.9E-31 4.2E-36 262.9 31.2 205 63-269 2-216 (293)
32 PRK12392 bacteriochlorophyll c 100.0 1.9E-31 4.1E-36 267.4 28.4 248 60-316 8-274 (331)
33 TIGR02056 ChlG chlorophyll syn 100.0 1.3E-30 2.8E-35 259.1 29.9 197 60-262 12-225 (306)
34 TIGR01476 chlor_syn_BchG bacte 100.0 2.6E-30 5.7E-35 253.9 25.7 199 65-268 1-208 (283)
35 PRK12887 ubiA tocopherol phyty 100.0 1.8E-29 3.9E-34 251.1 31.1 203 55-262 4-224 (308)
36 PRK05951 ubiA prenyltransferas 100.0 1.7E-28 3.6E-33 242.9 30.8 199 62-262 2-213 (296)
37 PRK12872 ubiA prenyltransferas 100.0 1.3E-26 2.7E-31 227.5 25.8 274 62-342 2-281 (285)
38 PF01040 UbiA: UbiA prenyltran 100.0 1.6E-26 3.5E-31 221.0 23.8 183 77-262 2-188 (257)
39 PRK13595 ubiA prenyltransferas 100.0 1.1E-25 2.3E-30 221.2 29.2 250 61-330 9-269 (292)
40 PRK13387 1,4-dihydroxy-2-napht 99.9 2.8E-25 6.1E-30 221.9 30.5 199 63-262 2-231 (317)
41 PRK13592 ubiA prenyltransferas 99.9 1.1E-24 2.4E-29 213.6 27.6 217 97-330 45-284 (299)
42 PRK13105 ubiA prenyltransferas 99.9 1.2E-23 2.6E-28 206.7 29.9 189 65-262 2-202 (282)
43 PRK12324 phosphoribose diphosp 99.9 7.2E-24 1.6E-28 209.5 27.5 161 60-226 7-171 (295)
44 PRK08238 hypothetical protein; 99.9 3.7E-24 8E-29 224.3 25.7 187 59-253 186-377 (479)
45 TIGR00751 menA 1,4-dihydroxy-2 99.9 2.2E-23 4.7E-28 205.3 28.8 190 72-262 1-206 (284)
46 PRK12875 ubiA prenyltransferas 99.9 6E-23 1.3E-27 202.0 29.3 199 60-267 4-211 (282)
47 COG1575 MenA 1,4-dihydroxy-2-n 99.9 2.8E-22 6E-27 196.6 28.2 276 62-343 6-301 (303)
48 PLN02922 prenyltransferase 99.9 4.9E-22 1.1E-26 198.3 30.2 198 60-262 11-230 (315)
49 PRK07419 1,4-dihydroxy-2-napht 99.9 6.6E-22 1.4E-26 196.5 30.6 202 61-269 9-221 (304)
50 TIGR02235 menA_cyano-plnt 1,4- 99.9 3.4E-21 7.3E-26 189.9 29.6 196 67-269 2-208 (285)
51 PLN02878 homogentisate phytylt 99.9 4.8E-21 1E-25 186.6 25.0 168 98-269 23-204 (280)
52 PRK13591 ubiA prenyltransferas 99.8 7.2E-18 1.6E-22 166.8 25.3 149 104-269 64-227 (307)
53 KOG4581 Predicted membrane pro 99.5 1.3E-14 2.8E-19 136.4 7.2 227 32-261 28-270 (359)
54 PRK12875 ubiA prenyltransferas 93.4 1.4 3E-05 43.9 12.7 54 104-161 171-224 (282)
55 PRK12884 ubiA prenyltransferas 91.1 8.1 0.00018 37.8 14.8 38 223-261 40-77 (279)
56 PRK12872 ubiA prenyltransferas 89.9 8 0.00017 37.9 13.7 37 104-141 167-203 (285)
57 PRK12882 ubiA prenyltransferas 88.2 15 0.00032 36.1 14.1 36 225-261 43-78 (276)
58 PRK13105 ubiA prenyltransferas 87.9 6.3 0.00014 39.2 11.3 55 104-162 166-220 (282)
59 PRK09573 (S)-2,3-di-O-geranylg 87.2 21 0.00045 35.1 14.5 36 225-261 42-77 (279)
60 PRK07566 bacteriochlorophyll/c 86.9 8.4 0.00018 38.8 11.8 32 109-141 200-231 (314)
61 PRK12324 phosphoribose diphosp 86.6 21 0.00046 35.7 14.4 32 230-261 56-88 (295)
62 TIGR01475 ubiA_other putative 86.2 6 0.00013 39.0 10.1 39 102-141 162-200 (282)
63 TIGR02056 ChlG chlorophyll syn 86.0 19 0.00042 36.0 13.8 33 228-261 62-94 (306)
64 PRK13591 ubiA prenyltransferas 85.7 5.4 0.00012 40.3 9.5 25 116-141 197-221 (307)
65 PLN00012 chlorophyll synthetas 85.3 12 0.00025 38.9 12.0 35 106-141 260-294 (375)
66 PRK06080 1,4-dihydroxy-2-napht 84.2 11 0.00024 37.1 11.0 52 103-158 173-224 (293)
67 PRK07419 1,4-dihydroxy-2-napht 84.2 14 0.00029 37.3 11.7 44 109-156 185-228 (304)
68 PRK12871 ubiA prenyltransferas 83.4 12 0.00027 37.3 11.0 47 94-142 172-218 (297)
69 PRK12874 ubiA prenyltransferas 82.9 16 0.00035 36.4 11.6 46 94-141 164-209 (291)
70 COG1575 MenA 1,4-dihydroxy-2-n 82.9 9.9 0.00021 38.3 9.9 31 101-131 179-209 (303)
71 TIGR01476 chlor_syn_BchG bacte 82.7 21 0.00045 35.1 12.2 33 228-261 46-78 (283)
72 PRK13387 1,4-dihydroxy-2-napht 82.3 15 0.00032 37.1 11.2 52 104-159 195-246 (317)
73 TIGR01474 ubiA_proteo 4-hydrox 82.2 14 0.00031 36.4 10.8 47 94-142 157-203 (281)
74 PRK12888 ubiA prenyltransferas 80.4 26 0.00055 34.8 11.9 47 93-141 155-201 (284)
75 PRK05951 ubiA prenyltransferas 79.9 25 0.00054 35.0 11.7 37 109-149 182-218 (296)
76 PRK12883 ubiA prenyltransferas 79.8 35 0.00076 33.4 12.6 33 228-261 45-77 (277)
77 PRK12847 ubiA 4-hydroxybenzoat 79.8 19 0.00041 35.5 10.8 39 102-141 169-207 (285)
78 PLN02922 prenyltransferase 78.8 21 0.00045 36.1 10.8 50 103-156 193-242 (315)
79 PRK12895 ubiA prenyltransferas 78.4 34 0.00074 34.1 12.1 29 102-130 163-191 (286)
80 PF01040 UbiA: UbiA prenyltran 78.3 24 0.00053 33.2 10.8 45 216-260 18-64 (257)
81 TIGR00751 menA 1,4-dihydroxy-2 77.3 29 0.00062 34.5 11.2 47 108-158 174-220 (284)
82 PRK08238 hypothetical protein; 75.3 59 0.0013 34.8 13.6 31 231-261 237-268 (479)
83 PRK12869 ubiA protoheme IX far 73.7 47 0.001 32.7 11.6 44 218-261 33-78 (279)
84 TIGR02235 menA_cyano-plnt 1,4- 73.1 40 0.00087 33.5 11.0 50 106-159 169-218 (285)
85 PRK12392 bacteriochlorophyll c 72.8 31 0.00068 35.1 10.4 37 104-141 186-222 (331)
86 COG0382 UbiA 4-hydroxybenzoate 72.3 97 0.0021 30.5 13.5 37 225-261 52-89 (289)
87 PRK12887 ubiA tocopherol phyty 71.3 19 0.00041 36.2 8.3 27 105-131 189-215 (308)
88 PRK13362 protoheme IX farnesyl 70.3 83 0.0018 31.6 12.7 51 229-281 56-107 (306)
89 PRK13106 ubiA prenyltransferas 68.5 38 0.00083 33.9 9.8 40 103-143 182-221 (300)
90 PRK04375 protoheme IX farnesyl 67.8 33 0.00071 34.1 9.2 33 229-261 53-86 (296)
91 PRK12878 ubiA 4-hydroxybenzoat 67.4 63 0.0014 32.6 11.1 47 93-141 188-234 (314)
92 PRK12886 ubiA prenyltransferas 66.3 91 0.002 31.0 11.9 47 94-142 159-205 (291)
93 PRK13595 ubiA prenyltransferas 63.3 83 0.0018 31.6 10.9 60 188-254 19-81 (292)
94 TIGR01473 cyoE_ctaB protoheme 62.4 1.3E+02 0.0028 29.5 12.1 36 226-261 41-77 (280)
95 PRK12848 ubiA 4-hydroxybenzoat 61.7 1.2E+02 0.0026 29.8 11.8 47 94-142 159-205 (282)
96 PRK12870 ubiA 4-hydroxybenzoat 61.2 81 0.0018 31.3 10.5 49 94-144 163-211 (290)
97 PRK13592 ubiA prenyltransferas 60.7 1.5E+02 0.0033 29.9 12.2 32 229-261 55-86 (299)
98 PLN02809 4-hydroxybenzoate non 58.4 1.4E+02 0.0031 29.7 11.6 48 94-142 162-209 (289)
99 PRK12873 ubiA prenyltransferas 54.6 1.8E+02 0.0039 29.2 11.6 58 82-141 154-212 (294)
100 PLN02776 prenyltransferase 52.8 1.7E+02 0.0038 30.0 11.4 34 228-261 37-71 (341)
101 KOG3146 Dolichyl pyrophosphate 50.1 78 0.0017 30.4 7.7 35 183-218 143-179 (228)
102 PRK10484 putative transporter; 48.7 3.7E+02 0.008 28.8 15.8 17 108-124 347-363 (523)
103 PF11674 DUF3270: Protein of u 43.4 1.1E+02 0.0024 25.4 6.7 37 270-306 45-81 (90)
104 COG4147 DhlC Predicted symport 41.2 22 0.00048 38.1 2.9 98 102-203 357-455 (529)
105 TIGR00267 conserved hypothetic 39.9 1.3E+02 0.0028 27.5 7.5 26 96-121 26-51 (169)
106 COG4854 Predicted membrane pro 36.5 14 0.00031 31.8 0.5 65 120-187 47-119 (126)
107 COG0738 FucP Fucose permease [ 36.0 1.8E+02 0.0039 30.8 8.5 76 141-216 298-385 (422)
108 PRK04214 rbn ribonuclease BN/u 35.5 5.3E+02 0.012 26.8 14.4 18 106-123 113-130 (412)
109 PRK12876 ubiA prenyltransferas 35.2 4.8E+02 0.01 26.3 12.0 36 106-142 180-215 (300)
110 COG4125 Predicted membrane pro 33.6 1.6E+02 0.0035 26.5 6.6 55 110-167 49-104 (149)
111 PF15111 TMEM101: TMEM101 prot 33.5 4.4E+02 0.0095 25.9 10.0 19 239-257 151-169 (251)
112 PLN02294 cytochrome c oxidase 31.8 39 0.00083 31.3 2.5 20 118-137 88-107 (174)
113 PF01384 PHO4: Phosphate trans 31.7 5.6E+02 0.012 25.9 13.8 25 137-161 14-38 (326)
114 PF08248 Tryp_FSAP: Tryptophyl 30.9 27 0.00059 18.2 0.8 9 405-413 3-11 (12)
115 PLN02878 homogentisate phytylt 28.1 6.2E+02 0.013 25.3 12.0 39 110-152 168-206 (280)
116 PRK09442 panF sodium/panthothe 27.5 3.7E+02 0.008 28.4 9.5 15 109-123 340-354 (483)
117 PF00873 ACR_tran: AcrB/AcrD/A 27.5 8.1E+02 0.018 28.7 13.0 80 207-289 903-984 (1021)
118 PRK09597 lipid A 1-phosphatase 26.0 5.7E+02 0.012 24.1 10.5 99 96-204 75-178 (190)
119 COG2832 Uncharacterized protei 24.8 1.6E+02 0.0034 25.8 4.9 48 144-192 70-117 (119)
120 PRK11383 hypothetical protein; 23.0 4.2E+02 0.0092 23.9 7.4 23 238-260 54-76 (145)
121 PF14256 YwiC: YwiC-like prote 20.2 5.9E+02 0.013 22.2 12.2 12 76-87 8-19 (129)
122 PF06946 Phage_holin_5: Phage 20.1 5.1E+02 0.011 21.7 6.8 16 171-187 38-53 (93)
No 1
>PLN02776 prenyltransferase
Probab=100.00 E-value=1.5e-70 Score=548.03 Aligned_cols=340 Identities=68% Similarity=1.108 Sum_probs=309.3
Q ss_pred HhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHH
Q 014998 70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149 (414)
Q Consensus 70 L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~ 149 (414)
|+||+.+.+++++++.|+++|.++.+++..++++++|++++++++|++||++|+|+|++|+||++||||+|++|+++|+.
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~ 80 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVA 80 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHH
Confidence 57999999999999999999976667888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCChHHHHHHHHH
Q 014998 150 WASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAAL 229 (414)
Q Consensus 150 ~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~ 229 (414)
++++++++|+.++.+++|+.++.++++++++|.++||++||+|++|+++|++.|++|+++||+|++|++++.+|++++++
T Consensus 81 ~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~~~~~~~Lf~~~ 160 (341)
T PLN02776 81 WAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLKQIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMVLAAAL 160 (341)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHccCCchhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999997776678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 014998 230 YFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAA 309 (414)
Q Consensus 230 ~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~~~~il~~~ 309 (414)
++||++||+.++++|+|||+++|+||+|+..+.|++++.+++.+++.+++++++++.+|.++++|+++++++++++++..
T Consensus 161 ~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~ 240 (341)
T PLN02776 161 YFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASA 240 (341)
T ss_pred HHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987789999999999999999999998889888889988999999999999
Q ss_pred HHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccCCCccchhhhhhhccCCCCCccCchhhhhhhhhhccccccc
Q 014998 310 FSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLG 389 (414)
Q Consensus 310 ~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (414)
+++++++|.++++|+|+.|++|++++++++++|+++++++++.+++-+..+... + ...++||+.++++++ +++.+
T Consensus 241 ~~~~~~~~~~~ar~~F~~Sl~yL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~--~~~~~ 315 (341)
T PLN02776 241 ASFYREPTNANARKMFHGSLLYLPAFMALLLLHRVPNDNQVDLRQESELTESLD-G--RAKGREETSLEQVSK--RRAPG 315 (341)
T ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccchhhh-h--hhcchHHHHHHHHHh--hccCc
Confidence 999998888899999999999999999999999999988764333333333221 1 122467888888888 88899
Q ss_pred cccCCcccccccCCCCCCCCCCCCC
Q 014998 390 RQVRAPVAYASVAPFPFLPAPSYAE 414 (414)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (414)
.+++||++|+|+|||||||+|+|+.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (341)
T PLN02776 316 RVARPPVAYASAAPFPFLPAPSYAS 340 (341)
T ss_pred cccCCcchhhccCCCCCCCCCCcCC
Confidence 9999999999999999999999963
No 2
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-59 Score=451.92 Aligned_cols=286 Identities=34% Similarity=0.523 Sum_probs=274.9
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS 139 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps 139 (414)
.++++|+|+||+||+.+.+++++++.|+++|.++..++..++++.+|+.++.+++|++|+++|||+|++|+||++||+|+
T Consensus 14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~ 93 (304)
T COG0109 14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVT 93 (304)
T ss_pred hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCC
Confidence 67889999999999999999999999999998666788889999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCC
Q 014998 140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV 218 (414)
Q Consensus 140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~ 218 (414)
|+|+++||+.++.++.++|+.++++..|+++..+++++++.|+++||. +||+|++|+++|.+.|++||++||+|++|++
T Consensus 94 G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~lKR~T~~NiviGg~aGa~PpliGwaAvtg~~ 173 (304)
T COG0109 94 GLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSI 173 (304)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCcccceeeeeccccccccceeeeeeCCC
Confidence 999999999999999999999997789999999999999999999999 9999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014998 219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLES 298 (414)
Q Consensus 219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a 298 (414)
++.++++++++|+||++|+|+++++.+|||+++|++|+|++.|. +.++++++.+.+.++++++++...|+.++.|.+++
T Consensus 174 ~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~-~~t~~~I~~y~~~l~~~sl~~~~~g~~g~~Y~v~a 252 (304)
T COG0109 174 SLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGE-RRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVA 252 (304)
T ss_pred CchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccH-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 99999999999999999999999999999999999999999986 88999999999999999999888899888899999
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998 299 SLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 299 ~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~ 346 (414)
.++++++++.++++++++|+++++|+|+.|+.|+.+++++++++++..
T Consensus 253 ~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~~lf~~l~id~~~~ 300 (304)
T COG0109 253 TLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSLLL 300 (304)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998765
No 3
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3e-60 Score=459.24 Aligned_cols=319 Identities=48% Similarity=0.765 Sum_probs=284.2
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG 140 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG 140 (414)
.+.+++|+||.||+.+.+++.++..||+++.+. +++..++++.+|+.++++++|++||++|...|.+|+||++||||+|
T Consensus 91 ~k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p-~s~~~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g 169 (409)
T KOG1380|consen 91 GKYARCYLELSKPRLTMLVVLTTMTGYALAPGP-FSFPTLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRG 169 (409)
T ss_pred cchHHHHHHhcccceEEEEeeeccccccccccC-CCcchhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccC
Confidence 467899999999999999999999999999864 8898999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCCh
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSL 220 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~ 220 (414)
+||+.+|+.|+.+.++.|+.++++-+|+++..+|..++++|.++||+|||+++.|+|+|+++|++||++||+|++|.++.
T Consensus 170 ~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTPlKrihiinTWvGavVGAIPPLMGwAAasg~l~~ 249 (409)
T KOG1380|consen 170 RISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTPLKRIHIINTWVGAVVGAIPPLMGWAAASGLLDP 249 (409)
T ss_pred ccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccchhhhhhhhhHHHHHhccCCccchhhhhccCCCc
Confidence 99999999999999999998887668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998 221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300 (414)
Q Consensus 221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~ 300 (414)
.+|+++.++|.||+|||+.+++..|+||.++|++|+++....+ .+++.+++++.+.+++...-.+|+++|||.+.++.
T Consensus 250 ga~iLa~~LyaWQfPHFnaLS~~lR~DYs~~GY~Mma~~np~l--~rr~alr~s~a~~~L~~~~~~~~lT~~wf~i~s~~ 327 (409)
T KOG1380|consen 250 GAMILAGILYAWQFPHFNALSWNLRNDYSKAGYRMMAVTNPGL--CRRVALRYSLAFLPLSYAAPSTDLTTWWFAIESLP 327 (409)
T ss_pred cHHHHHHHHHHhcccchhhhhhhhchhhhhccEEEEEeeccch--hhHHHHHHHHHHhhhhccccccCcccceeeecccc
Confidence 9999999999999999999999999999999999999998632 34567889999998887777789999999999999
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccCCCccchhhhhhhccCCCCCccCchhhhhhhh
Q 014998 301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKK 380 (414)
Q Consensus 301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (414)
+++++.+.+++|++++|.+++||+|+.|+++++++|+++++|+.-++.|+.+-+++.. +. . ...|...|.+
T Consensus 328 ~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~lmll~l~~k~~~~~qq~~~~~~~l------~~-~--~sg~~~s~~~ 398 (409)
T KOG1380|consen 328 LNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLLMLLMLIHKKGRDNQQPDGEEPGL------TN-S--VSGEVKSQRS 398 (409)
T ss_pred HhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccccCcc------cc-c--cccceecccc
Confidence 9999999999999999999999999999999999999999999877555333222111 11 1 2344444444
Q ss_pred hhccccccccccCCcccc
Q 014998 381 KLSYYSSLGRQVRAPVAY 398 (414)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (414)
|. ...+||++|
T Consensus 399 ~~-------~~~~~~v~~ 409 (409)
T KOG1380|consen 399 KG-------DVLKPPVAF 409 (409)
T ss_pred cc-------cccCCCCCC
Confidence 44 258888876
No 4
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=1.3e-52 Score=416.29 Aligned_cols=287 Identities=30% Similarity=0.369 Sum_probs=259.7
Q ss_pred HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998 59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138 (414)
Q Consensus 59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp 138 (414)
..++++|+|+|++||+++.++.+++++|++++..+.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|
T Consensus 8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlp 87 (306)
T PRK13362 8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTV 87 (306)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCC
Confidence 45677899999999999999999999999998655678777778889999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCC
Q 014998 139 SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGH 217 (414)
Q Consensus 139 sG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~ 217 (414)
+|++|++||+.++++++++|+.++..+.|+.+..++.+++++|.++||+ +||++++|.++|++.|++|+++||++++|+
T Consensus 88 sG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~g~ 167 (306)
T PRK13362 88 TGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSLYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQ 167 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHhccCcHhHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999998776567999888888888878999996 999999988888888899999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 014998 218 VSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297 (414)
Q Consensus 218 ~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~ 297 (414)
+++..+++++..++||++||+.++++|+|||+++|+||+|++.|. +++++++..+.+.+++++++++..|..++.|...
T Consensus 168 ~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~-~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~ 246 (306)
T PRK13362 168 FDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGI-AKTKLHIVLYILVFALVTALLPLAGYTGIGYLAV 246 (306)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecCh-HHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 999999999999999999999999999999999999999999985 6777778888888889999999999877888888
Q ss_pred HHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998 298 SSLITLAISAAAFSFYRDR--TTQKARKMFHASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 298 a~~~~~~il~~~~~~~~~~--~~~~a~~~F~~s~~~l~~~l~~~li~~~~~ 346 (414)
+++.++++++.++++++++ +++++||+|+.|++|++++++.++++++.-
T Consensus 247 ~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~~~~~~~~~~~~~ 297 (306)
T PRK13362 247 AAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITALSVMMLLDFVVA 297 (306)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888899999999888743 456799999999999999999999987543
No 5
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=100.00 E-value=6.7e-52 Score=409.65 Aligned_cols=285 Identities=34% Similarity=0.492 Sum_probs=255.9
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG 140 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG 140 (414)
+.++|+|+|++||+++++..+++++|++++.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||||+|
T Consensus 7 ~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG 86 (296)
T PRK04375 7 RATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTG 86 (296)
T ss_pred hhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCC
Confidence 44689999999999999999999999999975567887788899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS 219 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~ 219 (414)
++|++||+.++.++.++|+++++.+.|+.+..++++++++|.++||+ +||++++|+++|.+.|++|+++||++++|+++
T Consensus 87 ~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~ 166 (296)
T PRK04375 87 RISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTLWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLS 166 (296)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhcCCccchHHHHHHHHhHHHHHHHHhCCCCC
Confidence 99999999999999999998876557888888888887767889998 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998 220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299 (414)
Q Consensus 220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~ 299 (414)
+.++++++..++||++||+.++++|+|||+++|+||+|+.+|. +++.+.+..+.+.++.++++++..|..+++|++.++
T Consensus 167 ~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 245 (296)
T PRK04375 167 WEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGI-RVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVAL 245 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCH-HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999984 666666677777777778888887765677877677
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998 300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~ 346 (414)
+.++.+++..+++.+++++++|+|+|+.+++|+.+++++++++.+..
T Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~~~i~~~~~~~~~~~ 292 (296)
T PRK04375 246 LLGAWFLYYAWRLYRKDDRKWARKLFRYSINYLTLLFVALLVDHLLL 292 (296)
T ss_pred HHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888888889999999999999999999999987643
No 6
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=100.00 E-value=2.7e-50 Score=395.22 Aligned_cols=277 Identities=25% Similarity=0.346 Sum_probs=240.7
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|+|+|++||+++.+..+++++|++++.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i 80 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLV 80 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCc
Confidence 47899999999999999999999999986656788778888999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchhhhHhhhhcccccchhhhhccCCCChH
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN 221 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~ 221 (414)
|++||+.+++++.++|+.++..++|+.+..+..++.++|+++||. +||++++|+++|.+.|++++++||++++|++++.
T Consensus 81 s~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~ 160 (279)
T PRK12869 81 NRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTIWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLE 160 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccCChHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999998886448888765555556667899998 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 014998 222 GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLI 301 (414)
Q Consensus 222 ~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~ 301 (414)
++++++.+++|+.+|+|.++++|+|||+++|+||+|+++|. +++.+++..+....+.++.+++. +..++.|++..++.
T Consensus 161 ~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~ 238 (279)
T PRK12869 161 AVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGE-KTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAIL 238 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecH-HHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999984 55655555555545555555544 33356777766667
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHH
Q 014998 302 TLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLF 341 (414)
Q Consensus 302 ~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li 341 (414)
+..+++.+.++++++++++|+|+|+.|++|++++++++++
T Consensus 239 ~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~~~~~~~~~ 278 (279)
T PRK12869 239 SAALMATSIRALLNPTKEEAWKMFKASSPYLALFLLALII 278 (279)
T ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777888888888888999999999999999999987765
No 7
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=100.00 E-value=4.6e-50 Score=393.38 Aligned_cols=277 Identities=38% Similarity=0.572 Sum_probs=246.4
Q ss_pred HHHHhHhhhhHHHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCC
Q 014998 65 RCYWELSKARLSMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRIS 143 (414)
Q Consensus 65 k~yl~L~RP~~~~~~~~~~~~G~llA~~~~-~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS 143 (414)
|+|+|++||+++.++.+++++|++++.+.. +++..+++++++++++++++|++|||+|+|+|++|+||++||+|+|++|
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is 80 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRIS 80 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcC
Confidence 479999999999999999999999986543 6787888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc-CCCcccchhhhHhhhhcccccchhhhhccCCCChHH
Q 014998 144 VRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG 222 (414)
Q Consensus 144 ~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt-~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~ 222 (414)
++||+.+++++.++|+.++..+.|+.+..++++++++|.++|| .+||++++|+++|.+.|++|+++||++++|++++..
T Consensus 81 ~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~~lKr~~~~~~~v~~~~g~~~~l~g~~a~~g~~~~~~ 160 (280)
T TIGR01473 81 PREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGA 160 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcChhhccCCchhHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999998866556899999999998877789999 499999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Q 014998 223 MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302 (414)
Q Consensus 223 ~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~~ 302 (414)
++++...++||++|++.++++|+|||+++|+||+|+++|. +++...+..+.+.+++++++++..+..++.|++.+++.+
T Consensus 161 ~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 239 (280)
T TIGR01473 161 WLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGE-RITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLG 239 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999984 555555666666677777777766665677877777788
Q ss_pred HHHHHHHHHhhcCC-cHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998 303 LAISAAAFSFYRDR-TTQKARKMFHASLLYLPVFMSGLLFH 342 (414)
Q Consensus 303 ~~il~~~~~~~~~~-~~~~a~~~F~~s~~~l~~~l~~~li~ 342 (414)
..+++.++++.+++ ++++|++.|+.+++|++++++++++|
T Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~~~~~~~~~~ 280 (280)
T TIGR01473 240 ALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALLFVALLID 280 (280)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888877 67789999999999999999887764
No 8
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5e-49 Score=388.34 Aligned_cols=282 Identities=19% Similarity=0.235 Sum_probs=236.5
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS 139 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps 139 (414)
+.+++|+|+||+||++..+..+++++|+++|.++.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~s 83 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPA 83 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCC
Confidence 34678999999999999999999999999997666787778889999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998 140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS 219 (414)
Q Consensus 140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~ 219 (414)
|++|++||+.+.+.+.+.++ ++..+.|+.++.++++++++ .++||++||+++++.+++++.+++++++||.+++|+++
T Consensus 84 G~is~~~A~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~~g~~~~~~~l~g~~a~~g~~~ 161 (291)
T PRK12886 84 GLISKGSAILFIVLSSLLML-FAAWFLNPLCLYLSPPALFF-LLLYSYCKRFTALAHVVLGFCLALAPLGAWIAIRGTIE 161 (291)
T ss_pred CCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHhhhhccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999998655444444 44346899999999888887 89999999999997666666678999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998 220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299 (414)
Q Consensus 220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~ 299 (414)
+.++++++..++||.+||+.++++|+|||+++|+||+|+++|. +++.+++..+....+.++++++..+..++.|++.++
T Consensus 162 ~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 240 (291)
T PRK12886 162 LPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV-NGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLA 240 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc-hhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999984 555555545555555566666555544567777666
Q ss_pred HHHHHHHHHHHHhhcCCc-HHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 014998 300 LITLAISAAAFSFYRDRT-TQKARKMFHASLLYLPVFMSGLLFHRLT 345 (414)
Q Consensus 300 ~~~~~il~~~~~~~~~~~-~~~a~~~F~~s~~~l~~~l~~~li~~~~ 345 (414)
+.+..+++ +.+..+++| ++.|++.|+.|.+++.+++++++++.+.
T Consensus 241 ~~~~~~l~-~~~~~~~~~~~~~~~~~F~~~~~~~~~l~~~~~~~~~~ 286 (291)
T PRK12886 241 VTGILLLY-EHWLLRGGDLTRLDAAFFNMNGYISVTLFAATLFDRLF 286 (291)
T ss_pred HHHHHHHH-HHHHhCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 77777675 566677777 4689999999888887899999988654
No 9
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=6.1e-49 Score=387.69 Aligned_cols=281 Identities=19% Similarity=0.169 Sum_probs=227.5
Q ss_pred HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998 59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGS-----GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM 133 (414)
Q Consensus 59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~-----~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~ 133 (414)
++++++|+|+|++||+++++..+.+++|++++. .+.+++..+++++++++++++++|++|||+|+|+|++|+||+
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~ 82 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFKLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTA 82 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCC
Confidence 577899999999999999999999999999886 345788888899999999999999999999999999999999
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhh
Q 014998 134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTA 213 (414)
Q Consensus 134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A 213 (414)
+||+|+|++|++||+.+++++.++++.+++ ++|+.+..+++..++. +++||++||+++++.+++++.+++|+++||.+
T Consensus 83 ~RPl~sG~is~~~a~~~~~~~~~~~~~~~~-~~n~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~~g~~~~~~~l~G~~a 160 (291)
T PRK12874 83 NRPSVDGRISVKSMVLFIVLNALIFIGVSY-FINPLAFKLSFPFLIV-LGGYSYFKRFSSLAHLVLGLSLGLAPIAGVVA 160 (291)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887777664 6899999888665554 89999999999996555555678999999999
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 014998 214 AVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGW 293 (414)
Q Consensus 214 ~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~ 293 (414)
++|.+++..+++++..++||.+||+.++++|+|||+++|+||+|+++|. +++.+++..+.. +..+.++....+....+
T Consensus 161 v~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (291)
T PRK12874 161 VLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE-KATLFISRLFHL-LAVLFWLLFVWCAHLGL 238 (291)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh-HhHHHHHHHHHH-HHHHHHHHHHHHhcchH
Confidence 9999998899999999999999999999999999999999999999974 444444333333 22233332222333335
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHH-HHHHHHHh
Q 014998 294 FCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFM-SGLLFHRL 344 (414)
Q Consensus 294 y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l-~~~li~~~ 344 (414)
|++++++++.++++.++++.++++++. ++.|+.++.|+++++ ++++++.+
T Consensus 239 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~ff~sn~~l~~l~~~~~~~~~~ 289 (291)
T PRK12874 239 FAYLGVIVSALILLYEHYLVRKDFKKI-DKAFFTLNGYLGIVFFIFIVLDVL 289 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555677778777888888887777664 557666666665544 55566654
No 10
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-48 Score=384.85 Aligned_cols=278 Identities=20% Similarity=0.172 Sum_probs=232.3
Q ss_pred HhHHHHHhH---hhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998 62 HYGRCYWEL---SKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138 (414)
Q Consensus 62 ~~lk~yl~L---~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp 138 (414)
+++++|+|| .||....++++++++|++++.++.+++..++++++|++++++++|++||++|+|+|++|+||++||+|
T Consensus 5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~ 84 (294)
T PRK12873 5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSLLLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLA 84 (294)
T ss_pred HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCC
Confidence 458899999 67888999999999999988765577877889999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhcc
Q 014998 139 SGRISVRHAVTWASSVGVAGTALLAWK---ANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 139 sG~IS~~~Al~~~~~l~~~gl~ll~~~---~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~ 215 (414)
+|++|++||+.+++++.++++.+++.+ .|+.++.+++++++. +++||++||+|+++++++++.+++|+++||.|++
T Consensus 85 sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~-~~~Y~~~KR~t~~~~~vlg~~~a~~~l~gw~Av~ 163 (294)
T PRK12873 85 RGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPP-ILIYPSAKRWFAYPQAILALCWGFAVLIPWAAAE 163 (294)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-HHHHHHHHhccccchHHHHHHHHhHHHHHHHHHh
Confidence 999999999999999999998877533 378899999888885 8999999999999877777677899999999999
Q ss_pred CCCChH--HHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHH
Q 014998 216 GHVSLN--GMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGW 293 (414)
Q Consensus 216 g~~~~~--~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~ 293 (414)
|++++. .+++++.+++||++||++|++||+|||+++|+||+|+++|. +.+......+.+..+.+...++..+++ +.
T Consensus 164 g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ll~~~g~~~~l~-~~ 241 (294)
T PRK12873 164 GSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSIFLALAAFIAQVG-FI 241 (294)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHHHHHHHHHHhCCc-HH
Confidence 998863 44556899999999999999999999999999999999983 444444566666666677777888884 56
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 294 FCLESSLITLAISAAAFSFYRDRT--TQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 294 y~~~a~~~~~~il~~~~~~~~~~~--~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
|++. +++...++...+..++.++ +++|.+.|+.|.+.+.++++++++++
T Consensus 242 y~~~-~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~i~~g~~~~~ 292 (294)
T PRK12873 242 FWPF-WLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSLLLLGLILAR 292 (294)
T ss_pred HHHH-HHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6643 3333333434455566655 58999999999999999999988753
No 11
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-48 Score=383.28 Aligned_cols=275 Identities=16% Similarity=0.136 Sum_probs=224.1
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|.|+|++||++++++++++++|+++|.++.+++..+++.+++++++++++|++||++|+|+|++|+||++||||+|++
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~i 81 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPIKILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRI 81 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCC
Confidence 57899999999999999999999999997655676677788889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhccCCCCh-
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL- 220 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~- 220 (414)
|++||+.+.++++++|+.++. ++|++++.++...+.+ ...|+++||+|++ |+++|...| +++++||.|++|++++
T Consensus 82 s~~~A~~~~~~~~~~~~~~~~-~ln~l~~~l~~~~~~l-~~~yp~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~g~~~~~ 158 (286)
T PRK12895 82 KMREAIAFTIIFIAIFEICTF-LLNRLVFILSPIVIFL-FIIDPFLKRYTAWRHIYMGSIIG-LGVLAGYLAVIPAFPYN 158 (286)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhCccccHHHHHHHHH-hHHHHHHHHHcCCCCch
Confidence 999999999999999987664 7899999988887766 5667779999999 588999997 8999999999998864
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHH--HHHHHHHHHHHHHHHhhchhHHHHHH
Q 014998 221 -NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVAL--RNCLYLVPLGYLAYDWGVTSGWFCLE 297 (414)
Q Consensus 221 -~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~--~~~l~lv~ls~l~~~~gl~~~~y~~~ 297 (414)
.++++++..++|+.++|++|++||+|||++.|+||+|+++| ++++..+. .+.+..+.+...++..+ +++|++
T Consensus 159 ~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG--~~~~~~i~~~~~~~~~~~~~~~g~~~~--~~~y~~- 233 (286)
T PRK12895 159 LLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYG--IKNGLYISDIFHISSLILFWISGIYIR--TLWYLA- 233 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHC--CccHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH-
Confidence 45678999999999999999999999999999999999997 44443322 22232222222333333 455654
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHH-HHHHHHhhHHHHHHHHHHHHHHhh
Q 014998 298 SSLITLAISAAAFSFYRDRTTQKA-RKMFHASLLYLPVFMSGLLFHRLT 345 (414)
Q Consensus 298 a~~~~~~il~~~~~~~~~~~~~~a-~~~F~~s~~~l~~~l~~~li~~~~ 345 (414)
++++...++.+.....+.+|+++| .+.|+.|.+++.+++++++++...
T Consensus 234 ~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~ 282 (286)
T PRK12895 234 ALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFIGFVFLIGIILSLRF 282 (286)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHHHHHHHHHHHHHhcc
Confidence 444444444444566777888999 567889999999999998888654
No 12
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=6.5e-48 Score=378.81 Aligned_cols=276 Identities=20% Similarity=0.214 Sum_probs=236.8
Q ss_pred HHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCc
Q 014998 61 RHYGRCYWELSK---ARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPL 137 (414)
Q Consensus 61 ~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPL 137 (414)
++++++|+|++| |+...+.++++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||+
T Consensus 2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 81 (282)
T PRK12848 2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLWVLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPL 81 (282)
T ss_pred chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCC
Confidence 467899999996 66677888899999999876667777778888999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccC
Q 014998 138 PSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVG 216 (414)
Q Consensus 138 psG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g 216 (414)
|+|++|++||+.++.++.++|+++++ .+|+.++.++++++++ .++||++||++.++ +++|... ++++++||.++++
T Consensus 82 ~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-g~~~~~g~~a~~~ 158 (282)
T PRK12848 82 ASGAVSEKEALALFVVLVLVAFLLVL-TLNTLTIWLSVAALAL-AWIYPFMKRYTHLPQVVLGAAF-GWGIPMAFAAVQG 158 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHhHHhcCcccHHHHHHHH-HHHHHHHHHHHhC
Confidence 99999999999999999999987764 6899999999888887 88999899999885 5556655 5888999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 014998 217 HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCL 296 (414)
Q Consensus 217 ~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~ 296 (414)
++++.++++++..++|+.+||+.++++|+|||+++|+||+|++.|. +++.+.+..+.+.++.++++++..+++ ++|++
T Consensus 159 ~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~ 236 (282)
T PRK12848 159 SVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR-YDKLIIGLLQLATLALLAWAGWLLGLG-WAYYW 236 (282)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHH
Confidence 9999999999999999999999999999999999999999999985 555555566666677777888888884 66765
Q ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998 297 ESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH 342 (414)
Q Consensus 297 ~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~ 342 (414)
...+.++.+++. ...++.+++++|++.|+.|.+++++++++++++
T Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~F~~n~~~g~~l~~~~~~~ 281 (282)
T PRK12848 237 GLLVAAALFVYQ-QKLIRDREREACFKAFLNNNWVGLVLFAGIAAS 281 (282)
T ss_pred HHHHHHHHHHHH-HHHcCCCCHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 555555555555 456777889999999999999999999988876
No 13
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1.6e-47 Score=381.24 Aligned_cols=282 Identities=21% Similarity=0.219 Sum_probs=237.4
Q ss_pred hHhHHhHHHHHhHh---hhhHHHHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC
Q 014998 58 SLIRHYGRCYWELS---KARLSMLVVATSGTGFALGSGS-----TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129 (414)
Q Consensus 58 ~~~~~~lk~yl~L~---RP~~~~~~~~~~~~G~llA~~~-----~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~ 129 (414)
..++.++++|+||+ ||+.+.+.++++++|+++|.+. ..++..+++++++++++++++|++|||+|+|+|++|
T Consensus 24 ~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~ 103 (314)
T PRK12878 24 RRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDIDAKV 103 (314)
T ss_pred hhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34668899999999 9999999999999999998653 567777888999999999999999999999999999
Q ss_pred CCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccch
Q 014998 130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLL 209 (414)
Q Consensus 130 ~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~ 209 (414)
+||++||+|+|++|++||+.++.++.++|+.+++ ..|+.++.++++++++ +++||++||+++++..++++.+++++++
T Consensus 104 ~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~-~~~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~ 181 (314)
T PRK12878 104 ARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAI-VAAYPFMKRITWWPQFFLGLAFSWGALM 181 (314)
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998875 6799999999999888 8999999999999755544456799999
Q ss_pred hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014998 210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGV 289 (414)
Q Consensus 210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl 289 (414)
||++++|++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+....+.+.++.+++.++..++
T Consensus 182 g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (314)
T PRK12878 182 GWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD-HTKTWLVLFYGLAVLLMGLAFWLAGV 260 (314)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch-hhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999984 55555555555555555555566676
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998 290 TSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344 (414)
Q Consensus 290 ~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~ 344 (414)
+++|++..+..++.+.+. ....+.+++++|+++|+.|..++++++++++++.+
T Consensus 261 -~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~F~~n~~~~~ll~~~l~~~~~ 313 (314)
T PRK12878 261 -PLLALLGLLAAAAHLAWQ-IARLDIDDPDQCLRLFKSNRDAGLLIFLGLVVGGL 313 (314)
T ss_pred -cHHHHHHHHHHHHHHHHH-HHHcccCChHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 466665444444443333 33334567888999999999999999999988754
No 14
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1e-47 Score=378.81 Aligned_cols=280 Identities=18% Similarity=0.188 Sum_probs=233.6
Q ss_pred hHHhHHHHHhHhhhhH---HHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998 60 IRHYGRCYWELSKARL---SMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~---~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP 136 (414)
++.++++|+|++||++ ..+.++++++|+++|.++.+++..++++++|++++++++|++||++|+|+|++|+||++||
T Consensus 5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RP 84 (290)
T PRK12870 5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRP 84 (290)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCC
Confidence 4568899999986555 6667789999999987667788878889999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhcc
Q 014998 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~ 215 (414)
||+|++|++||+.+++++.++|+.++. ++|+.++.+++.+++. .++||++||+++++ +++|... ++++++||.+++
T Consensus 85 L~sG~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~-~~~~l~g~~a~~ 161 (290)
T PRK12870 85 LASRRLSVKVGIVIAIVALLCAAGLAF-FLNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAW-GFAVLISWSAVT 161 (290)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHhhhhhhccccceeeehHHH-HhHHHHHHHHHc
Confidence 999999999999999999999998775 6899999999888876 89999999999995 5666655 589999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014998 216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFC 295 (414)
Q Consensus 216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~ 295 (414)
|++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++......+.+..+.++.+++..|++ ++|+
T Consensus 162 g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~y~ 239 (290)
T PRK12870 162 GHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR-YAPEAIGLFFALTVGFLAILGVLLELH-LPFW 239 (290)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhCCc-HHHH
Confidence 99999999999999999999999999999999999999999999974 333333344555566677778888875 5666
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998 296 LESSLITLAISAAAFSFY-RDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344 (414)
Q Consensus 296 ~~a~~~~~~il~~~~~~~-~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~ 344 (414)
+...+....+.++...+. +.++++.|++.|+.|.+++.+++++++++.+
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 240 IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIGFLLLAGMILGSL 289 (290)
T ss_pred HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 433333445455544433 3356778999999999999999999988765
No 15
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=8.4e-47 Score=372.01 Aligned_cols=279 Identities=20% Similarity=0.230 Sum_probs=228.1
Q ss_pred hHHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCC
Q 014998 60 IRHYGRCYWELSK---ARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMR 134 (414)
Q Consensus 60 ~~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~ 134 (414)
+++++++|+||+| |..+.+..+|..+|..++. ++.+++..++++++|++++++++|++||++|+|+|++|+||++
T Consensus 2 ~~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~ 81 (289)
T PLN02809 2 LPPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL 81 (289)
T ss_pred CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence 3568899999875 7778888889988888774 3347787788899999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhh
Q 014998 135 RPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTA 213 (414)
Q Consensus 135 RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A 213 (414)
||||+|++|++||+.+..++.++|+.+++ ++|+.++.++++++++ +++||++||+++++ ++.|. .+++++++||.+
T Consensus 82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~-~~~~~~l~g~~a 158 (289)
T PLN02809 82 RPIASGALTPFQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLL-VFTYPLMKRFTFWPQAFLGL-TFNWGALLGWAA 158 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhHHHhcCcchHHHHHH-HHHHHHHHHHHH
Confidence 99999999999999999999999998875 6799999999998877 89999999999996 55555 557999999999
Q ss_pred ccCCCChHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHHHHHHHHhhchh
Q 014998 214 AVGHVSLNGMI-LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPLGYLAYDWGVTS 291 (414)
Q Consensus 214 ~~g~~~~~~~l-L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~ls~l~~~~gl~~ 291 (414)
++|++++..++ ++...++|+++||+++++||+|||+++|+||+|+++| ++++.++..+. +....+...++..+++
T Consensus 159 v~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G--~~~~~~i~~~~~~~~~~l~~~g~~~~~~- 235 (289)
T PLN02809 159 VKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFG--DDTKLWLTGFGAASIGGLALSGYNAGLG- 235 (289)
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhc--HHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 99998877765 8888999999999999999999999999999999997 44555543322 2223333345556664
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 014998 292 GWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLT 345 (414)
Q Consensus 292 ~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~ 345 (414)
++|++. ..+...++....+.++.+++++|.+.|+.|.+++.+++++++++++.
T Consensus 236 ~~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~~~F~~n~~~g~~~~~~~~~~~~~ 288 (289)
T PLN02809 236 WPYYAG-LAAAAGHLAWQIQTVDLSSRADCNRKFVSNKWFGAIVFAGIVLGKLF 288 (289)
T ss_pred HHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 556643 33333344455666777889999999999999999999999988764
No 16
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-46 Score=370.01 Aligned_cols=278 Identities=17% Similarity=0.130 Sum_probs=223.1
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGS---GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS 139 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~---~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps 139 (414)
++|.|+|++||+|+++..+.++.|.+++. ++.+++..+++.+++++++++++|++||++|+|+|++|+||++||||+
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~s 80 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWADLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVT 80 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCC
Confidence 47899999999999999998888887764 456788888899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccCCC
Q 014998 140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVGHV 218 (414)
Q Consensus 140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g~~ 218 (414)
|++|++||+.+++++.++++.++ .++|+.++.++.++++. .++|+++||+++++ +++|. .+++++++||++++|++
T Consensus 81 G~is~~~a~~~~~~~~~~~l~l~-~~l~~~~~~l~~~~~~~-~~~Y~~~Kr~t~~~~~~lg~-~~~~~~l~g~~a~~g~~ 157 (284)
T PRK12888 81 GAVSVRTAWTGALVALAVFLGAA-ALLNPLCLALAPLAVAP-LVVYPYAKRFTNFPHAILGL-AQAVGPVGAWIAVTGTW 157 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHHHhhcccchhhHHHHH-HHHHHHHHHHHHHcCCC
Confidence 99999999999987777666665 46899999998888876 78999999999996 55555 55799999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHH-HHHHHHHHHHHHHhhchhHHHHHH
Q 014998 219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRN-CLYLVPLGYLAYDWGVTSGWFCLE 297 (414)
Q Consensus 219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~-~l~lv~ls~l~~~~gl~~~~y~~~ 297 (414)
++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+..... .+..+.+...++..++ ++.|++.
T Consensus 158 ~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~-~~a~~~~~~~~~~~~~ll~~~~~~~~~-~~~y~~~ 235 (284)
T PRK12888 158 SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV-RAALWASRVAHVVTFALFVWFGLAVGF-GALWWIG 235 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc-hhHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHH
Confidence 99999999999999999999999999999999999999999974 3333332222 2222222223344455 4566653
Q ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHH-HhhHHHHHHHHHHHHHHhhc
Q 014998 298 SSLITLAISAAAFSFYRDRTTQKARKMFH-ASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 298 a~~~~~~il~~~~~~~~~~~~~~a~~~F~-~s~~~l~~~l~~~li~~~~~ 346 (414)
.. +...++.+.+++.+.+|+++|.+.|+ .|.+.+.+++++++++.+.+
T Consensus 236 ~~-~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~ig~~~~~~~~~~~~~~ 284 (284)
T PRK12888 236 LA-ITAGAFAYEHAIVSPTDLSRVNRAFFTANGFVGIALFGFALLDLLVR 284 (284)
T ss_pred HH-HHHHHHHHHHHHcCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 33 33333444456777788899998976 66667777888888887653
No 17
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=1e-46 Score=370.63 Aligned_cols=278 Identities=19% Similarity=0.212 Sum_probs=233.5
Q ss_pred hHHhHHHHHhHhhhhH---HHHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCC
Q 014998 60 IRHYGRCYWELSKARL---SMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRR 135 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~---~~~~~~~~~~G~llA~~~~-~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~R 135 (414)
+++++++|+|++||++ ..++.+++++|++++.++. +++...++++++++++++++|++|||+|+|+|++|+||++|
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~R 82 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNR 82 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCC
Confidence 3457899999887764 5567889999999986543 67877889999999999999999999999999999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhc
Q 014998 136 PLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAA 214 (414)
Q Consensus 136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~ 214 (414)
|+|+|++|++||+.++.++.++|+.+++ ++|+.++.++++++++ .++||++||+++++ +++|.. +++++++||.++
T Consensus 83 pl~sG~is~~~a~~~~~~l~~~~~~l~~-~~~~~~~~~~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~-~~~~~l~~~~a~ 159 (285)
T PRK12847 83 PLASGALSVKQALILLFILLLIALVILL-LLNKTTIYLSFIAVIL-IVLYPLMKRFFYWPQLFLGFT-FNMGILMAFAAV 159 (285)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHhccccccCCcccHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999988875 6899999999999888 89999999999996 455554 469999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 014998 215 VGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWF 294 (414)
Q Consensus 215 ~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y 294 (414)
+|++++.++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+....+.+....++++++..|+++ +|
T Consensus 160 ~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 237 (285)
T PRK12847 160 QNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN-KTRKYILRLYIISLILWLILGIISSLHN-IF 237 (285)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc-ccHHHHHHHHHHHHHHHHHHHHHhcCcH-HH
Confidence 999999999999999999999999999999999999999999999984 4555555555565666677778888864 44
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 295 CLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 295 ~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
|....+ ...++.......+.+|+++|+|.|+.|.+++.+++++++++|
T Consensus 238 y~~~~~-~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~~ 285 (285)
T PRK12847 238 YLAILA-AAGIFYYQYKLLDFDNPANCMYAFKANHYVGLLLFLGAVLGR 285 (285)
T ss_pred HHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHhHHHHHHHHHHHHhCC
Confidence 433222 233444445567778888999999999999999999988764
No 18
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=1.9e-46 Score=368.30 Aligned_cols=274 Identities=20% Similarity=0.227 Sum_probs=229.4
Q ss_pred HHHHhH---hhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccC
Q 014998 65 RCYWEL---SKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPS 139 (414)
Q Consensus 65 k~yl~L---~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLps 139 (414)
++|.|+ .||+.+.+..+++.+|+.++.. +.+++..+++++++++++++++|++|||+|+|+|++|+||++||+|+
T Consensus 2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~s 81 (281)
T TIGR01474 2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLAS 81 (281)
T ss_pred hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCC
Confidence 456655 4789999999999999999864 34567667788899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchhhhHhhhhcccccchhhhhccCCCC
Q 014998 140 GRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVS 219 (414)
Q Consensus 140 G~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~ 219 (414)
|++|++||+.++.+++++|+.+++ ..|+.++.++++++++ .++||.+||+++++.+++++.+++++++||.+++|+++
T Consensus 82 G~is~~~a~~~~~~~~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~ 159 (281)
T TIGR01474 82 GAVSVRQAILFLLVQLLVALGVLL-QLNPLTILLGVASLAL-VATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLS 159 (281)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH-HHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999999999999998875 6899999999999988 99999999999996444444557999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998 220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299 (414)
Q Consensus 220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~ 299 (414)
+..++++...++|+.+||++++++|+|||+++|+||+|+++|. +++......+.+.++.+++.++..+. +++|++...
T Consensus 160 ~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~ 237 (281)
T TIGR01474 160 TAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD-NTKPWLGGLYALMILLLALAGLIAGL-GPVYYLGLA 237 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHH
Confidence 9888899999999999999999999999999999999999984 44444444555545555555555565 466776555
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
+.+..+++.... .+++|+++|+++|+.|.+++++++++++++.
T Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~F~~~~~~~~~l~~~~~~~~ 280 (281)
T TIGR01474 238 AAALLLIRQIAT-LDIRDPENCLKLFKANNYVGLLLFAGIALGW 280 (281)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 556666666554 4677888999999999999999999999875
No 19
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.9e-46 Score=369.75 Aligned_cols=281 Identities=15% Similarity=0.123 Sum_probs=228.7
Q ss_pred hhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998 57 FSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136 (414)
Q Consensus 57 ~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP 136 (414)
.++.+.++++|+||+||++.++..+++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||
T Consensus 8 ~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RP 87 (300)
T PRK13106 8 LNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRP 87 (300)
T ss_pred chhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCC
Confidence 34577889999999999999999999999999997777888888899999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhcc
Q 014998 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~ 215 (414)
+|+|++|++||+.+.+++.+.+++++ .++|+.++.++.+++++ .++||++||++++ |+++|..+| +++++||.+++
T Consensus 88 l~sG~is~~~A~~~~~~~~~~~~~~~-~~ln~~~~~l~~~~~~~-~~~Y~~~KR~t~~~~~~lg~~~~-~~~~~G~~a~~ 164 (300)
T PRK13106 88 LVTGAIKISEAKALITAGLILFFASA-YLVNRWALLLSPIVALI-AMSYPYMKRYTAFANYHLASIQG-LAVFSGAVAVL 164 (300)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHhHHhcCCcchHHHHHHHHH-HHHHHHHHHHc
Confidence 99999999999999866555555544 47899999999888877 7899999999999 699999886 78999999987
Q ss_pred CCC--------ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHH-HHH
Q 014998 216 GHV--------SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYL-AYD 286 (414)
Q Consensus 216 g~~--------~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l-~~~ 286 (414)
|.. +..++++++..++|+.++|++|++||+|||++.|+||+|+++| +++.+++.......+.+..+ .+.
T Consensus 165 g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G--~~a~~~~~~~~~~~v~l~~~~~~~ 242 (300)
T PRK13106 165 GLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG--KWALTFAGLNQLFSVVLDLLGDLY 242 (300)
T ss_pred CCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh--hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 743 2455778888999999999999999999999999999999986 55544433333333333333 345
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998 287 WGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 287 ~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~ 346 (414)
.++ ++.|++..++.+..++++.... +.+ ++|.+.|+.|.+.+.+++++++++.+.+
T Consensus 243 ~~l-g~~y~~~~~~~~~~l~~~~~~~-~~~--~~~~~~F~~n~~ig~~~~~~~~~~~~~~ 298 (300)
T PRK13106 243 YGL-GPIAIAATILHGLIMAYAYYLA-SKK--GDFGRAFYYNIYSSIVLGLGIIIDVLLG 298 (300)
T ss_pred hCC-cHHHHHHHHHHHHHHHHHHHHh-CCc--hHHHHHHHHccHHHHHHHHHHHHHHHHc
Confidence 566 4667654444555556554443 333 8899999999999999999999988765
No 20
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=4.7e-46 Score=365.37 Aligned_cols=277 Identities=21% Similarity=0.167 Sum_probs=225.8
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|+|+||+||++..+..+++++|++++.++.+++..+++++++++++++++|++||++|+|+|++|+||++||+|+|++
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~i 80 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLI 80 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCc
Confidence 46899999999999999999999999987667888888899999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhhhhccCCCC--
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGWTAAVGHVS-- 219 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~~A~~g~~~-- 219 (414)
|+++|+.+++++.++++.++. .+|+.+..++.++.++ .++|+++||+++++ +++|... ++++++||.+++|+++
T Consensus 81 s~~~a~~~~~~~~~~~~~~~~-~l~~~~~~l~~~~~~~-~~~Y~~~Kr~~~~~~~~~g~~~-~~~~~~g~~a~~g~~~~~ 157 (282)
T TIGR01475 81 SKKEARTMIILSLALFLSASY-FLNPLAFILSPLVLLV-LIIYPYTKRFTFLCHYVLGSTY-GLAPLAGWVAVIGTISFF 157 (282)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHhhHhccccccHHHHHHHH-HHHHHHHHHHHhCCccch
Confidence 999999999987766666554 6899998888888877 78999999999995 5566655 5899999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998 220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299 (414)
Q Consensus 220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~ 299 (414)
..++++++..++|+.+||++++++|+|||+++|+||+|+++|. +++.+++..+....+.+.+++...+..++.|++..+
T Consensus 158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~ 236 (282)
T TIGR01475 158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI-KAALKIASLSHVITFILLLLVGFYVGNGYIALLALI 236 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 7888999999999999999999999999999999999999974 555555444343333334333333323466776555
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHH-HHHHHHHHHHh
Q 014998 300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLP-VFMSGLLFHRL 344 (414)
Q Consensus 300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~-~~l~~~li~~~ 344 (414)
+.+ .++...+++.+.+++++|++.|+.++.++. +++++++++.+
T Consensus 237 ~~~-~~l~~~~~~~~~~~~~~~~~~ff~~~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 237 LIG-LILAYEHYIVDPGDQSKIQRAFFYANGFLSITFLIGVIIDVL 281 (282)
T ss_pred HHH-HHHHHHHHHcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 555 445566777888889999998887777664 45567777654
No 21
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.3e-45 Score=361.84 Aligned_cols=279 Identities=14% Similarity=0.115 Sum_probs=222.0
Q ss_pred HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc------CC---CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCC
Q 014998 62 HYGRCYWELSKARLSMLVVATSGTGFALGS------GS---TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRT 132 (414)
Q Consensus 62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~------~~---~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT 132 (414)
+++|.|.|++|.+|+++.+..++.|+++|. ++ .+++..+++..++.++++++||++||++|+|+|++|+||
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT 81 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRT 81 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCC
Confidence 358999999999999999999999999995 45 678988999999999999999999999999999999999
Q ss_pred CCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccchh-hhHhhhhcccccchhh
Q 014998 133 MRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVN-TWVGAIVGAIPPLLGW 211 (414)
Q Consensus 133 ~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~n-v~vG~~~Galp~l~G~ 211 (414)
++||+|+|++|++||+.+++++.+++++++ .++|++++.++++++++ .++||++||+|+++ +++|... ++++++||
T Consensus 82 ~~RPLpsG~is~~~A~~~~~~~~~~~~~l~-~~ln~l~~~l~~~~~~~-~~iY~~~KR~t~~~~~vLGl~~-~~~~l~~~ 158 (300)
T PRK12876 82 SSRVLPAKLLSINFSMLLLTLCSFLFLSLC-WLLNPLCFSLAVLSTLL-MIIYPYTKRVTFLCHWILGLVY-YLAILMNF 158 (300)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHHhHhcCCchhHHHHHHHH-HHHHHHHH
Confidence 999999999999999999986555555544 57899999999999998 58999999999996 5566655 68999999
Q ss_pred hhccCC-CCh----HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHH--HHHHHHHHHHHH
Q 014998 212 TAAVGH-VSL----NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALR--NCLYLVPLGYLA 284 (414)
Q Consensus 212 ~A~~g~-~~~----~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~--~~l~lv~ls~l~ 284 (414)
.|+.++ +++ ..+++....++|..++|++|++||+|||++.|+||+|+++| ++++..+.. +.+..+.+...+
T Consensus 159 ~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG--~~~a~~ia~~~~~l~~~~l~~~g 236 (300)
T PRK12876 159 FAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFG--EKKAIRIASANLIASAIAYLLIG 236 (300)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 998876 554 33445566677778999999999999999999999999997 444433222 223233333445
Q ss_pred HHhhchhHHHHHHHHHHHHHH--HHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 014998 285 YDWGVTSGWFCLESSLITLAI--SAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTD 346 (414)
Q Consensus 285 ~~~gl~~~~y~~~a~~~~~~i--l~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~ 346 (414)
+..+++ ++|++.+++....+ .+..+++.++++++.|.+.|+.|.+.+.+++++++....++
T Consensus 237 ~~~~l~-~~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~N~~ig~~~~~~~~~~~~~~ 299 (300)
T PRK12876 237 YFVSNK-KIFYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLGNIYLALSFFVNMIGLFLLR 299 (300)
T ss_pred HHhhcc-HHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHhcCHHHHHHHHHHHHHHccC
Confidence 666775 45444344322222 34444566667788899999999999999999988877654
No 22
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.3e-42 Score=340.63 Aligned_cols=274 Identities=20% Similarity=0.250 Sum_probs=239.9
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|.|+|++||+++....+++++|++++.+..+++..+++++++++++++++|++|||+|+|+|++|+ ++||+|+|++
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~--~~Rpl~sG~i 79 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINK--PERPIPSGRI 79 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhcccccccccC--CCCCcCCCcc
Confidence 47899999999999999999999999986555677778889999999999999999999999999998 7999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCCCh
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL 220 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~ 220 (414)
|+++|+.++.++.++|+++++ ++|+.++.++++++++ .++|+. +||++++ |+++|...|. .+++||.++++ ..
T Consensus 80 s~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~~~~~~~-~~~Ys~~lKr~~~~~~~~vg~~~G~-~~~~g~~~~~~--~~ 154 (279)
T PRK09573 80 SLKEAKIFSITLFIVGLILSI-FINIYAFLIALLNSIL-LYLYAKDLKKTGLIGNLIVAYLTGL-SFIFGGLAVFN--VL 154 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHH-HHHHHHHHHcc--ch
Confidence 999999999999999998775 6899999999998887 789996 9999987 8999999985 47888888776 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998 221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300 (414)
Q Consensus 221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~ 300 (414)
..++++...++|+.++++.+.++|+|+|+++|+||+|+++|. +++.+++..+.+.++.++++++..|..++.|++.+++
T Consensus 155 ~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 233 (279)
T PRK09573 155 RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGI-KKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVII 233 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999999999999999999999984 5666666667777777888888777556778877777
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 014998 301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344 (414)
Q Consensus 301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~ 344 (414)
.+..+++.++++++++++++|++.++.+..++.+-+++++++++
T Consensus 234 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~~~~~~~~ 277 (279)
T PRK09573 234 CDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLIAFLIGSL 277 (279)
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888999999999999999999999999988877777777764
No 23
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.3e-40 Score=325.84 Aligned_cols=269 Identities=20% Similarity=0.198 Sum_probs=226.0
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|+|+|++||+++.+..+++++|++++.+...+....++++++++++++++|++||++|+|+|++|+ ++||+|+|++
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~--~~Rpl~~G~i 80 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRINR--PDRPIPSGAV 80 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC--CCCCcCCCCc
Confidence 47899999999999999999999999986544344446788999999999999999999999999875 7999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCCCh
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSL 220 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~ 220 (414)
|++||+.++.++.++|+++++ ++|+.++.++++++++ .++|+. +||++++ |+.+|...|.. ++.|+.+.+.....
T Consensus 81 s~~~a~~~~~~l~~~g~~~~~-~l~~~~~~~~~~~~~~-~~~Yt~~lK~~~~~g~~~vg~~~g~~-~~~g~~~~~~~~~~ 157 (276)
T PRK12882 81 SPRGALAFSILLFAAGVALAF-LLPPLCLAIALFNSLL-LVLYAETLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLL 157 (276)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHHHhcccchhHHHHHHHHHHH-HHHHHHHhcccchH
Confidence 999999999999999998875 6899999999888887 789997 9999877 89999988854 56666665543445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998 221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300 (414)
Q Consensus 221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~ 300 (414)
..+++++..++|+..+|+.++++|+|||+++|+||+|++.|. +++.+.+..+.+..+.++++++..+..++.|++.+++
T Consensus 158 ~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~-~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 236 (276)
T PRK12882 158 ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGV-RKALYVAAAFLLVAVAASPLPYLLSTFGLWYLVLVAP 236 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 667788888999999999999999999999999999999984 5666665556565666667666555555677777777
Q ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHH
Q 014998 301 ITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMS 337 (414)
Q Consensus 301 ~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~ 337 (414)
.++.+++..++..+++++++|++.|+.+.+.+.+.+.
T Consensus 237 ~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~~ 273 (276)
T PRK12882 237 ADLVMLAAAYRSLKKTDPTASQKLLKYGMFLALAAFI 273 (276)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888889889999999999999998776654
No 24
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=332.74 Aligned_cols=292 Identities=18% Similarity=0.164 Sum_probs=242.2
Q ss_pred CCCCCChhhHhHHhHHHHHhHhh---hhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 014998 50 TGAAADPFSLIRHYGRCYWELSK---ARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEIS 124 (414)
Q Consensus 50 ~~~~~~~~~~~~~~lk~yl~L~R---P~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~e 124 (414)
.++..+.....+++++.|.||+| |..+++..+|+.++.+++.+ ..++...+.++.+|.++++++||+|||.+|+|
T Consensus 50 v~ssss~~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p~~~mL~LFG~GAllMRgAGCtINDlwDkd 129 (353)
T KOG1381|consen 50 VPSSSSLVASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLPSIKMLALFGVGALLMRGAGCTINDLWDKD 129 (353)
T ss_pred cCCchhhhhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccchhHHHHHhcccHHHhccCCceehhhhhhh
Confidence 44445555556778999999985 88999999999999999874 34677778889999999999999999999999
Q ss_pred ccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhc
Q 014998 125 NDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVG 203 (414)
Q Consensus 125 iD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~G 203 (414)
+|++++||+.|||++|++|+++|+.|..+...+|+.++. ++|+.+..++...+.+ ++.||.+||+|++ ++++|..++
T Consensus 130 lD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLl-qLn~ysi~lg~~sl~~-v~~ypl~kr~TY~pq~vLgltfn 207 (353)
T KOG1381|consen 130 LDAKVERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILL-QLNWYSIALGASSLAL-VITYPLMKRFTYWPQLVLGLTFN 207 (353)
T ss_pred hhhhHhhhcccccccCCcchhHHHHHHHHHHHHhHHHHH-hccHHHHHhccccccc-EEEeehhhhcchhHHHHHhhhcc
Confidence 999999999999999999999999999999999999885 8999999999998888 8899999999999 588999885
Q ss_pred ccccchhhhhccCCCChHH-HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHHH
Q 014998 204 AIPPLLGWTAAVGHVSLNG-MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPLG 281 (414)
Q Consensus 204 alp~l~G~~A~~g~~~~~~-~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~ls 281 (414)
++.+.||.|..|...+.. +.+++...+|++.+|++|||||++||.++|+|+.+.++| .+|+.+...+. ..+..++
T Consensus 208 -wGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG--~nTK~wl~gf~a~~ia~La 284 (353)
T KOG1381|consen 208 -WGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFG--DNTKPWLSGFGAAQIASLA 284 (353)
T ss_pred -hhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcC--CCCchHHhhhhHHHHHHHH
Confidence 999999999999887643 558888899999999999999999999999999999986 67766644433 3344455
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Q 014998 282 YLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQ 348 (414)
Q Consensus 282 ~l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~~~~~~ 348 (414)
..+...|.+ +.||.. +.....-+.....-++.+++++|.|.|+.|.+.+.+++.++.++.+++..
T Consensus 285 ~aG~~s~q~-~pyy~~-lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~i~~d~llk~~ 349 (353)
T KOG1381|consen 285 AAGIASDQT-WPYYAA-LGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSGIVLDTLLKSF 349 (353)
T ss_pred HhhhccCCC-chHHHH-HHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHHHHHHHHHHHh
Confidence 666677775 677753 32222222222222456789999999999999999999999999887743
No 25
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-40 Score=323.53 Aligned_cols=278 Identities=22% Similarity=0.217 Sum_probs=232.4
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG 140 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG 140 (414)
.+.++.++|+.||.++++...++.+|..++.++..++...++++++++++++++|++||++|+|+|++|+||++||+|+|
T Consensus 10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence 35567777788899999999999999999875445577888999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCcccch-hhhHhhhhcccccchhhhhccCCCC
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVS 219 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~ 219 (414)
++|+++|+.+.+++.++++++++ ++|+.++.++++++++ .+.|+.+||.+++ |+.+|...+ +++++||.++.+++.
T Consensus 90 ~vS~~~a~~~~~~~~~~~~~~a~-~l~~~~~~l~~~~~~l-~~~Y~~~Kr~~~~~~~~lg~~~~-~~~~~g~~a~~~~~~ 166 (289)
T COG0382 90 RVSVKEALLLAILLLLLGLALAL-LLNPLAFLLSLAALVL-ALAYPFLKRFTFLPQLVLGLAFG-LGALAGAAAVGGSLP 166 (289)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHhhcCCchHHHHHHHHHH-HHHHHHHHHHhCccc
Confidence 99999999999999999998885 7899999999888887 8899779999999 789999986 899999999999888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q 014998 220 LNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299 (414)
Q Consensus 220 ~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~ 299 (414)
...+++++..++|+.++|+.++++|+|+|++.|+||+|+.+|. +++..+...+.+..+.+.++++..+....+|++...
T Consensus 167 ~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~-~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (289)
T COG0382 167 LLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGI-KKALALALLLLLASALLVLLGLLAGLLGLIYLLGLL 245 (289)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 8999999999999999999999999999999999999999974 344444444445556666677777775445655444
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 300 ~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
.....+.+..+. .+.++++.+.+.|+.+...+.+++++.+++.
T Consensus 246 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (289)
T COG0382 246 VAALLLLYQILI-VDVRDPPACFALFDVNLLLGLLLFIGLILAV 288 (289)
T ss_pred HHHHHHHHHHHH-hcccChHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 445555554443 4445788899999999999998888877653
No 26
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.5e-39 Score=318.35 Aligned_cols=256 Identities=21% Similarity=0.234 Sum_probs=212.1
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG 140 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG 140 (414)
+.++++|+|++||+++....+++++|++++.+. .++..+++++++++++++++|++||++|+|+|++| | ++||+++|
T Consensus 1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~-~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r-~~Rpl~~G 77 (279)
T PRK12884 1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGG-LPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN-R-PDRPIPSG 77 (279)
T ss_pred ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc-C-CCCCCCCC
Confidence 357899999999999999999999999998654 33455678889999999999999999999999999 6 59999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccch-hhhHhhhhcccccchhhhhccCCC
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHV 218 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~ 218 (414)
++|+++|+.++.++.+++++++. .+|+.+..++++++++ ++.||. +||++++ |+++|...| +|++.||.++++..
T Consensus 78 ~is~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~-~~~Ys~~lK~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~ 154 (279)
T PRK12884 78 RISRREALLLAILLFILGLIAAY-LISPLAFLVVILVSVL-GILYNWKLKEYGLIGNLYVAFLTG-MTFIFGGIAVGELN 154 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHHHhhccccchhHHHHHHHHH-HHHHHHHHHhCCCc
Confidence 99999999999999999988775 6799998888888776 899998 8999976 688888764 88899988876543
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 014998 219 SLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLES 298 (414)
Q Consensus 219 ~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a 298 (414)
...++++...++|+.+|++.++++|+|||+++|+||+|+.+|. +++.+....+......++.+++..|..+++|++..
T Consensus 155 -~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 232 (279)
T PRK12884 155 -EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE-KIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPV 232 (279)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3778888889999999999999999999999999999999984 55555444444444445555666666567777666
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHH
Q 014998 299 SLITLAISAAAFSFYRDRTTQKARKM 324 (414)
Q Consensus 299 ~~~~~~il~~~~~~~~~~~~~~a~~~ 324 (414)
.+.+..+++..++++++++++++++.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 233 LVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 66667777787888888888888776
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=100.00 E-value=6.4e-37 Score=299.86 Aligned_cols=263 Identities=19% Similarity=0.241 Sum_probs=213.3
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
++|+|+|++||+++.++.++++.|++++.++.+++..+++.+++.++.++++|++||++|+|+|++|+ ++||+|+|++
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~--~~Rpl~sG~i 79 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKINR--PNRPLPRGAM 79 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhccccCC--CCCCCCCCcc
Confidence 46899999999999999999999999986554556666777889999999999999999999999864 7999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccc-hhhhHhhhhcccccchhhhhccCCCCh
Q 014998 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHP-VNTWVGAIVGAIPPLLGWTAAVGHVSL 220 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~-~nv~vG~~~Galp~l~G~~A~~g~~~~ 220 (414)
|+++|+.++.++.++|+++++ ..|+.++.+++++.++ .++|+. +||++. .|+++|.+.|++| +.|+.++ +.+++
T Consensus 80 s~~~a~~~~~~l~~~g~~l~~-~~~~~~~~~~~~~~~~-~~~Y~~~~k~~~~lg~~~vg~~~g~~~-~~g~~a~-~~~~~ 155 (277)
T PRK12883 80 SRKAALYYSLLLFAVGLALAY-LINIEAFLFALGAYVL-MFLYAWKLKPLPFIGNVVVALLTGATP-IYGAIAV-GRIGL 155 (277)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHhhcccCCcchhhHHHHHHHHHHH-HHHHHHh-ccccH
Confidence 999999999999999988765 6899999888888766 899998 999986 4899999998776 6777765 66777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q 014998 221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300 (414)
Q Consensus 221 ~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~ 300 (414)
..++. ...++|+.++++.+.++|+|+|+++|+||+|+.+|. +++.+++..+.+.++..+++++..+. ++.|+. ...
T Consensus 156 ~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~-~~a~~~~~~~~~~~~~~~~l~~~~~~-~~~y~~-~~~ 231 (277)
T PRK12883 156 AGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK-KRAAYIGAIFGVLTVIASFLPVKAGI-GLGYLP-III 231 (277)
T ss_pred HHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcH-HHHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHH-HHH
Confidence 76554 446889999998899999999999999999999984 55666655566556666677777776 455554 344
Q ss_pred HHHHHHHHHHHhhcCCcHHHH---HHHHHHhhHHHHHH
Q 014998 301 ITLAISAAAFSFYRDRTTQKA---RKMFHASLLYLPVF 335 (414)
Q Consensus 301 ~~~~il~~~~~~~~~~~~~~a---~~~F~~s~~~l~~~ 335 (414)
.++.+++.++++++.++++++ ++.|+.+...+.+-
T Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (277)
T PRK12883 232 VDAIILYAAYLVLRNPDRETAHKGQKLLKIAIFLAVIS 269 (277)
T ss_pred HHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHH
Confidence 677778888888887777665 67788777755443
No 28
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.4e-36 Score=296.31 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=204.1
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC-CC------
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM-KR------ 131 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~-~R------ 131 (414)
+.++++|++++||+...+...++.+|.++|. ++.+++..+++++++++++.+++|++|||+|+|+|++| +|
T Consensus 2 ~~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~ 81 (297)
T PRK12871 2 KETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYW 81 (297)
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccc
Confidence 3568999999999988877777778988873 34577766665667777777889999999999999853 44
Q ss_pred --CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCcccch--hhhHhhhhcc
Q 014998 132 --TMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANM---LTAGLAASNLILYAFVYTPLKQIHPV--NTWVGAIVGA 204 (414)
Q Consensus 132 --T~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~---~~~~l~l~~l~ly~~iYt~lKr~t~~--nv~vG~~~Ga 204 (414)
|++||+++|++|++||+.+++++.++|++++....++ ..+.+++.+.++ ++.|+..||.+.+ +..+|.+.++
T Consensus 82 ~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~-~~~Y~~~kr~~~~p~~~l~G~~~~~ 160 (297)
T PRK12871 82 RPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGI-EAFYQVKKRNQKYPVAQLLGRTDFT 160 (297)
T ss_pred cCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccHHHHHHHHHHH
Confidence 3799999999999999999999999998877533332 333444444444 5667766665444 3456765557
Q ss_pred cccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014998 205 IPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLA 284 (414)
Q Consensus 205 lp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~ 284 (414)
+++++||. ++|.++...++++...++|+.+||++++++|+|||+++|+||+|+.+|. +++.+++..+....+ +..++
T Consensus 161 ~~~~~g~~-~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~-~~t~~~i~~~~~l~~-l~~~~ 237 (297)
T PRK12871 161 LFPAAGYL-CYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM-KGTMYWVTGFTALHF-LAAIF 237 (297)
T ss_pred HHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech-HHHHHHHHHHHHHHH-HHHHH
Confidence 88888875 5788888999999999999999999999999999999999999999974 445544433333222 23334
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 285 YDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 285 ~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
+..+.+ +.++....++...+....+++++.++++.|.|.|+.=..|.......+++|.
T Consensus 238 ~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 295 (297)
T PRK12871 238 FLRELG-PIALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIILDF 295 (297)
T ss_pred HHHHhh-HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444554 3322222233334455566778889999999999988888877777776664
No 29
>PLN00012 chlorophyll synthetase; Provisional
Probab=100.00 E-value=9.2e-35 Score=295.23 Aligned_cols=262 Identities=17% Similarity=0.157 Sum_probs=204.2
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHH------HHHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLA------GLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM 133 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~------~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~ 133 (414)
-++++|.|+|++||+++...++++++|++.. + .+++. .++++++++.++++++|++|||+|+|+|++|+ +
T Consensus 81 ~~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g-~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~--~ 156 (375)
T PLN00012 81 ETDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-G-NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINE--P 156 (375)
T ss_pred chHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-C-CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCC--C
Confidence 4567899999999999999999999999853 3 34443 24667888899999999999999999999998 7
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhh
Q 014998 134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWK------ANMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIV 202 (414)
Q Consensus 134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~------~n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~ 202 (414)
+||+++|++|+++++.++.++.++++.++.++ .|+..+.++++++++ +++|| .+||++++ |+.+|+..
T Consensus 157 ~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l-~~~YS~pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 157 YRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLL-SYIYSAPPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-hhhhcCCchhhhHhccHhHHHHHHHH
Confidence 89999999999999997776666666555432 256678888888887 88998 38999987 88999999
Q ss_pred cccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHH
Q 014998 203 GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGY 282 (414)
Q Consensus 203 Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~ 282 (414)
+++|+.+|+ +++|.+++..+++++..++|....++.+.++|+|+|+++|+||+|+++|. +++++. ..+.+.+..++.
T Consensus 236 ~~lp~~~g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~-~~a~~l-~~~~l~l~~l~~ 312 (375)
T PLN00012 236 ISLPWWAGQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV-ETAKWI-CVGSIDITQLSV 312 (375)
T ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeech-HHHHHH-HHHHHHHHHHHH
Confidence 888888887 66788999999999999999999999999999999999999999999984 444444 345566666666
Q ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Q 014998 283 LAYDWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLL 330 (414)
Q Consensus 283 l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~ 330 (414)
+++..+.+.+.|.....++.+..++..++... +|+++....|+.+..
T Consensus 313 ~~~l~~~~~~~y~~~~~~l~l~~l~~~~~~~~-~~p~~~~~~~~~~a~ 359 (375)
T PLN00012 313 AGYLLAIGKPYYALALLGLIIPQIFFQFKYFL-PDPVKNDVKYQASAQ 359 (375)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 67776665444433344444555555555433 377777777775543
No 30
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=100.00 E-value=2.1e-34 Score=287.22 Aligned_cols=276 Identities=17% Similarity=0.101 Sum_probs=204.9
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAG------LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM 133 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~------lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~ 133 (414)
.+++++.|++++||+++...+++.+.|++.+. .+++.. ++.+++++.+.++++|++|||+|+|+|++|+ +
T Consensus 23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~--~ 98 (314)
T PRK07566 23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSG--AFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINE--P 98 (314)
T ss_pred cchHHHHHHHHhCCcchHHHHHHHHHHHHHcC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCC--C
Confidence 46778999999999999999999888888653 233322 3446677888999999999999999999987 6
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhhcccccc
Q 014998 134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIVGAIPPL 208 (414)
Q Consensus 134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~Galp~l 208 (414)
+||+++|++|+++|+.++.++.++|++++. .+|+.+..++++++++ .++|| ++||++++ |+++|..+|++|++
T Consensus 99 ~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~-~l~~~~~~l~l~~~~~-~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~ 176 (314)
T PRK07566 99 YRPIPSGAISLRWVLYLIAVLTVLGLAVAY-LLGPWVFLAALLGLFL-AWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWW 176 (314)
T ss_pred CCCCCCceeCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHH-HHHhcCCccccccccchhhHHHHHHHHHHHHH
Confidence 899999999999999999999999988775 6799898898888887 88999 49999976 89999999889999
Q ss_pred hhhhhccC-CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 014998 209 LGWTAAVG-HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDW 287 (414)
Q Consensus 209 ~G~~A~~g-~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~ 287 (414)
+|+.+.++ .+++..+++++..++|....+..++++|+|+|+++|+||+|+++|. +++.......+.+..+..+.+..
T Consensus 177 ~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~--~~a~~l~~~l~~~~~~~~~~~~~ 254 (314)
T PRK07566 177 AGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGE--KNAARIACVVIDLFQLAVIALLL 254 (314)
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988874 6788888888888899999999999999999999999999999974 43333222222222222222222
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 288 GVTSGWFCLESSLITLAISAAAFSFYRD-RTTQKARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 288 gl~~~~y~~~a~~~~~~il~~~~~~~~~-~~~~~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
.....+|.....+..+.......+..++ ++.+.+.+.|..+.+...+++.++++..
T Consensus 255 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 311 (314)
T PRK07566 255 AWGQPLYAAIVGLLLIPQITLQDRLLRDPLERDVWYNASAQPFYVLGMLVTALAIRH 311 (314)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHhhChhhcChhhhhhhhHHHHHHHHHHHHHhcc
Confidence 2211233222222333333344444443 3345566777777777777777776654
No 31
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=1.9e-31 Score=262.90 Aligned_cols=205 Identities=13% Similarity=0.045 Sum_probs=175.0
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccC
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGSG-STIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPS 139 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~~-~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLps 139 (414)
++|.|+|++||+++....+++++|.+++.. +.+++..+++++++++++++++|.+|||+|+ |+|+++.|+++||+++
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~ 81 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGR 81 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccC
Confidence 468999999999999999999999999853 4578888889999999999999999999998 7899999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhhh
Q 014998 140 GRISVRHAVTWASSVGVAGTALLAW---KANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGWT 212 (414)
Q Consensus 140 G~IS~~~Al~~~~~l~~~gl~ll~~---~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~~ 212 (414)
|++|+++++.++.++.++++++... ..++..+.++++++++ .+.||. +|++...++.+|..+|.+.++++++
T Consensus 82 G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~-~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~ 160 (293)
T PRK06080 82 GGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAA-AILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYY 160 (293)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-hhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777766544332 2477778888888777 789986 3444455889999999888888888
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998 213 AAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV 269 (414)
Q Consensus 213 A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~ 269 (414)
..++.+++..+++++..++|+..+++.++++|+|+|+++|+||+|+++|. +++.+.
T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~-~~a~~~ 216 (293)
T PRK06080 161 LQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGD-KNARRL 216 (293)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECc-HhHHHH
Confidence 88888999999999999999999999999999999999999999999984 443333
No 32
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1.9e-31 Score=267.38 Aligned_cols=248 Identities=21% Similarity=0.242 Sum_probs=177.9
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCC-CcHHH----HHHHHHHHHHHHHHHHHhhccccccccccCCCCCC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGST-IDLAG----LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMR 134 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~-~~~~~----lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~ 134 (414)
+++++|+|+|++||++++ .++++++|.++|.++. +++.. +..+++++.++++++|++|||+|+|+|++|+||
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rt-- 84 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPT-- 84 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCC--
Confidence 667789999999998777 6667778888886432 23221 223345556667889999999999999999976
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH-------HH-HHHHHHHHHHHHHHhc---C-CCcccch-hhhHhhh
Q 014998 135 RPLPSGRISVRHAVTWASSVGVAGTALLAWKANM-------LT-AGLAASNLILYAFVYT---P-LKQIHPV-NTWVGAI 201 (414)
Q Consensus 135 RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~-------~~-~~l~l~~l~ly~~iYt---~-lKr~t~~-nv~vG~~ 201 (414)
||+++|++|+++|+.+++++.+++++++. +++. .. +..+++++++ +++|| + +||.++. +..+|..
T Consensus 85 Rpl~~G~is~~~al~~~~~l~~la~~lg~-~L~~~~~~~~~~~il~~~~~~l~l-~~~YS~~P~~lKr~~~~g~~~vGl~ 162 (331)
T PRK12392 85 RPIPSGRLSEKEALWNSIIVLLLAIGLGV-WLGLHIGGERGMVIISSILAGLFV-AYIYSAPPLKLKKNILTSAPAVGFS 162 (331)
T ss_pred CCCCcCCcCHHHHHHHHHHHHHHHHHHHH-HHHhccccchhHHHHHHHHHHHHH-hhhhcCCchhhhccchhHHHHHHHH
Confidence 99999999999999999999998887765 3332 11 2334555666 78996 3 8998765 6788998
Q ss_pred hcccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHH-HHHHHH
Q 014998 202 VGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNC-LYLVPL 280 (414)
Q Consensus 202 ~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~-l~lv~l 280 (414)
++ +.+++++.+..+++++..+++++..++|+.+.++.++++|+|+|++.|+||+|+.+|. +++.++...+. +..+.+
T Consensus 163 ~~-~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~-~~a~~i~~~~~~~~~~~~ 240 (331)
T PRK12392 163 YG-FITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGA-KNTFLVSFIIIDLVFAVF 240 (331)
T ss_pred HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcH-hhHHHHHHHHHHHHHHHH
Confidence 87 5556677777788888888889999999999999999999999999999999999984 44444433333 233333
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 014998 281 GYLAYDWGVTSGWFCLESSLITLAISAAAFSFYRDR 316 (414)
Q Consensus 281 s~l~~~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~ 316 (414)
...++.++.+ +.|++..+++ ...++...+++++|
T Consensus 241 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~q~~l~r~p 274 (331)
T PRK12392 241 AWLAWSWGFT-VLMYFILVGL-VLNIVIQIQLYRDP 274 (331)
T ss_pred HHHHHHhccc-HHHHHHHHHH-HHHHHHHHHHHhCh
Confidence 3445666764 4444333322 23334445555554
No 33
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=100.00 E-value=1.3e-30 Score=259.07 Aligned_cols=197 Identities=19% Similarity=0.123 Sum_probs=168.3
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHH------HHHHHHHHHHHHHHHHHhhccccccccccCCCCC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAG------LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTM 133 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~------lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~ 133 (414)
.+.++|.|+|++||+++..+++++++|++.+. .+++.. +++++++++++++++|++|||+|+|+|++|+ +
T Consensus 12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~--~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~--~ 87 (306)
T TIGR02056 12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAASG--NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINE--P 87 (306)
T ss_pred chhHHHHHHHHcChHhhHHHHHHHHHHHHHcC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCC--C
Confidence 56678999999999999999999999988642 344432 3455678899999999999999999999998 4
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHhc----CCCcccch-hhhHhhhh
Q 014998 134 RRPLPSGRISVRHAVTWASSVGVAGTALLAWKA------NMLTAGLAASNLILYAFVYT----PLKQIHPV-NTWVGAIV 202 (414)
Q Consensus 134 ~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~------n~~~~~l~l~~l~ly~~iYt----~lKr~t~~-nv~vG~~~ 202 (414)
+||+++|++|+++++.+++++.+++++++.... |+..+.++++++++ +++|| ++||++++ ++.+|+..
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~-~~~Yt~gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFI-AFIYSAPPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHHHcCChhhhhhcccHHHHHHHHHH
Confidence 899999999999999999988888887765321 36677888888887 89999 38999866 88899988
Q ss_pred cccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 203 GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 203 Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
+.+|+.+|+ +++|++++..+++++..++|....++.+.++|+|+|+++|+||+|+++|.
T Consensus 167 ~~~~~~~~~-a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~ 225 (306)
T TIGR02056 167 IALPWWAGH-ALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGI 225 (306)
T ss_pred HHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcCh
Confidence 878877776 55788999999999999999999999999999999999999999999974
No 34
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.97 E-value=2.6e-30 Score=253.91 Aligned_cols=199 Identities=18% Similarity=0.137 Sum_probs=165.6
Q ss_pred HHHHhHhhhhHHHHHHHHHHHHHHHhc--CCC-CcHHHHHH-HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCC
Q 014998 65 RCYWELSKARLSMLVVATSGTGFALGS--GST-IDLAGLCW-TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSG 140 (414)
Q Consensus 65 k~yl~L~RP~~~~~~~~~~~~G~llA~--~~~-~~~~~lll-~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG 140 (414)
|+|+|++||+++...++++++|.+++. .+. .++...++ +++++.+.++++|++|||+|+|+|++|+ ++||+++|
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~--~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINE--PQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCC--CCCCCCCC
Confidence 468999999999999999999998873 222 45554444 6779999999999999999999999998 79999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccch-hhhHhhhhcccccchhhhhcc
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPV-NTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~-nv~vG~~~Galp~l~G~~A~~ 215 (414)
++|++++..++.++..++++++....++....++++++++ ++.||. +||++++ ++.+|...+.+|+..|+.+.
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~- 156 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVL-AVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIF- 156 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHh-
Confidence 9999999999999999998887643344336777777777 889994 9999866 78888887778888887665
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHH
Q 014998 216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTAL 268 (414)
Q Consensus 216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~ 268 (414)
+.+++..+++++...+|....+..+.++|+|+|+++|+||+|+++|. +++.+
T Consensus 157 ~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~-~~a~~ 208 (283)
T TIGR01476 157 APLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGV-KRAAI 208 (283)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcH-HHHHH
Confidence 56788888888888899999999999999999999999999999984 44433
No 35
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.97 E-value=1.8e-29 Score=251.09 Aligned_cols=203 Identities=16% Similarity=0.125 Sum_probs=163.7
Q ss_pred ChhhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHH----hhccccccccc
Q 014998 55 DPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSGST---IDLAGLCWTCTGTMMVAASANS----LNQLFEISNDA 127 (414)
Q Consensus 55 ~~~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~---~~~~~lll~~lg~~l~~aa~~~----iND~~D~eiD~ 127 (414)
.+.+..++.+++|+|++|||+.+...++...+++++.... ++.. .++..+++++.+.++|+ +||++|+|+|+
T Consensus 4 ~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~-~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ 82 (308)
T PRK12887 4 NPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA-NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDR 82 (308)
T ss_pred chhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh
Confidence 3455567788999999999999999999988887764222 2222 45677788888888898 99999999999
Q ss_pred cCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccchh-hhHhhhh
Q 014998 128 KMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPVN-TWVGAIV 202 (414)
Q Consensus 128 ~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~n-v~vG~~~ 202 (414)
+|+ |+||+++|++|+++++.+.++++++|+++++ +.|+..+.+++++.++ ++.||. +||++.+. +.+....
T Consensus 83 ink--p~rPiasG~ls~~~a~~~~~~~~~lal~la~-~~~~~~~~~~~~~~~l-g~~Ys~pP~rlKr~~~~~~~~i~~~~ 158 (308)
T PRK12887 83 INK--PHLPLAAGEFSRRQGQRIVIITGILALILAA-LLGPWLLITVGISLLI-GTAYSLPPIRLKRFPLLAALCIFTVR 158 (308)
T ss_pred cCC--CCCCcCCcccCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH-HHHHcCCchhhcccchhHHHHHHHHH
Confidence 998 8999999999999999999999999998875 6899988888888888 899994 99999884 5444444
Q ss_pred cccccch---hhhh---ccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 203 GAIPPLL---GWTA---AVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 203 Galp~l~---G~~A---~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
|.+..++ .+.+ ..+.++...+++++..++|+.+.++.++++|+|+|++.|+||+|+.+|.
T Consensus 159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~ 224 (308)
T PRK12887 159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGK 224 (308)
T ss_pred HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhH
Confidence 4222222 1111 2234667778888889999999999999999999999999999999973
No 36
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.7e-28 Score=242.93 Aligned_cols=199 Identities=14% Similarity=0.075 Sum_probs=171.7
Q ss_pred HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhcccc--ccccccCCCC--CCC
Q 014998 62 HYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFE--ISNDAKMKRT--MRR 135 (414)
Q Consensus 62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D--~eiD~~~~RT--~~R 135 (414)
+++|.|++.+||++..+...+++.|..++. .+.+++...++++++++++++++|++|||+| +|.|++ +|| ++|
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~-~rt~~~~r 80 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH-ETTGYRQH 80 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc-cccCCCCC
Confidence 478999999999999999999999998885 2578999999999999999999999999999 566665 677 789
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHhc---C-CCcccchhhhHhhhhcccccc
Q 014998 136 PLPSGRISVRHAVTWASSVGVAGTALLAW---KANMLTAGLAASNLILYAFVYT---P-LKQIHPVNTWVGAIVGAIPPL 208 (414)
Q Consensus 136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~---~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~nv~vG~~~Galp~l 208 (414)
|+++|++|++|++.++.++.++++.+... ..++....+++++++. ++.|| . +|++...++.++..+|.+.++
T Consensus 81 ~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~-~~~Yt~~P~~lky~glGe~~v~~~~g~~~vl 159 (296)
T PRK05951 81 PIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFL-WTCYMGPPFFLKYRWLGEHLVFYAWSHMLVM 159 (296)
T ss_pred ccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHcCCCcccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999998877766544322 3466778888888887 88995 2 777777799999999988889
Q ss_pred hhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 209 LGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 209 ~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
+.++..++.+++..++......+|+..-...+.++|+|+|+++|+||+|+++|.
T Consensus 160 g~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~ 213 (296)
T PRK05951 160 GLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGR 213 (296)
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcH
Confidence 998999999999988888888888888888899999999999999999999974
No 37
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=227.48 Aligned_cols=274 Identities=14% Similarity=0.043 Sum_probs=190.0
Q ss_pred HhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 62 HYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+.++.++++.|+.+.......+..++... ...++......++++++.++++|++||++|+|+|++|+ ++||.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~--~~R~~~s~~ 77 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMAS--LLLGLPISWLLLLITFLIAAAVYIINYLTDLEEDIINK--PERVVFSET 77 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHcChhHHHHHHHHHHHHHHHHHhhhhcCCchhhcCC--CchHHHHHH
Confidence 34689999999999888777665553221 11232335567788899999999999999999999998 478888555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-----CCcccch-hhhHhhhhcccccchhhhhcc
Q 014998 142 ISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-----LKQIHPV-NTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 142 IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-----lKr~t~~-nv~vG~~~Galp~l~G~~A~~ 215 (414)
...+.++.+..+...+|+.++....|+..+.+++++.++ ++.|+. +||.+.. |+.+|...|..++++++++.+
T Consensus 78 ~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~ 156 (285)
T PRK12872 78 KAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLIL-GILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQ 156 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444444444443333488888888888877 889984 6776655 899999999888888888877
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhchhHHHH
Q 014998 216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFC 295 (414)
Q Consensus 216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl~~~~y~ 295 (414)
+.+++..++.+...+++....+..+.++|+|+|+++|+||+|+.+|. +++.+......+......+++...|.. ++++
T Consensus 157 ~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~-~~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 234 (285)
T PRK12872 157 LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK-ERTLKFLLILNLLFLILLILGVYTGLL-PLLL 234 (285)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch-HHHHHHHHHHHHHHHHHHHHHHHHhHh-hHHH
Confidence 76777777777777788888888888999999999999999999985 556555444444444445555556653 3444
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhHHHHHHHHHHHHH
Q 014998 296 LESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH 342 (414)
Q Consensus 296 ~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~~l~~~l~~~li~ 342 (414)
+..++......+...++.+.+++++..+....-..+..+-.+.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 281 (285)
T PRK12872 235 LVLLLLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLISMLLG 281 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHHHHHHH
Confidence 44444445555566777777777766655554444443333334433
No 38
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=1.6e-26 Score=221.00 Aligned_cols=183 Identities=21% Similarity=0.228 Sum_probs=152.6
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q 014998 77 MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGV 156 (414)
Q Consensus 77 ~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~ 156 (414)
.+.+.+++.|..++.++..++.......+++++.+.++|.+||+.|+|.|++++|+++||+++|++|++++..++.++.+
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~ 81 (257)
T PF01040_consen 2 PLSFLPVLAGLALASGGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLL 81 (257)
T ss_pred hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHH
Confidence 34566777886666666677877778888888999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---CCCcccch-hhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHH
Q 014998 157 AGTALLAWKANMLTAGLAASNLILYAFVYT---PLKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFW 232 (414)
Q Consensus 157 ~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw 232 (414)
+++++++ ..|+..+.+.++..+. .+.|+ .+||++.+ ++++|...+ +++..|+.+.+++.+...++++...+++
T Consensus 82 l~l~l~~-~~~~~~~~~~~~~~~~-~~~Ys~~~~lk~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T PF01040_consen 82 LGLLLAL-LLGPWFLLILLLGFLL-GLLYSPPLRLKRRPLWGELVVALVFG-LLILLGAYAAGGDPPPPPFLLAIFFFLL 158 (257)
T ss_pred HHHHHHH-hcCchhHHHHHHHHHH-HHHHhhhhhhcceeccchhhHHHhhh-HhhhhhhhhcCCcccHHHHHHHHHHHHH
Confidence 8887774 6788888888887777 68999 59999986 678888765 7788888888877777777766665666
Q ss_pred HHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 233 QIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 233 ~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
.........++|.|+|+++|+||+|+.+|.
T Consensus 159 ~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 159 IFAIMFFNDIRDIEGDRKAGRRTLPVLLGE 188 (257)
T ss_pred HHHHHHHHHhhhHHHHHHcCCcchHHHHHH
Confidence 666555668999999999999999999974
No 39
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=1.1e-25 Score=221.18 Aligned_cols=250 Identities=20% Similarity=0.072 Sum_probs=171.4
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCcc
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGSGSTIDL--AGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~--~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLp 138 (414)
...++.+++++||..|+..+.+..+|+..+. ..+++ ..+.++++..+..+...|.+|||+|+|+|++|+|+ ||++
T Consensus 9 ~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g-~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~--~~i~ 85 (292)
T PRK13595 9 LLPLRRLLLISRPALWVNTVGTLVTGVWLTG-HLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK--GGWQ 85 (292)
T ss_pred hhHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC--CCCC
Confidence 3455778999999999999999999997764 35676 45556667777788899999999999999999965 7888
Q ss_pred CCCCCHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHhc---C-CCcccch-hhhHhhhhcccccch
Q 014998 139 SGRISVRHAVTWASSVGVA----GTALLAWKANMLTAGLAASNLILYAFVYT---P-LKQIHPV-NTWVGAIVGAIPPLL 209 (414)
Q Consensus 139 sG~IS~~~Al~~~~~l~~~----gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~-nv~vG~~~Galp~l~ 209 (414)
+|++|++++..+...+.++ ++.+. ...|+.+..+.+++.++ .+.|| . +|+++++ ++.. ..+| +|...
T Consensus 86 ~G~is~~~~~~~~~~~~~~~~~~~l~la-~~l~~~~~~l~~v~~~l-~~~YS~pPlRlK~rp~l~~l~~-~~~g-~p~~~ 161 (292)
T PRK13595 86 GARLSPGEVRPLLRAVLLLNAPFLLYLA-LLLPPAATLLLLLYAAL-FVGYSLPPLRFKARPFLDGLSN-AAYA-LPLAL 161 (292)
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHH-HHHHccCccchhcCcchhHHHH-HHHH-HHHHH
Confidence 9999999999876554444 33333 36788888888888877 88998 3 7777766 4433 3343 44444
Q ss_pred hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 014998 210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGV 289 (414)
Q Consensus 210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~~gl 289 (414)
| .++.|.... +...+..++|.+++|..++++|+|+||+.|+||+|+++|. +++.+.+....+..+ ..+.. .
T Consensus 162 ~-~~~~g~~~~--~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~-r~a~~~a~~~~~~a~-~~~~~--~-- 232 (292)
T PRK13595 162 P-ALALGAPVP--WPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGV-RGTALYALAWFLLAG-ALLWP--V-- 232 (292)
T ss_pred H-HHHcCCcch--HHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCc-HhHHHHHHHHHHHHH-HHHHH--h--
Confidence 4 556665432 2333566789999999999999999999999999999984 555544333222111 11111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Q 014998 290 TSGWFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLL 330 (414)
Q Consensus 290 ~~~~y~~~a~~~~~~il~~~~~~~~~~~~~~a~~~F~~s~~ 330 (414)
++...+. +.+.......+++.+++.|++.+..+.+.+
T Consensus 233 -~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (292)
T PRK13595 233 -SRLTALA---LWLICGGMALALWRRPTPETAHRLYPLSIV 269 (292)
T ss_pred -cchHHHH---HHHHHHHHHHHHhcCCCHHHHhccchHHHH
Confidence 1222211 111112234456688888888777555433
No 40
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.95 E-value=2.8e-25 Score=221.89 Aligned_cols=199 Identities=9% Similarity=0.062 Sum_probs=165.5
Q ss_pred hHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccC--CCCCCCCcc
Q 014998 63 YGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM--KRTMRRPLP 138 (414)
Q Consensus 63 ~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~--~RT~~RPLp 138 (414)
.+|.|++++||++...++.+++.|..+|. .+.+++...+++++++++.++++|.+|||+|.+.|+.+ .++++|+++
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~ 81 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIG 81 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhc
Confidence 46889999999999999999999999985 34678888889999999999999999999997554444 345789999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhh
Q 014998 139 SGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGW 211 (414)
Q Consensus 139 sG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~ 211 (414)
+|.+|+++++..+.++.+++.++.. ...|+....+++++++. ++.||. +||+...++.+|..+|.+.+++++
T Consensus 82 ~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~-~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~ 160 (317)
T PRK13387 82 QHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAI-GILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAV 160 (317)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH-hhhhcCCCcccccCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887777665322 35678888889998888 889983 899988899999999988888888
Q ss_pred hhccCCCChHHHH--------------------HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 212 TAAVGHVSLNGMI--------------------LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 212 ~A~~g~~~~~~~l--------------------L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
+..++.+++..++ .++...+.+..-...+.++|+|+|+++|.||+|+++|.
T Consensus 161 yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~ 231 (317)
T PRK13387 161 YINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR 231 (317)
T ss_pred HHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence 8888877766554 56666676666667788999999999999999999973
No 41
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=1.1e-24 Score=213.56 Aligned_cols=217 Identities=11% Similarity=0.016 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 014998 97 LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAAS 176 (414)
Q Consensus 97 ~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~ 176 (414)
..+.++.++++++..+++|++||++|+|+|++|+ |+||||||++|+++|..++.++.++++.+. ..+ ...+.
T Consensus 45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~--P~RPLPsG~VS~~~A~~~si~L~~~~l~L~-----~l~-~i~i~ 116 (299)
T PRK13592 45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLF--PHRALPSGRVKKKDLAIALSFIVAVSVLLN-----VLF-MNNVG 116 (299)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcC--CCCCCCcCCCCHHHHHHHHHHHHHHHHHHH-----HHH-HHHHH
Confidence 3456677788899999999999999999999998 899999999999999999988866655444 333 22333
Q ss_pred HHHHHHHHh-----cC-CCcccch-hhhHhhhhcccccch---------hhhhccCCCC--hHHHHHHHHHHHHHHHHHH
Q 014998 177 NLILYAFVY-----TP-LKQIHPV-NTWVGAIVGAIPPLL---------GWTAAVGHVS--LNGMILPAALYFWQIPHFM 238 (414)
Q Consensus 177 ~l~ly~~iY-----t~-lKr~t~~-nv~vG~~~Galp~l~---------G~~A~~g~~~--~~~~lL~~~~~lw~~~h~~ 238 (414)
+.+. .++| .. +||.+.. |+.++.+.| .+++. |..+ .|... ...+++++..++-+.+.+.
T Consensus 117 ~~~i-~~lY~~lm~a~~~K~~~l~gNl~Va~ltg-~~f~~g~~~~~~~fg~~~-~g~~~~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 117 WFLF-LYIYGTLMSFWFFKRDKIQNSLPLALVTH-NPVMMILNLYTISFVCYK-YNLPLLSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHH-HHHHHHHHHHHHHcccCCCcchhhhhhcc-chhhhchhhhhhhhhhhh-cccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3333 4456 76 9998877 899999997 44422 2112 22222 2235677788888999999
Q ss_pred HHHhhchHHHHHCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhchhHHHHHHHHHHHHHHHHHHHHhhcCCc
Q 014998 239 ALAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYD-WGVTSGWFCLESSLITLAISAAAFSFYRDRT 317 (414)
Q Consensus 239 ~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~~~~~l~lv~ls~l~~~-~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~ 317 (414)
...++| |||++ |++|+|+.+|. +++.+.+....+..+.++++++. .|.-++ ...++.++++++..+++.++++
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~-kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~~~lk~p~ 267 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGY-KKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFEQFIKSPT 267 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccc-hhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 88886 59999999985 56666655555656667788876 554333 2234556788889999999887
Q ss_pred H----HHHHHHHHHhhH
Q 014998 318 T----QKARKMFHASLL 330 (414)
Q Consensus 318 ~----~~a~~~F~~s~~ 330 (414)
+ ++.++..|.+..
T Consensus 268 ~~~~~~~~~~~~ki~~~ 284 (299)
T PRK13592 268 RFNIRERVERYTYITET 284 (299)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 6 567777666554
No 42
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=1.2e-23 Score=206.70 Aligned_cols=189 Identities=15% Similarity=0.085 Sum_probs=140.8
Q ss_pred HHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH-HHhhccccccccccCCCCCCCCccCCCCC
Q 014998 65 RCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASA-NSLNQLFEISNDAKMKRTMRRPLPSGRIS 143 (414)
Q Consensus 65 k~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~-~~iND~~D~eiD~~~~RT~~RPLpsG~IS 143 (414)
+.+++++||+.|+...+|...|+++| ++.+++ .++++.+.....+..+ |.+|||+|+|.|+.|+||..|. |.+|
T Consensus 2 ~~~~~~~rP~~wi~~a~pf~~g~~la-~~~~~~-~~l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~---g~i~ 76 (282)
T PRK13105 2 RQLLLSSRPISWINTAYPFAAAYLLA-GGEIDW-LFVVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVE---GAVL 76 (282)
T ss_pred hhHHHhcccHHHhccHHHHHHHHHHH-CCCCCh-HHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCC---CccC
Confidence 67899999999999999999999999 455666 4444444433333333 4669999999999999987764 8899
Q ss_pred HHHH----HHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC----CCcccchh-h-hHhhhhcccccchhhh
Q 014998 144 VRHA----VTWASSVGV-AGTALLAWKANMLTAGLAASNLILYAFVYTP----LKQIHPVN-T-WVGAIVGAIPPLLGWT 212 (414)
Q Consensus 144 ~~~A----l~~~~~l~~-~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~n-v-~vG~~~Galp~l~G~~ 212 (414)
++|+ +.+..+..+ .++.+. ...|+.++.++.++++. .+.||. +|++...+ . +....+| . .+.|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~l~-~~~~~~~~~l~~~ai~~-~~~YS~~p~rlk~~gl~d~~t~~~~f~~-~-~v~G~~ 152 (282)
T PRK13105 77 DRAMHRTTLWASVVTTVPFLVVLL-AVGSWASGLVLAVSVFA-VVAYSAPGLRFKERPFLDSLTSSTHFVS-P-ALYGLV 152 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH-HHHhcCCCccccccchHHHHHHHHHHHH-H-HHHHHH
Confidence 9987 333333232 233232 23478888899888887 889994 77777764 3 4444443 2 444445
Q ss_pred hccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 213 AAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 213 A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
..++.+++..++++..+++|..+.+..++++|.|+|+++|+||+|+++|.
T Consensus 153 ~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~ 202 (282)
T PRK13105 153 LAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGA 202 (282)
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcH
Confidence 55677788888888999999999999999999999999999999999973
No 43
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.93 E-value=7.2e-24 Score=209.51 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=127.7
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCc
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPL 137 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPL 137 (414)
.++++++|+|++||++|..+++... +.+++.. ....+...++++++.+++++++|++||++|+|+|++|+||++||+
T Consensus 7 ~~~~l~~~l~L~RP~~w~~nll~~~-~~~~a~~~~~~~~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPl 85 (295)
T PRK12324 7 PKNLLAGYLKLLRPKQWIKNLFVFA-APIFAGNLLNPGALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPI 85 (295)
T ss_pred hHHHHHHHHHHhCchHHHHHHHHHH-HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCC
Confidence 4567899999999999999887444 4455432 112344566777888889999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchh-hhHhhhhcccccchhhhhcc
Q 014998 138 PSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVN-TWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 138 psG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~n-v~vG~~~Galp~l~G~~A~~ 215 (414)
|+|++|+++|+.++.++.++|+++++ ++|+.++.+.+..+ ++.++||. +||++..+ +.++..++ ++++.|..+.+
T Consensus 86 asG~is~~~A~~~~~~l~~~~l~la~-~l~~~~~~~~~~~~-~~~~~Ys~~lK~~~~~d~l~va~~~~-lr~~~G~~a~~ 162 (295)
T PRK12324 86 ASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLVYL-VLNLAYSFKLKHQPVLDVFCIASGFV-LRAIAGGVAIG 162 (295)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHhhHHhcCCchhhHHHHHHHHH-HHHHHHHHHhC
Confidence 99999999999999999999998875 67988877755444 45899998 99999885 67777674 88888977765
Q ss_pred CCCChHHHHHH
Q 014998 216 GHVSLNGMILP 226 (414)
Q Consensus 216 g~~~~~~~lL~ 226 (414)
. +.+.|++.
T Consensus 163 ~--~~s~wll~ 171 (295)
T PRK12324 163 V--PLSPWLLL 171 (295)
T ss_pred C--CccHHHHH
Confidence 4 44555544
No 44
>PRK08238 hypothetical protein; Validated
Probab=99.93 E-value=3.7e-24 Score=224.31 Aligned_cols=187 Identities=17% Similarity=0.160 Sum_probs=142.4
Q ss_pred HhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCC-CCc-HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCC
Q 014998 59 LIRHYGRCYWELSKARLSMLVVATSGTGFALGSGS-TID-LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136 (414)
Q Consensus 59 ~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~-~~~-~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RP 136 (414)
..+.++++|++++||+++..+++. +++++++... .++ +..+++++++..++++++|++||++|+|+|++|+||++||
T Consensus 186 ~~~~~~~~~~~l~Rp~q~~kn~l~-~~p~l~a~~~~~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RP 264 (479)
T PRK08238 186 PRPARLRTWLKALRVHQWAKNLLV-FVPLLAAHQFGDLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRP 264 (479)
T ss_pred CCchHHHHHHHHhCCcHHHHHHHH-HHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCC
Confidence 345678999999999999999986 4577776431 222 4456778888899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCcccchh-hhHhhhhcccccchhhhhc
Q 014998 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP-LKQIHPVN-TWVGAIVGAIPPLLGWTAA 214 (414)
Q Consensus 137 LpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~-lKr~t~~n-v~vG~~~Galp~l~G~~A~ 214 (414)
+|||++|+++|+.++.+++++|+++++ ++|+.++.+.+. .+++.++||+ +||+++++ +++|+.+ ++++++|+++.
T Consensus 265 lasG~is~~~A~~~~~~l~~~~~~l~~-~l~~~~~~~~~~-~~~~~~~Ys~~lKr~~~~~~~~la~~~-~lr~~~G~~a~ 341 (479)
T PRK08238 265 FASGALPIPFGLAAAPLLLLAGLALAL-ALGPAFLLVLLA-YLALTLAYSLRLKRKVLVDVLTLAALY-TLRIIAGAAAI 341 (479)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHH-HHHHHHHhhHHhcCCccccchHHHHHH-HHHHHHHHHHh
Confidence 999999999999999999999998775 578855555444 4455899998 99999995 6667766 69999998875
Q ss_pred cCCCChHHHHHHHHHHH-HHHHHHHHHHhhchHHHHHCCC
Q 014998 215 VGHVSLNGMILPAALYF-WQIPHFMALAYLCRNDYAAGGY 253 (414)
Q Consensus 215 ~g~~~~~~~lL~~~~~l-w~~~h~~~~a~~D~edD~~aG~ 253 (414)
+ +++..|+++..+++ |..+ +..=+.+.+.+++.|.
T Consensus 342 ~--~~~s~wll~~~~~~~l~la--~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 342 G--VALSFWLLAFSMFFFLSLA--LVKRYTELRRALQRGK 377 (479)
T ss_pred c--cCHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHhcCC
Confidence 4 67777776544333 3222 2222334444556554
No 45
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.93 E-value=2.2e-23 Score=205.34 Aligned_cols=190 Identities=15% Similarity=0.011 Sum_probs=159.3
Q ss_pred hhhHHHHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCCCHHHHH
Q 014998 72 KARLSMLVVATSGTGFALGS-GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRISVRHAV 148 (414)
Q Consensus 72 RP~~~~~~~~~~~~G~llA~-~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~IS~~~Al 148 (414)
||+....++.++++|..+|. .+.+++...++++++++++++++|.+|||+|. +.|+.++.++.|++++|.+|++++.
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~ 80 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVK 80 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHH
Confidence 89999999999999999985 34789998999999999999999999999996 4677554457899999999999999
Q ss_pred HHHHHHHHHHHHHHHH---HhHH------HHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccchhhhhcc
Q 014998 149 TWASSVGVAGTALLAW---KANM------LTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 149 ~~~~~l~~~gl~ll~~---~~n~------~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~G~~A~~ 215 (414)
..+.++.+++.++..+ ..++ ....+++++++. ++.||. +|++...++.++..+|.+++++++++++
T Consensus 81 ~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~-~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~ 159 (284)
T TIGR00751 81 TALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAA-AITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQA 159 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHH-hHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 8887777655544332 2343 345677777777 789983 7887777999999999899999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
+.+++..++..+...+++......+.++|+|+|+++|.||+++++|.
T Consensus 160 ~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~ 206 (284)
T TIGR00751 160 HRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGD 206 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcch
Confidence 99999988888878888888788889999999999999999999973
No 46
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=6e-23 Score=201.96 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=137.1
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHH--HHHHHhhccccccccccCCCCC-CC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSGSTID-LAGLCWTCTGTMMVA--ASANSLNQLFEISNDAKMKRTM-RR 135 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~-~~~lll~~lg~~l~~--aa~~~iND~~D~eiD~~~~RT~-~R 135 (414)
..++++.|+++.||+.+...+.++++|..+|.....+ +...++++++.+++. ...|.+||++|+|.|++|+||+ +|
T Consensus 4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk~~~r 83 (282)
T PRK12875 4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDELNPKKDRER 83 (282)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccccCCCccCCC
Confidence 4567899999999999999999999999998743221 212333344444421 2335589999999999999998 68
Q ss_pred Ccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc---C-CCcccchhhhHhhhhcccccchh
Q 014998 136 PLP-SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT---P-LKQIHPVNTWVGAIVGAIPPLLG 210 (414)
Q Consensus 136 PLp-sG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt---~-lKr~t~~nv~vG~~~Galp~l~G 210 (414)
|++ +|+.+...+... ...+++.+.. ..++....+.+. .+++.+.|| . +|+++..+...+.++ .+|++++
T Consensus 84 ~~~~s~~~~~~~~~~l---~~~l~l~l~~-~~~~~~~~~ll~-~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~ 157 (282)
T PRK12875 84 EVRYRGDRRVLVAVAL---SGALALAFLL-VLPPAAWPALLA-FLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAA 157 (282)
T ss_pred CccHHHHHHHHHHHHH---HHHHHHHHHH-HhhHHHHHHHHH-HHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHH
Confidence 887 554444433222 2233343332 334443333333 344488998 3 888887775443333 4788899
Q ss_pred hhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHH
Q 014998 211 WTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTA 267 (414)
Q Consensus 211 ~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta 267 (414)
|++++|++++.. +++..++|+.+.++.++++|+|+|+++|+||+|+++|. +++.
T Consensus 158 y~~~tg~~~~~~--l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~-~~a~ 211 (282)
T PRK12875 158 YALVSGSLPPLL--AVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGE-RRTY 211 (282)
T ss_pred HHHHcCCCcHHH--HHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccH-hhHH
Confidence 999988776544 45556899999999999999999999999999999984 4443
No 47
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.91 E-value=2.8e-22 Score=196.55 Aligned_cols=276 Identities=15% Similarity=0.116 Sum_probs=198.2
Q ss_pred HhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccc--cCCCCCCC
Q 014998 62 HYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDA--KMKRTMRR 135 (414)
Q Consensus 62 ~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~--~~~RT~~R 135 (414)
.+.+.|+|++||++...++.|+++|..+|. +..+++...+++++++.+.+++.|..|||+|. ..|. ...++.++
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g 85 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSG 85 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccc
Confidence 455899999999999999999999999886 22578888999999999999999999999996 4675 44566778
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC-CC---cccchhhhHhhhhcccccc
Q 014998 136 PLPSGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP-LK---QIHPVNTWVGAIVGAIPPL 208 (414)
Q Consensus 136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~-lK---r~t~~nv~vG~~~Galp~l 208 (414)
-+...+++++..+.+.+.+...+.++.. ...|+..+.+|+++++. ++.||. -| +.+..++.+|.++|.+.++
T Consensus 86 ~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~-g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~ 164 (303)
T COG1575 86 LIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAA-GILYTGGPFPLGYMGLGEIFVGVFFGPLIVL 164 (303)
T ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh-eeeeccCCcCcccCCHHHHHHHHHHHHHHHH
Confidence 8888899999988877765544433322 24567777889898888 889996 44 4445579999999999999
Q ss_pred hhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHHH---HHHHHHHHHHHHHHH
Q 014998 209 LGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALVA---LRNCLYLVPLGYLAY 285 (414)
Q Consensus 209 ~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~~---~~~~l~lv~ls~l~~ 285 (414)
+.++.+++++++..++.++.+.+-+..-..++.++|.|+|+++|.+|+|++.| ++.++.. +....++..+ +..
T Consensus 165 g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG--~~~~~~l~~~l~~~a~l~~~--~~~ 240 (303)
T COG1575 165 GAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLG--RKNARKLYAALLVVAYLAIV--IFV 240 (303)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeec--cHhHHHHHHHHHHHHHHHHH--HHH
Confidence 99999999999998888888888777777788899999999999999999997 4443331 1122222222 223
Q ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHhhcCCcHH----HHHHHHHHhhHHHHHHHHHHHHHH
Q 014998 286 DWGVTSGWFCLESSLITLAISAAAFSFYRDRTTQ----KARKMFHASLLYLPVFMSGLLFHR 343 (414)
Q Consensus 286 ~~gl~~~~y~~~a~~~~~~il~~~~~~~~~~~~~----~a~~~F~~s~~~l~~~l~~~li~~ 343 (414)
..+...+++++ .++..-.......++.+++++. .++++=+.+..+..++++++++..
T Consensus 241 i~~~~~~~~ll-~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~ 301 (303)
T COG1575 241 ILGLFPVWGLL-FLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVGILLSQ 301 (303)
T ss_pred HHHhchHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44544445532 2222122233333444444432 355555666666677777666654
No 48
>PLN02922 prenyltransferase
Probab=99.91 E-value=4.9e-22 Score=198.31 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=160.0
Q ss_pred hHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCC
Q 014998 60 IRHYGRCYWELSKARLSMLVVATSGTGFALGSG--STIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRR 135 (414)
Q Consensus 60 ~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~R 135 (414)
...++|.|++.+||+.....+.++++|.++|.. +.+++...+++++++++.++++|.+|||+|. ..|+.++.++.|
T Consensus 11 ~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~ 90 (315)
T PLN02922 11 ELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVN 90 (315)
T ss_pred CccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCC
Confidence 456678899999999999999999999998852 5789999999999999999999999999995 578754322234
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhccccc
Q 014998 136 PLPSGRISVRHAVTWASSVGVAGTALLAWK----ANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPP 207 (414)
Q Consensus 136 PLpsG~IS~~~Al~~~~~l~~~gl~ll~~~----~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~ 207 (414)
+ .| |+++....+.++.++++...+.. .++....+++++++. ++.||. +|++...++.++..+|.+++
T Consensus 91 ~--~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~-~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v 165 (315)
T PLN02922 91 L--VG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILC-GYVYQCPPFRLSYKGLGEPLCFAAFGPLAT 165 (315)
T ss_pred c--cc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH-HHHHhcCCcccccCcchHHHHHHHHHHHHH
Confidence 4 34 99999887777666655322221 256777888888887 899982 89988889999999998888
Q ss_pred chhhhhccC----------CCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccch
Q 014998 208 LLGWTAAVG----------HVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADAS 262 (414)
Q Consensus 208 l~G~~A~~g----------~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~ 262 (414)
.+.+.++++ .+++..++..+...+++..--.++.++|+|+|+++|.||+++++|.
T Consensus 166 ~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~ 230 (315)
T PLN02922 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGT 230 (315)
T ss_pred HHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEECh
Confidence 777777766 3566777888888888888788888999999999999999999973
No 49
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.91 E-value=6.6e-22 Score=196.47 Aligned_cols=202 Identities=12% Similarity=0.029 Sum_probs=167.0
Q ss_pred HHhHHHHHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCCCCCCCC
Q 014998 61 RHYGRCYWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEIS--NDAKMKRTMRRP 136 (414)
Q Consensus 61 ~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~e--iD~~~~RT~~RP 136 (414)
+.+++.|++.+||+....+++++++|.++|. ++.+++...+++++++++.++++|.+|||+|.+ .|+. + ...
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~---~~~ 84 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN-K---FHS 84 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-c---ccC
Confidence 4557889999999999999999999999885 356899999999999999999999999999975 8884 2 223
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhcC----CCcccchhhhHhhhhcccccch
Q 014998 137 LPSGRISVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYTP----LKQIHPVNTWVGAIVGAIPPLL 209 (414)
Q Consensus 137 LpsG~IS~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt~----lKr~t~~nv~vG~~~Galp~l~ 209 (414)
.+++..+++++...+.++.+++.++.. ...++....+++++++. ++.||. +|++...++.++..+|.+++++
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~-~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g 163 (304)
T PRK07419 85 VVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFL-GYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAA 163 (304)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hheccCCCcccCCCCchHHHHHHHHHHHHHHH
Confidence 556666899988887777666554332 23577778888888887 889972 8998888999999999999999
Q ss_pred hhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998 210 GWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV 269 (414)
Q Consensus 210 G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~ 269 (414)
+++.+++.+++..++..+...+.+..--.++.++|+|+|+++|.+|+++++| ++.+..
T Consensus 164 ~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG--~~~a~~ 221 (304)
T PRK07419 164 ALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLG--TKRGAQ 221 (304)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeec--hHhHHH
Confidence 9999999999998888888888877777788899999999999999999997 444433
No 50
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.90 E-value=3.4e-21 Score=189.92 Aligned_cols=196 Identities=16% Similarity=0.081 Sum_probs=159.1
Q ss_pred HHhHhhhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCC
Q 014998 67 YWELSKARLSMLVVATSGTGFALGS--GSTIDLAGLCWTCTGTMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 67 yl~L~RP~~~~~~~~~~~~G~llA~--~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~I 142 (414)
|++.+||+....++.+++.|..+|. ++.+|+...+++++++++.++++|.+|||+|. ..|+.+..++.| +..
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~----~~~ 77 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVN----LTG 77 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCccc----ccC
Confidence 6789999999999999999999985 35689998999999999999999999999996 468843322233 334
Q ss_pred CHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHhc--C--CCcccchhhhHhhhhcccccchhhhhcc
Q 014998 143 SVRHAVTWASSVGVAGTALLA---WKANMLTAGLAASNLILYAFVYT--P--LKQIHPVNTWVGAIVGAIPPLLGWTAAV 215 (414)
Q Consensus 143 S~~~Al~~~~~l~~~gl~ll~---~~~n~~~~~l~l~~l~ly~~iYt--~--lKr~t~~nv~vG~~~Galp~l~G~~A~~ 215 (414)
|++++...+.++.+++.++.. ...++....+++++++. ++.|| + +|++...++.++..+|.++++++++.++
T Consensus 78 ~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~-~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt 156 (285)
T TIGR02235 78 SRSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFL-GYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQS 156 (285)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhC
Confidence 678877766666555544332 23466677888888887 89998 2 8998888999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccchhhHHHHH
Q 014998 216 GHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTALV 269 (414)
Q Consensus 216 g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G~G~~ta~~ 269 (414)
+.+++..++..+...+.+..--.++.++|+|+|+++|.||+++++| ++.+..
T Consensus 157 ~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG--~~~a~~ 208 (285)
T TIGR02235 157 QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLG--TKLAAK 208 (285)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheec--HHhHHH
Confidence 9999999998888888888877888899999999999999999997 444433
No 51
>PLN02878 homogentisate phytyltransferase
Probab=99.89 E-value=4.8e-21 Score=186.57 Aligned_cols=168 Identities=18% Similarity=0.139 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 014998 98 AGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASN 177 (414)
Q Consensus 98 ~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~ 177 (414)
..++.+.+++.++......+|||+|+|+||+|| |+||||||++|+++|+.+...++++|+.+++ ..|+.++..+++.
T Consensus 23 ~~~l~~~~~~l~~niyivglNd~~D~EIDkINk--P~rPIpSG~iS~~~a~~~~~~~~~lg~~la~-~~g~~~l~~al~~ 99 (280)
T PLN02878 23 TGLLEALVPALLMNIYIVGLNQLYDIEIDKVNK--PYLPLASGEFSVATGVAIVTSFAIMSFGMGW-IVGSWPLFWALFV 99 (280)
T ss_pred HHHHHHHHHHHhhhhheechhhhhhhcccccCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHH
Confidence 445667788888888899999999999999999 9999999999999999999999999998886 6787666555555
Q ss_pred HHHHHHHhcC------CCcccch-hhhH---hhhhcccccchhh-hhccC---CCChHHHHHHHHHHHHHHHHHHHHHhh
Q 014998 178 LILYAFVYTP------LKQIHPV-NTWV---GAIVGAIPPLLGW-TAAVG---HVSLNGMILPAALYFWQIPHFMALAYL 243 (414)
Q Consensus 178 l~ly~~iYt~------lKr~t~~-nv~v---G~~~Galp~l~G~-~A~~g---~~~~~~~lL~~~~~lw~~~h~~~~a~~ 243 (414)
.++.+.+|+. +||.... +... +++...++...+. .++.| .++...++..+.+++.....++.+.++
T Consensus 100 ~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 179 (280)
T PLN02878 100 SFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIP 179 (280)
T ss_pred HHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCc
Confidence 5233788983 4665544 2111 1111112211110 11112 123333433334455556677889999
Q ss_pred chHHHHHCCCCccccccchhhHHHHH
Q 014998 244 CRNDYAAGGYRMISLADASGQRTALV 269 (414)
Q Consensus 244 D~edD~~aG~ktlav~~G~G~~ta~~ 269 (414)
|.|+|++.|++|+|+++|. +++.++
T Consensus 180 DieGD~~~Gi~Tlpv~lG~-~~~~~i 204 (280)
T PLN02878 180 DVEGDRIFGIRSFSVRLGQ-KRVFWL 204 (280)
T ss_pred CchhHHHCCCceechhhCh-HHHHHH
Confidence 9999999999999999984 455443
No 52
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.81 E-value=7.2e-18 Score=166.79 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAF 183 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~ 183 (414)
++.+.+...++|++||++|+|+|++|+ |+||.+ |++.++.++++..++|+.+++ ..|+. .+++++.+. ++
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~--P~r~~~----s~~~a~~ls~la~llGl~La~-~~g~~--ll~ll~~l~-g~ 133 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNR--SELIGS----NKKIGLLVSLLAFLLGTYILA-MDGML--LLAFLPFIT-GY 133 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccC--cccccc----CHHHHHHHHHHHHHHHHHHHH-HHhHH--HHHHHHHHH-HH
Confidence 456678889999999999999999997 799997 899999999999999998875 66764 356667766 78
Q ss_pred HhcC----------CCcccch-hhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHHH----HHHHHHHHhhchHHH
Q 014998 184 VYTP----------LKQIHPV-NTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQ----IPHFMALAYLCRNDY 248 (414)
Q Consensus 184 iYt~----------lKr~t~~-nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~----~~h~~~~a~~D~edD 248 (414)
.|+. +|..+.. |+.+|..+|.+.+. +.....+. ++....+++.. .....++.++|.|+|
T Consensus 134 lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g-~~g~~~~~-----~~~~~~i~l~~~~~l~~~~iindirDiEGD 207 (307)
T PRK13591 134 LYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAG-IAGSYCGS-----LIPVGLIFLFFGVKLFINSCVYDFKDVKGD 207 (307)
T ss_pred HhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHH-HHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence 9993 3444545 89999999853322 11111111 11122222222 334467899999999
Q ss_pred HHCCCCccccccchhhHHHHH
Q 014998 249 AAGGYRMISLADASGQRTALV 269 (414)
Q Consensus 249 ~~aG~ktlav~~G~G~~ta~~ 269 (414)
++.|.||+|+.+|. +++.+.
T Consensus 208 r~~G~kTLPV~lG~-~~A~~l 227 (307)
T PRK13591 208 TLAGIKTLPVSLGE-QKTRNL 227 (307)
T ss_pred HHcCCeeEEEEECH-HHHHHH
Confidence 99999999999984 444433
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.53 E-value=1.3e-14 Score=136.43 Aligned_cols=227 Identities=15% Similarity=0.114 Sum_probs=163.8
Q ss_pred ccccCCcCCCCCCCCCCc-CCCCCChhhHhHHhHHHHHhHhhhhHHHHHHHHHHHHHHHhcC--C--CCcHHHHHHHHHH
Q 014998 32 RKCHGVRSSSSASASDSA-TGAAADPFSLIRHYGRCYWELSKARLSMLVVATSGTGFALGSG--S--TIDLAGLCWTCTG 106 (414)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lk~yl~L~RP~~~~~~~~~~~~G~llA~~--~--~~~~~~lll~~lg 106 (414)
.|-+|.|+++.-..+.-. .-+-++-.+-..++.+.|+-..||+..-.++.++..|..+|.. + .+.+...+++.++
T Consensus 28 ea~~g~~~~g~d~gv~~~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~~~fl~a~a 107 (359)
T KOG4581|consen 28 EAGDGADAAGADAGVAEQDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLATFFLCAFA 107 (359)
T ss_pred ecccCcccccCccCCcccccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHHHHHHHHhh
Confidence 344555555443322222 2222222334778889999999999999999999999999863 2 3455667778888
Q ss_pred HHHHHHHHHHhhccccc--cccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH--HhHHHH---HHH-HHHHH
Q 014998 107 TMMVAASANSLNQLFEI--SNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAW--KANMLT---AGL-AASNL 178 (414)
Q Consensus 107 ~~l~~aa~~~iND~~D~--eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~--~~n~~~---~~l-~l~~l 178 (414)
+..++++||..|.|+|. +||++.. .+|.++...+.+.+...++.++..+|.....+ .++|.- ..+ -+.++
T Consensus 108 vlavh~agnlvntyfdf~kgid~kka--ddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggl 185 (359)
T KOG4581|consen 108 VLAVHCAGNLVNTYFDFIKGIDHKKA--DDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGL 185 (359)
T ss_pred heeeecccchhhhhhhhhhccccccc--cchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCc
Confidence 88899999999999995 7998654 78999999999999999998888776544332 344422 122 12222
Q ss_pred HHHHHHhcC---CCcccchhhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCc
Q 014998 179 ILYAFVYTP---LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRM 255 (414)
Q Consensus 179 ~ly~~iYt~---lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~kt 255 (414)
-. .++|+- .|.+...++++-+++|.+.++..++.++|+++|.++.-++.+.+-+-+..-.+..+|.|.||++|+-|
T Consensus 186 s~-sflytggigfkyialgdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivt 264 (359)
T KOG4581|consen 186 SG-SFLYTGGIGFKYIALGDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVT 264 (359)
T ss_pred cc-ceeEecccceEEEeccCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEE
Confidence 23 578985 78888888888888999999999999999988776655555555443322245678999999999999
Q ss_pred cccccc
Q 014998 256 ISLADA 261 (414)
Q Consensus 256 lav~~G 261 (414)
+++..|
T Consensus 265 lailig 270 (359)
T KOG4581|consen 265 LAILIG 270 (359)
T ss_pred EEEeec
Confidence 999986
No 54
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=93.44 E-value=1.4 Score=43.86 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHH
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL 161 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~l 161 (414)
+++.++..++-..+||+.|+|-|++.. .|.++. ++..+.+..++.++.+++.++
T Consensus 171 ~~a~~l~~~~~~~in~i~Die~D~~aG---i~Tlav-~lG~~~a~~~~~~~~~~a~~~ 224 (282)
T PRK12875 171 VAGGWLWAMGMHTFSAIPDIEPDRAAG---IRTTAT-VLGERRTYAYCAACWLLAAAA 224 (282)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHcC---Cccchh-hccHhhHHHHHHHHHHHHHHH
Confidence 344556677778999999999999765 233332 444556665555444444433
No 55
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=91.05 E-value=8.1 Score=37.79 Aligned_cols=38 Identities=5% Similarity=-0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 223 MILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 223 ~lL~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
.+.++..++.+.+-...+.+.|+|.|++. .+.-|+..|
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G 77 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSG 77 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCC
Confidence 33444556666666678889999999988 577777665
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.92 E-value=8 Score=37.89 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
.+..++....-+++||+-|+|-|++..+ +.=|..-|+
T Consensus 167 ~~~~fl~~~~~~~~~d~~D~e~D~~~G~-~Tlpv~lG~ 203 (285)
T PRK12872 167 AVFIFLKSFIREIVFDIKDIEGDRKSGL-KTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHcCC-cccchhcch
Confidence 3444455667778999999999998765 355665565
No 57
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=88.21 E-value=15 Score=36.07 Aligned_cols=36 Identities=11% Similarity=-0.058 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 225 LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 225 L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
..+..++-+.+-...+.+.|+|-|+... +.-|+..|
T Consensus 43 ~~l~~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G 78 (276)
T PRK12882 43 AFAAVFLATGAGNAINDYFDREIDRINR-PDRPIPSG 78 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccC-CCCCcCCC
Confidence 3334445555556678889999998755 77777765
No 58
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=87.88 E-value=6.3 Score=39.23 Aligned_cols=55 Identities=11% Similarity=0.212 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHH
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALL 162 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll 162 (414)
.++..+..++-..+||+-|.|.|+++. .|-+|. ++..+.+..++.++.+++.++.
T Consensus 166 ~~~~~~~~~a~~ii~~irDie~Dr~~G---~~Tlpv-~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 166 LAAFFLWGMASHAFGAVQDVVADREAG---IASIAT-VLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHHHHHHHHHHHHHhCcchHhHHHcC---CccchH-HhcHHHHHHHHHHHHHHHHHHH
Confidence 344444577888999999999999875 233432 4567777777776666665444
No 59
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=87.15 E-value=21 Score=35.05 Aligned_cols=36 Identities=0% Similarity=-0.202 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 225 LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 225 L~~~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
..+..++.+.+-...+.+.|+|.|++.. +.-|+.-|
T Consensus 42 ~~l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG 77 (279)
T PRK09573 42 AALVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSG 77 (279)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccC-CCCCcCCC
Confidence 3344556666666788899999998765 66666654
No 60
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=86.95 E-value=8.4 Score=38.75 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=22.9
Q ss_pred HHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 109 l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+...+-..+||+.|+|-|++..+ +.=|+.-|+
T Consensus 200 l~~~~~~~~~d~~D~e~D~~aG~-~Tlpv~~G~ 231 (314)
T PRK07566 200 LGAHGIMTLNDFKSVEGDRQLGL-RSLPVVFGE 231 (314)
T ss_pred HHHHHHHHHHHHHHhHhHHHcCC-cccceeEcH
Confidence 34455688999999999998754 355555554
No 61
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=86.65 E-value=21 Score=35.73 Aligned_cols=32 Identities=6% Similarity=-0.109 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHC-CCCccccccc
Q 014998 230 YFWQIPHFMALAYLCRNDYAAG-GYRMISLADA 261 (414)
Q Consensus 230 ~lw~~~h~~~~a~~D~edD~~a-G~ktlav~~G 261 (414)
++...+-...+.+.|+|.|++. ..|.-|+.-|
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG 88 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASG 88 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCC
Confidence 3333344456788999999885 2233444443
No 62
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=86.22 E-value=6 Score=38.96 Aligned_cols=39 Identities=15% Similarity=0.033 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 102 WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 102 l~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+..+..++.+.+-..+||..|+|-|++..++ .=|+.-|+
T Consensus 162 ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~-tlpv~~G~ 200 (282)
T TIGR01475 162 LLGIGVGFWIAGFDLIYAIQDYEFDRKNGLH-SIPARFGI 200 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHHHcCCC-chHHHhch
Confidence 3455566667777889999999999988753 66666673
No 63
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=86.02 E-value=19 Score=36.01 Aligned_cols=33 Identities=6% Similarity=-0.186 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 228 ALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 228 ~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
...+-+..-...+.+.|+|.|++.+ +.-|+..|
T Consensus 62 ~~~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G 94 (306)
T TIGR02056 62 SGPCLTGYTQTINDFYDRDIDAINE-PYRPIPSG 94 (306)
T ss_pred HHHHHHHHHHHHHhHhhhhhhccCC-CCCCCCCC
Confidence 3355566666677889999887665 35555554
No 64
>PRK13591 ubiA prenyltransferase; Provisional
Probab=85.66 E-value=5.4 Score=40.28 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=18.9
Q ss_pred HhhccccccccccCCCCCCCCccCCC
Q 014998 116 SLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 116 ~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
.+||+-|.|-|+++.|. .=|+.=|+
T Consensus 197 iindirDiEGDr~~G~k-TLPV~lG~ 221 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIK-TLPVSLGE 221 (307)
T ss_pred HHHHhhhhHhHHHcCCe-eEEEEECH
Confidence 68999999999988652 55555553
No 65
>PLN00012 chlorophyll synthetase; Provisional
Probab=85.31 E-value=12 Score=38.91 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 106 g~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
..++...+-..+||+-|+|-|++... +.=|+.-|+
T Consensus 260 ~~~l~~lai~ivnd~~Die~Dr~aG~-~TLpV~~G~ 294 (375)
T PLN00012 260 LYSIAGLGIAIVNDFKSIEGDRALGL-QSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHcCC-cccceeech
Confidence 34456667888999999999998753 355655564
No 66
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=84.18 E-value=11 Score=37.12 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHH
Q 014998 103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAG 158 (414)
Q Consensus 103 ~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~g 158 (414)
..+...+........||+.|+|-|+++.|. +=|.-=| .+.+..+...+.+++
T Consensus 173 ~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~-Tl~v~lG---~~~a~~~~~~l~~~~ 224 (293)
T PRK06080 173 PALPCGLLIGAVLLANNIRDIETDRENGKN-TLAVRLG---DKNARRLHAALLALA 224 (293)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHcCCe-eEEeeEC---cHhHHHHHHHHHHHH
Confidence 344445566677889999999999988642 3444334 444444443333333
No 67
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=84.16 E-value=14 Score=37.25 Aligned_cols=44 Identities=5% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q 014998 109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGV 156 (414)
Q Consensus 109 l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~ 156 (414)
+..+.....||+-|+|-|+++.|. +-|.-=| ++.+..+...+.+
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~-TL~v~lG---~~~a~~ly~~l~~ 228 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKR-SPIVRLG---TKRGAQLLPWIVG 228 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCc-ceeeeec---hHhHHHHHHHHHH
Confidence 455677789999999999998742 3343334 4555444433333
No 68
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=83.43 E-value=12 Score=37.34 Aligned_cols=47 Identities=15% Similarity=0.063 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
.++...+ +..+..++....-..+||+.|+|-|+++.+ +.=|+.-|+-
T Consensus 172 ~~~~~~~-ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~Tlpv~~G~~ 218 (297)
T PRK12871 172 QPDMTAL-LYMVFFYPWTMAHLGLNDFIDLENDRARGM-KSIAVLYGMK 218 (297)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHcCC-eeeeeeechH
Confidence 3444322 334555666778899999999999999865 3666766764
No 69
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=82.93 E-value=16 Score=36.37 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
..++... +.++.+++-+.+-..+|++.|+|-|++... +.=|+.-|+
T Consensus 164 ~~~~~~~-~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi-~slpv~~G~ 209 (291)
T PRK12874 164 EIPLWSV-FLALGVMFWVAGFDLLYSLQDMEFDKKRGL-HSIPSKFGE 209 (291)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHHHHHhccHHHHHHcCC-CcccHHhhh
Confidence 3454333 334566677778888999999999987754 355555555
No 70
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=82.92 E-value=9.9 Score=38.30 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCC
Q 014998 101 CWTCTGTMMVAASANSLNQLFEISNDAKMKR 131 (414)
Q Consensus 101 ll~~lg~~l~~aa~~~iND~~D~eiD~~~~R 131 (414)
++..+.+.+..+..+..|++.|.|.|+++.|
T Consensus 179 ll~slp~gil~~~Il~aNNirDie~D~~~gk 209 (303)
T COG1575 179 LLPSLPVGILIANILLANNLRDIEEDIRNGK 209 (303)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhHHhcCC
Confidence 4555666777788889999999999999985
No 71
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=82.66 E-value=21 Score=35.10 Aligned_cols=33 Identities=12% Similarity=-0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 228 ALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 228 ~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
...+-+..-...+.+.|+|.|++.+ +.-|+..|
T Consensus 46 ~~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G 78 (283)
T TIGR01476 46 AGPLGTGFSQSINDYFDRDVDAINE-PQRPIPSG 78 (283)
T ss_pred HHHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCC
Confidence 3344555556778899999998766 55665554
No 72
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=82.28 E-value=15 Score=37.10 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHH
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGT 159 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl 159 (414)
.+...+..+.....||+-|+|-|+++.|. +=|. ++.++.+..+..++.+++.
T Consensus 195 slp~g~l~~~ill~Nn~~D~e~D~~~gk~-TL~v---~lG~~~a~~l~~~l~~~a~ 246 (317)
T PRK13387 195 SLPIIFTIANIMLANNLRDLDEDIKNHRY-TLVY---YIGREKGVVLFAILFYASY 246 (317)
T ss_pred HHHHHHHHHHHHHhcCCccchhHHHcCCe-eeee---eEcHHhHHHHHHHHHHHHH
Confidence 33444555566889999999999998642 3343 3345555555444444443
No 73
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=82.16 E-value=14 Score=36.45 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
.+++.. .+..++.++...+-..+|++.|+|-|++... +.=|+.-|+-
T Consensus 157 ~~~~~~-~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~ 203 (281)
T TIGR01474 157 DLSTAA-WVLYLANILWTLGYDTIYAMQDKEDDIKIGV-KSTALRFGDN 203 (281)
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHHHHHhhHHhHHHcCC-CcccHHhhhh
Confidence 344432 2345666777778889999999999998764 3566666743
No 74
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=80.37 E-value=26 Score=34.83 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 93 STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 93 ~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+..++..+ +..+..++...+-..+|++.|+|-|++... +.=|+--|.
T Consensus 155 g~~~~~~~-ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv-~sl~v~~G~ 201 (284)
T PRK12888 155 GTWSWPAV-LLGLAVGLWIGGFDLIYACQDAEVDRRIGV-RSVPARFGV 201 (284)
T ss_pred CCCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHCCC-cCcchhhCc
Confidence 34555433 445566667778899999999999998753 345555554
No 75
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=79.89 E-value=25 Score=35.03 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHH
Q 014998 109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149 (414)
Q Consensus 109 l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~ 149 (414)
+..+.....|++-|+|-|+++.| |-++- ++..+.+..
T Consensus 182 l~~~~il~~n~~~D~e~D~~~G~---~Tlav-~lG~~~a~~ 218 (296)
T PRK05951 182 LLMALVLLSNNLRDIEDDERKGI---PTLAV-IFGRRGAAL 218 (296)
T ss_pred HHHHHHHHHCCCccchhHHHCCC---eeeee-eEcHhhHHH
Confidence 44567888999999999998863 33433 555666633
No 76
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=79.84 E-value=35 Score=33.40 Aligned_cols=33 Identities=9% Similarity=-0.104 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 228 ALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 228 ~~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
..++-..+-...+.+.|+|.|+..+ +.-|+..|
T Consensus 45 ~~~~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG 77 (277)
T PRK12883 45 VVYLGCSGGNTINDYFDYEIDKINR-PNRPLPRG 77 (277)
T ss_pred HHHHHHHHHhHHHhhhhHhccccCC-CCCCCCCC
Confidence 3334344445677889999998765 77777765
No 77
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.83 E-value=19 Score=35.51 Aligned_cols=39 Identities=10% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 102 WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 102 l~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+.++..++...+-..+|++.|+|-|+++.++ .=|+.-|+
T Consensus 169 ~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~-tl~v~~G~ 207 (285)
T PRK12847 169 LLYIGCIFWTIGYDTIYAYQDKKDDLKIGVK-STAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhccHhhHHHcCCc-hhHHHhcc
Confidence 4455666777777889999999999988753 55665564
No 78
>PLN02922 prenyltransferase
Probab=78.81 E-value=21 Score=36.13 Aligned_cols=50 Identities=6% Similarity=-0.008 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHH
Q 014998 103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGV 156 (414)
Q Consensus 103 ~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~ 156 (414)
..+...+..++....||+-|+|-|+++.|. +=|..=| ++.+..+...+..
T Consensus 193 ~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~-TL~v~lG---~~~a~~l~~~l~~ 242 (315)
T PLN02922 193 ASVLVGLTTTLILFCSHFHQIDGDRAVGKM-SPLVRLG---TEKGSRVVRWAVL 242 (315)
T ss_pred HHHHHHHHHHHHHHHccCcchhhHHHcCcc-ceeeEEC---hHHHHHHHHHHHH
Confidence 344444566678889999999999998742 3344334 4555444433333
No 79
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=78.37 E-value=34 Score=34.13 Aligned_cols=29 Identities=10% Similarity=0.006 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCC
Q 014998 102 WTCTGTMMVAASANSLNQLFEISNDAKMK 130 (414)
Q Consensus 102 l~~lg~~l~~aa~~~iND~~D~eiD~~~~ 130 (414)
+..+++++-..+=.++.++.|+|-|++..
T Consensus 163 ~l~~~~~~W~~g~D~iYa~qD~e~D~~~G 191 (286)
T PRK12895 163 IIFISSSLWIAGFDIIYVIPDIEYDKING 191 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhHHHcC
Confidence 45667777777888999999999999875
No 80
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=78.33 E-value=24 Score=33.23 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=23.5
Q ss_pred CCCChHHHHH-HHHHHHHHHHHHHHHHhhchHHHHHC-CCCcccccc
Q 014998 216 GHVSLNGMIL-PAALYFWQIPHFMALAYLCRNDYAAG-GYRMISLAD 260 (414)
Q Consensus 216 g~~~~~~~lL-~~~~~lw~~~h~~~~a~~D~edD~~a-G~ktlav~~ 260 (414)
+..++....+ .+..++.+..-...+.+.|.|.|+.. +.+.-|+..
T Consensus 18 ~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~ 64 (257)
T PF01040_consen 18 GPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPS 64 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhH
Confidence 3445543333 23333444444445667888888875 334555544
No 81
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=77.25 E-value=29 Score=34.54 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHH
Q 014998 108 MMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAG 158 (414)
Q Consensus 108 ~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~g 158 (414)
.+..++....||+-|+|-|+++.|. +=|. ++..+.|..+...+...+
T Consensus 174 g~l~~~il~~Nn~~D~~~D~~~Gk~-Tl~v---~lG~~~a~~l~~~l~~~a 220 (284)
T TIGR00751 174 GLLACAVLNINNLRDIPTDARAGKN-TLAV---RLGDARTRMYHQGLLAVA 220 (284)
T ss_pred HHHHHHHHHHcCcccchhHHHcCCE-eehh---hcchHhHHHHHHHHHHHH
Confidence 3445677779999999999998642 3333 344555554444444333
No 82
>PRK08238 hypothetical protein; Validated
Probab=75.34 E-value=59 Score=34.82 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhchHHHHHCC-CCccccccc
Q 014998 231 FWQIPHFMALAYLCRNDYAAGG-YRMISLADA 261 (414)
Q Consensus 231 lw~~~h~~~~a~~D~edD~~aG-~ktlav~~G 261 (414)
+-..+-...+.+.|+|.|++.- -|.-|+.-|
T Consensus 237 l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG 268 (479)
T PRK08238 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASG 268 (479)
T ss_pred HHHHHHHHHHhhHHhhhhccCCCCCCCCCCCC
Confidence 3333444567889999998863 244455544
No 83
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=73.70 E-value=47 Score=32.73 Aligned_cols=44 Identities=9% Similarity=-0.279 Sum_probs=25.5
Q ss_pred CChHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHCCC-Cccccccc
Q 014998 218 VSLNGM-ILPAALYFWQIPHFMALAYLCRNDYAAGGY-RMISLADA 261 (414)
Q Consensus 218 ~~~~~~-lL~~~~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G 261 (414)
.++..+ +.++..++-+.+-...+.+.|+|-|++... +.-|+.-|
T Consensus 33 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG 78 (279)
T PRK12869 33 VSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVG 78 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCC
Confidence 444333 333444455555566778889999987543 44554454
No 84
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=73.14 E-value=40 Score=33.51 Aligned_cols=50 Identities=8% Similarity=0.010 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHH
Q 014998 106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGT 159 (414)
Q Consensus 106 g~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl 159 (414)
-..+..++....||+-|+|-|+++.|. +-|. ++.++.+..+...+..++.
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~-TL~v---~lG~~~a~~l~~~l~~~~y 218 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKR-SPVV---RLGTKLAAKIVPWVISLSY 218 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCc-ceeh---eecHHhHHHHHHHHHHHHH
Confidence 334566678889999999999998642 3333 3445555555444444333
No 85
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=72.84 E-value=31 Score=35.09 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 104 CTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 104 ~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
.+..++...+-..+||+.|+|-|++..+ +.=|+.=|+
T Consensus 186 ~~~~~l~~~~~~~i~d~~D~egD~~~G~-kTlpV~~G~ 222 (331)
T PRK12392 186 AGLNFFMAIALIIMNDFKSVEGDKEGGL-KSLTVMIGA 222 (331)
T ss_pred HHHHHHHHHHHHHHHcccchhhHHHcCC-eeeEeEEcH
Confidence 3444566667778999999999998864 355554453
No 86
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=72.33 E-value=97 Score=30.52 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHCCC-Cccccccc
Q 014998 225 LPAALYFWQIPHFMALAYLCRNDYAAGGY-RMISLADA 261 (414)
Q Consensus 225 L~~~~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G 261 (414)
.++..++...+-...+.+.|+|-|+++-. |.-|+.-|
T Consensus 52 ~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG 89 (289)
T COG0382 52 AFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSG 89 (289)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCC
Confidence 33444555555556778999999987765 45565554
No 87
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=71.31 E-value=19 Score=36.25 Aligned_cols=27 Identities=4% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhccccccccccCCC
Q 014998 105 TGTMMVAASANSLNQLFEISNDAKMKR 131 (414)
Q Consensus 105 lg~~l~~aa~~~iND~~D~eiD~~~~R 131 (414)
+..++...+-..+||+.|+|-|+++.+
T Consensus 189 ~~~~~~~~~~~l~~di~D~egD~~~Gi 215 (308)
T PRK12887 189 LFVLVFTFAIAIFKDIPDMEGDRQYQI 215 (308)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHcCC
Confidence 344455667778999999999998864
No 88
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=70.33 E-value=83 Score=31.59 Aligned_cols=51 Identities=18% Similarity=-0.093 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhhchHHHHHCCC-CccccccchhhHHHHHHHHHHHHHHHHH
Q 014998 229 LYFWQIPHFMALAYLCRNDYAAGGY-RMISLADASGQRTALVALRNCLYLVPLG 281 (414)
Q Consensus 229 ~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G~G~~ta~~~~~~~l~lv~ls 281 (414)
.++-..+-...+.+.|+|-|++... +.-|+.-| +-+...+..+.+.+..++
T Consensus 56 ~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG--~is~~~A~~~~~~l~~~g 107 (306)
T PRK13362 56 LSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTG--EISLGEALGFGLALGVAG 107 (306)
T ss_pred HHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHH
Confidence 3343444455677889998976543 34565554 433334333443333333
No 89
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=68.53 E-value=38 Score=33.95 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCC
Q 014998 103 TCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRIS 143 (414)
Q Consensus 103 ~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS 143 (414)
..++.++...+=.++|++.|+|-|++... +.=|+-=|+-+
T Consensus 182 l~~~~~lw~~~~d~iya~~D~e~D~~~Gi-~Slpv~~G~~a 221 (300)
T PRK13106 182 FVIGTILWAAGFDLYNHIPDAEFDREMGL-HSFAVVLGKWA 221 (300)
T ss_pred HHHHHHHHHHHHHHHHHccchhhHHHCCC-CccHHHHhhhH
Confidence 34456666777788999999999997764 35555556333
No 90
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=67.84 E-value=33 Score=34.11 Aligned_cols=33 Identities=12% Similarity=-0.087 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhchHHHHHCCC-Cccccccc
Q 014998 229 LYFWQIPHFMALAYLCRNDYAAGGY-RMISLADA 261 (414)
Q Consensus 229 ~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G 261 (414)
.++-..+-...+.+.|+|-|++... +.-|+.-|
T Consensus 53 ~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG 86 (296)
T PRK04375 53 IALVAGAAGALNNYIDRDIDAKMERTKNRPLVTG 86 (296)
T ss_pred HHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCC
Confidence 3444444456778899998977432 44555554
No 91
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=67.41 E-value=63 Score=32.58 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 93 STIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 93 ~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+.+++..+ +..++.++....-..++++.|+|-|++... +.=|+.-|.
T Consensus 188 g~~~~~~~-~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~ 234 (314)
T PRK12878 188 GSLSLAAV-LLYAGSIAWTIGYDTIYAHQDKEDDALIGV-KSTARLFGD 234 (314)
T ss_pred CCCchHHH-HHHHHHHHHHHHHHHHHHhhhHhhHHHcCC-cccchHhch
Confidence 34555433 344556677777788899999999998753 355665565
No 92
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=66.33 E-value=91 Score=30.99 Aligned_cols=47 Identities=21% Similarity=0.178 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
.+++..+ +..+..++-+.+-..+|++.|+|-|++... |.=|+.-|+=
T Consensus 159 ~~~~~~~-ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi-~slpv~~G~~ 205 (291)
T PRK12886 159 TIELPAI-LLGLAVLFWVAGFDILYALQDLEFDRKEGL-HSIPAKLGVN 205 (291)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHHHHHhccHHhHHHcCC-cCcchhcCch
Confidence 3444332 334444555555567899999999997764 4666666653
No 93
>PRK13595 ubiA prenyltransferase; Provisional
Probab=63.30 E-value=83 Score=31.61 Aligned_cols=60 Identities=20% Similarity=0.087 Sum_probs=26.9
Q ss_pred CCcccchhhhHhhhhcccccchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHH---hhchHHHHHCCCC
Q 014998 188 LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALA---YLCRNDYAAGGYR 254 (414)
Q Consensus 188 lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a---~~D~edD~~aG~k 254 (414)
.|..++.+.......| ....++.+++.+.++...+++-...|-.+++ +-|+|-|+++..+
T Consensus 19 sRP~~wi~t~~~~~~G-------~~~~g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 19 SRPALWVNTVGTLVTG-------VWLTGHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hCcHHHHHHHHHHHHH-------HHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 4555555654444443 2222334565212222223333344444444 5677777654433
No 94
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=62.42 E-value=1.3e+02 Score=29.51 Aligned_cols=36 Identities=11% Similarity=-0.121 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHCCC-Cccccccc
Q 014998 226 PAALYFWQIPHFMALAYLCRNDYAAGGY-RMISLADA 261 (414)
Q Consensus 226 ~~~~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G 261 (414)
.+..++-+.+-...+.+.|+|-|++... +.-|+.-|
T Consensus 41 ~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG 77 (280)
T TIGR01473 41 LLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTG 77 (280)
T ss_pred HHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCC
Confidence 3344555555566788999998986332 44555554
No 95
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=61.69 E-value=1.2e+02 Score=29.82 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
..++. ..+.++..++-+..-...|.+.|+|-|++... +.=|+.-|.=
T Consensus 159 ~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~-~tlpv~~G~~ 205 (282)
T PRK12848 159 SVPLE-AWLLFLANILWTVAYDTQYAMVDRDDDLKIGI-KSTAILFGRY 205 (282)
T ss_pred CCcHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHcCC-ccccHHhccc
Confidence 34444 33445666677777888999999999998764 3566655653
No 96
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=61.16 E-value=81 Score=31.31 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCH
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~ 144 (414)
..++.. .+..+.+++...+-..+|++.|+|-|++...+ .=|+.-|+=+.
T Consensus 163 ~~~~~~-~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~-slav~~G~~~~ 211 (290)
T PRK12870 163 HLDLGT-WLLWAATVFWTLGFDTVYAMSDREDDLRIGVN-SSAIFFGRYAP 211 (290)
T ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCc-chhHHhccccH
Confidence 344432 24456677888888999999999999987642 45554554433
No 97
>PRK13592 ubiA prenyltransferase; Provisional
Probab=60.72 E-value=1.5e+02 Score=29.88 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhchHHHHHCCCCccccccc
Q 014998 229 LYFWQIPHFMALAYLCRNDYAAGGYRMISLADA 261 (414)
Q Consensus 229 ~~lw~~~h~~~~a~~D~edD~~aG~ktlav~~G 261 (414)
+++-...-...+.+.|+|.|+. ..+--|+.-|
T Consensus 55 vf~~~~~gniiNDy~D~EIDrI-N~P~RPLPsG 86 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRR-LFPHRALPSG 86 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhh-cCCCCCCCcC
Confidence 3343343445678999999954 3455555444
No 98
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=58.44 E-value=1.4e+02 Score=29.70 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=27.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 94 TIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 94 ~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
.+++...+...++.++-+..=.++..+.|+|-|++... +.=|+.-|+=
T Consensus 162 ~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi-~sl~v~~G~~ 209 (289)
T PLN02809 162 SLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGV-KSTALRFGDD 209 (289)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCC-cccchhhcHH
Confidence 34443333234444444444456677789999998764 3555555653
No 99
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=54.61 E-value=1.8e+02 Score=29.21 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCcHHH-HHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCC
Q 014998 82 TSGTGFALGSGSTIDLAG-LCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141 (414)
Q Consensus 82 ~~~~G~llA~~~~~~~~~-lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~ 141 (414)
+.+.|+.... +.+++.. .+...++.++-+..=-++-.+.|+|-|++..- +.=|+.-|+
T Consensus 154 ~~l~gw~Av~-g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv-~slpv~~G~ 212 (294)
T PRK12873 154 AVLIPWAAAE-GSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGL-NSSALSLGS 212 (294)
T ss_pred HHHHHHHHHh-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCC-cccchhcCh
Confidence 4444443333 3455432 22233566666666667788889999998754 356666675
No 100
>PLN02776 prenyltransferase
Probab=52.76 E-value=1.7e+02 Score=30.01 Aligned_cols=34 Identities=3% Similarity=-0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHCCC-Cccccccc
Q 014998 228 ALYFWQIPHFMALAYLCRNDYAAGGY-RMISLADA 261 (414)
Q Consensus 228 ~~~lw~~~h~~~~a~~D~edD~~aG~-ktlav~~G 261 (414)
..++-..+--..+.+.|+|-|++... +--|+.-|
T Consensus 37 g~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsG 71 (341)
T PLN02776 37 GTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSG 71 (341)
T ss_pred HHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCC
Confidence 33444444445677899999977544 45555554
No 101
>KOG3146 consensus Dolichyl pyrophosphate phosphatase and related acid phosphatases [Lipid transport and metabolism]
Probab=50.09 E-value=78 Score=30.43 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=23.6
Q ss_pred HHhcC--CCcccchhhhHhhhhcccccchhhhhccCCC
Q 014998 183 FVYTP--LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV 218 (414)
Q Consensus 183 ~iYt~--lKr~t~~nv~vG~~~Galp~l~G~~A~~g~~ 218 (414)
+.|+- +|..|.-++++|+++|++- -.-|....|.+
T Consensus 143 v~~sRVyl~yHt~sQVv~G~ivG~l~-g~~Wf~~v~sl 179 (228)
T KOG3146|consen 143 VCYSRVYLKYHTLSQVVVGAIVGGLV-GILWFYLVNSL 179 (228)
T ss_pred HHHHHHHHHhccHHHHHHHHHhhhhH-HHHHHHHHHHH
Confidence 46774 8888888999999888433 33455555544
No 102
>PRK10484 putative transporter; Provisional
Probab=48.66 E-value=3.7e+02 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.065 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhcccccc
Q 014998 108 MMVAASANSLNQLFEIS 124 (414)
Q Consensus 108 ~l~~aa~~~iND~~D~e 124 (414)
.+..+++...||++.+-
T Consensus 347 ~l~s~st~~t~Diy~~~ 363 (523)
T PRK10484 347 FLNSASTLFSLDIYKPI 363 (523)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33445777789998653
No 103
>PF11674 DUF3270: Protein of unknown function (DUF3270); InterPro: IPR021688 This family of proteins with unknown function appears to be restricted to Streptococcus.
Probab=43.36 E-value=1.1e+02 Score=25.44 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Q 014998 270 ALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAIS 306 (414)
Q Consensus 270 ~~~~~l~lv~ls~l~~~~gl~~~~y~~~a~~~~~~il 306 (414)
+..+++..+.++++....++++++=+..+.++++.+.
T Consensus 45 IA~FcI~tvlfsFvfLs~kl~t~~Af~~Ai~~Sl~~~ 81 (90)
T PF11674_consen 45 IAFFCIFTVLFSFVFLSLKLNTFWAFPLAILISLAIT 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5667787888888887888865553334555554433
No 104
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=41.21 E-value=22 Score=38.07 Aligned_cols=98 Identities=15% Similarity=0.171 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 014998 102 WTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILY 181 (414)
Q Consensus 102 l~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly 181 (414)
+...+..++..++-.-+|++++-+|+... .++++--+|+..--+.+.+..+.+.--... .++--+++.++..+.+-
T Consensus 357 LstaaGL~l~iasavsHDiY~~vik~~as--e~~~v~vaRi~~v~~~vva~~lgi~~~gnV-aflVa~AF~lAaSa~fP- 432 (529)
T COG4147 357 LSTAAGLLLVIASAVSHDLYAMVIKKGAT--EKKEVRVARIAVVILGVVAILLGILPPGNV-AFLVALAFALAASANFP- 432 (529)
T ss_pred HHHHhhHHHHHHHHHHhHHHHHHhCCCCC--ccceehhHHHHHHHHHHHHHHheecCCccH-HHHHHHHHHHHHHcccc-
Confidence 33455566667778889999988887633 455554444433322222222221100000 01222344444444444
Q ss_pred HHHhcC-CCcccchhhhHhhhhc
Q 014998 182 AFVYTP-LKQIHPVNTWVGAIVG 203 (414)
Q Consensus 182 ~~iYt~-lKr~t~~nv~vG~~~G 203 (414)
+++|+. .||.+-..-+.|...|
T Consensus 433 vivlglfWKr~n~~GAi~G~~~G 455 (529)
T COG4147 433 VIVLGLFWKRLNTAGAIAGMLLG 455 (529)
T ss_pred hhhHHHHHhhccHHhHHHHHHHH
Confidence 456776 7887655555565554
No 105
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=39.93 E-value=1.3e+02 Score=27.51 Aligned_cols=26 Identities=12% Similarity=0.067 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccc
Q 014998 96 DLAGLCWTCTGTMMVAASANSLNQLF 121 (414)
Q Consensus 96 ~~~~lll~~lg~~l~~aa~~~iND~~ 121 (414)
+....++..++..+.-+.++++++|.
T Consensus 26 ~~~~i~~~Gla~~vA~a~Sma~GeYv 51 (169)
T TIGR00267 26 DNYVIILAGLGGGVANGMSNAFGAFT 51 (169)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677888888888999999998
No 106
>COG4854 Predicted membrane protein [Function unknown]
Probab=36.51 E-value=14 Score=31.84 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=32.5
Q ss_pred cccccccccCCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHH----HHH--HH-HHHHHHHHHHhcC
Q 014998 120 LFEISNDAKMKRTMRRPL-PSGRISVRHAVTWASSVGVAGTALLAWKANML----TAG--LA-ASNLILYAFVYTP 187 (414)
Q Consensus 120 ~~D~eiD~~~~RT~~RPL-psG~IS~~~Al~~~~~l~~~gl~ll~~~~n~~----~~~--l~-l~~l~ly~~iYt~ 187 (414)
++-+..|++.+ ..|.+ .|.+-|.+..-.+.+...+.|.+++. +-||. .+. ++ +..+++|..+|.+
T Consensus 47 l~k~Rv~~vvE--DER~lrvse~aSr~TiqV~~is~Al~gavl~a-~knP~~~~a~~al~~A~ca~ivLy~~fY~Y 119 (126)
T COG4854 47 LVKRRVDEVVE--DERTLRVSERASRRTIQVFSISAALGGAVLLA-LKNPLHTNAAFALEFAVCAVIVLYLAFYMY 119 (126)
T ss_pred HHHHHHHHHhh--hHHHHHHHHhhhheeEEEEEehHHHHHHHHHH-hcCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665 34444 33344555555556655666666654 44442 111 11 2234456667765
No 107
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=35.99 E-value=1.8e+02 Score=30.80 Aligned_cols=76 Identities=20% Similarity=0.268 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHhcC-CCcc---cch-h--hhHhhhhc-ccccc
Q 014998 141 RISVRHAVTWASSVGVAGTALLAWKANM----LTAGLAASNLILYAFVYTP-LKQI---HPV-N--TWVGAIVG-AIPPL 208 (414)
Q Consensus 141 ~IS~~~Al~~~~~l~~~gl~ll~~~~n~----~~~~l~l~~l~ly~~iYt~-lKr~---t~~-n--v~vG~~~G-alp~l 208 (414)
++++...+.+..+..++-++...+.-|. ....+++++-..|=.+|+. +|+. +-. . ++++++-| .+|++
T Consensus 298 ~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 298 RIKPEKYLAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLGEHTSVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccCccccccceeeeeheecchHHHHH
Confidence 4556677766654333332222211121 1223444444444456665 4443 322 1 33333333 36788
Q ss_pred hhhhhccC
Q 014998 209 LGWTAAVG 216 (414)
Q Consensus 209 ~G~~A~~g 216 (414)
.||.+-..
T Consensus 378 ~G~i~d~~ 385 (422)
T COG0738 378 QGVIADMF 385 (422)
T ss_pred HHHHHHhh
Confidence 99877543
No 108
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=35.54 E-value=5.3e+02 Score=26.84 Aligned_cols=18 Identities=6% Similarity=0.349 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhhccccc
Q 014998 106 GTMMVAASANSLNQLFEI 123 (414)
Q Consensus 106 g~~l~~aa~~~iND~~D~ 123 (414)
+..++.+--.++|++++.
T Consensus 113 a~~~~~~ie~a~N~Iw~v 130 (412)
T PRK04214 113 LLILLHTIEQTFNRIWRV 130 (412)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 334556667789999874
No 109
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=35.16 E-value=4.8e+02 Score=26.26 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhhccccccccccCCCCCCCCccCCCC
Q 014998 106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142 (414)
Q Consensus 106 g~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~I 142 (414)
+.++..++=.++.++.|+|.|++..- +.=|+--|.=
T Consensus 180 ~~~~~~~g~DiiYa~qD~e~D~~~Gl-~Slpv~fG~~ 215 (300)
T PRK12876 180 SFGMIIAANDIIYAIQDLEFDRKEGL-FSIPARFGEK 215 (300)
T ss_pred HHHHHHHHHHHHHHHcCHhhHHHcCC-ccchHHHCch
Confidence 33334444556777999999997652 2444444544
No 110
>COG4125 Predicted membrane protein [Function unknown]
Probab=33.56 E-value=1.6e+02 Score=26.45 Aligned_cols=55 Identities=27% Similarity=0.293 Sum_probs=29.2
Q ss_pred HHHHHHHhhccccccccccCCCCC-CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Q 014998 110 VAASANSLNQLFEISNDAKMKRTM-RRPLPSGRISVRHAVTWASSVGVAGTALLAWKAN 167 (414)
Q Consensus 110 ~~aa~~~iND~~D~eiD~~~~RT~-~RPLpsG~IS~~~Al~~~~~l~~~gl~ll~~~~n 167 (414)
.+.-++++|-+|..-+|+.++|.. .|. =++-..+|+.|=..+.+.++-+.++.+|
T Consensus 49 ~atvAm~WN~vyN~lFd~~~rr~~~~rT---~~vRv~HAv~FE~gliv~lvP~iAw~L~ 104 (149)
T COG4125 49 SATVAMIWNFVYNLLFDRAERRMGTRRT---LAVRVAHAVGFELGLIVILVPLIAWWLG 104 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHhhHHHHhhHHHHHHHH
Confidence 344566777777777777766532 111 1233456666655555555433333444
No 111
>PF15111 TMEM101: TMEM101 protein family
Probab=33.48 E-value=4.4e+02 Score=25.87 Aligned_cols=19 Identities=11% Similarity=-0.012 Sum_probs=16.4
Q ss_pred HHHhhchHHHHHCCCCccc
Q 014998 239 ALAYLCRNDYAAGGYRMIS 257 (414)
Q Consensus 239 ~~a~~D~edD~~aG~ktla 257 (414)
++.++.-++||++=++.+|
T Consensus 151 Ay~L~~S~Edr~A~l~hip 169 (251)
T PF15111_consen 151 AYSLQHSKEDRLAYLNHIP 169 (251)
T ss_pred HHHHHcCHHHHHHHHhhCC
Confidence 5678889999999998888
No 112
>PLN02294 cytochrome c oxidase subunit Vb
Probab=31.78 E-value=39 Score=31.34 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=11.7
Q ss_pred hccccccccccCCCCCCCCc
Q 014998 118 NQLFEISNDAKMKRTMRRPL 137 (414)
Q Consensus 118 ND~~D~eiD~~~~RT~~RPL 137 (414)
||+||.+..+-..=|+..|+
T Consensus 88 ~D~Fd~~~~~gp~GTke~P~ 107 (174)
T PLN02294 88 RKLLDIDFPEGPFGTKEAPA 107 (174)
T ss_pred CCccccccccCCCCCccCCc
Confidence 78888655433234566665
No 113
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=31.70 E-value=5.6e+02 Score=25.93 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHH
Q 014998 137 LPSGRISVRHAVTWASSVGVAGTAL 161 (414)
Q Consensus 137 LpsG~IS~~~Al~~~~~l~~~gl~l 161 (414)
+-+|.+++++|+.++.++.++|.++
T Consensus 14 Vgs~al~~~~A~ila~i~~~lGa~l 38 (326)
T PF01384_consen 14 VGSRALTPRQALILAAIFNFLGALL 38 (326)
T ss_pred HhcCccCHHHHHHHHHHHHHhHHHH
Confidence 4578999999999999998888765
No 114
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=30.93 E-value=27 Score=18.15 Aligned_cols=9 Identities=56% Similarity=1.320 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 014998 405 PFLPAPSYA 413 (414)
Q Consensus 405 ~~~~~~~~~ 413 (414)
||-|.|+|.
T Consensus 3 pfw~ppiyp 11 (12)
T PF08248_consen 3 PFWPPPIYP 11 (12)
T ss_pred ccCCCCccc
Confidence 788999884
No 115
>PLN02878 homogentisate phytyltransferase
Probab=28.09 E-value=6.2e+02 Score=25.33 Aligned_cols=39 Identities=5% Similarity=0.052 Sum_probs=24.8
Q ss_pred HHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHH
Q 014998 110 VAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWAS 152 (414)
Q Consensus 110 ~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~ 152 (414)
...+-..+||+-|.|=|++..++ .=|+-=| .+.+..++.
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~-Tlpv~lG---~~~~~~i~~ 206 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIR-SFSVRLG---QKRVFWLCV 206 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCc-eechhhC---hHHHHHHHH
Confidence 33455699999999999988643 4444334 444444433
No 116
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=27.50 E-value=3.7e+02 Score=28.40 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=10.5
Q ss_pred HHHHHHHHhhccccc
Q 014998 109 MVAASANSLNQLFEI 123 (414)
Q Consensus 109 l~~aa~~~iND~~D~ 123 (414)
+..+++...||++++
T Consensus 340 l~~~ss~~~~Di~~~ 354 (483)
T PRK09442 340 LLQSSSTIIKDLYLN 354 (483)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344566678999976
No 117
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=27.49 E-value=8.1e+02 Score=28.67 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=35.6
Q ss_pred cchhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-CCCCcc-ccccchhhHHHHHHHHHHHHHHHHHHHH
Q 014998 207 PLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAA-GGYRMI-SLADASGQRTALVALRNCLYLVPLGYLA 284 (414)
Q Consensus 207 ~l~G~~A~~g~~~~~~~lL~~~~~lw~~~h~~~~a~~D~edD~~-aG~ktl-av~~G~G~~ta~~~~~~~l~lv~ls~l~ 284 (414)
.+.|....+..++... ++.+...+-....+-++-+...+..++ .|.... ++..+ ++.+.+-++..++ ...++++|
T Consensus 903 ~~~~l~i~g~~l~~~s-~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a-~~~RlRPIlmTtl-Tti~G~lP 979 (1021)
T PF00873_consen 903 VLLGLFITGQPLSFMS-LIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEA-ARSRLRPILMTTL-TTILGMLP 979 (1021)
T ss_dssp HHHHHHHTTBEBSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHhhccccccccc-eehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHH-HHHHHHHHHHHHh-hhhccccc
Confidence 4445444444466554 333333333344443333444455666 666433 33333 2333333333333 34456666
Q ss_pred HHhhc
Q 014998 285 YDWGV 289 (414)
Q Consensus 285 ~~~gl 289 (414)
..++.
T Consensus 980 la~~~ 984 (1021)
T PF00873_consen 980 LALGI 984 (1021)
T ss_dssp HHTT-
T ss_pred ccccc
Confidence 66554
No 118
>PRK09597 lipid A 1-phosphatase; Reviewed
Probab=25.96 E-value=5.7e+02 Score=24.15 Aligned_cols=99 Identities=14% Similarity=0.136 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCH---HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 014998 96 DLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV---RHAVTWASSVGVAGTALLAWKANMLTAG 172 (414)
Q Consensus 96 ~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~---~~Al~~~~~l~~~gl~ll~~~~n~~~~~ 172 (414)
++......+++........+.+...+||.. -...|...||- .+.-|- ..+..+... .+ +.. ..++....
T Consensus 75 d~~g~~~l~~al~~~~ll~~~LK~~~~R~~-~~~~r~~~~p~-~~~~SFPSGHt~~af~~a----~~-l~~-~~~~~~~~ 146 (190)
T PRK09597 75 DAIGLFQVANASIATTLLTHTTKRALNHVT-INDQRLGERPY-GGNFNMPSGHSSMVGLAV----AF-LMR-RYSFKKYW 146 (190)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccccCCC-CCCCCCCcHHHHHHHHHH----HH-HHH-HHchhHHH
Confidence 344455555666666667778888888851 11234444442 222332 222222111 11 111 11122112
Q ss_pred HHHHHHHHHHHHhcC--CCcccchhhhHhhhhcc
Q 014998 173 LAASNLILYAFVYTP--LKQIHPVNTWVGAIVGA 204 (414)
Q Consensus 173 l~l~~l~ly~~iYt~--lKr~t~~nv~vG~~~Ga 204 (414)
+++. +.+ .+.|+- +....+.+++.|.+.|.
T Consensus 147 ~~l~-lal-lVg~SRVYLGvHyPsDVLaG~liGi 178 (190)
T PRK09597 147 WLLP-LIP-LTMLARIYLDMHTIGAVLAGLGVGM 178 (190)
T ss_pred HHHH-HHH-HHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 1111 212 345664 77777779999988873
No 119
>COG2832 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.82 E-value=1.6e+02 Score=25.78 Aligned_cols=48 Identities=17% Similarity=-0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCccc
Q 014998 144 VRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIH 192 (414)
Q Consensus 144 ~~~Al~~~~~l~~~gl~ll~~~~n~~~~~l~l~~l~ly~~iYt~lKr~t 192 (414)
++++...++.+..+++.+.+++.++...-.+++..++ ...+-.+||++
T Consensus 70 ~~~aK~~ai~~i~~~~~~s~~~v~~~~~r~~l~~v~l-~~~~~~~~~~P 117 (119)
T COG2832 70 PRKAKIKAILLITLSIGISFYFVPVLWVRVALVAVIL-FGTAYIFKRRP 117 (119)
T ss_pred ChhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-HHHhheeEecC
Confidence 3456677777777888888777776666666555554 33344456653
No 120
>PRK11383 hypothetical protein; Provisional
Probab=23.01 E-value=4.2e+02 Score=23.91 Aligned_cols=23 Identities=17% Similarity=-0.009 Sum_probs=15.7
Q ss_pred HHHHhhchHHHHHCCCCcccccc
Q 014998 238 MALAYLCRNDYAAGGYRMISLAD 260 (414)
Q Consensus 238 ~~~a~~D~edD~~aG~ktlav~~ 260 (414)
-.++.|.-..|+..|+.+..+-.
T Consensus 54 ~avs~QK~vRD~~egi~vt~~f~ 76 (145)
T PRK11383 54 SAASYQKTVRDKYEGIPTTSIYY 76 (145)
T ss_pred HHHHHHHHHhhcccCCChhHHHH
Confidence 35667777778878887666544
No 121
>PF14256 YwiC: YwiC-like protein
Probab=20.24 E-value=5.9e+02 Score=22.24 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHH
Q 014998 76 SMLVVATSGTGF 87 (414)
Q Consensus 76 ~~~~~~~~~~G~ 87 (414)
|.+.+.|.+.|.
T Consensus 8 W~Ml~~P~l~G~ 19 (129)
T PF14256_consen 8 WAMLLVPFLLGM 19 (129)
T ss_pred HHHHHHHHHHHH
Confidence 677888999998
No 122
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.11 E-value=5.1e+02 Score=21.70 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 014998 171 AGLAASNLILYAFVYTP 187 (414)
Q Consensus 171 ~~l~l~~l~ly~~iYt~ 187 (414)
++..++++++ .++|.+
T Consensus 38 lIs~viGilL-G~~~~~ 53 (93)
T PF06946_consen 38 LISVVIGILL-GAAAYP 53 (93)
T ss_pred HHHHHHHHHH-HHHhhh
Confidence 3333333433 334433
Done!