RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014998
(414 letters)
>gnl|CDD|215415 PLN02776, PLN02776, prenyltransferase.
Length = 341
Score = 543 bits (1402), Expect = 0.0
Identities = 232/344 (67%), Positives = 270/344 (78%), Gaps = 5/344 (1%)
Query: 70 LSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKM 129
LSKARLS LVVATSG GF LGSG IDL GL WTC GTM+ AASAN+LNQ+FE+ ND+KM
Sbjct: 1 LSKARLSALVVATSGAGFVLGSGEAIDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKM 60
Query: 130 KRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLK 189
KRTMRRPLPSGRISV HAV WA VG AG ALLA+K NMLTAGL A N++LYAFVYTPLK
Sbjct: 61 KRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTPLK 120
Query: 190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYA 249
QIHP NTWVGA+VGAIPPL+GW AA G + M+L AALYFWQ+PHFMALAY+CR+DYA
Sbjct: 121 QIHPANTWVGAVVGAIPPLMGWAAASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYA 180
Query: 250 AGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAA 309
AGGYRM+SLADA+G+RTALVALRNCLYL PLG+LAYDWGVTS F LE++L+T ++A+A
Sbjct: 181 AGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASA 240
Query: 310 FSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKIVELSSSSETV 369
SFYR+ T ARKMFH SLLYLP FM+ LL HR+ ++ Q D + EL+ S +
Sbjct: 241 ASFYREPTNANARKMFHGSLLYLPAFMALLLLHRVPNDNQ----VDLRQESELTESLDGR 296
Query: 370 PVESEDMNRKKKLSYYSSLGRQVRAPVAYASVAPFPFLPAPSYA 413
E+ + ++ S + GR R PVAYAS APFPFLPAPSYA
Sbjct: 297 AKGREETSLEQV-SKRRAPGRVARPPVAYASAAPFPFLPAPSYA 339
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 289 bits (743), Expect = 1e-96
Identities = 106/281 (37%), Positives = 148/281 (52%), Gaps = 4/281 (1%)
Query: 65 RCYWELSKARLSMLVVATSGTGFALGSGST-IDLAGLCWTCTGTMMVAASANSLNQLFEI 123
+ Y +L+K R+ L++ T+ G L G ++ L T GT + AASAN+ N +
Sbjct: 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAAASANAFNMYIDR 60
Query: 124 SNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAF 183
D KMKRT RPL +GRIS R A+ + +GV G A+LA N L A L + Y
Sbjct: 61 DIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVI 120
Query: 184 VYT-PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAY 242
VYT LK+ P NT +G GA+PPL+GW A G +SL +L A ++ WQ PHF ALA
Sbjct: 121 VYTIWLKRRTPQNTVIGGFAGAVPPLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALAL 180
Query: 243 LCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLIT 302
++DY A G M+ + +AL L+P+ L G T + + ++L+
Sbjct: 181 KYKDDYRAAGIPMLPVVKGERITKRQIALY-TAALLPVSLLLAFLGGTGWLYLIVATLLG 239
Query: 303 LAISAAAFSFYRDRTTQ-KARKMFHASLLYLPVFMSGLLFH 342
AF FYRD T + KARK+F SL+YL + LL
Sbjct: 240 ALFLYLAFKFYRDPTDRKKARKLFKFSLIYLALLFVALLID 280
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 224 bits (572), Expect = 2e-70
Identities = 95/279 (34%), Positives = 142/279 (50%), Gaps = 2/279 (0%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y +L+K R+ L++ T+ G L +I+ L T G + A A + N + D
Sbjct: 21 YLQLTKPRVISLLLITAFAGMLLAPRGSINPLLLLLTLLGGALGAGGAGAFNMYIDRDID 80
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
A M+RT +RPL +G IS R A+ + +GVAG +LL + N+L A L + Y VYT
Sbjct: 81 ALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYT 140
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK+ P N +G GA+PPL+GW A G +SL ++L A ++ W PHF ALA +
Sbjct: 141 LWLKRRTPQNIVIGGFAGAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYK 200
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAI 305
+DY A G M+ + +RT L L L P+ L G + + ++L+
Sbjct: 201 DDYKAAGIPMLPVV-KGERRTKRQILLYTLALAPVSLLLALLGYVGYLYLVVATLLGAWF 259
Query: 306 SAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
A A+ YR + ARK+F S++YL + LL L
Sbjct: 260 LALAWKLYRKDDRKWARKLFKYSIIYLALLFVALLIDSL 298
>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional.
Length = 296
Score = 199 bits (509), Expect = 3e-61
Identities = 99/292 (33%), Positives = 134/292 (45%), Gaps = 28/292 (9%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y L+K R+ L + T+ G L L L T G +VA +A +LN + D
Sbjct: 13 YLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDID 72
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
AKM+RT RPL +GRIS R A+ + +GV G LL N L A L + + Y VYT
Sbjct: 73 AKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYT 132
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK+ P N +G GA+PPL+GW A G +S +IL ++ W PHF ALA +
Sbjct: 133 LWLKRRTPQNIVIGGAAGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRK 192
Query: 246 NDYAAGGYRMISLADASGQRT---------ALVALRNCLYLVPLGYLAYDWGVT----SG 292
+DYAA G M+ + + T LVA+ L V LG + V
Sbjct: 193 DDYAAAGIPMLPVV-KGIRVTKRQILLYTVLLVAV--SLLPVLLGMAGLLYLVVALLLGA 249
Query: 293 WFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRL 344
WF A+ YR + ARK+F S+ YL + LL L
Sbjct: 250 WFLYY-----------AWRLYRKDDRKWARKLFRYSINYLTLLFVALLVDHL 290
>gnl|CDD|184001 PRK13362, PRK13362, protoheme IX farnesyltransferase; Provisional.
Length = 306
Score = 148 bits (375), Expect = 2e-41
Identities = 86/270 (31%), Positives = 127/270 (47%), Gaps = 6/270 (2%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y +++K + V + GF L S +D + G +V AS +LN + D
Sbjct: 16 YIQVTKPGIIFGNVISVAGGFFLASKGHVDPVLMLAAVIGLSLVVASGCALNNCIDRDID 75
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
AKM+RT R +G IS+ A+ + ++GVAG LLA N L A AA ++Y VY+
Sbjct: 76 AKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYS 135
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK+ T VG++ GA+PP++G+ A G +IL WQ+PH A+A
Sbjct: 136 LYLKRNSVYGTLVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRF 195
Query: 246 NDYAAGGYRMISLADASGQR-TALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA 304
NDYAA G + L A G T L + L + L G T + ++ +L
Sbjct: 196 NDYAAAGIPV--LPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAVAAATSLW 253
Query: 305 ISAAAFSFYRDRT--TQKARKMFHASLLYL 332
A A YR T AR++F S+L +
Sbjct: 254 WLAMALKGYRHAVDDTVWARQLFGFSILTI 283
>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed.
Length = 279
Score = 117 bits (296), Expect = 2e-30
Identities = 75/279 (26%), Positives = 117/279 (41%), Gaps = 7/279 (2%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
Y +L K R+ L+ + G+ L + + L G + + + + N E D
Sbjct: 5 YLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDID 64
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
M RT +RP P G ++ + A+ S++ GTAL LTA A YA VYT
Sbjct: 65 KVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYT 124
Query: 187 P-LKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR 245
LK +N +G G L G+ + G + L ++L +Y W H +LA R
Sbjct: 125 IWLKPRTWLNIVIGGFAGNAAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYR 184
Query: 246 NDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDW--GVTSGWFCLESSLITL 303
DY G M+ +++ N L ++P L Y + G+ S +
Sbjct: 185 EDYRRAGVPMLPAVVGEKTSVRAISISNAL-MIPYILLLYLYYIGLIGLILVAILSAALM 243
Query: 304 AISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFH 342
A S A + T ++A KMF AS YL +F+ L+
Sbjct: 244 ATSIRA---LLNPTKEEAWKMFKASSPYLALFLLALIIS 279
>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family.
Length = 259
Score = 93.3 bits (232), Expect = 1e-21
Identities = 64/259 (24%), Positives = 100/259 (38%), Gaps = 7/259 (2%)
Query: 77 MLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRP 136
L + G AL +G +DL L +++ A+ N LN F+ DA RP
Sbjct: 2 PLALLPVLAGLALAAGGVLDLLLLLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRP 61
Query: 137 LPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTP---LKQIHP 193
LPSGRIS R A+ ++ + G LLA L L L+L +Y+P LK+
Sbjct: 62 LPSGRISPREALLLGLALLLLG-LLLALLLGPLLLLLGLLGLLLG-LLYSPPLRLKRRPL 119
Query: 194 VNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCRNDYAAGGY 253
+ V + + LLG A G + ++L ++ + + G
Sbjct: 120 LGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGI 179
Query: 254 RMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFY 313
R + + G++ AL L L L + L L+ LA+ AA
Sbjct: 180 RTLPV--RLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALLVAARLLR 237
Query: 314 RDRTTQKARKMFHASLLYL 332
R + AR +LL+
Sbjct: 238 RRNPEEPARTFLFIALLFG 256
>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related
prenyltransferases [Coenzyme metabolism].
Length = 289
Score = 73.5 bits (181), Expect = 1e-14
Identities = 66/281 (23%), Positives = 105/281 (37%), Gaps = 17/281 (6%)
Query: 67 YWELSKARLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISND 126
L + ++L++ + G L + L L + ++ +N L + D
Sbjct: 16 LLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFFLARSAGYVINDLADREID 75
Query: 127 AKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT 186
RT RPLPSGR+SV+ A+ A + + G LA N L L+ + L+L A Y
Sbjct: 76 RINPRTKNRPLPSGRVSVKEALLLAILLLLLG-LALALLLNPLAFLLSLAALVL-ALAYP 133
Query: 187 PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLCR- 245
LK+ + V + + L G A G + L +L A W + +
Sbjct: 134 FLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILW----TLGYDIIYAI 189
Query: 246 ----NDYAAGGYRMISLADASGQRTAL-VALRNCLYLVPLGYLAYDWGVTSGWFCLESSL 300
D AG + SL G + AL +AL L L L G+ + L +
Sbjct: 190 QDIEGDRKAG---LKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLV 246
Query: 301 ITLAISAAAFSFYRDRTTQKARKMFHA-SLLYLPVFMSGLL 340
L + R +F LL L +F+ +L
Sbjct: 247 AALLLLYQIL-IVDVRDPPACFALFDVNLLLGLLLFIGLIL 286
>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed.
Length = 284
Score = 58.6 bits (142), Expect = 1e-09
Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 22/212 (10%)
Query: 109 MVAAS--ANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASS---VGVAGTALLA 163
MV A A + N++ + DA+ RT R L +G +SVR A T A V + ALL
Sbjct: 48 MVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLN 107
Query: 164 WKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGM 223
L A LA + L++Y + K+ + + A+ P+ W A G S +
Sbjct: 108 PLCLAL-APLAVAPLVVYPYA----KRFTNFPHAILGLAQAVGPVGAWIAVTGTWSWPAV 162
Query: 224 ILPAALYFWQIPHFMALAYLCRN---DYAAGGYRMISLADASGQRTALVALRNCLYLVPL 280
+L A+ W I F L Y C++ D G + S+ G R AL A R +
Sbjct: 163 LLGLAVGLW-IGGF-DLIYACQDAEVDRRIG---VRSVPARFGVRAALWASRVAHVVTFA 217
Query: 281 GYLAYDWGVTSGWFCLESSLITLAISAAAFSF 312
++ + V G I LAI+A AF++
Sbjct: 218 LFVWFGLAVGFGAL----WWIGLAITAGAFAY 245
>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase,
proteobacterial. This model represents a family of
integral membrane proteins that condenses
para-hydroxybenzoate with any of several
polyprenyldiphosphates. Heterologous expression studies
suggest that for, many but not all members, the activity
seen (e.g. octaprenyltransferase in E. coli) reflects
available host isoprenyl pools rather than enzyme
specificity. A fairly deep split by both clustering
(UPGMA) and phylogenetics (NJ tree) separates this group
(mostly Proteobacterial and mitochondrial), with several
characterized members, from another group (mostly
archaeal and Gram-positive bacterial) lacking
characterized members [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 281
Score = 52.3 bits (126), Expect = 1e-07
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 20/255 (7%)
Query: 67 YWELSKA-----RLSMLVVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLF 121
Y +L +A L +L A +G L L G +++ + +N ++
Sbjct: 4 YAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLYLLGLFTVGAILMRGAGCVINDIW 63
Query: 122 EISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILY 181
+ D +++RT RPL SG +SVR A+ + + + + N LT L ++L L
Sbjct: 64 DRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVA-LGVLLQLNPLTILLGVASLAL- 121
Query: 182 AFVYTPLKQIHPV-NTWVGAIVG-AIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMA 239
Y +K+I +G G +GW A G +S +L A W + +
Sbjct: 122 VATYPFMKRITYWPQLVLGLAFGWGAL--MGWAAVTGDLSTAAWVLYLANILWTLGYDTI 179
Query: 240 LAYLCRNDYAAGGYRMISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299
A + D G + S A G T LY + + LA G+ +G
Sbjct: 180 YAMQDKEDDIKIGVK--STALRFGDNTKPWLG--GLYALMILLLALA-GLIAGL----GP 230
Query: 300 LITLAISAAAFSFYR 314
+ L ++AAA R
Sbjct: 231 VYYLGLAAAALLLIR 245
>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 314
Score = 51.9 bits (125), Expect = 2e-07
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 126 DAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVY 185
DAK+ RT RPLPSG++S + A + + G A+L + N L ++L + A Y
Sbjct: 100 DAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLL-QFNWFAIALGIASLAIVA-AY 157
Query: 186 TPLKQIHPVNTWVGAIV-------GAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFM 238
+K+I TW GA L+GW A G +SL ++L A W I +
Sbjct: 158 PFMKRI----TWWPQFFLGLAFSWGA---LMGWAAHFGSLSLAAVLLYAGSIAWTIGYDT 210
Query: 239 ALAYLCRNDYAAGGYRMISLADASGQRTALVAL 271
A+ + D A G + + +T LV
Sbjct: 211 IYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF 243
>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate
polyprenyltransferase. A fairly deep split separates
this polyprenyltransferase subfamily from the set of
mitochondrial and proteobacterial 4-hydroxybenzoate
polyprenyltransferases, described in TIGR01474.
Protoheme IX farnesyltransferase (heme O synthase)
(TIGR01473) is more distantly related. Because no
species appears to have both this protein and a member
of TIGR01474, it is likely that This model represents
4-hydroxybenzoate polyprenyltransferase, a critical
enzyme of ubiquinone biosynthesis, in the Archaea,
Gram-positive bacteria, Aquifex aeolicus, the
Chlamydias, etc [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 282
Score = 50.4 bits (121), Expect = 6e-07
Identities = 54/262 (20%), Positives = 96/262 (36%), Gaps = 22/262 (8%)
Query: 85 TGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144
G L + L L + +A + N++ + + DA+ RT RPL SG IS
Sbjct: 23 AGALLAAKGLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISK 82
Query: 145 RHAVTWASSVGVAGTALL---AWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAI 201
+ A T + AL ++ N L L+ L++ Y K+ + +V
Sbjct: 83 KEARTMI----ILSLALFLSASYFLNPLAFILSPLVLLVLII-YPYTKRFTFLCHYVLGS 137
Query: 202 VGAIPPLLGWTAAVGHVSLNGM--ILPAALYFWQ-----IPHFMALAYLCRNDYAAGGYR 254
+ PL GW A +G +S + +L + FW I + D G
Sbjct: 138 TYGLAPLAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEF----DRKNG--- 190
Query: 255 MISLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLAISAAAFSFYR 314
+ S+ G + AL + + L + V +G+ L + ++ I A
Sbjct: 191 LHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYIVD 250
Query: 315 DRTTQKARKMFHASLLYLPVFM 336
K ++ F + +L +
Sbjct: 251 PGDQSKIQRAFFYANGFLSITF 272
>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 290
Score = 48.8 bits (117), Expect = 2e-06
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 106 GTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWK 165
G + +A+ +N L++ D +++RT RPL S R+SV+ + A V + A LA+
Sbjct: 54 GALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIA-IVALLCAAGLAFF 112
Query: 166 ANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMIL 225
N L+ L + + + F+Y K++ PV V AI L+ W+A GH+ L +L
Sbjct: 113 LNPLSFWLCVAAVPV-IFLYPLAKRVFPVPQLVLAIAWGFAVLISWSAVTGHLDLGTWLL 171
Query: 226 PAALYFWQI 234
AA FW +
Sbjct: 172 WAATVFWTL 180
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 47.1 bits (113), Expect = 7e-06
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 126 DAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL---YA 182
D +KRT RPL SG +S + A+ V V LL N LT L+ + L L Y
Sbjct: 70 DGHVKRTKNRPLASGAVSEKEAL-ALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYP 128
Query: 183 FV--YTPLKQIHPVNTWVGAIVG-AIPPLLGWTAAVGHVSLNGMILPAALYFWQI 234
F+ YT L Q+ +GA G IP + + A G V L +L A W +
Sbjct: 129 FMKRYTHLPQVV-----LGAAFGWGIP--MAFAAVQGSVPLEAWLLFLANILWTV 176
>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed.
Length = 276
Score = 45.0 bits (107), Expect = 3e-05
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 107 TMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKA 166
+ + N++N F+ D ++ R R P+PSG +S R A+ ++ + AG A LA+
Sbjct: 47 VFLATGAGNAINDYFDREID-RINRPDR-PIPSGAVSPRGALAFSILLFAAGVA-LAFLL 103
Query: 167 NMLTAGLAASN---LILYA--FVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLN 221
L +A N L+LYA TP N V + G+ L AAVG L
Sbjct: 104 PPLCLAIALFNSLLLVLYAETLKGTPGLG----NASVAYLTGST--FLFGGAAVGTEGLL 157
Query: 222 GMILPAALYF 231
+++ AL
Sbjct: 158 ALLVLFALAA 167
>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional.
Length = 331
Score = 45.1 bits (107), Expect = 4e-05
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 116 SLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAW-------KANM 168
S+N F++ D + T RP+PSGR+S + A+ + V + L W + M
Sbjct: 68 SVNDYFDLELDRVNEPT--RPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGM 125
Query: 169 LTAGLAASNLILYAFVYT--PLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILP 226
+ + L + A++Y+ PLK + T A VG + + +A +L I P
Sbjct: 126 VIISSILAGLFV-AYIYSAPPLKLKKNILTSAPA-VGFSYGFITFLSA---NALFSDIRP 180
Query: 227 AALYFWQIPHFMALAYLCRNDY------AAGGYRMISLADASGQR-TALVA--LRNCLYL 277
++ + FMA+A + ND+ GG + SL G + T LV+ + + ++
Sbjct: 181 EVVWLAGLNFFMAIALIIMNDFKSVEGDKEGG--LKSLTVMIGAKNTFLVSFIIIDLVFA 238
Query: 278 VPLGYLAYDWGVTSGWFCLESSLI 301
V +LA+ WG T + + L+
Sbjct: 239 V-FAWLAWSWGFTVLMYFILVGLV 261
>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed.
Length = 285
Score = 43.4 bits (103), Expect = 1e-04
Identities = 42/183 (22%), Positives = 73/183 (39%), Gaps = 12/183 (6%)
Query: 59 LIRHYGRCYWELSKARLSM-----LVVATSGTGFALGSGSTIDLAGLCWTCT-GTMMVAA 112
I Y++L RL LV + G L S S + L G++++ +
Sbjct: 2 DILMKFLAYFKLM--RLHKPIGILLVFFPTLFGLLLASHSLLPDISLLVLFIIGSVLMRS 59
Query: 113 SANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAV-TWASSVGVAGTALLAWKANMLTA 171
+ +N +F+ D + RT RPL SG +SV+ A+ + +A LL N T
Sbjct: 60 AGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILL--LLNKTTI 117
Query: 172 GLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYF 231
L+ +IL +Y +K+ + L+ + A + + ++L F
Sbjct: 118 YLSFIAVIL-IVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIF 176
Query: 232 WQI 234
W I
Sbjct: 177 WTI 179
>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate
synthase; Reviewed.
Length = 279
Score = 41.9 bits (99), Expect = 3e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 85 TGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144
G+ + S IDL G+ +V A N +N +++I D K RP+PSGRIS+
Sbjct: 24 IGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKINKP--ERPIPSGRISL 81
Query: 145 RHAVTWASS---VGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAI 201
+ A ++ + VG+ + + A L A L + L LYA I N V +
Sbjct: 82 KEAKIFSITLFIVGLILSIFINIYA-FLIALLNSILLYLYAKDLKKTGLIG--NLIVAYL 138
Query: 202 VGAI 205
G
Sbjct: 139 TGLS 142
>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed.
Length = 291
Score = 41.2 bits (97), Expect = 6e-04
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 2/150 (1%)
Query: 83 SGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRI 142
+G G L + + L W + +A N+L + DA+ RT R +P+G I
Sbjct: 27 AGIGAVLAALGLPGASQLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLI 86
Query: 143 SVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIV 202
S A+ + + AW N L L+ L + +Y+ K+ + V
Sbjct: 87 SKGSAILFI-VLSSLLMLFAAWFLNPLCLYLSPPALF-FLLLYSYCKRFTALAHVVLGFC 144
Query: 203 GAIPPLLGWTAAVGHVSLNGMILPAALYFW 232
A+ PL W A G + L ++L A+ FW
Sbjct: 145 LALAPLGAWIAIRGTIELPAILLGLAVLFW 174
>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll
synthetase. This model describes a subfamily of a large
family of polyprenyltransferases (pfam01040) that also
includes 4-hydroxybenzoate octaprenyltransferase and
protoheme IX farnesyltransferase (heme O synthase).
Members of this family are found exclusively in
photosynthetic organisms, including a single copy in
Arabidopsis thaliana [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 283
Score = 40.9 bits (96), Expect = 6e-04
Identities = 44/177 (24%), Positives = 64/177 (36%), Gaps = 16/177 (9%)
Query: 79 VVATSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLP 138
+G+ G L L G + S S+N F+ DA + +RP+P
Sbjct: 20 FCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFS-QSINDYFDRDVDAINEP--QRPIP 76
Query: 139 SGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLIL-YAFVYTPLKQIHPVNTW 197
SG IS+R + VAG + N L ++L + P+K N W
Sbjct: 77 SGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSMPPIKLKR--NGW 134
Query: 198 VG-AIVGAIPPLLGWTAAVGHV---SLNGMILPAALYFWQIPHFMALAYLCRNDYAA 250
+G VG L W A GH L + AL I A + ND+ +
Sbjct: 135 LGPPAVGLSYEGLPWMA--GHAIFAPLTWQSVVVAL----IYSLGAHGIMTLNDFKS 185
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 39.3 bits (92), Expect = 0.002
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 112 ASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTAL---LAWKANM 168
+ N++N F+ D K+ R RPLP G +S + A+ ++ + G AL + +A
Sbjct: 51 SGGNTINDYFDYEID-KINRP-NRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-F 107
Query: 169 LTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG 222
L A A + LYA+ PL I N V + GA P+ G AVG + L G
Sbjct: 108 LFALGAYVLMFLYAWKLKPLPFIG--NVVVALLTGAT-PIYG-AIAVGRIGLAG 157
>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase.
Length = 289
Score = 37.0 bits (86), Expect = 0.012
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 85 TGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISV 144
A GS DL L G +++ + ++N L + D K++RT RP+ SG ++
Sbjct: 32 IALAAPPGSLPDLKMLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTP 91
Query: 145 RHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGA 204
V + + + G +L + N + L AS+L+L F Y +K+ W A +G
Sbjct: 92 FQGVGFLGAQLLLGLGILL-QLNNYSRILGASSLLL-VFTYPLMKRFTF---WPQAFLGL 146
Query: 205 I---PPLLGWTAAVGHVSLN-GMILP--AALYFW 232
LLGW A G SL+ ++LP A+ W
Sbjct: 147 TFNWGALLGWAAVKG--SLDPAVVLPLYASGVCW 178
>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase;
Reviewed.
Length = 314
Score = 36.4 bits (85), Expect = 0.021
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 14/105 (13%)
Query: 135 RPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYT--P--LKQ 190
RP+PSG IS+R + + + V G A +A+ A L L A++Y+ P LKQ
Sbjct: 100 RPIPSGAISLRWVLYLIAVLTVLGLA-VAYLLGPWVFLAALLGLFL-AWIYSAPPLRLKQ 157
Query: 191 IHPVNTWVG-AIVGAIPPLLGW---TAAVGHVSLNGMILPAALYF 231
N W+G VG L W AA G + I+ AL +
Sbjct: 158 ----NGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLY 198
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 36.1 bits (84), Expect = 0.027
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 112 ASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTA 171
SAN+LN F+ D + RP+PSGRIS R A+ A + + G + A+ + L A
Sbjct: 51 GSANALNDYFDYEVDRINRPD--RPIPSGRISRREALLLAILLFILG-LIAAYLISPL-A 106
Query: 172 GLAASNLILYAFVY 185
L + + +Y
Sbjct: 107 FLVVILVSVLGILY 120
>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated.
Length = 479
Score = 32.5 bits (75), Expect = 0.36
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAW 164
+ A++ LN L ++ D R RRP SG + + + A+ + + LA
Sbjct: 237 LCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLA-AAPLLLLAGLALAL 291
>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate
phosphoribosyltransferase; Provisional.
Length = 295
Score = 32.5 bits (75), Expect = 0.37
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 109 MVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANM 168
+ +++ +N + ++ D RP+ SG +SV A A + VA LA+ +
Sbjct: 57 LASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVAS-LALAYLLSP 115
Query: 169 LTAGLAASNLIL---YAFVYTPLKQI 191
A + L+L Y+F LK
Sbjct: 116 KLALVLLVYLVLNLAYSFK---LKHQ 138
>gnl|CDD|236549 PRK09528, lacY, galactoside permease; Reviewed.
Length = 420
Score = 32.2 bits (74), Expect = 0.44
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 181 YAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVG 216
+ +V+ PL Q N +GAIVG I G+ A G
Sbjct: 94 FIYVFAPLLQ---YNILLGAIVGGIYLGFGFLAGAG 126
>gnl|CDD|183194 PRK11556, PRK11556, multidrug efflux system subunit MdtA;
Provisional.
Length = 415
Score = 31.7 bits (72), Expect = 0.76
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 350 SLPEEDSEKIVELSSSSETVPVESEDMNRKKKLS 383
+LPE D +V+ + + + VE+ D KKLS
Sbjct: 239 TLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLS 272
>gnl|CDD|237283 PRK13106, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 31.2 bits (71), Expect = 1.0
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)
Query: 111 AASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVTW--ASSVGVAGTALLAWKANM 168
A N + L ++ DAK RT RPL +G I + A A + +A L + +
Sbjct: 64 AGMTN--DNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWAL 121
Query: 169 LTAGLAASNLILYAFVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVG 216
L + + A L A Y +K+ + A + + G A +G
Sbjct: 122 LLSPIVA----LIAMSYPYMKRYTAFANYHLASIQGLAVFSGAVAVLG 165
>gnl|CDD|227379 COG5046, MAF1, Protein involved in Mod5 protein sorting
[Posttranslational modification, protein turnover,
chaperones].
Length = 282
Score = 30.7 bits (69), Expect = 1.1
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 11 ISYSQSNRSQHSSTELGFLVNRKCHGVRSSSSASASDSA--TGAAADPFSLIRHYGRCYW 68
+ Y RS +S +L + +C + S+S S + PF G Y
Sbjct: 74 VVYQMEYRSTNSDKKLFKAIENRCQEDLFALSSSKSSEYAFSLTQQSPF------GP-YL 126
Query: 69 ELSKARLSMLVVAT 82
ELS + A
Sbjct: 127 ELSSRSKFNYLFAK 140
>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed.
Length = 294
Score = 30.8 bits (70), Expect = 1.4
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 105 TGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGRISVRHAVT 149
G + V+ + N L++ D K++RT RPL G+IS++ A +
Sbjct: 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYS 95
>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed.
Length = 300
Score = 30.5 bits (69), Expect = 1.5
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 82 TSGTGFALGSGSTIDLAGLCWTCTGTMMVAASANSLNQLFEISNDAKMKRTMRRPLPSGR 141
S + F+LG TI L G + C T+ + NQ+ + + D K RT R LP+
Sbjct: 36 ISFSLFSLGGIKTISLGGSAFFCARTVGIIV-----NQIIDCAIDKKNPRTSSRVLPAKL 90
Query: 142 ISVRHAV 148
+S+ ++
Sbjct: 91 LSINFSM 97
>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG. This model represents
the strictly cyanobacterial and plant-specific
chlorophyll synthase ChlG. ChlG is the enzyme (esterase)
which attaches the side chain moiety onto chlorophyllide
a. Both geranylgeranyl and phytyl pyrophosphates are
substrates to varying degrees in enzymes from different
sources. Thus, ChlG may act as the final or penultimate
step in chlorophyll biosynthesis (along with the
geranylgeranyl reductase, ChlP) [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 306
Score = 30.3 bits (68), Expect = 1.8
Identities = 59/226 (26%), Positives = 86/226 (38%), Gaps = 33/226 (14%)
Query: 135 RPLPSGRISVRHAVT-----WASSVGVAGTALLAWKA----NMLTAGLAASNLILYAFVY 185
RP+PSG IS +T + + + +A L W N+ L S I + +
Sbjct: 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFI-LDLWAGHEFPNVFVLALFGS-FIAFIYSA 146
Query: 186 TPLKQIHPVNTWVGAI-VGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYLC 244
PLK N W+G +GA L W A GH +L G + P I L
Sbjct: 147 PPLKLKQ--NGWLGNFALGASYIALPWWA--GH-ALFGELNPDIAVLTLIYSIAGLGIAI 201
Query: 245 RNDY-AAGGYRMI---SLADASGQRTA---LVALRNCLYLVPLGYLAYDWGVTSGWFCLE 297
ND+ + G R + SL A G TA V + + YL + G
Sbjct: 202 VNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYL-----LAIGENLYA 256
Query: 298 SSLITLAISAAAFSF-YRDRTTQKARKMFHAS---LLYLPVFMSGL 339
++L+ L I F Y + K + AS L L +F++ L
Sbjct: 257 AALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFVAAL 302
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 2.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 178 LILYA----FVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV 218
L+L+A +V+ PL Q N VGAIVG + ++A G +
Sbjct: 84 LVLFAPFFIYVFGPLLQ---SNILVGAIVGGVYLGFVFSAGAGAI 125
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 29.7 bits (67), Expect = 2.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 178 LILYA----FVYTPLKQIHPVNTWVGAIVGAIPPLLGWTAAVGHV 218
L+L+A +V+ PL Q N VGAIVG + ++A G +
Sbjct: 79 LVLFAPFFIYVFGPLLQ---SNILVGAIVGGLYLGFVFSAGAGAI 120
>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed.
Length = 308
Score = 29.6 bits (67), Expect = 3.4
Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 79 VVATSGTGFAL------GSGSTIDLAGLCWTCTGTMMVAASAN----SLNQLFEISNDAK 128
++ TS + L S +TI LA L G + N LNQL +I D
Sbjct: 25 IIGTSLSVLGLYLIAIAASSNTIALANLGLL-LGAWIACLCGNVYIVGLNQLTDIEIDRI 83
Query: 129 MKRTMRRPLPSGRISVRHAVTWASSVGVAGTALLAWKANMLTAGLAASNLILYAFVYTPL 188
K + PL +G S R G+ L A L + S LI A+ P+
Sbjct: 84 NKPHL--PLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSLPPI 141
Query: 189 K 189
+
Sbjct: 142 R 142
>gnl|CDD|226330 COG3808, OVP1, Inorganic pyrophosphatase [Energy production and
conversion].
Length = 703
Score = 29.7 bits (67), Expect = 3.4
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 141 RISVRHAV--TWASSVGVAGTALLAWKAN----MLTAGLAASNLILYAFVYT-PLKQIHP 193
+S R V A+S G+ +A+K+ + AGLA L LY V T L
Sbjct: 99 HVSTRANVRTAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPN 158
Query: 194 VNTWVGAIVG 203
+ + ++VG
Sbjct: 159 LRIVIDSLVG 168
>gnl|CDD|234087 TIGR03013, EpsB_2, sugar transferase, PEP-CTERM system associated.
Members of this protein family belong to the family of
bacterial sugar transferases (pfam02397). Nearly all are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria (notable exceptions appear to
include Magnetococcus sp. MC-1 and Myxococcus xanthus DK
1622 ). These genes are generally found near one or more
of the PrsK, PrsR or PrsT genes that have been related
to the PEP-CTERM system by phylogenetic profiling
methods. The nature of the sugar transferase reaction
catalyzed by members of this clade is unknown and may
conceivably be variable with respect to substrate by
species. These proteins are homologs of the EpsB protein
found in Methylobacillus sp. strain 12S , which is also
associated with a PEP-CTERM system, but of a distinct
type. A name which appears attached to a number of genes
(by transitive annotation) in this family is
"undecaprenyl-phosphate galactose phosphotransferase",
which comes from relatively distant characterized
enterobacterial homologs, and is considerably more
specific than warranted from the currently available
evidence.
Length = 442
Score = 29.3 bits (66), Expect = 3.8
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 268 LVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLITLA--ISAAAFSFYRDRTTQKARKMF 325
LV L+ Y + + S + L ISA A Y + R +
Sbjct: 6 LVLALYLAVLLRFFYQIGMFSLLSLVPLAQLVTFALVVIISAIALGLYNVDLREDFRGII 65
Query: 326 HASLLYLPVFMSGLLF 341
+ L V L F
Sbjct: 66 ARLAISLLVSFLALSF 81
>gnl|CDD|187803 cd09672, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 545
Score = 29.4 bits (66), Expect = 4.2
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 344 LTDNQQSLPEEDSEKIVELSSSSETVPVESEDMNRKKKLSYYSSLGRQ 391
D D I++L+ +SE + + D ++++K+ Y + G
Sbjct: 21 DEDLMVEEKSGDYLVIIDLNLNSEKINIYRRDFDKQEKVFLYRAKGNN 68
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and
metabolism].
Length = 541
Score = 29.1 bits (66), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 72 KAR-LSMLVVATS-GTGFALGSGSTIDLAG-----LCWTCTGTMM 109
K+R L M+ + + GTG +GSG + AG + + G M+
Sbjct: 47 KSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMV 91
>gnl|CDD|223744 COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion
transport and metabolism].
Length = 383
Score = 28.9 bits (65), Expect = 5.4
Identities = 32/183 (17%), Positives = 53/183 (28%), Gaps = 37/183 (20%)
Query: 178 LILYAFV-YTPLKQ--IHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNG----------MI 224
L + A + Y P+ G V +LG+ G + LN ++
Sbjct: 156 LFVAAILAYLVKGHTSAIPLVAVAGLAVAL---VLGFLIYWGGIKLNLQAFFLLTGFLLL 212
Query: 225 LPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADASGQRTAL-VALRNCL-------- 275
AA F L +L GY + DA L + L + L
Sbjct: 213 FVAAGLFS-----GGLWHLHEAGANWNGYIEGKVLDALSNGLLLSLWLTSFLAVYREGLG 267
Query: 276 --YLVPLGYLAYDWGVTSG-WFCLESSLITLAISAAAFSFYRDRTTQKARKMFHASLLYL 332
GY A + G +F + L + + + K ++ L+
Sbjct: 268 LFLEGLFGYAATPSALEVGVYF----GYLILVLILLLIRYRSVKLPLKPFFQITSAFLFY 323
Query: 333 PVF 335
F
Sbjct: 324 MCF 326
>gnl|CDD|221168 pfam11694, DUF3290, Protein of unknown function (DUF3290). This
family of proteins with unknown function appears to be
restricted to Firmicutes.
Length = 149
Score = 28.1 bits (63), Expect = 5.7
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 9/88 (10%)
Query: 300 LITLAISAAAFSFYRDRTTQKARKMFHASLLYLPVFMSGLLFHRLTDNQQSLPEEDSEKI 359
++ + I AF + R + K R + SLL+L + G+ NQ S + S++I
Sbjct: 25 ILLVVIIIFAFKYLRHKFDTKYRDLSIISLLFL-LLFIGIQISNYQTNQSS--KNQSQQI 81
Query: 360 VELSSSSETVPVESEDMNRKKKLSYYSS 387
V + ++D+ K Y ++
Sbjct: 82 VHF------IESVAKDLGVDKSEVYVNT 103
>gnl|CDD|226774 COG4324, COG4324, Predicted aminopeptidase [General function
prediction only].
Length = 376
Score = 28.8 bits (64), Expect = 6.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 221 NGMILPAALYFWQIPHFMALAYLCRNDYAAGGYRMISLADA--SGQRTALVALRNC 274
N + A+Y +P F+ L LC D+ + ++AD + + AL AL C
Sbjct: 320 NAKLAATAVYGQWVPAFLHLFNLCGGDWPRFYASVRAIADLPEAERAAALKALATC 375
>gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed.
Length = 297
Score = 28.2 bits (63), Expect = 8.6
Identities = 47/214 (21%), Positives = 87/214 (40%), Gaps = 33/214 (15%)
Query: 135 RPLPSGRISVRHAVTWASSVGVAGTALLA----WKANMLTAGLAASNLILYAFVYTPLK- 189
RP+PSG++S ++A + A T+ L + ++ + + + AF +
Sbjct: 87 RPIPSGKLSSKNAF-ALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQVKKRN 145
Query: 190 QIHPVNTWVGAIVGAIPPLLGWTAAVGHVSLNGMILPAALYFWQIPHFMALAYL-CRNDY 248
Q +PV +G + P G+ G + ++ Y W + H ++ ND
Sbjct: 146 QKYPVAQLLGRTDFTLFPAAGYL-CYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDR 204
Query: 249 AAGGYRMISLADASGQR---------TALVALRNCLYLVPLGYLAYDWGVTSGWFCLESS 299
A G M S+A G + TAL L +L LG +A +G +G+ L
Sbjct: 205 ARG---MKSIAVLYGMKGTMYWVTGFTALHFLAAIFFLRELGPIAL-YGFLAGFVLL--- 257
Query: 300 LITLAISAAAFSFYRDRTTQKARK---MFHASLL 330
+ A +++++ K ++HASL+
Sbjct: 258 ------AGANLYLWKEKSQDAGMKILPLYHASLV 285
>gnl|CDD|236945 PRK11644, PRK11644, sensory histidine kinase UhpB; Provisional.
Length = 495
Score = 28.0 bits (63), Expect = 9.3
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 257 SLADASGQRTALVALRNCLYLVPLGYLAYDWGVTSGWFCLESSLI 301
G L+ L L L P L + + + W L SL+
Sbjct: 128 LWHGKEGWNALLLTLTGGLTLAPTCLLFWHYLAQNTWLPLGPSLV 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.131 0.400
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,640,841
Number of extensions: 1965486
Number of successful extensions: 1992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 94
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)