Query 014998
Match_columns 414
No_of_seqs 208 out of 1865
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 04:52:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014998.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014998hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v4ea_ a.128.1.1 (A:) Octopre 12.9 3.1E+02 0.023 23.1 8.5 77 64-146 148-224 (280)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 11.2 2.7E+02 0.02 23.6 7.2 44 321-364 52-98 (248)
3 d1kqfb2 f.23.22.1 (B:246-290) 6.1 2.4E+02 0.018 17.8 3.3 25 331-355 19-43 (45)
4 d1iwga8 f.35.1.1 (A:513-566,A: 4.6 7.6E+02 0.055 19.5 11.4 11 117-127 4-14 (222)
5 d2iuba2 f.17.3.1 (A:286-349) M 4.6 4E+02 0.029 17.1 4.0 20 270-289 9-28 (64)
6 d1diha2 d.81.1.3 (A:131-240) D 4.0 2.2E+02 0.016 20.8 2.4 28 109-136 9-37 (110)
7 d1rtra_ a.128.1.1 (A:) Farnesy 3.3 3.9E+02 0.029 22.4 3.7 57 101-160 64-120 (290)
8 d1neea2 g.59.1.1 (A:99-135) Zi 3.3 2.4E+02 0.018 17.0 1.5 26 16-41 10-35 (37)
9 d1rqja_ a.128.1.1 (A:) Farnesy 3.2 7.9E+02 0.058 20.3 5.8 62 97-161 63-124 (299)
10 d2csha2 g.37.1.1 (A:61-104) Zi 3.1 1.9E+02 0.014 17.9 0.9 9 1-9 16-24 (44)
No 1
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=12.95 E-value=3.1e+02 Score=23.08 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=48.1
Q ss_pred HHHHHhHhhhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCC
Q 014998 64 GRCYWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRIS 143 (414)
Q Consensus 64 lk~yl~L~RP~~~~~~~~~~~~G~llA~~~~~~~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS 143 (414)
...|++.++-++..+...++.+|.+++....-++.. +|. -+-.+-.+.||+.|..-|....++...=|-.|+.|
T Consensus 148 ~~~y~~~i~~KT~~lf~~~~~~ga~l~g~~~~~l~~-----~g~-~lG~afQi~DD~ld~~~~~~~GK~~g~Dl~~gK~T 221 (280)
T d1v4ea_ 148 KEEYLRIVEGKSGALFGLALQLPALLEGELGEDLYN-----LGV-TIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVAS 221 (280)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCHHHHH-----HHH-HHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCC
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHccccHHHHHH-----HHH-HHHHHHHHHHhhccccchhhhcccchhhHhCCCcc
Confidence 467888988888877778888888887532212222 122 22335678999999754543322223457778888
Q ss_pred HHH
Q 014998 144 VRH 146 (414)
Q Consensus 144 ~~~ 146 (414)
..-
T Consensus 222 ~p~ 224 (280)
T d1v4ea_ 222 FPL 224 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=11.20 E-value=2.7e+02 Score=23.59 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=25.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH---HhhcccCCCccchhhhhhhccC
Q 014998 321 ARKMFHASLLYLPVFMSGLLFH---RLTDNQQSLPEEDSEKIVELSS 364 (414)
Q Consensus 321 a~~~F~~s~~~l~~~l~~~li~---~~~~~~~~~~~~~~~~~~~~~~ 364 (414)
..|...-+...+.++.+.-++- --.-|...++..+|||.-+.+-
T Consensus 52 p~kyi~PG~~~l~~Fvi~Pi~yT~~iaFTNy~tgh~ltk~~Ai~~l~ 98 (248)
T d2r6gf1 52 AWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTFERAQEVLL 98 (248)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHHGGGBCCSSTTCBCHHHHHHHHT
T ss_pred ceehhhhHHHHHHHHHHHhheeEEEEEEEEcCCCccccHHHHHHHHH
Confidence 4556555555554444443332 2345667788888888766554
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.07 E-value=2.4e+02 Score=17.76 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhcccCCCccch
Q 014998 331 YLPVFMSGLLFHRLTDNQQSLPEED 355 (414)
Q Consensus 331 ~l~~~l~~~li~~~~~~~~~~~~~~ 355 (414)
-+....++.++|++.--.++-+|++
T Consensus 19 ~~~~~~~~~~fHYv~vGPn~v~ee~ 43 (45)
T d1kqfb2 19 GFIATFAGLIFHYIGIGPNKEVDDD 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHCCBCSCSST
T ss_pred HHHHHHHHHHHhhheeCCCcccccc
Confidence 3345556677887776665444443
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.60 E-value=7.6e+02 Score=19.50 Aligned_cols=11 Identities=36% Similarity=0.634 Sum_probs=6.6
Q ss_pred hhccccccccc
Q 014998 117 LNQLFEISNDA 127 (414)
Q Consensus 117 iND~~D~eiD~ 127 (414)
+|+-+|+..|+
T Consensus 4 fNr~f~~~t~~ 14 (222)
T d1iwga8 4 FNRMFEKSTHH 14 (222)
T ss_dssp HHHHHHHHHTH
T ss_pred hhHHHHhhhHH
Confidence 56666665554
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.59 E-value=4e+02 Score=17.12 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 014998 270 ALRNCLYLVPLGYLAYDWGV 289 (414)
Q Consensus 270 ~~~~~l~lv~ls~l~~~~gl 289 (414)
....+...+|.+++.-.+|+
T Consensus 9 lT~it~iflP~t~i~gifGM 28 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 34445556667766544554
No 6
>d1diha2 d.81.1.3 (A:131-240) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}
Probab=3.98 E-value=2.2e+02 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcccccc-ccccCCCCCCCC
Q 014998 109 MVAASANSLNQLFEIS-NDAKMKRTMRRP 136 (414)
Q Consensus 109 l~~aa~~~iND~~D~e-iD~~~~RT~~RP 136 (414)
+..-++-.+|+.+|.+ +|.+.+++.+-|
T Consensus 9 l~~~~a~~l~~~~dieI~E~HH~~K~DaP 37 (110)
T d1diha2 9 LLEKAAKVMGDYTDIEIIEAHHRHKVDAP 37 (110)
T ss_dssp HHHHHHHHHTTTSEEEEEEEECTTCCSSS
T ss_pred HHHHHHHhcccccChhhHHHHHhcCCCCC
Confidence 4445666788888987 566666555554
No 7
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=3.28 E-value=3.9e+02 Score=22.42 Aligned_cols=57 Identities=11% Similarity=-0.014 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHH
Q 014998 101 CWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTA 160 (414)
Q Consensus 101 ll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~ 160 (414)
.-+..+.=+++++.-+..|+.|.|-|.. | +.+|-...+.....|+..+-.+...++.
T Consensus 64 ~~~A~avEllH~asLIHDDI~d~D~~~~--R-Rg~pt~~~~~g~~~Ail~Gd~l~~~a~~ 120 (290)
T d1rtra_ 64 MKSAIALEMIHTYSLIHDDLPAMDNDDY--R-RGKLTNHKVYGEWTAILAGDALLTKAFE 120 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSE--E-TTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhhh--h-hcchhhHHHhhhhHHHHcCcchhHHHHH
Confidence 3445667789999999999998776653 2 3566655555666666555544444443
No 8
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.26 E-value=2.4e+02 Score=16.97 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=19.3
Q ss_pred CCCCCCCcccccccccccccCCcCCC
Q 014998 16 SNRSQHSSTELGFLVNRKCHGVRSSS 41 (414)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (414)
||-...-..++-.+.+.||+..|+..
T Consensus 10 pDT~l~ke~R~~~l~C~aCGa~r~V~ 35 (37)
T d1neea2 10 PDTRIIREGRISLLKCEACGAKAPLK 35 (37)
T ss_dssp CSSCCEEETTTTEEECSTTSCCCCSC
T ss_pred CCCEEEEcCCEEEEEeccCCCCcccc
Confidence 45555556678888899999888763
No 9
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=3.18 E-value=7.9e+02 Score=20.32 Aligned_cols=62 Identities=11% Similarity=0.046 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHH
Q 014998 97 LAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL 161 (414)
Q Consensus 97 ~~~lll~~lg~~l~~aa~~~iND~~D~eiD~~~~RT~~RPLpsG~IS~~~Al~~~~~l~~~gl~l 161 (414)
.....-+..+.=++++++-+..|+.|.|.|.. | +.+|=.-.+.....|+..+-.+...++-+
T Consensus 63 ~~~~~~~A~aiEllH~asLiHDDI~d~d~~~~--R-RG~pt~h~~~G~~~AIl~Gd~l~~~a~~~ 124 (299)
T d1rqja_ 63 TNTLDAPAAAVECIHAYSLIHDDLPAMDDDDL--R-RGLPTCHVKFGEANAILAGDALQTLAFSI 124 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTTCCCE--E-TTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHccchhhhhhhc--c-cccccceeeeCcchhhhhcchHHHHHHHH
Confidence 34455556777899999999999999776542 2 34555545555666666665555444443
No 10
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.05 E-value=1.9e+02 Score=17.90 Aligned_cols=9 Identities=44% Similarity=1.029 Sum_probs=6.2
Q ss_pred CccchhhHH
Q 014998 1 MWRNVVVRR 9 (414)
Q Consensus 1 ~~~~~~~~~ 9 (414)
|||.+.-|-
T Consensus 16 MWRDSF~RH 24 (44)
T d2csha2 16 MWRDSFHRH 24 (44)
T ss_dssp SCHHHHHHH
T ss_pred hhHHHHHHh
Confidence 888887443
Done!