Query 015001
Match_columns 414
No_of_seqs 258 out of 2711
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:08:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 4.4E-21 9.5E-26 166.7 -1.8 259 12-310 98-375 (419)
2 KOG4341 F-box protein containi 99.6 8.9E-18 1.9E-22 152.6 -2.2 319 14-348 74-436 (483)
3 PLN00113 leucine-rich repeat r 99.4 2E-13 4.4E-18 146.9 9.4 172 113-287 92-270 (968)
4 PLN03210 Resistant to P. syrin 99.4 1.8E-12 3.9E-17 140.6 11.5 211 135-347 630-878 (1153)
5 PLN00113 leucine-rich repeat r 99.4 1.5E-12 3.2E-17 140.3 9.1 81 114-196 140-222 (968)
6 PLN03210 Resistant to P. syrin 99.2 6.2E-11 1.3E-15 128.7 10.4 206 137-348 609-856 (1153)
7 KOG4194 Membrane glycoprotein 99.2 5.6E-12 1.2E-16 119.7 0.0 229 114-348 149-426 (873)
8 KOG3207 Beta-tubulin folding c 99.0 1.5E-11 3.2E-16 113.1 -2.1 193 137-329 119-336 (505)
9 cd00116 LRR_RI Leucine-rich re 99.0 8E-11 1.7E-15 110.5 1.9 172 114-287 23-231 (319)
10 KOG4194 Membrane glycoprotein 99.0 3.2E-10 6.9E-15 108.0 5.3 120 228-349 220-352 (873)
11 KOG2120 SCF ubiquitin ligase, 99.0 3.2E-11 6.8E-16 105.8 -3.3 173 163-350 187-376 (419)
12 PF12937 F-box-like: F-box-lik 98.9 1.2E-09 2.6E-14 70.8 2.5 35 12-46 1-35 (47)
13 cd00116 LRR_RI Leucine-rich re 98.8 1.4E-09 3.1E-14 101.9 2.4 197 114-311 51-291 (319)
14 PRK15387 E3 ubiquitin-protein 98.8 2.1E-08 4.5E-13 102.5 10.6 218 112-350 199-457 (788)
15 KOG0444 Cytoskeletal regulator 98.7 1.7E-10 3.7E-15 110.6 -8.2 192 114-310 126-351 (1255)
16 KOG0444 Cytoskeletal regulator 98.7 6.8E-10 1.5E-14 106.6 -5.5 230 115-348 33-278 (1255)
17 PRK15370 E3 ubiquitin-protein 98.6 5.9E-08 1.3E-12 99.6 6.5 220 114-350 178-427 (754)
18 KOG3207 Beta-tubulin folding c 98.6 8.7E-09 1.9E-13 95.2 -0.3 147 137-283 170-332 (505)
19 KOG4341 F-box protein containi 98.6 1.5E-09 3.3E-14 99.6 -5.4 249 101-350 126-413 (483)
20 PRK15370 E3 ubiquitin-protein 98.5 2.3E-07 4.9E-12 95.4 7.2 119 139-266 178-297 (754)
21 KOG1909 Ran GTPase-activating 98.4 2.8E-08 6E-13 89.5 -1.4 239 102-348 17-308 (382)
22 PF00646 F-box: F-box domain; 98.4 4.1E-08 8.9E-13 63.9 -0.2 39 11-49 2-40 (48)
23 KOG1909 Ran GTPase-activating 98.3 7.6E-08 1.6E-12 86.7 -0.8 225 81-310 28-310 (382)
24 smart00256 FBOX A Receptor for 98.3 3.4E-07 7.5E-12 57.3 2.1 34 15-48 1-34 (41)
25 PF14580 LRR_9: Leucine-rich r 98.3 3.6E-07 7.8E-12 76.7 2.9 59 228-286 87-149 (175)
26 PRK15387 E3 ubiquitin-protein 98.3 1.8E-06 4E-11 88.5 7.8 194 139-348 201-412 (788)
27 KOG0618 Serine/threonine phosp 98.3 9.6E-08 2.1E-12 96.0 -1.4 200 102-310 254-488 (1081)
28 KOG3665 ZYG-1-like serine/thre 98.1 1.1E-06 2.3E-11 89.6 2.1 147 139-286 122-284 (699)
29 KOG0618 Serine/threonine phosp 98.1 2.1E-07 4.6E-12 93.6 -4.1 198 161-362 241-500 (1081)
30 PF14580 LRR_9: Leucine-rich r 98.0 1.2E-06 2.5E-11 73.7 0.6 77 228-304 63-146 (175)
31 KOG1947 Leucine rich repeat pr 98.0 8.2E-07 1.8E-11 88.2 -1.1 126 113-238 187-330 (482)
32 KOG0617 Ras suppressor protein 98.0 1.4E-07 3E-12 76.7 -5.3 82 135-218 29-112 (264)
33 KOG2982 Uncharacterized conser 98.0 2.2E-06 4.8E-11 75.9 1.3 192 114-306 71-287 (418)
34 KOG0617 Ras suppressor protein 97.9 8.9E-08 1.9E-12 77.8 -7.8 66 129-196 46-112 (264)
35 KOG4658 Apoptotic ATPase [Sign 97.7 0.00015 3.3E-09 76.2 10.2 275 64-348 457-780 (889)
36 KOG3665 ZYG-1-like serine/thre 97.7 1E-05 2.2E-10 82.7 0.5 34 250-286 171-204 (699)
37 KOG0472 Leucine-rich repeat pr 97.6 8.8E-08 1.9E-12 87.8 -13.8 196 129-331 104-309 (565)
38 KOG1259 Nischarin, modulator o 97.6 1.1E-05 2.4E-10 71.6 -1.2 124 160-286 283-408 (490)
39 KOG4658 Apoptotic ATPase [Sign 97.5 3E-05 6.6E-10 81.3 0.4 199 113-314 570-786 (889)
40 KOG1259 Nischarin, modulator o 97.4 0.00021 4.6E-09 63.7 5.4 30 321-350 376-411 (490)
41 KOG1859 Leucine-rich repeat pr 97.4 2.4E-05 5.3E-10 77.3 -1.2 201 79-286 51-288 (1096)
42 KOG2982 Uncharacterized conser 97.3 0.00015 3.3E-09 64.5 3.0 149 139-287 45-209 (418)
43 KOG1947 Leucine rich repeat pr 97.3 2.5E-05 5.3E-10 77.6 -2.3 148 139-286 161-330 (482)
44 COG5238 RNA1 Ran GTPase-activa 97.2 0.00011 2.5E-09 64.4 1.0 239 101-348 16-313 (388)
45 KOG0472 Leucine-rich repeat pr 97.2 3.1E-06 6.6E-11 77.9 -9.6 58 206-265 250-310 (565)
46 COG4886 Leucine-rich repeat (L 97.1 0.0004 8.7E-09 67.2 4.0 170 135-310 112-289 (394)
47 PF13855 LRR_8: Leucine rich r 97.1 0.00014 3E-09 49.8 0.2 56 140-196 2-59 (61)
48 PRK15386 type III secretion pr 97.0 0.0014 3.1E-08 62.2 6.4 134 159-308 50-187 (426)
49 PF13855 LRR_8: Leucine rich r 96.9 0.00087 1.9E-08 45.8 3.1 15 248-262 45-59 (61)
50 KOG4237 Extracellular matrix p 96.8 0.00018 3.9E-09 66.5 -1.4 77 273-350 270-358 (498)
51 COG4886 Leucine-rich repeat (L 96.7 0.00081 1.8E-08 65.1 2.5 166 114-287 116-287 (394)
52 KOG2739 Leucine-rich acidic nu 96.7 0.00022 4.7E-09 62.5 -1.9 104 115-218 19-126 (260)
53 KOG2739 Leucine-rich acidic nu 96.5 0.00049 1.1E-08 60.3 -0.7 54 187-240 44-102 (260)
54 KOG4237 Extracellular matrix p 96.5 0.00043 9.2E-09 64.1 -1.5 193 115-310 68-334 (498)
55 PRK15386 type III secretion pr 96.4 0.0064 1.4E-07 57.9 6.0 32 114-150 52-83 (426)
56 KOG1644 U2-associated snRNP A' 96.1 0.015 3.2E-07 49.3 5.9 55 139-196 42-98 (233)
57 PF07723 LRR_2: Leucine Rich R 96.1 0.0088 1.9E-07 32.8 3.0 25 162-186 1-26 (26)
58 PLN03150 hypothetical protein; 95.9 0.0077 1.7E-07 61.7 4.1 101 209-311 419-528 (623)
59 PF12799 LRR_4: Leucine Rich r 95.9 0.004 8.6E-08 39.2 1.2 15 182-196 20-34 (44)
60 PF12799 LRR_4: Leucine Rich r 95.8 0.0059 1.3E-07 38.4 1.8 33 253-287 2-34 (44)
61 KOG1644 U2-associated snRNP A' 95.8 0.01 2.2E-07 50.3 3.7 64 135-199 60-126 (233)
62 KOG2123 Uncharacterized conser 95.8 0.00075 1.6E-08 59.7 -3.1 95 208-304 19-123 (388)
63 KOG0281 Beta-TrCP (transducin 95.8 0.003 6.5E-08 57.1 0.5 36 9-44 72-111 (499)
64 COG5238 RNA1 Ran GTPase-activa 95.8 0.007 1.5E-07 53.5 2.7 120 99-218 41-195 (388)
65 KOG2123 Uncharacterized conser 95.7 0.00095 2.1E-08 59.0 -2.8 96 115-214 20-123 (388)
66 KOG1859 Leucine-rich repeat pr 95.3 0.0032 7E-08 62.9 -1.1 73 276-348 186-264 (1096)
67 PLN03150 hypothetical protein; 95.3 0.018 3.9E-07 59.1 4.1 100 230-330 419-526 (623)
68 KOG3864 Uncharacterized conser 94.8 0.0066 1.4E-07 51.3 -0.5 89 130-218 92-186 (221)
69 KOG0532 Leucine-rich repeat (L 94.6 0.0025 5.4E-08 61.9 -3.8 137 127-266 109-248 (722)
70 KOG0531 Protein phosphatase 1, 93.9 0.0084 1.8E-07 58.4 -1.9 80 135-218 91-172 (414)
71 KOG2997 F-box protein FBX9 [Ge 93.9 0.027 5.9E-07 50.8 1.3 38 7-44 102-144 (366)
72 PLN03215 ascorbic acid mannose 93.5 0.045 9.8E-07 51.5 2.3 38 11-48 3-41 (373)
73 KOG0532 Leucine-rich repeat (L 92.7 0.0036 7.8E-08 60.8 -6.3 154 127-287 86-244 (722)
74 KOG0531 Protein phosphatase 1, 90.4 0.063 1.4E-06 52.3 -0.8 80 135-218 114-196 (414)
75 KOG3864 Uncharacterized conser 90.3 0.11 2.4E-06 44.2 0.7 59 249-307 122-185 (221)
76 KOG0274 Cdc4 and related F-box 89.2 0.19 4.1E-06 50.3 1.6 40 6-45 102-141 (537)
77 PF13013 F-box-like_2: F-box-l 83.5 0.6 1.3E-05 35.7 1.3 30 11-40 21-50 (109)
78 PF13516 LRR_6: Leucine Rich r 82.2 1.1 2.4E-05 23.7 1.7 21 251-271 1-21 (24)
79 PF08387 FBD: FBD; InterPro: 81.7 0.69 1.5E-05 30.0 0.9 31 365-395 12-42 (51)
80 PF13306 LRR_5: Leucine rich r 80.2 0.54 1.2E-05 37.0 0.0 57 136-194 9-66 (129)
81 smart00367 LRR_CC Leucine-rich 79.0 1.1 2.5E-05 24.2 1.1 12 186-197 2-13 (26)
82 PF13306 LRR_5: Leucine rich r 78.7 1.2 2.6E-05 35.0 1.6 12 183-194 9-20 (129)
83 PF13504 LRR_7: Leucine rich r 77.1 1.5 3.2E-05 21.2 1.0 10 299-308 2-11 (17)
84 KOG4579 Leucine-rich repeat (L 76.7 0.59 1.3E-05 37.4 -0.7 63 135-199 49-113 (177)
85 PF00560 LRR_1: Leucine Rich R 74.3 2.5 5.5E-05 21.8 1.6 9 300-308 2-10 (22)
86 KOG3763 mRNA export factor TAP 65.1 3.1 6.7E-05 41.0 1.1 60 138-199 217-283 (585)
87 PF09372 PRANC: PRANC domain; 64.0 5.3 0.00012 29.9 2.0 25 10-34 70-94 (97)
88 smart00368 LRR_RI Leucine rich 58.6 9.3 0.0002 21.1 1.9 20 252-271 2-21 (28)
89 smart00579 FBD domain in FBox 58.1 3.9 8.5E-05 28.6 0.4 26 369-394 7-32 (72)
90 KOG4308 LRR-containing protein 52.4 0.21 4.6E-06 49.3 -9.3 152 134-286 110-299 (478)
91 smart00579 FBD domain in FBox 51.1 21 0.00046 24.7 3.2 30 320-349 6-44 (72)
92 KOG1665 AFH1-interacting prote 47.4 34 0.00075 29.7 4.4 41 159-199 169-209 (302)
93 KOG3763 mRNA export factor TAP 44.9 9.6 0.00021 37.7 0.9 63 221-283 236-307 (585)
94 KOG4579 Leucine-rich repeat (L 43.4 2.1 4.5E-05 34.4 -3.2 39 227-265 75-113 (177)
95 KOG3926 F-box proteins [Amino 43.1 20 0.00044 32.1 2.4 52 4-55 194-252 (332)
96 smart00029 GASTRIN gastrin / c 39.4 5 0.00011 21.2 -1.1 11 399-410 1-11 (26)
97 KOG4408 Putative Mg2+ and Co2+ 33.4 10 0.00022 35.0 -0.9 39 12-50 8-46 (386)
98 smart00370 LRR Leucine-rich re 31.9 31 0.00066 18.3 1.2 14 252-265 2-15 (26)
99 smart00369 LRR_TYP Leucine-ric 31.9 31 0.00066 18.3 1.2 14 252-265 2-15 (26)
100 smart00365 LRR_SD22 Leucine-ri 26.7 45 0.00098 18.1 1.3 13 252-264 2-14 (26)
101 PF01827 FTH: FTH domain; Int 25.0 3.4E+02 0.0073 21.2 8.0 118 66-193 2-124 (142)
102 PF11880 DUF3400: Domain of un 23.8 56 0.0012 20.4 1.4 13 396-408 23-35 (45)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.4e-21 Score=166.70 Aligned_cols=259 Identities=22% Similarity=0.272 Sum_probs=168.8
Q ss_pred CCCCCHHHHHHHhccCChHHHHHhhhcccCchhh------ccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCe
Q 015001 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISI 85 (414)
Q Consensus 12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l------w~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l 85 (414)
+..|||||+..||+.|+.+|+++.+.|||||+.+ |..+ +..+.-. -.....+.+ .+.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i-------~p~~l~~l~------~rgV 161 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNI-------HPDVLGRLL------SRGV 161 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCcc-------ChhHHHHHH------hCCe
Confidence 7899999999999999999999999999999875 5442 2221111 012333333 2355
Q ss_pred eeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCccc
Q 015001 86 KKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSL 163 (414)
Q Consensus 86 ~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L 163 (414)
..|++--.. .....+... ...+..+++++|+++.......+...+..|..|+.|++.|..++.+ ...+.=.+|
T Consensus 162 ~v~Rlar~~----~~~prlae~-~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L 236 (419)
T KOG2120|consen 162 IVFRLARSF----MDQPRLAEH-FSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL 236 (419)
T ss_pred EEEEcchhh----hcCchhhhh-hhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence 555543111 111111111 1123347999999986666666777778899999999999988776 445556789
Q ss_pred ceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCccee---ecCC-CCCCceEEEeec-CCCceEeeeccceeeeEee
Q 015001 164 RKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIH 237 (414)
Q Consensus 164 ~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~-l~~L~~L~l~~~-~~l~~~~~~~p~L~~L~l~ 237 (414)
+.|+|+.+.. +..++.-++++|..|.+|+|+.|...... .+.+ .++|+.|++++| .++..
T Consensus 237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~-------------- 302 (419)
T KOG2120|consen 237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK-------------- 302 (419)
T ss_pred eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh--------------
Confidence 9999999886 88889999999999999999999766432 1111 277888888877 11110
Q ss_pred eecccceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEeccccccccc--cc--ccccccceEEeeccCC
Q 015001 238 QTYLFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDK 310 (414)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--l~--~~~~~L~~L~l~~c~~ 310 (414)
..+......||+|.+||++.+- +.+ .....+..|+.|++|.++.|..+.. +. ...|.|.+|++.+|-.
T Consensus 303 ----sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 303 ----SHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ----hHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 0011223456666667766444 333 4444567788888888888754432 11 2677888888877654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.64 E-value=8.9e-18 Score=152.58 Aligned_cols=319 Identities=18% Similarity=0.216 Sum_probs=163.8
Q ss_pred CCCHHHHHHHhccCChHHHHHhhhcccCchhh------ccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCeee
Q 015001 14 TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (414)
Q Consensus 14 ~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l------w~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~ 87 (414)
.||.|++.+|||||+++.+.+++++|+-|.-+ |.++....|..+..+ ..|...+ ++-+..++.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcgg~lk~ 142 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCGGFLKE 142 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhcccccc
Confidence 69999999999999999999999999999864 777666666544332 2222222 112245555
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCC-ccccCCccccCCCcccEEEecCcccCCC----CccccCcc
Q 015001 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFS 162 (414)
Q Consensus 88 l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~ 162 (414)
++++...+ .....+..... .-+++++|.+..+.. ....+......|.+|++|++..|..-+. .....|++
T Consensus 143 LSlrG~r~---v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 143 LSLRGCRA---VGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccc---CCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 55554332 11111111110 113444444433221 0111111122245555555554422111 12334455
Q ss_pred cceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcce--e-ec-CCCCCCceEEEeecCCCceEe-----eecccee
Q 015001 163 LRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLES--L-DL-VNLSNLKEIILVNTSDIKRVE-----IKTSNVN 232 (414)
Q Consensus 163 L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l-~i-~~l~~L~~L~l~~~~~l~~~~-----~~~p~L~ 232 (414)
|++|+++.|.. ....++.+..+|..++++.+.+|...+. + .+ ..++-+.++++..|..+.... -.+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 55555555443 3334444444555555554444433311 0 00 012333344433442222221 1345566
Q ss_pred eeEeeeecc---cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccc-----cccccccccccceE
Q 015001 233 ALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHK-----LTSVRISSPCLKTL 303 (414)
Q Consensus 233 ~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~-----~~~l~~~~~~L~~L 303 (414)
.++++++.. .++..-..++++|+.|.+..+. +++..+..+-.+++.|+.|++..|.. +..+...++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 666665541 1111123456777777776555 55555666667777777777777632 23344577888888
Q ss_pred EeeccCCceEe-----e---ccCCCeeeEEEeCcee------EEeccCCccceEEEEee
Q 015001 304 ILECCDKLIQV-----E---IETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 304 ~l~~c~~l~~~-----~---~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~ 348 (414)
.+++|..+.+. . -....+..+++.+++. ..+.++++||.+++.-.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 88877765432 1 1123356666666655 45666788888777544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.44 E-value=2e-13 Score=146.94 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=89.8
Q ss_pred hCCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
.++++.|++..+. -...+|..++ .+++|++|++++|.+........+++|++|+|++|.++.. +...+.++++|++|
T Consensus 92 l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence 3577777776532 1225666555 6777888888777664333334567777777777765322 22224566777777
Q ss_pred EeeccCCccee--ecCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCc
Q 015001 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (414)
Q Consensus 192 ~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (414)
++++|.....+ .+..+++|+.|++++|.-...++ ..+++|+.|+++++. ....+..++++++|++|++.++.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 77766433221 23445666666666652111111 134555555555544 2222334455555555555555443
Q ss_pred hHHHHhhhccCCCCcEEecccc
Q 015001 266 DEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+. ++..+..+++|+.|+++++
T Consensus 250 ~~-~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 250 GP-IPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred cc-cChhHhCCCCCCEEECcCC
Confidence 21 2222344455555555443
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=1.8e-12 Score=140.57 Aligned_cols=211 Identities=23% Similarity=0.236 Sum_probs=100.8
Q ss_pred ccCCCcccEEEecCcc-cCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecC-CCCCCce
Q 015001 135 IFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKE 212 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~-~l~~L~~ 212 (414)
+..+++|+.|+++++. +...+....+++|++|+|.+|... ..+...+..+++|+.|.+.+|..+..+... .+++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3334444444444432 111123334455555555544321 111222344555555555555444333211 3455555
Q ss_pred EEEeecCCCceEeeeccceeeeEeeeecccceeeec------------------------------cccccCceeEeecc
Q 015001 213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNV------------------------------SSCGNLKCLKFDFL 262 (414)
Q Consensus 213 L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~------------------------------~~~~~L~~L~l~~~ 262 (414)
|++++|..+..++...++|++|+++++....++..+ ..+++|+.|+++++
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 555555444433333345555555544311111110 01235555555544
Q ss_pred CCchHHHHhhhccCCCCcEEecccccccccccc--cccccceEEeeccCCceEeeccCCCeeeEEEeCcee----EEecc
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSN 336 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~--~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~----~~~~~ 336 (414)
..... ++..+.++++|+.|++++|..++.++. .+++|+.|++++|..+..++...++|+.|.+.++.. ..+.+
T Consensus 789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 32221 233356677788888888776666654 467778888887776655443334555555554433 23344
Q ss_pred CCccceEEEEe
Q 015001 337 ALSLSETSLCF 347 (414)
Q Consensus 337 ~~~L~~L~l~~ 347 (414)
+++|+.|+++.
T Consensus 868 l~~L~~L~L~~ 878 (1153)
T PLN03210 868 FSNLSFLDMNG 878 (1153)
T ss_pred CCCCCEEECCC
Confidence 45555555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.36 E-value=1.5e-12 Score=140.32 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=37.8
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
+++++|++..+.. ...+|..+..+++|++|++++|.+. .|.....+++|++|+|++|.+.... ...+..+++|+.|
T Consensus 140 ~~L~~L~Ls~n~~-~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L 217 (968)
T PLN00113 140 PNLETLDLSNNML-SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWI 217 (968)
T ss_pred CCCCEEECcCCcc-cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEE
Confidence 4566666654211 1234445555566666666655442 1233445555555555555442111 1123444555555
Q ss_pred Eeecc
Q 015001 192 EIRSC 196 (414)
Q Consensus 192 ~l~~c 196 (414)
++.+|
T Consensus 218 ~L~~n 222 (968)
T PLN00113 218 YLGYN 222 (968)
T ss_pred ECcCC
Confidence 55444
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=6.2e-11 Score=128.73 Aligned_cols=206 Identities=19% Similarity=0.222 Sum_probs=138.0
Q ss_pred CCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceE
Q 015001 137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L 213 (414)
...+|++|++.++.+... .....+++|+.|+|+++.... .+.. ++.+++|++|.+.+|..+..+ .+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 356788888887766432 445678888888888764311 1111 567889999999998776544 45567899999
Q ss_pred EEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh--------------------
Q 015001 214 ILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN-------------------- 271 (414)
Q Consensus 214 ~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------------- 271 (414)
++++|..+..++. .+++|++|.+++|..... .....++|+.|++.++.+.. ++.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~--~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKS--FPDISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCccc--cccccCCcCeeecCCCcccc--ccccccccccccccccccchhhc
Confidence 9999866666554 578899999988762110 01123578888887666432 110
Q ss_pred ----------hhccCCCCcEEecccccccccccc---cccccceEEeeccCCceEeec--cCCCeeeEEEeCcee--EEe
Q 015001 272 ----------GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDLI--SFS 334 (414)
Q Consensus 272 ----------~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~~~~~--~~~ 334 (414)
....+++|+.|++++|.....++. .+++|+.|++++|..++.++. ..++|++|.+.++.. .+-
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 011235788888888766655553 678899999999988877753 457788888888755 222
Q ss_pred ccCCccceEEEEee
Q 015001 335 SNALSLSETSLCFS 348 (414)
Q Consensus 335 ~~~~~L~~L~l~~~ 348 (414)
...++|+.|+++.+
T Consensus 843 ~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 843 DISTNISDLNLSRT 856 (1153)
T ss_pred ccccccCEeECCCC
Confidence 33468899988766
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.15 E-value=5.6e-12 Score=119.69 Aligned_cols=229 Identities=18% Similarity=0.139 Sum_probs=121.6
Q ss_pred CCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+-++.+||+... ..++|...+ .-.++++|+|+++.+... ..+..+.+|.+|.|++|.++.- ....+.++|.|+.
T Consensus 149 ~alrslDLSrN~--is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNL--ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhch--hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcchhhh
Confidence 466777776532 223333223 336788888888877554 5566777888888888877322 2233566788888
Q ss_pred EEeeccCCc--ceeecCCCCCCceEEEeecCCCceE----eeeccceeeeEe------------------------eeec
Q 015001 191 LEIRSCEGL--ESLDLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAI------------------------HQTY 240 (414)
Q Consensus 191 L~l~~c~~~--~~l~i~~l~~L~~L~l~~~~~l~~~----~~~~p~L~~L~l------------------------~~~~ 240 (414)
|+|..|.-- +.+.+.++++|+.|.+..+ ++..+ ...+.+++.|++ +.+.
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na 304 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA 304 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh
Confidence 888776422 2234455666666666555 11111 112344444444 4433
Q ss_pred cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc----cccccccceEEeeccCCceEe-
Q 015001 241 LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILECCDKLIQV- 314 (414)
Q Consensus 241 ~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l----~~~~~~L~~L~l~~c~~l~~~- 314 (414)
...+. .....+++|+.|+++++.+..-.-. .+..+..|+.|.|+.. .+..+ .....+|+.|++..+....-+
T Consensus 305 I~rih~d~WsftqkL~~LdLs~N~i~~l~~~-sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 305 IQRIHIDSWSFTQKLKELDLSSNRITRLDEG-SFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hheeecchhhhcccceeEeccccccccCChh-HHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 11111 1233455566666655554431111 1233444555555542 11111 124566666666665443222
Q ss_pred -----eccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001 315 -----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 315 -----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
..+.|.|++|.+.|+.. ..+...++||+|++..|
T Consensus 383 Daa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 23456677777777765 45566677777777655
No 8
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.5e-11 Score=113.07 Aligned_cols=193 Identities=16% Similarity=0.144 Sum_probs=137.1
Q ss_pred CCCcccEEEecCcccCCCC---ccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcc---eeecCCCCC
Q 015001 137 YVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLSN 209 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~---~l~i~~l~~ 209 (414)
+.++|+...|.++.+..+. ....||+++.|+|+++-+ ....+..++..+|+||.|.|+.|.... ......++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3577888888888776553 577899999999999988 667788899999999999999885542 112224689
Q ss_pred CceEEEeec----CCCceEeeeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001 210 LKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (414)
Q Consensus 210 L~~L~l~~~----~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (414)
|+.|.++.| ..+..+...+|+|+.|++.++. ..........+..|++|+|+++.+.+.+.......+|.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 999999999 2334455689999999999884 11122334557799999999888766544445788999999999
Q ss_pred ccccc--cc-------cccccccccceEEeeccCC--ceEe--eccCCCeeeEEEeCc
Q 015001 285 TKCHK--LT-------SVRISSPCLKTLILECCDK--LIQV--EIETPNLSIFKYHGD 329 (414)
Q Consensus 285 ~~c~~--~~-------~l~~~~~~L~~L~l~~c~~--l~~~--~~~~p~L~~l~~~~~ 329 (414)
+.|.. +. .....+|+|+.|++..+.. ..++ ....++|+.+.+.+.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 98621 11 1123689999999988765 2222 123356666655544
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.02 E-value=8e-11 Score=110.45 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=91.2
Q ss_pred CCCeEEEEEecCC---ccccCCccccCCCcccEEEecCcccCC--C------CccccCcccceeEeeEEEcCh---HHHH
Q 015001 114 SEVKELVLVHWRS---ERRNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIA 179 (414)
Q Consensus 114 ~~l~~L~l~~~~~---~~~~lp~~~~~~~~L~~L~L~~~~~~~--~------~~~~~l~~L~~L~L~~~~~~~---~~l~ 179 (414)
.+++++++..+.. ....++..+...++|++|+++++.+.. . .....+++|+.|+++++.+.. ..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 3588888877443 122355555566778888888776542 1 223446688888888777632 2233
Q ss_pred HHHhCCCcccEEEeeccCCcc----ee--ecCCC-CCCceEEEeecCCCc-----eEe---eeccceeeeEeeeecccc-
Q 015001 180 SLISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDIK-----RVE---IKTSNVNALAIHQTYLFP- 243 (414)
Q Consensus 180 ~ll~~~p~Le~L~l~~c~~~~----~l--~i~~l-~~L~~L~l~~~~~l~-----~~~---~~~p~L~~L~l~~~~~~~- 243 (414)
.+..+ ++|++|++++|.... .+ .+..+ ++|+.|++++| .+. .+. ..+++|++|+++++....
T Consensus 103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 33334 568888887775431 00 12334 67777777776 222 111 123456666665554110
Q ss_pred ----eeeeccccccCceeEeeccCCchHH---HHhhhccCCCCcEEecccc
Q 015001 244 ----IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 244 ----~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (414)
+...+..+++|++|+++++.+.+.. +...+..+++|+.|++++|
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 1111233346666666655554332 2233444556666666654
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.01 E-value=3.2e-10 Score=107.99 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=50.1
Q ss_pred ccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc--cccccc-ccccccceE
Q 015001 228 TSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH--KLTSVR-ISSPCLKTL 303 (414)
Q Consensus 228 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~--~~~~l~-~~~~~L~~L 303 (414)
+|+|+.|++..+...-+ ...|.++++|+.|.+..+++..-. .+.+-.+.++++|+|.... .+..=+ ..+..|++|
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L 298 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL 298 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhh
Confidence 45555555555441111 223455555555555544433200 0122334555555555421 111111 144555666
Q ss_pred EeeccCCceEe----eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001 304 ILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 304 ~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~ 349 (414)
+++.+..- .+ +--++.|+.|+++.+.. -.+.-+..|++|.++.|+
T Consensus 299 ~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 299 DLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS 352 (873)
T ss_pred ccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence 65554321 11 12224455555544433 223334555555555553
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.2e-11 Score=105.81 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=101.4
Q ss_pred cceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEee-----eccceeeeE
Q 015001 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALA 235 (414)
Q Consensus 163 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~ 235 (414)
|+.|+|++..++...+..+++.|.+|+.|.|.+....+.+ .+..-.+|+.|+++.|+++..... +|..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5555555555555555555555555555555554433322 122224556666665554443332 455566666
Q ss_pred eeeecc-cc-eeeec-cccccCceeEeeccC--CchHHHHhhhccCCCCcEEecccccccccc----cccccccceEEee
Q 015001 236 IHQTYL-FP-IEVNV-SSCGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILE 306 (414)
Q Consensus 236 l~~~~~-~~-~~~~~-~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l----~~~~~~L~~L~l~ 306 (414)
++.|.. .+ +...+ .--++|+.|+++|+. +....+..+...||+|.+|+|+.|..++.- ...++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 655541 11 11111 123577777777654 333456777889999999999998666552 2378999999999
Q ss_pred ccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEee-cc
Q 015001 307 CCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFS-SH 350 (414)
Q Consensus 307 ~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~-~~ 350 (414)
-|..+..- ....+...|+|..|++... ++
T Consensus 347 RCY~i~p~---------------~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 347 RCYDIIPE---------------TLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhcCCChH---------------HeeeeccCcceEEEEeccccCc
Confidence 99776311 0035566777888888776 44
No 12
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.87 E-value=1.2e-09 Score=70.82 Aligned_cols=35 Identities=34% Similarity=0.746 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (414)
Q Consensus 12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw 46 (414)
|+.||+||+.+||+||+.+|++++++|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=1.4e-09 Score=101.94 Aligned_cols=197 Identities=21% Similarity=0.119 Sum_probs=114.9
Q ss_pred CCCeEEEEEecCCc-----cccCCccccCCCcccEEEecCcccCCC--CccccC---cccceeEeeEEEcChHHHHH---
Q 015001 114 SEVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS--- 180 (414)
Q Consensus 114 ~~l~~L~l~~~~~~-----~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l---~~L~~L~L~~~~~~~~~l~~--- 180 (414)
++++++++...... ...++..+..+++|++|++++|.+... .....+ ++|+.|++++|.+++.....
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 35777766552211 112233444567888888888766421 222222 44888888888775443332
Q ss_pred HHhCC-CcccEEEeeccCCcce----e--ecCCCCCCceEEEeecCCCc-----eEe---eeccceeeeEeeeecccc--
Q 015001 181 LISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSDIK-----RVE---IKTSNVNALAIHQTYLFP-- 243 (414)
Q Consensus 181 ll~~~-p~Le~L~l~~c~~~~~----l--~i~~l~~L~~L~l~~~~~l~-----~~~---~~~p~L~~L~l~~~~~~~-- 243 (414)
.+..+ ++|++|++.+|..... + .+..+++|+.|++++| .+. .+. ...++|++|+++++...+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 34455 7888888888764411 1 2333567888888877 222 111 133578888888775211
Q ss_pred ---eeeeccccccCceeEeeccCCchHHHHhhhcc----CCCCcEEeccccccc----ccc---cccccccceEEeeccC
Q 015001 244 ---IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSV---RISSPCLKTLILECCD 309 (414)
Q Consensus 244 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~~----~~l---~~~~~~L~~L~l~~c~ 309 (414)
+...+..+++|++|+++++.+.+..+..+... .+.|+.|++++|... ..+ ...+++|+.+++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 12235567889999998888877555544443 368888888887432 111 1234677777777765
Q ss_pred Cc
Q 015001 310 KL 311 (414)
Q Consensus 310 ~l 311 (414)
.-
T Consensus 290 l~ 291 (319)
T cd00116 290 FG 291 (319)
T ss_pred Cc
Confidence 43
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=2.1e-08 Score=102.53 Aligned_cols=218 Identities=16% Similarity=0.067 Sum_probs=101.5
Q ss_pred HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
...+-..|++... ....+|..+. .+|+.|.+++|.+...+ ...++|++|++++|.++. +. ...++|++|
T Consensus 199 l~~~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L 267 (788)
T PRK15387 199 LNNGNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLEL 267 (788)
T ss_pred hcCCCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Cccccccee
Confidence 3345556666553 2335666543 36777777776654322 124677777777766531 11 113455555
Q ss_pred EeeccCCc-------------------ceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeecccc-
Q 015001 192 EIRSCEGL-------------------ESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSC- 251 (414)
Q Consensus 192 ~l~~c~~~-------------------~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~- 251 (414)
++.+|... ..+.. ..++|+.|++++| .+..++...++|+.|.++++.... ++.+
T Consensus 268 ~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~----LP~lp 341 (788)
T PRK15387 268 SIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTS----LPTLP 341 (788)
T ss_pred eccCCchhhhhhchhhcCEEECcCCccccccc-cccccceeECCCC-ccccCCCCcccccccccccCcccc----ccccc
Confidence 55554221 11100 1245555555555 222222222234444444333111 1111
Q ss_pred ccCceeEeeccCCchHHHHh-----------------hhccCCCCcEEecccccccccccccccccceEEeeccCCceEe
Q 015001 252 GNLKCLKFDFLPIEDEWLCN-----------------GISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~ 314 (414)
++|+.|++++|.+.. ++. +....++|+.|+++++ .+..++...++|+.|++++|. +..+
T Consensus 342 ~~Lq~LdLS~N~Ls~--LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssI 417 (788)
T PRK15387 342 SGLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSL 417 (788)
T ss_pred cccceEecCCCccCC--CCCCCcccceehhhccccccCcccccccceEEecCC-cccCCCCcccCCCEEEccCCc-CCCC
Confidence 256666666655442 111 0111124555555553 223333334556666666653 2233
Q ss_pred eccCCCeeeEEEeCcee----EEeccCCccceEEEEeecc
Q 015001 315 EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 315 ~~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~~~ 350 (414)
+....+|+.|.+.++.. ..+.++++|+.|+++.|+-
T Consensus 418 P~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 418 PMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence 32223455555555444 2345677888888887743
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.69 E-value=1.7e-10 Score=110.64 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=103.0
Q ss_pred CCCeEEEEEecCCccccCCcccc-CCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
+|.-.|+|++ .....+|..++ +...|-.|+|+.+++.. |+....+..|++|.|+++......+.. +.++.+|+.|
T Consensus 126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence 4666666655 33445666544 35667777777777643 355666677777777777664444433 3344455555
Q ss_pred EeeccCCc-cee--ecCC-----------------------CCCCceEEEeecCCCceEee---eccceeeeEeeeeccc
Q 015001 192 EIRSCEGL-ESL--DLVN-----------------------LSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLF 242 (414)
Q Consensus 192 ~l~~c~~~-~~l--~i~~-----------------------l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~ 242 (414)
++++.... ..+ ++.. +++|+.|+++++ .+..+.. .-.+||+|+++.+...
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSRNQLT 281 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhccccchhc
Confidence 55443211 000 1222 456666666665 3443332 2346666666666644
Q ss_pred ceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccCC
Q 015001 243 PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (414)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~ 310 (414)
.++..+..+++|+.|.+.++.+.-+.++..++.+.+|+.+...+. .++-++. .|++|+.|.++.+..
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccce
Confidence 445556666777777776666555555555555555555544441 2222222 456666666655443
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.65 E-value=6.8e-10 Score=106.64 Aligned_cols=230 Identities=17% Similarity=0.169 Sum_probs=126.0
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
.++-|.|+. .....+|..+..+.+|++|+++.+.+... .....+|.|+.+.++.+......+..-+-.+.-|..|+|
T Consensus 33 ~~~WLkLnr--t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNR--TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEech--hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 455555543 23446677777777777777777665433 445566777777777766633333322345556666666
Q ss_pred eccCCcce-eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHH
Q 015001 194 RSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW 268 (414)
Q Consensus 194 ~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (414)
+.+..-+. -.+....++-.|+++.+ .+..|+ +++..|-.|+++.+....++.....+.+|++|+++++.+....
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 66533210 11222355666666666 333333 3556666777777665555556666777777777777766555
Q ss_pred HHhhhccCCCCcEEecccc-ccccccc---ccccccceEEeeccCC--ceEeeccCCCeeeEEEeCceeEE----eccCC
Q 015001 269 LCNGISKLPLLEYLSMTKC-HKLTSVR---ISSPCLKTLILECCDK--LIQVEIETPNLSIFKYHGDLISF----SSNAL 338 (414)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~c-~~~~~l~---~~~~~L~~L~l~~c~~--l~~~~~~~p~L~~l~~~~~~~~~----~~~~~ 338 (414)
+.+ +....+|+.|++++. ..+.+++ ..+.+|..++++.+.. +.+.....++|+.|.++|+.+.. ...-.
T Consensus 190 LrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~ 268 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWE 268 (1255)
T ss_pred Hhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHh
Confidence 554 344555666666662 1222232 2445566666655432 12223444566666666665511 11124
Q ss_pred ccceEEEEee
Q 015001 339 SLSETSLCFS 348 (414)
Q Consensus 339 ~L~~L~l~~~ 348 (414)
.|+.|+++.|
T Consensus 269 ~lEtLNlSrN 278 (1255)
T KOG0444|consen 269 NLETLNLSRN 278 (1255)
T ss_pred hhhhhccccc
Confidence 5666666655
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.60 E-value=5.9e-08 Score=99.59 Aligned_cols=220 Identities=16% Similarity=0.154 Sum_probs=102.5
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
.+..+|++... ....+|..+. ++|+.|++++|.+...+. ..+++|++|++++|.++. +...+ .++|+.|++
T Consensus 178 ~~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEEC
Confidence 46667776552 2334554332 467777777776643221 123567777777766531 11101 235666666
Q ss_pred eccCCcceeecCCCCCCceEEEeecCCCceEeee-ccceeeeEeeeecccceeeec-------------------ccccc
Q 015001 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK-TSNVNALAIHQTYLFPIEVNV-------------------SSCGN 253 (414)
Q Consensus 194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~-------------------~~~~~ 253 (414)
++|... .+...-.++|+.|+++++ .+..++.. .++|+.|+++++....++..+ ...++
T Consensus 249 s~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~s 326 (754)
T PRK15370 249 SINRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPG 326 (754)
T ss_pred cCCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcccccc
Confidence 655322 111111134555555544 33322221 124555555444311111100 11245
Q ss_pred CceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc-cccccceEEeeccCCceEeeccCC-CeeeEEEeCcee
Q 015001 254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETP-NLSIFKYHGDLI 331 (414)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~~l~~~~~~~p-~L~~l~~~~~~~ 331 (414)
|+.|++.+|.+.. ++..+ .++|+.|+++++. +..++. -.++|+.|++++|.. ..++...+ +|+.+.+.++..
T Consensus 327 L~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~L 400 (754)
T PRK15370 327 LKTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNAL-TNLPENLPAALQIMQASRNNL 400 (754)
T ss_pred ceeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCCc
Confidence 6666666555432 11111 2567777777652 233332 235677777776642 23322221 345555554443
Q ss_pred --------EEeccCCccceEEEEeecc
Q 015001 332 --------SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 332 --------~~~~~~~~L~~L~l~~~~~ 350 (414)
......+.+..+.+..|+.
T Consensus 401 ~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 401 VRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred ccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 1223346777888877754
No 18
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.7e-09 Score=95.18 Aligned_cols=147 Identities=22% Similarity=0.174 Sum_probs=81.6
Q ss_pred CCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCc
Q 015001 137 YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLK 211 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~ 211 (414)
.+++|+.|+++.+.+..+ ..-..++.||+|.|+.|.++..++.+++..||+|+.|.+..|.... ..+...+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 457777777777766544 2234577888888888888878888888888888888888775321 11122246777
Q ss_pred eEEEeecCCCc----eEeeeccceeeeEeeeeccccee-------eeccccccCceeEeeccCCchHHHHhhhccCCCCc
Q 015001 212 EIILVNTSDIK----RVEIKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (414)
Q Consensus 212 ~L~l~~~~~l~----~~~~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 280 (414)
.|+++++..+. .....+|.|+-|.++.+....+. .....+|+|+.|++..+.+.+.....-+...++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 77777762111 11224556665555544411110 01233556666666555554322222233344444
Q ss_pred EEe
Q 015001 281 YLS 283 (414)
Q Consensus 281 ~L~ 283 (414)
.|.
T Consensus 330 ~l~ 332 (505)
T KOG3207|consen 330 HLR 332 (505)
T ss_pred hhh
Confidence 444
No 19
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=1.5e-09 Score=99.60 Aligned_cols=249 Identities=18% Similarity=0.220 Sum_probs=160.3
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCcc-ccCCccccCCCcccEEEecCcccCCC----CccccCcccceeEeeEEEc-C
Q 015001 101 ASLAGRCLGLAIESEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-D 174 (414)
Q Consensus 101 ~~~i~~~l~~~~~~~l~~L~l~~~~~~~-~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~ 174 (414)
...+...+..+- ..++++.+..+.... ..+-....+|+++++|.+.+|...+. .....|++|+.|+|..|.. +
T Consensus 126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred CcceehHhhhhc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 334444444333 578888888754333 33444456789999998888864333 3456688899999988665 8
Q ss_pred hHHHHHHHhCCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCc-----eEeeeccceeeeEeeeec---cc
Q 015001 175 DQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTY---LF 242 (414)
Q Consensus 175 ~~~l~~ll~~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~-----~~~~~~p~L~~L~l~~~~---~~ 242 (414)
+..++.+...||+|++|.++.|+.+..- ...++..++.+...+|..+. .....++-+..+++..|. +.
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 8888888889999999999988776431 23345667777777783221 122234445555544443 11
Q ss_pred ceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEeccccccccc-----ccccccccceEEeeccCCce----
Q 015001 243 PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTS-----VRISSPCLKTLILECCDKLI---- 312 (414)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~-----l~~~~~~L~~L~l~~c~~l~---- 312 (414)
.++..-..+..|+.|+.+++. +.+..+..+..++++|+.|.+..|..+.+ +..+++.|+.+++..|....
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 122223356788888887654 55666777778899999999999866544 34488999999998887643
Q ss_pred -EeeccCCCeeeEEEeCcee------E----EeccCCccceEEEEeecc
Q 015001 313 -QVEIETPNLSIFKYHGDLI------S----FSSNALSLSETSLCFSSH 350 (414)
Q Consensus 313 -~~~~~~p~L~~l~~~~~~~------~----~~~~~~~L~~L~l~~~~~ 350 (414)
++...+|.|+.+.++.+.. . .-..+..|+.+.+...+.
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 3456667788887775543 1 112245566666655543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.49 E-value=2.3e-07 Score=95.36 Aligned_cols=119 Identities=15% Similarity=0.057 Sum_probs=78.9
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~ 218 (414)
.+...|++++..+...+.. -.++|+.|+|++|.++. +... .+++|+.|++++|.. ..+.....++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~L-tsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQL-TSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCcc-ccCChhhhccccEEECcCC
Confidence 4678899988766532211 12579999999998742 2211 236899999998854 3332222368999999998
Q ss_pred CCCceEeee-ccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001 219 SDIKRVEIK-TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 219 ~~l~~~~~~-~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (414)
.+..++.. ..+|+.|+++++....++..+ .++|+.|++++|.+..
T Consensus 252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT 297 (754)
T ss_pred -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc
Confidence 45555432 347999999987743333323 3589999999887653
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.42 E-value=2.8e-08 Score=89.48 Aligned_cols=239 Identities=18% Similarity=0.159 Sum_probs=120.8
Q ss_pred hhHHHHHHHH-HhCCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC------------CccccCcccce
Q 015001 102 SLAGRCLGLA-IESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLRK 165 (414)
Q Consensus 102 ~~i~~~l~~~-~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~~ 165 (414)
+..+...... ....+++++++..+... ..+-..+.+-++|+..+++.-...-+ .....+|.|++
T Consensus 17 ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ 96 (382)
T KOG1909|consen 17 EDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQK 96 (382)
T ss_pred hhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeE
Confidence 3444444433 23588888888743211 12333445557888888877432111 23456789999
Q ss_pred eEeeEEEcC---hHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeec
Q 015001 166 LALREVCAD---DQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTY 240 (414)
Q Consensus 166 L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~ 240 (414)
|+|+.|.++ ...+..++++|..|++|.+.+|.-...- .++ ..|..|. ......+.|.|+.+....+.
T Consensus 97 ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~------~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 97 LDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA------VNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred eeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH------HHhccCCCcceEEEEeeccc
Confidence 999999883 4467778889999999999988533100 000 0111110 00011123445555544443
Q ss_pred cc--c---eeeeccccccCceeEeeccCCchH---HHHhhhccCCCCcEEecccccc-------cccccccccccceEEe
Q 015001 241 LF--P---IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISSPCLKTLIL 305 (414)
Q Consensus 241 ~~--~---~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------~~~l~~~~~~L~~L~l 305 (414)
.. + +...+...+.|+.+.+..+.|... .+...+..||+|+.|+|+.... +......+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 10 0 011233445555555555544332 2233345556666666555211 1111123445555555
Q ss_pred eccCCce--------EeeccCCCeeeEEEeCcee---------EEeccCCccceEEEEee
Q 015001 306 ECCDKLI--------QVEIETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 306 ~~c~~l~--------~~~~~~p~L~~l~~~~~~~---------~~~~~~~~L~~L~l~~~ 348 (414)
++|.--. .+.-..|+|+.+.+.++.+ ..+...|.|++|+++.|
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 5553211 1122345555555555543 33444678888888777
No 22
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.42 E-value=4.1e-08 Score=63.92 Aligned_cols=39 Identities=38% Similarity=0.677 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhcccc
Q 015001 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTF 49 (414)
Q Consensus 11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~ 49 (414)
.+++||+|++.+||++|+.+|+++++.|||+|+++....
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 356899999999999999999999999999999976553
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=7.6e-08 Score=86.71 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=134.7
Q ss_pred CCCCeeeEEEEEecCCCCCChhhHHHHHHHHHh--CCCeEEEEEe--cCCccccCCcc-------ccCCCcccEEEecCc
Q 015001 81 KMISIKKFSLELDLINSPENASLAGRCLGLAIE--SEVKELVLVH--WRSERRNLPEI-------IFYVESLHVLELSYC 149 (414)
Q Consensus 81 ~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~--~~l~~L~l~~--~~~~~~~lp~~-------~~~~~~L~~L~L~~~ 149 (414)
+...+.+++++-. ..+.-..+|+....+ +.+++.+++. .+....++|.. +..|+.|++|+||.|
T Consensus 28 ~~~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 28 PMDSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred ccCceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3456777666543 456677888877655 4777777765 33334455553 345789999999999
Q ss_pred ccCCC------CccccCcccceeEeeEEEcChHH------------HHHHHhCCCcccEEEeeccCCcce----e--ecC
Q 015001 150 KLQQP------SENVKLFSLRKLALREVCADDQA------------IASLISGCPLIEYLEIRSCEGLES----L--DLV 205 (414)
Q Consensus 150 ~~~~~------~~~~~l~~L~~L~L~~~~~~~~~------------l~~ll~~~p~Le~L~l~~c~~~~~----l--~i~ 205 (414)
-+.+. ....++.+|+.|.|.+|..+... ....+..-|.|+.+...+|..... + .+.
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~ 182 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ 182 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence 87654 23456899999999999884332 122344567888888877754421 1 233
Q ss_pred CCCCCceEEEeecC-CCceEe------eeccceeeeEeeeeccc-----ceeeeccccccCceeEeeccCCchHHH----
Q 015001 206 NLSNLKEIILVNTS-DIKRVE------IKTSNVNALAIHQTYLF-----PIEVNVSSCGNLKCLKFDFLPIEDEWL---- 269 (414)
Q Consensus 206 ~l~~L~~L~l~~~~-~l~~~~------~~~p~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~---- 269 (414)
.+++|+.+.+..+. ....+. ..+|+|+.|++.++..+ .+...++.+++|+.|++++|.+.+...
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 45788888877761 111111 15677777777766511 112235566777777777766554322
Q ss_pred HhhhccCCCCcEEeccccccccc----cc---ccccccceEEeeccCC
Q 015001 270 CNGISKLPLLEYLSMTKCHKLTS----VR---ISSPCLKTLILECCDK 310 (414)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~~~~~----l~---~~~~~L~~L~l~~c~~ 310 (414)
..+-...|+|+.|.+.++..... +. ..-|.|+.|++++|..
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 22223467777777777522211 11 1356677777766644
No 24
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.31 E-value=3.4e-07 Score=57.26 Aligned_cols=34 Identities=38% Similarity=0.692 Sum_probs=31.5
Q ss_pred CCHHHHHHHhccCChHHHHHhhhcccCchhhccc
Q 015001 15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (414)
Q Consensus 15 LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~ 48 (414)
||+|++.+||++++.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999986544
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=3.6e-07 Score=76.71 Aligned_cols=59 Identities=22% Similarity=0.169 Sum_probs=23.7
Q ss_pred ccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchHH--HHhhhccCCCCcEEeccc
Q 015001 228 TSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 228 ~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~ 286 (414)
+|+|++|.++++.... ....+..+|+|+.|++.+|++.... -..++..+|+|+.|+-..
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 4555555555544111 1123456677777777766655421 223456677777776544
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.28 E-value=1.8e-06 Score=88.51 Aligned_cols=194 Identities=16% Similarity=0.100 Sum_probs=106.4
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~ 218 (414)
..-..|+++.+.+...+. .-.++|+.|.+.+|.++. +. ...|+|++|++++|... .+.. ..++|+.|++..|
T Consensus 201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N~Lt-sLP~-lp~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGNQLT-SLPV-LPPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCCccC-cccC-cccccceeeccCC
Confidence 456778999987764322 112589999999988742 22 24689999999998432 2221 1367777777776
Q ss_pred CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh----------------hccC-CCCcE
Q 015001 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG----------------ISKL-PLLEY 281 (414)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----------------~~~~-~~L~~ 281 (414)
.+..++...++|+.|+++++....++. ..++|+.|++++|.+.. ++.+ +..+ ++|+.
T Consensus 273 -~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~--Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~ 346 (788)
T PRK15387 273 -PLTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPTLPSGLQE 346 (788)
T ss_pred -chhhhhhchhhcCEEECcCCccccccc---cccccceeECCCCcccc--CCCCcccccccccccCccccccccccccce
Confidence 344333333456666666555222221 23456666665555432 1110 0011 25666
Q ss_pred EecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEe-ccCCccceEEEEee
Q 015001 282 LSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFS-SNALSLSETSLCFS 348 (414)
Q Consensus 282 L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~-~~~~~L~~L~l~~~ 348 (414)
|+++++ .+..++...++|+.|.+++|. +..++...++|+.|.+.++....+ ...++|+.|+++.+
T Consensus 347 LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 347 LSVSDN-QLASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 412 (788)
T ss_pred EecCCC-ccCCCCCCCcccceehhhccc-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCC
Confidence 666663 233344444566666665543 223333334677777776654111 12357888888776
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.28 E-value=9.6e-08 Score=96.03 Aligned_cols=200 Identities=24% Similarity=0.238 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcC---hHH
Q 015001 102 SLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCAD---DQA 177 (414)
Q Consensus 102 ~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~---~~~ 177 (414)
..+.+|+..+. +|+.+..... ....+|..++...+|++|....|.+.-. +....+.+|++|+|..+.+. +..
T Consensus 254 ~~lp~wi~~~~--nle~l~~n~N--~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 254 SNLPEWIGACA--NLEALNANHN--RLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred hcchHHHHhcc--cceEecccch--hHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHH
Confidence 34556766543 6666666542 2255666666666666666666655432 33445788888888877662 111
Q ss_pred HH-------HHH--------------hCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEee----eccc
Q 015001 178 IA-------SLI--------------SGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSN 230 (414)
Q Consensus 178 l~-------~ll--------------~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~----~~p~ 230 (414)
+. .+- ...+.|+.|.+.+|...+.. .+.+.++||.|+++++ .+..++. ..+.
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEE 408 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHH
Confidence 11 000 02345566666666544322 2334578888888877 3333332 4567
Q ss_pred eeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc--c--cccccceEEee
Q 015001 231 VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--I--SSPCLKTLILE 306 (414)
Q Consensus 231 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~--~~~~L~~L~l~ 306 (414)
||.|.++|+....++..+..++.|++|...++.+.. +++ +..++.|+.++++.. .+..+. . ..|+|++|+++
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~--fPe-~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlS 484 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS--FPE-LAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLS 484 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee--chh-hhhcCcceEEecccc-hhhhhhhhhhCCCcccceeecc
Confidence 777888887755556666777777777776666543 333 455677777777763 222221 1 22677777777
Q ss_pred ccCC
Q 015001 307 CCDK 310 (414)
Q Consensus 307 ~c~~ 310 (414)
++..
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 7664
No 28
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.12 E-value=1.1e-06 Score=89.65 Aligned_cols=147 Identities=19% Similarity=0.198 Sum_probs=101.8
Q ss_pred CcccEEEecCcccCC---C-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001 139 ESLHVLELSYCKLQQ---P-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~ 214 (414)
.+|++|+++|...-. + ....-||+|++|.+.+..+...++..+..++|+|..|+++++....-..++.+++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 678888887743211 1 345668999999999998866668888889999999999987544333466678888887
Q ss_pred EeecCCCce-E---e-eeccceeeeEeeeeccccee-------eeccccccCceeEeeccCCchHHHHhhhccCCCCcEE
Q 015001 215 LVNTSDIKR-V---E-IKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (414)
Q Consensus 215 l~~~~~l~~-~---~-~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (414)
+.+- .+.. - . ..+.+|+.|+++........ ..-..+|+|+.||.++..+..+.+..++..-|+|+..
T Consensus 202 mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 7755 2221 1 1 25778888888876511111 1123488999999999998888888888878887776
Q ss_pred eccc
Q 015001 283 SMTK 286 (414)
Q Consensus 283 ~l~~ 286 (414)
..-.
T Consensus 281 ~~~~ 284 (699)
T KOG3665|consen 281 AALD 284 (699)
T ss_pred hhhh
Confidence 5443
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.06 E-value=2.1e-07 Score=93.62 Aligned_cols=198 Identities=14% Similarity=0.148 Sum_probs=101.2
Q ss_pred cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce-eecCCCCCCceEEEeec--CCCceEeeeccceeeeEee
Q 015001 161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH 237 (414)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~ 237 (414)
.+|.+++++.+.+. .+...+..|++||.+.+..+....- ..+....+|+.|.+..| +.+........+|++|++.
T Consensus 241 ~nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhh--cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 46778888777763 2336678888888888877654311 12222344444444444 1122222223344444444
Q ss_pred eecccceee------------------------ec--cccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc
Q 015001 238 QTYLFPIEV------------------------NV--SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (414)
Q Consensus 238 ~~~~~~~~~------------------------~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 291 (414)
.+....++. .+ ...+.|+.|.+.++.+++..++. +.++++|+.|+|++. -+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyN-rL~ 396 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYN-RLN 396 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh-hccccceeeeeeccc-ccc
Confidence 333111000 01 12356666666777766655543 667777777777773 122
Q ss_pred ccc----ccccccceEEeeccCC----------------------ceEe--eccCCCeeeEEEeCcee---EEecc--CC
Q 015001 292 SVR----ISSPCLKTLILECCDK----------------------LIQV--EIETPNLSIFKYHGDLI---SFSSN--AL 338 (414)
Q Consensus 292 ~l~----~~~~~L~~L~l~~c~~----------------------l~~~--~~~~p~L~~l~~~~~~~---~~~~~--~~ 338 (414)
.++ ..++.|++|.++++.. +..+ ....|.|+.++++.+.. ..-.+ .+
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p 476 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSP 476 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCc
Confidence 222 2556666666666542 1111 12334566666665544 11111 16
Q ss_pred ccceEEEEeecchhhhHHHHHHHH
Q 015001 339 SLSETSLCFSSHLMVNIEWVVEYF 362 (414)
Q Consensus 339 ~L~~L~l~~~~~~~~~~~~~~~~~ 362 (414)
.||.|+++.|...-.+.+.+..+.
T Consensus 477 ~LkyLdlSGN~~l~~d~~~l~~l~ 500 (1081)
T KOG0618|consen 477 NLKYLDLSGNTRLVFDHKTLKVLK 500 (1081)
T ss_pred ccceeeccCCcccccchhhhHHhh
Confidence 788888887754344445554443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.04 E-value=1.2e-06 Score=73.67 Aligned_cols=77 Identities=23% Similarity=0.199 Sum_probs=27.3
Q ss_pred ccceeeeEeeeecccceeeec-cccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc------cccccccc
Q 015001 228 TSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS------VRISSPCL 300 (414)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~------l~~~~~~L 300 (414)
+++|+.|+++++....+...+ ..+|+|++|+++++.+.+-.-...+..+|+|+.|++.+.+.... +...+|+|
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 455666666665532222122 34677777777777765422223355677777777776422211 11255666
Q ss_pred ceEE
Q 015001 301 KTLI 304 (414)
Q Consensus 301 ~~L~ 304 (414)
+.|+
T Consensus 143 k~LD 146 (175)
T PF14580_consen 143 KVLD 146 (175)
T ss_dssp SEET
T ss_pred heeC
Confidence 6665
No 31
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.01 E-value=8.2e-07 Score=88.17 Aligned_cols=126 Identities=21% Similarity=0.271 Sum_probs=82.3
Q ss_pred hCCCeEEEEEecCC-ccccCCccccCCCcccEEEecCc-ccCCC------CccccCcccceeEeeEEE-cChHHHHHHHh
Q 015001 113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS 183 (414)
Q Consensus 113 ~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~ 183 (414)
.++++++.+..+.. ....+-.....++.|+.|++++| ..... .....+++|+.|++.++. +++..+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35777777766322 11123344566889999999873 21111 344566889999999888 58888888888
Q ss_pred CCCcccEEEeeccCCccee---e-cCCCCCCceEEEeecCCC-----ceEeeeccceeeeEeee
Q 015001 184 GCPLIEYLEIRSCEGLESL---D-LVNLSNLKEIILVNTSDI-----KRVEIKTSNVNALAIHQ 238 (414)
Q Consensus 184 ~~p~Le~L~l~~c~~~~~l---~-i~~l~~L~~L~l~~~~~l-----~~~~~~~p~L~~L~l~~ 238 (414)
.||+||+|.+.+|..+... . ...+++|++|+++.|..+ ..+...+|+|+.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 8999999998888764322 1 223688999999988443 22223566666655443
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.00 E-value=1.4e-07 Score=76.69 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=45.9
Q ss_pred ccCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc-eeecCCCCCCce
Q 015001 135 IFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKE 212 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~-~l~i~~l~~L~~ 212 (414)
++.+.+++.|.++.+.+.. ++..+.+.+|+.|+++++++. .+..-++++|.|+.|.+.-+.... .-.++++|.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 4556667777777766543 355666777777777777652 233335666666666665442210 112344555555
Q ss_pred EEEeec
Q 015001 213 IILVNT 218 (414)
Q Consensus 213 L~l~~~ 218 (414)
|++.++
T Consensus 107 ldltyn 112 (264)
T KOG0617|consen 107 LDLTYN 112 (264)
T ss_pred hhcccc
Confidence 555554
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=2.2e-06 Score=75.87 Aligned_cols=192 Identities=17% Similarity=0.130 Sum_probs=132.1
Q ss_pred CCCeEEEEEecC-CccccCCccccCCCcccEEEecCcccCCCC--ccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
..++++++.... ..-.++.+.+.+++.|+.|+++.+.+..+. ......+|++|.|.+...+.......+...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 488999987522 222344555667899999999999887651 12466799999999988888888888999999999
Q ss_pred EEeeccCCc------ceeecCCCCCCceEEEeec-----CCCceEeeeccceeeeEeeeecccc--eeeeccccccCcee
Q 015001 191 LEIRSCEGL------ESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCL 257 (414)
Q Consensus 191 L~l~~c~~~------~~l~i~~l~~L~~L~l~~~-----~~l~~~~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 257 (414)
|+++.|..- .+..- ..+.++.|....| .....+....||+.++.+..++... .......+|.+--|
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~-~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIED-WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhccchhhhhccccccccc-cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 999877321 11111 1367888888888 2233344467999998888776221 12234456777788
Q ss_pred EeeccCCchHHHHhhhccCCCCcEEecccccccccc---------cccccccceEEee
Q 015001 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---------RISSPCLKTLILE 306 (414)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---------~~~~~~L~~L~l~ 306 (414)
.++.+.+...+...-+..||.|..|.+...+....+ ...+++++.|+=+
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 888888877666666899999999999884332222 1266777777644
No 34
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.92 E-value=8.9e-08 Score=77.83 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=31.6
Q ss_pred ccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c 196 (414)
..+|+.+....+|+.|++.++.+. .|.+..++|+|+.|++.-+... .+..-+.++|.||.|++.++
T Consensus 46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhcccc
Confidence 344555555555555555555442 2244455555555555544331 11222345555555555554
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.75 E-value=0.00015 Score=76.16 Aligned_cols=275 Identities=17% Similarity=0.134 Sum_probs=146.4
Q ss_pred hhhHHHHHHHHHhccccCCCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccE
Q 015001 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV 143 (414)
Q Consensus 64 ~~~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~ 143 (414)
..-+...|++.+...........++.++ .-...+.-|++......-+. .+-..+......|. ..+....+.
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~-~~~~~~~rr 527 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQ-VKSWNSVRR 527 (889)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccc-ccchhheeE
Confidence 3344566666663221111234444443 23445555665544333333 22222212223333 333466777
Q ss_pred EEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCC
Q 015001 144 LELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (414)
Q Consensus 144 L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~ 220 (414)
..+-++.+........++.|++|-+.++.. -......++..+|.|..|++++|.....+ .|+.+-+||.|+++.+ .
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-G 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-C
Confidence 777777665445566677888888888752 11222334567899999999988777655 4666788888888887 5
Q ss_pred CceEeee---ccceeeeEeeeecc-cceeeeccccccCceeEeeccCCch-HHHHhhhccCCCCcEEecccccc------
Q 015001 221 IKRVEIK---TSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHK------ 289 (414)
Q Consensus 221 l~~~~~~---~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~------ 289 (414)
+..++.. ...|.+|++..... ...+-....+++|+.|.+....... .....-+..+.+|+.+....+..
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l 686 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL 686 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh
Confidence 6666553 34455666655441 1112233447788888876554221 11112234444455444433211
Q ss_pred -------------------ccc---ccccccccceEEeeccCCceEee--------cc-CCCeeeEEEeCcee----EEe
Q 015001 290 -------------------LTS---VRISSPCLKTLILECCDKLIQVE--------IE-TPNLSIFKYHGDLI----SFS 334 (414)
Q Consensus 290 -------------------~~~---l~~~~~~L~~L~l~~c~~l~~~~--------~~-~p~L~~l~~~~~~~----~~~ 334 (414)
... ....+.+|+.|.|.+|...+... .. +|++.++....+.. ...
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 000 11245678888888887653211 11 34444444444433 444
Q ss_pred ccCCccceEEEEee
Q 015001 335 SNALSLSETSLCFS 348 (414)
Q Consensus 335 ~~~~~L~~L~l~~~ 348 (414)
..+|+|+.|.+...
T Consensus 767 ~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSC 780 (889)
T ss_pred hccCcccEEEEecc
Confidence 56788888888766
No 36
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1e-05 Score=82.66 Aligned_cols=34 Identities=38% Similarity=0.443 Sum_probs=14.2
Q ss_pred ccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
++|||..||+++.++.+- ..++.+.+|+.|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccCc---HHHhccccHHHHhccC
Confidence 444444444444444331 1233444444444444
No 37
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.62 E-value=8.8e-08 Score=87.81 Aligned_cols=196 Identities=18% Similarity=0.164 Sum_probs=101.8
Q ss_pred ccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-ecCC
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLVN 206 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-~i~~ 206 (414)
.++|..+.+..+|+.|+.+.+.+. .++..+.+-.|..|+..++++. .+..-+.+|..|..|.+.++...... ...+
T Consensus 104 s~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~ 181 (565)
T KOG0472|consen 104 SELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHIA 181 (565)
T ss_pred hhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHHH
Confidence 344444444455555555444332 2233444444444444444431 11111233444555555554332110 0111
Q ss_pred CCCCceEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001 207 LSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (414)
Q Consensus 207 l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (414)
...|++|+...+ .+..++- .+.+|+-|++..+....++ .|++|+.|++|+++.+.+.. .-.+....++++..|+
T Consensus 182 m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLD 258 (565)
T KOG0472|consen 182 MKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLD 258 (565)
T ss_pred HHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeee
Confidence 355666655544 3333433 2345555566665533333 78888888888888777643 2334566889999999
Q ss_pred cccccccccccc---cccccceEEeeccCCceEeeccCC--CeeeEEEeCcee
Q 015001 284 MTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETP--NLSIFKYHGDLI 331 (414)
Q Consensus 284 l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~~~~p--~L~~l~~~~~~~ 331 (414)
++.. .++.++. ...+|+.|+++++.. ..++.... .|+.+.+.|++.
T Consensus 259 LRdN-klke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnlhL~~L~leGNPl 309 (565)
T KOG0472|consen 259 LRDN-KLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNLHLKFLALEGNPL 309 (565)
T ss_pred cccc-ccccCchHHHHhhhhhhhcccCCcc-ccCCcccccceeeehhhcCCch
Confidence 9883 4455554 455688888887643 22332222 356666667765
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=1.1e-05 Score=71.63 Aligned_cols=124 Identities=21% Similarity=0.180 Sum_probs=79.3
Q ss_pred CcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec--CCCceEeeeccceeeeEee
Q 015001 160 LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIH 237 (414)
Q Consensus 160 l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~ 237 (414)
+..|+.++|++|.++ .++.-+.-.|.++.|.++.|.....=++..+++|+.|+++++ ..+..+....-|.++|.+.
T Consensus 283 Wq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred Hhhhhhccccccchh--hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 567888888888762 233334457888888888875432223556788888888887 3333444456778888887
Q ss_pred eecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 238 QTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
++.... ...++.+-+|..|+++++.|..-.-...++++|-|++|.+.+
T Consensus 361 ~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 361 QNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 776221 123445567777888877776544344466666666666665
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.47 E-value=3e-05 Score=81.30 Aligned_cols=199 Identities=22% Similarity=0.254 Sum_probs=121.7
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
.+.++.|+++. .....++|..+..+-+|++|++++..+. .|.+...+..|.+|++..+..-.. +..+...+++|+.|
T Consensus 570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLES-IPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccc-ccchhhhcccccEE
Confidence 45777777765 3456788988888889999999988764 446778888888888887654211 13445568899999
Q ss_pred EeeccC-Cccee---ecCCCCCCceEEEeecCC--CceEeeeccceee----eEeeeecccceeeeccccccCceeEeec
Q 015001 192 EIRSCE-GLESL---DLVNLSNLKEIILVNTSD--IKRVEIKTSNVNA----LAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (414)
Q Consensus 192 ~l~~c~-~~~~l---~i~~l~~L~~L~l~~~~~--l~~~~~~~p~L~~----L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (414)
.+.... ..... .+..+.+|+.+++..++. +..+ ...++|.+ +.+.++........+..+.+|+.|.+.+
T Consensus 648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 648 RLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 887653 11111 233456666666655422 0111 12334432 2222222223345677888999999988
Q ss_pred cCCchHHHH---h-hhc-cCCCCcEEeccccccccccc--ccccccceEEeeccCCceEe
Q 015001 262 LPIEDEWLC---N-GIS-KLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 262 ~~~~~~~~~---~-~~~-~~~~L~~L~l~~c~~~~~l~--~~~~~L~~L~l~~c~~l~~~ 314 (414)
+.+.+.... . ... .|+++..+.+..|.....+. .-.|+|+.|.+.+|...++.
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 877542110 0 011 25566666666776666554 36688888888888765443
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.45 E-value=0.00021 Score=63.66 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=21.2
Q ss_pred eeeEEEeCcee------EEeccCCccceEEEEeecc
Q 015001 321 LSIFKYHGDLI------SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 321 L~~l~~~~~~~------~~~~~~~~L~~L~l~~~~~ 350 (414)
|..|+..++.+ ..++++|.|+.+.+..|+-
T Consensus 376 LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 376 LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred heeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 44445555554 6788899999999988843
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.39 E-value=2.4e-05 Score=77.30 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=111.2
Q ss_pred ccCCCCeeeEEEEEecCCCCCChhhHHHHHHHH-HhCCCeEEEEEec-CCccccCCccccCCCcccEEEecCcccCCCCc
Q 015001 79 QRKMISIKKFSLELDLINSPENASLAGRCLGLA-IESEVKELVLVHW-RSERRNLPEIIFYVESLHVLELSYCKLQQPSE 156 (414)
Q Consensus 79 ~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~-~~~~l~~L~l~~~-~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~ 156 (414)
...+.+++.|+...... .+...+...-... +....+.+.+... ...+.+ |-.++.+.+|++|.+.+|.+....+
T Consensus 51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh
Confidence 34567888887655432 2233333322211 1235555665543 233333 7788999999999999997654311
Q ss_pred ccc---------------------------------CcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceee
Q 015001 157 NVK---------------------------------LFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (414)
Q Consensus 157 ~~~---------------------------------l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~ 203 (414)
... +-.|.+.+.++|.. ..++.-+.-.|.||.|+|+.|.....-.
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence 111 12333444444433 1122223345777777777775543224
Q ss_pred cCCCCCCceEEEeec--CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcE
Q 015001 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (414)
Q Consensus 204 i~~l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (414)
+.-+++|++|+|+++ ..++.+....-+|..|.+.++.... ...+.++.+|+.||+++|-+.+..-...+..+..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 445678888888776 3333333333447777777776222 2345667777778887776665443334455556666
Q ss_pred Eeccc
Q 015001 282 LSMTK 286 (414)
Q Consensus 282 L~l~~ 286 (414)
|.|.+
T Consensus 284 L~LeG 288 (1096)
T KOG1859|consen 284 LWLEG 288 (1096)
T ss_pred HhhcC
Confidence 66666
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00015 Score=64.51 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=88.9
Q ss_pred CcccEEEecCcccCCC----CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee-c-CCCCCCc
Q 015001 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD-L-VNLSNLK 211 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~-i-~~l~~L~ 211 (414)
.-++-|.+.+|.++.. .....+..++.|+|.+|.+ ....+..++.++|.|+.|+|+.|.....+. . ....+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3455677778877655 2234567899999999999 556788889999999999999876554331 1 1246888
Q ss_pred eEEEeec----CCCceEeeeccceeeeEeeeecccceee---ecc-ccccCceeEeeccCCc-hHHHHhhhccCCCCcEE
Q 015001 212 EIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV---NVS-SCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYL 282 (414)
Q Consensus 212 ~L~l~~~----~~l~~~~~~~p~L~~L~l~~~~~~~~~~---~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L 282 (414)
.|.+.+. .......-+.|.++.|+++.+....+.. ... --+.+++|++..|... +.....+...||++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8888876 1122222356777777666553110000 011 1134555555444432 12233444557777766
Q ss_pred ecccc
Q 015001 283 SMTKC 287 (414)
Q Consensus 283 ~l~~c 287 (414)
.+..|
T Consensus 205 ~v~e~ 209 (418)
T KOG2982|consen 205 FVCEG 209 (418)
T ss_pred eeecC
Confidence 66654
No 43
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.32 E-value=2.5e-05 Score=77.58 Aligned_cols=148 Identities=20% Similarity=0.233 Sum_probs=91.4
Q ss_pred CcccEEEecCcccCCC-----CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeecc-CCcce------eecC
Q 015001 139 ESLHVLELSYCKLQQP-----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSC-EGLES------LDLV 205 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~-----~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c-~~~~~------l~i~ 205 (414)
..+..+++..+..... .....+++|+.|.+.++.. ++..+..+...||+|++|++++| ..... ....
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 4455555555432211 2233478888888888865 65567777888899999988873 22211 1122
Q ss_pred CCCCCceEEEeecCCCceEee-----eccceeeeEeeeecc---cceeeeccccccCceeEeeccCC-chHHHHhhhccC
Q 015001 206 NLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYL---FPIEVNVSSCGNLKCLKFDFLPI-EDEWLCNGISKL 276 (414)
Q Consensus 206 ~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~---~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~ 276 (414)
.+++|+.|+++.|..+....+ .+|+|++|.+.++.. ..+......+++|++|+++++.. .+..+......|
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 358888888888843443332 467888888666551 22223345678888888886664 355566666668
Q ss_pred CCCcEEeccc
Q 015001 277 PLLEYLSMTK 286 (414)
Q Consensus 277 ~~L~~L~l~~ 286 (414)
++|+.|.+..
T Consensus 321 ~~l~~l~~~~ 330 (482)
T KOG1947|consen 321 PNLRELKLLS 330 (482)
T ss_pred cchhhhhhhh
Confidence 8777766554
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.22 E-value=0.00011 Score=64.45 Aligned_cols=239 Identities=17% Similarity=0.062 Sum_probs=118.1
Q ss_pred hhhHHHHHHHH-HhCCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC------------CccccCcccc
Q 015001 101 ASLAGRCLGLA-IESEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP------------SENVKLFSLR 164 (414)
Q Consensus 101 ~~~i~~~l~~~-~~~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------------~~~~~l~~L~ 164 (414)
..++...+... ....+.+++++..+... ..+...+.+-.+|+..+++.-...-. .....||.|+
T Consensus 16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 34555555443 34577777777632211 12333344446666666665321100 2344566666
Q ss_pred eeEeeEEEc---ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCceEEEeecCCCceEeeeccceeeeEeee
Q 015001 165 KLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ 238 (414)
Q Consensus 165 ~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~ 238 (414)
+.+|+.|.+ ....+..++++...|++|.+.+|... .+ .++ ..|.+|- ...-..+.|.|+++....
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rig--kal~~la------~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIG--KALFHLA------YNKKAADKPKLEVVICGR 166 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHH--HHHHHHH------HHhhhccCCCceEEEecc
Confidence 666666666 22344555666666666666655321 11 011 0000000 000112456777777666
Q ss_pred ecc--ccee---eeccccccCceeEeeccCCchHHHHh----hhccCCCCcEEecccccc--c-----ccccccccccce
Q 015001 239 TYL--FPIE---VNVSSCGNLKCLKFDFLPIEDEWLCN----GISKLPLLEYLSMTKCHK--L-----TSVRISSPCLKT 302 (414)
Q Consensus 239 ~~~--~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~c~~--~-----~~l~~~~~~L~~ 302 (414)
+.. .+.. ..+..-.+|+.+.+..+.|....+.. .+..+.+|+.|+|..... . .......+.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 551 1110 11222247777777777776543322 235577788888777311 1 111124456777
Q ss_pred EEeeccCCceE----e-----eccCCCeeeEEEeCcee------------EEeccCCccceEEEEee
Q 015001 303 LILECCDKLIQ----V-----EIETPNLSIFKYHGDLI------------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 303 L~l~~c~~l~~----~-----~~~~p~L~~l~~~~~~~------------~~~~~~~~L~~L~l~~~ 348 (414)
|.+.+|-...+ + ....|+|..|...-+.. +.-.++|-|..|.+..|
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 87777754221 1 23457777665543221 34456788888888766
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.16 E-value=3.1e-06 Score=77.95 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCCCceEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCc
Q 015001 206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (414)
Q Consensus 206 ~l~~L~~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (414)
++++|..|+++++ ++..++. -..+|++|+++.+.....+..++++ .|+.|.+.|+.+.
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 4677888888877 5555553 3456888888888766677788888 8888888888754
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.13 E-value=0.0004 Score=67.19 Aligned_cols=170 Identities=21% Similarity=0.252 Sum_probs=100.5
Q ss_pred ccCCCcccEEEecCcccCCC-CccccC-cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecC-CCCCCc
Q 015001 135 IFYVESLHVLELSYCKLQQP-SENVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLK 211 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~-~l~~L~ 211 (414)
+...+.++.|++.++.+... +....+ ++|+.|+++++.+.. +..-+..+|+|+.|.+.+|....--... ..++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 33346678888887766443 333344 278888888877632 2122567888888888887654322222 457888
Q ss_pred eEEEeecCCCceEeee--ccc-eeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001 212 EIILVNTSDIKRVEIK--TSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (414)
Q Consensus 212 ~L~l~~~~~l~~~~~~--~p~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (414)
.|+++++ .+..++.. .++ |+++.++++........+..+.++..+.+.++.+.. +...+...+++++|+++++.
T Consensus 190 ~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccc
Confidence 8888877 55555542 343 788887777322233445666666666665555443 13345666778888777741
Q ss_pred ccccc--cccccccceEEeeccCC
Q 015001 289 KLTSV--RISSPCLKTLILECCDK 310 (414)
Q Consensus 289 ~~~~l--~~~~~~L~~L~l~~c~~ 310 (414)
+..+ .....+++.|+++++..
T Consensus 267 -i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 267 -ISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred -ccccccccccCccCEEeccCccc
Confidence 2222 23556777777766443
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.08 E-value=0.00014 Score=49.83 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=29.0
Q ss_pred cccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (414)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c 196 (414)
+|++|++++|.+... ..+..+++|++|+++++.+..-. ...+..+|+|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 566666666654321 34455666666666655542111 112455666666666555
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.02 E-value=0.0014 Score=62.16 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=66.6
Q ss_pred cCcccceeEeeEEEcChHHHHHHHhCCC-cccEEEeeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEee
Q 015001 159 KLFSLRKLALREVCADDQAIASLISGCP-LIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIH 237 (414)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~ll~~~p-~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~ 237 (414)
.+++++.|++++|.+. .+. ..| +|++|.+.+|..+..+.-.-.++|++|.+.+|..+..+ .++|++|.+.
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~ 120 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIK 120 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeC
Confidence 3567777777766431 111 223 57777777776653332111256777777777544432 2456666665
Q ss_pred eecccceeeeccccc-cCceeEeeccCCc-hHHHHhhhccC-CCCcEEecccccccccccccccccceEEeecc
Q 015001 238 QTYLFPIEVNVSSCG-NLKCLKFDFLPIE-DEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC 308 (414)
Q Consensus 238 ~~~~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~~~~~~~-~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c 308 (414)
+... ..+..+| +|++|.+.++... ..... ..+ ++|+.|.+++|........-..+|+.|.++.+
T Consensus 121 ~n~~----~~L~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 121 GSAT----DSIKNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCC----cccccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 4321 1223332 6666666432210 00000 112 46777877777543211123356777776553
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.92 E-value=0.00087 Score=45.76 Aligned_cols=15 Identities=27% Similarity=0.246 Sum_probs=6.5
Q ss_pred ccccccCceeEeecc
Q 015001 248 VSSCGNLKCLKFDFL 262 (414)
Q Consensus 248 ~~~~~~L~~L~l~~~ 262 (414)
+.++++|++|+++++
T Consensus 45 f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 45 FSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTSTTESEEEETSS
T ss_pred HcCCCCCCEEeCcCC
Confidence 334444444444443
No 50
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.82 E-value=0.00018 Score=66.47 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=42.9
Q ss_pred hccCCCCcEEeccccccccccc----ccccccceEEeeccCC--c-eEeeccCCCeeeEEEeCcee-----EEeccCCcc
Q 015001 273 ISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDK--L-IQVEIETPNLSIFKYHGDLI-----SFSSNALSL 340 (414)
Q Consensus 273 ~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~~--l-~~~~~~~p~L~~l~~~~~~~-----~~~~~~~~L 340 (414)
+..+|+|+.|++++. .+..+. .....++.|.+..+.. . ..+..+..+|+.|.+.|+.+ ..++.+.+|
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 344566666666663 112221 1334555555544432 1 11233445677777777766 567777888
Q ss_pred ceEEEEeecc
Q 015001 341 SETSLCFSSH 350 (414)
Q Consensus 341 ~~L~l~~~~~ 350 (414)
.+|++-.|+.
T Consensus 349 ~~l~l~~Np~ 358 (498)
T KOG4237|consen 349 STLNLLSNPF 358 (498)
T ss_pred eeeehccCcc
Confidence 8888877743
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.75 E-value=0.00081 Score=65.07 Aligned_cols=166 Identities=22% Similarity=0.235 Sum_probs=113.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCC-cccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
..++.+++.. .....+|....... +|+.|+++++.+... .....+++|+.|++.++.+.+ +.......++|+.|
T Consensus 116 ~~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhe
Confidence 3566666654 34557777666664 999999999988754 467899999999999998743 33323478999999
Q ss_pred EeeccCCcceeec--CCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH
Q 015001 192 EIRSCEGLESLDL--VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (414)
Q Consensus 192 ~l~~c~~~~~l~i--~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (414)
.++++... .+.. .....|+.|.+.++..+..+. ....++..+.+..+........++.+++++.|++.++.+..-
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence 99988543 2211 233458888888773222222 245566666655554322245677888899999998887663
Q ss_pred HHHhhhccCCCCcEEecccc
Q 015001 268 WLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c 287 (414)
.. +....+++.|++++.
T Consensus 271 ~~---~~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS---LGSLTNLRELDLSGN 287 (394)
T ss_pred cc---ccccCccCEEeccCc
Confidence 22 667788999998873
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.67 E-value=0.00022 Score=62.45 Aligned_cols=104 Identities=26% Similarity=0.266 Sum_probs=72.1
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEe
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l 193 (414)
.++++.++++....-.+....-....|+.|++.++.+.+...+..+|+||+|.++.+.+ ....+.-++..||+|.+|.+
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~l 98 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNL 98 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEee
Confidence 44455555544344445554555678888888888887777788889999999999855 33455556778899999999
Q ss_pred eccCCcc--ee-ecCCCCCCceEEEeec
Q 015001 194 RSCEGLE--SL-DLVNLSNLKEIILVNT 218 (414)
Q Consensus 194 ~~c~~~~--~l-~i~~l~~L~~L~l~~~ 218 (414)
++|..-. .+ .+..+++|..|++.+|
T Consensus 99 s~Nki~~lstl~pl~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 99 SGNKIKDLSTLRPLKELENLKSLDLFNC 126 (260)
T ss_pred cCCccccccccchhhhhcchhhhhcccC
Confidence 9885431 11 2334677888888888
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.00049 Score=60.31 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=22.7
Q ss_pred cccEEEeeccCCcceeecCCCCCCceEEEeec-----CCCceEeeeccceeeeEeeeec
Q 015001 187 LIEYLEIRSCEGLESLDLVNLSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY 240 (414)
Q Consensus 187 ~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~-----~~l~~~~~~~p~L~~L~l~~~~ 240 (414)
.|+.|++.++..........+|+|+.|.++.+ ..+..+...+|+|+++.++++.
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 34444444333222223333455555555544 1222222234555555555554
No 54
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.45 E-value=0.00043 Score=64.05 Aligned_cols=193 Identities=18% Similarity=0.123 Sum_probs=101.9
Q ss_pred CCeEEEEEecCCccccCCccc-cCCCcccEEEecCcccCC--CCccccCcccceeEeeE-EEcCh---HHH---------
Q 015001 115 EVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALRE-VCADD---QAI--------- 178 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~-~~~~~---~~l--------- 178 (414)
+..+++|+. .....+|+.. ...++|+.|+|+.+.+.. +..+.++++|.+|.+.+ +.+++ ..+
T Consensus 68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 556666654 4556788754 457999999999987753 36677888888888877 55532 111
Q ss_pred -----------HHHHhCCCcccEEEeeccCCc--ceeecCCCCCCceEEEeecC-----CCceEe-------e-----ec
Q 015001 179 -----------ASLISGCPLIEYLEIRSCEGL--ESLDLVNLSNLKEIILVNTS-----DIKRVE-------I-----KT 228 (414)
Q Consensus 179 -----------~~ll~~~p~Le~L~l~~c~~~--~~l~i~~l~~L~~L~l~~~~-----~l~~~~-------~-----~~ 228 (414)
+..+..+|+|..|.+.++..- ..-.+..+..++.+.+..++ +++... + .+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 222345567777776655221 11123334445554443321 000000 0 00
Q ss_pred --------------------cceeee--Eeeee--cccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001 229 --------------------SNVNAL--AIHQT--YLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (414)
Q Consensus 229 --------------------p~L~~L--~l~~~--~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (414)
-.++++ .+.+. ..... ...|..+++|++|+++++.++.-. ...+.....|+.|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcchhhhhhhh
Confidence 001111 01110 00000 123677899999999999876522 22244556677777
Q ss_pred cccc--cccc-cccccccccceEEeeccCC
Q 015001 284 MTKC--HKLT-SVRISSPCLKTLILECCDK 310 (414)
Q Consensus 284 l~~c--~~~~-~l~~~~~~L~~L~l~~c~~ 310 (414)
|... ..+. ........|+.|++.++..
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCee
Confidence 7663 1111 1223566777777777644
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.41 E-value=0.0064 Score=57.88 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=16.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcc
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCK 150 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~ 150 (414)
.+++.|+++.+ ....+|. + -.+|++|.+++|.
T Consensus 52 ~~l~~L~Is~c--~L~sLP~-L--P~sLtsL~Lsnc~ 83 (426)
T PRK15386 52 RASGRLYIKDC--DIESLPV-L--PNELTEITIENCN 83 (426)
T ss_pred cCCCEEEeCCC--CCcccCC-C--CCCCcEEEccCCC
Confidence 46666666654 2233331 1 1356666666653
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.11 E-value=0.015 Score=49.28 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=30.6
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcCh--HHHHHHHhCCCcccEEEeecc
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADD--QAIASLISGCPLIEYLEIRSC 196 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~l~~ll~~~p~Le~L~l~~c 196 (414)
.+...++|+++.+.....+..++.|.+|.|.+|.++. ..+. .-.|+|..|.+.+|
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNN 98 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchh---hhccccceEEecCc
Confidence 4455566666655444455566667777777666622 2222 23566666666655
No 57
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.06 E-value=0.0088 Score=32.81 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=22.2
Q ss_pred ccceeEeeEEEc-ChHHHHHHHhCCC
Q 015001 162 SLRKLALREVCA-DDQAIASLISGCP 186 (414)
Q Consensus 162 ~L~~L~L~~~~~-~~~~l~~ll~~~p 186 (414)
+||+|+|..+.+ ++..+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 5568999999998
No 58
>PLN03150 hypothetical protein; Provisional
Probab=95.89 E-value=0.0077 Score=61.74 Aligned_cols=101 Identities=12% Similarity=0.110 Sum_probs=69.1
Q ss_pred CCceEEEeecCCCc-eE---eeeccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001 209 NLKEIILVNTSDIK-RV---EIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (414)
Q Consensus 209 ~L~~L~l~~~~~l~-~~---~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (414)
.++.|++.++ .+. .+ ...+++|+.|+++++. ...++..++.+++|+.|++++|.+.+. ++..+..+++|+.|+
T Consensus 419 ~v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEE
Confidence 3677777776 222 11 1256889999998887 335566788899999999999888764 334467889999999
Q ss_pred ccccccccccccc----ccccceEEeeccCCc
Q 015001 284 MTKCHKLTSVRIS----SPCLKTLILECCDKL 311 (414)
Q Consensus 284 l~~c~~~~~l~~~----~~~L~~L~l~~c~~l 311 (414)
++++.....++.. ..++..+++.+|..+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccc
Confidence 9987554455432 234556777766543
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.86 E-value=0.004 Score=39.24 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=7.0
Q ss_pred HhCCCcccEEEeecc
Q 015001 182 ISGCPLIEYLEIRSC 196 (414)
Q Consensus 182 l~~~p~Le~L~l~~c 196 (414)
++.+|+|+.|++++|
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 344444444444444
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.82 E-value=0.0059 Score=38.44 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=16.8
Q ss_pred cCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+|++|+++++.+.+ ++..+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 45555555555543 3333455666666666654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.82 E-value=0.01 Score=50.28 Aligned_cols=64 Identities=20% Similarity=0.298 Sum_probs=49.0
Q ss_pred ccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCc
Q 015001 135 IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGL 199 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~ 199 (414)
+...+.|..|.++++.+... ....-+|+|++|.|.+|.+ .-+++.. +..||.|++|.+-+++..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchh
Confidence 34568999999999987533 3345678999999999988 4445555 578999999999888654
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.00075 Score=59.66 Aligned_cols=95 Identities=22% Similarity=0.222 Sum_probs=63.7
Q ss_pred CCCceEEEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecc
Q 015001 208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (414)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (414)
.+.++|+..+| ++..|.+ .+|.||.|.++-+.... ...+..|.+|++|.|..|.|.+-+-..-+.++|+|++|-|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45666667776 5555554 57788888887766222 33567788888888888887765545557888888888887
Q ss_pred c--cc-ccc-----cccccccccceEE
Q 015001 286 K--CH-KLT-----SVRISSPCLKTLI 304 (414)
Q Consensus 286 ~--c~-~~~-----~l~~~~~~L~~L~ 304 (414)
. |. ..+ .+...+|+|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 7 31 111 2334678888885
No 63
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.78 E-value=0.003 Score=57.14 Aligned_cols=36 Identities=36% Similarity=0.580 Sum_probs=34.6
Q ss_pred CccCCCCC----HHHHHHHhccCChHHHHHhhhcccCchh
Q 015001 9 VDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQ 44 (414)
Q Consensus 9 ~D~i~~LP----deiL~~Ils~L~~~d~~~~~~VskrW~~ 44 (414)
.|.++.|| |++...||+||+..+++.|.+|||+|+.
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r 111 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR 111 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence 68999999 9999999999999999999999999986
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.77 E-value=0.007 Score=53.52 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=73.3
Q ss_pred CChhhHHHHHHHHHh--CCCeEEEEEe--cCCccccCC-------ccccCCCcccEEEecCcccCCC------CccccCc
Q 015001 99 ENASLAGRCLGLAIE--SEVKELVLVH--WRSERRNLP-------EIIFYVESLHVLELSYCKLQQP------SENVKLF 161 (414)
Q Consensus 99 ~~~~~i~~~l~~~~~--~~l~~L~l~~--~~~~~~~lp-------~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~ 161 (414)
..+.....|+....+ ++++...++. .+....++| ..+..|+.|+..+|+.+.+... ....+-.
T Consensus 41 tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t 120 (388)
T COG5238 41 TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSST 120 (388)
T ss_pred cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCC
Confidence 445667788877654 4666666554 122222333 3455799999999999977543 2245567
Q ss_pred ccceeEeeEEEcChH-------HHH-----HHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeec
Q 015001 162 SLRKLALREVCADDQ-------AIA-----SLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNT 218 (414)
Q Consensus 162 ~L~~L~L~~~~~~~~-------~l~-----~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~ 218 (414)
.|++|.|++|..+.. ++. .-..+-|.||......|..... ..+.+..+|+.+.+..+
T Consensus 121 ~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN 195 (388)
T COG5238 121 DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN 195 (388)
T ss_pred CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence 899999999977321 111 1235678888887776644311 11222357777777766
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.72 E-value=0.00095 Score=59.04 Aligned_cols=96 Identities=23% Similarity=0.185 Sum_probs=68.5
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEe
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l 193 (414)
+++.|+.-.|+-..+ +....++.|+.|.|+-+.+.+...+..|.+|+.|.|..|.+ +-..+.. +.+.|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence 555555444332222 22345688999999999988878889999999999999988 3334443 689999999999
Q ss_pred eccCCcce-------eecCCCCCCceEE
Q 015001 194 RSCEGLES-------LDLVNLSNLKEII 214 (414)
Q Consensus 194 ~~c~~~~~-------l~i~~l~~L~~L~ 214 (414)
..|+.... ..+..+|+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 88765421 2345589999885
No 66
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.30 E-value=0.0032 Score=62.88 Aligned_cols=73 Identities=22% Similarity=0.187 Sum_probs=36.7
Q ss_pred CCCCcEEeccccccccc-ccccccccceEEeeccCC--ceEeeccCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001 276 LPLLEYLSMTKCHKLTS-VRISSPCLKTLILECCDK--LIQVEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (414)
Q Consensus 276 ~~~L~~L~l~~c~~~~~-l~~~~~~L~~L~l~~c~~--l~~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~ 348 (414)
+|.|+.|+|+....... ....+++|++|+|+.|.. +..+....-.|+.|.+.++.. ..+.|+.+|+.|+++.|
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHh
Confidence 44555555555211110 122455555555555432 111211112355566666554 66777788888888777
No 67
>PLN03150 hypothetical protein; Provisional
Probab=95.27 E-value=0.018 Score=59.06 Aligned_cols=100 Identities=14% Similarity=0.103 Sum_probs=70.3
Q ss_pred ceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEe
Q 015001 230 NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLIL 305 (414)
Q Consensus 230 ~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l 305 (414)
.++.|+++++. ...++..++.+++|+.|+++++.+.+. ++..+..+++|+.|+|+++.....++ ..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 36778887766 334556788899999999999887653 34447889999999999975544444 37789999999
Q ss_pred eccCCceEeeccC----CCeeeEEEeCce
Q 015001 306 ECCDKLIQVEIET----PNLSIFKYHGDL 330 (414)
Q Consensus 306 ~~c~~l~~~~~~~----p~L~~l~~~~~~ 330 (414)
++|.....++... .++..+.+.++.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9987655554322 234455565554
No 68
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.0066 Score=51.32 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=58.9
Q ss_pred cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee---
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD--- 203 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~--- 203 (414)
.+|.....-..++.++-+++.+... ....+++.++.|.+.+|.. .+..+..+-.-.|+|+.|+|++|+.++.-.
T Consensus 92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 4554333334567777777654332 3456778888888888876 777788777778888888888887765432
Q ss_pred cCCCCCCceEEEeec
Q 015001 204 LVNLSNLKEIILVNT 218 (414)
Q Consensus 204 i~~l~~L~~L~l~~~ 218 (414)
+..+++|+.|.+.+-
T Consensus 172 L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHhhhhHHHHhcCc
Confidence 233577777766654
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.62 E-value=0.0025 Score=61.88 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=87.7
Q ss_pred ccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce-eecC
Q 015001 127 ERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES-LDLV 205 (414)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~ 205 (414)
....+|..+.+...|+.|+|+.+.+...+...++=-|+.|-+.+++.+..... +...+.|..|+.+.|....- -.+.
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~--ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEE--IGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred cceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcc--cccchhHHHhhhhhhhhhhchHHhh
Confidence 44566777777777778888777665443333334477777777766221111 33556677777776644321 1344
Q ss_pred CCCCCceEEEeecCCCceEee--eccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001 206 NLSNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 206 ~l~~L~~L~l~~~~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (414)
.+.+|+.|.++.+ .+..++- ..-.|.+|+++.+....+++.|.++..|+.|.|.+|.+..
T Consensus 187 ~l~slr~l~vrRn-~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 187 YLTSLRDLNVRRN-HLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hHHHHHHHHHhhh-hhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 5677777777776 3333322 1334788888888777788889999999999998888664
No 70
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.92 E-value=0.0084 Score=58.39 Aligned_cols=80 Identities=21% Similarity=0.160 Sum_probs=42.4
Q ss_pred ccCCCcccEEEecCcccCCCCc-cccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCce
Q 015001 135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE 212 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~ 212 (414)
+..+++|+.|++.++.+..... ...+++|++|+++++.+ .... +..++.|+.|++.+|.....-.+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc----hhhccchhhheeccCcchhccCCccchhhhc
Confidence 3345666666666666654433 55566666666666665 2222 2334446666666664432222333455555
Q ss_pred EEEeec
Q 015001 213 IILVNT 218 (414)
Q Consensus 213 L~l~~~ 218 (414)
+++.++
T Consensus 167 l~l~~n 172 (414)
T KOG0531|consen 167 LDLSYN 172 (414)
T ss_pred ccCCcc
Confidence 555555
No 71
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.88 E-value=0.027 Score=50.76 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=32.1
Q ss_pred CCCccCCCCCHHHHHHHhcc-----CChHHHHHhhhcccCchh
Q 015001 7 LEVDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQ 44 (414)
Q Consensus 7 ~~~D~i~~LPdeiL~~Ils~-----L~~~d~~~~~~VskrW~~ 44 (414)
+..+.|..||||||..||.. ++.+++.++++|||.|+.
T Consensus 102 p~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~ 144 (366)
T KOG2997|consen 102 PELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK 144 (366)
T ss_pred hhhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence 33455789999999999975 567999999999999985
No 72
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.54 E-value=0.045 Score=51.52 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.7
Q ss_pred cCCCCCHHHHHHHhccCC-hHHHHHhhhcccCchhhccc
Q 015001 11 GISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT 48 (414)
Q Consensus 11 ~i~~LPdeiL~~Ils~L~-~~d~~~~~~VskrW~~lw~~ 48 (414)
+.++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 478999999999999996 67999999999999986544
No 73
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=92.75 E-value=0.0036 Score=60.80 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=98.2
Q ss_pred ccccCCccccCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCc-ceeec
Q 015001 127 ERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL-ESLDL 204 (414)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~-~~l~i 204 (414)
..-++|..+..|..|+.+.+..+.+. .+....++..|+.|+|+.++...-... +..|| |+.|.++++... ....+
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lp-Lkvli~sNNkl~~lp~~i 162 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLP-LKVLIVSNNKLTSLPEEI 162 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCc-ceeEEEecCccccCCccc
Confidence 44567776667777888877765443 335677888899999988876322111 33344 677777776543 12245
Q ss_pred CCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcE
Q 015001 205 VNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (414)
Q Consensus 205 ~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (414)
+..++|..|+.+.| .+..+. ....+|+.|.+..+....++-.+. .-.|..||+++|++.. ++.-+..+..|++
T Consensus 163 g~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 163 GLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQV 238 (722)
T ss_pred ccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhhee
Confidence 56688999998888 333333 245667777776666333444444 3357788888888764 3333566778888
Q ss_pred Eecccc
Q 015001 282 LSMTKC 287 (414)
Q Consensus 282 L~l~~c 287 (414)
|.|.+.
T Consensus 239 l~LenN 244 (722)
T KOG0532|consen 239 LQLENN 244 (722)
T ss_pred eeeccC
Confidence 888873
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.38 E-value=0.063 Score=52.31 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=40.6
Q ss_pred ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEc-ChHHHHHHHhCCCcccEEEeeccCCcceee--cCCCCCCc
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD--LVNLSNLK 211 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~--i~~l~~L~ 211 (414)
+..+++|++|+++++.+........++.|+.|++.+|.+ .... +..+++|+.+++++|.....-. ...+.+++
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~ 189 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDELSELISLE 189 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC----CccchhhhcccCCcchhhhhhhhhhhhccchH
Confidence 344566666666666655545555555566666666655 1111 1225555666665554332111 23345555
Q ss_pred eEEEeec
Q 015001 212 EIILVNT 218 (414)
Q Consensus 212 ~L~l~~~ 218 (414)
.+.+.++
T Consensus 190 ~l~l~~n 196 (414)
T KOG0531|consen 190 ELDLGGN 196 (414)
T ss_pred HHhccCC
Confidence 5555554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=0.11 Score=44.17 Aligned_cols=59 Identities=20% Similarity=0.191 Sum_probs=27.6
Q ss_pred cccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccccccccc----cccccceEEeec
Q 015001 249 SSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILEC 307 (414)
Q Consensus 249 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~ 307 (414)
.+++.++.|.+.+|. +.+..+..+-.-.|+|+.|+|++|..+++-.. .+++|+.|.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 334444445554443 23333444444455666666666544444322 344555554443
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=89.19 E-value=0.19 Score=50.30 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.8
Q ss_pred cCCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhh
Q 015001 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (414)
Q Consensus 6 ~~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l 45 (414)
....|.++.||-|+..+||+||+.++++++++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3457999999999999999999999999999999999864
No 77
>PF13013 F-box-like_2: F-box-like domain
Probab=83.51 E-value=0.6 Score=35.72 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHhccCChHHHHHhhhccc
Q 015001 11 GISTLPEPILHHILSFLPFKEVAQTCLLSK 40 (414)
Q Consensus 11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~Vsk 40 (414)
.+.+||+||+..||.+-+..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999999988887776
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.20 E-value=1.1 Score=23.69 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=13.2
Q ss_pred cccCceeEeeccCCchHHHHh
Q 015001 251 CGNLKCLKFDFLPIEDEWLCN 271 (414)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~ 271 (414)
+++|++|+|+++.++++....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 467888888888877766544
No 79
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=81.65 E-value=0.69 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHhhhhcceeeEEeeecccchhhhHHHHHHh
Q 015001 365 LAMFQKFSKVLNLQCREGELQMFGLAVRVFQ 395 (414)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~ 395 (414)
....++.+.+.++.|.+.|+++++|+++++.
T Consensus 12 l~s~Lk~v~~~~f~g~~~e~~f~~yil~na~ 42 (51)
T PF08387_consen 12 LLSHLKFVEIKGFRGEENELEFAKYILENAP 42 (51)
T ss_pred hhheeEEEEEEeeeCcHHHHHHHHHHHhhhh
Confidence 3456778889999999999999999999874
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.24 E-value=0.54 Score=37.05 Aligned_cols=57 Identities=11% Similarity=0.146 Sum_probs=20.1
Q ss_pred cCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEee
Q 015001 136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~ 194 (414)
..|++|+.+.+...-... ...+..+++|+.+++... +.. .-...+.+|+.|+.+.+.
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence 345566666665421111 133445555555555432 100 001123455555555553
No 81
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.99 E-value=1.1 Score=24.23 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=5.2
Q ss_pred CcccEEEeeccC
Q 015001 186 PLIEYLEIRSCE 197 (414)
Q Consensus 186 p~Le~L~l~~c~ 197 (414)
|+|++|+|.+|.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 444444444443
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.73 E-value=1.2 Score=35.03 Aligned_cols=12 Identities=17% Similarity=0.409 Sum_probs=4.3
Q ss_pred hCCCcccEEEee
Q 015001 183 SGCPLIEYLEIR 194 (414)
Q Consensus 183 ~~~p~Le~L~l~ 194 (414)
.+|++|+.+.+.
T Consensus 9 ~~~~~l~~i~~~ 20 (129)
T PF13306_consen 9 YNCSNLESITFP 20 (129)
T ss_dssp TT-TT--EEEET
T ss_pred hCCCCCCEEEEC
Confidence 345555555544
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=77.14 E-value=1.5 Score=21.18 Aligned_cols=10 Identities=40% Similarity=0.275 Sum_probs=4.5
Q ss_pred ccceEEeecc
Q 015001 299 CLKTLILECC 308 (414)
Q Consensus 299 ~L~~L~l~~c 308 (414)
+|+.|++++|
T Consensus 2 ~L~~L~l~~n 11 (17)
T PF13504_consen 2 NLRTLDLSNN 11 (17)
T ss_dssp T-SEEEETSS
T ss_pred ccCEEECCCC
Confidence 4455555554
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=76.73 E-value=0.59 Score=37.40 Aligned_cols=63 Identities=16% Similarity=0.079 Sum_probs=37.2
Q ss_pred ccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCc
Q 015001 135 IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL 199 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~ 199 (414)
+.....|+..+|+++.+... .-...+|.+++|+|.++.+.+-... +...|.|+.|+++.|+..
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 33445666667777766432 2234556777777777766432222 566777777777766543
No 85
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=74.27 E-value=2.5 Score=21.80 Aligned_cols=9 Identities=33% Similarity=0.147 Sum_probs=4.7
Q ss_pred cceEEeecc
Q 015001 300 LKTLILECC 308 (414)
Q Consensus 300 L~~L~l~~c 308 (414)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 455555555
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.13 E-value=3.1 Score=41.03 Aligned_cols=60 Identities=18% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCcccEEEecCcccCCC----CccccCcccceeEeeEE--Ec-ChHHHHHHHhCCCcccEEEeeccCCc
Q 015001 138 VESLHVLELSYCKLQQP----SENVKLFSLRKLALREV--CA-DDQAIASLISGCPLIEYLEIRSCEGL 199 (414)
Q Consensus 138 ~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~--~~-~~~~l~~ll~~~p~Le~L~l~~c~~~ 199 (414)
.+.+..++|+++++... ......|+|++|+|+++ .. ++..+.++ ...-||+|.+.+|+..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccc
Confidence 35566666776654322 23445677777777776 22 33334431 3455677777776654
No 87
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=64.00 E-value=5.3 Score=29.88 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.7
Q ss_pred ccCCCCCHHHHHHHhccCChHHHHH
Q 015001 10 DGISTLPEPILHHILSFLPFKEVAQ 34 (414)
Q Consensus 10 D~i~~LPdeiL~~Ils~L~~~d~~~ 34 (414)
..+..||.||-.+|+++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999999754
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.55 E-value=9.3 Score=21.07 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=15.3
Q ss_pred ccCceeEeeccCCchHHHHh
Q 015001 252 GNLKCLKFDFLPIEDEWLCN 271 (414)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~ 271 (414)
++|+.|+|++|.+.+.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 57888999988888765544
No 89
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=58.09 E-value=3.9 Score=28.56 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=18.8
Q ss_pred hhcceeeEEeeecccchhhhHHHHHH
Q 015001 369 QKFSKVLNLQCREGELQMFGLAVRVF 394 (414)
Q Consensus 369 ~~~~~~~~~~~~~~e~~~l~~~~~~~ 394 (414)
.+.+++.++.|...|+++++|+++++
T Consensus 7 Lk~v~i~~f~g~~~e~~~~~~il~~a 32 (72)
T smart00579 7 LEVLEIKGYRGTEEEKELVKYFLENA 32 (72)
T ss_pred EEEEEEEeccCcHHHHHHHHHHHhcc
Confidence 45566777777777777777777765
No 90
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=52.44 E-value=0.21 Score=49.26 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=80.1
Q ss_pred cccCCCcccEEEecCcccCCC------CccccC-cccceeEeeEEEcChH---HHHHHHhCCCcccEEEeeccCCcce--
Q 015001 134 IIFYVESLHVLELSYCKLQQP------SENVKL-FSLRKLALREVCADDQ---AIASLISGCPLIEYLEIRSCEGLES-- 201 (414)
Q Consensus 134 ~~~~~~~L~~L~L~~~~~~~~------~~~~~l-~~L~~L~L~~~~~~~~---~l~~ll~~~p~Le~L~l~~c~~~~~-- 201 (414)
.+....+|..|+++++.+... .....- ..|++|.+..|..+.. .+...+..++.++.+++..|.....
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 444567888888888877643 112222 4567777777777333 3334455577788888877765310
Q ss_pred e----ec----CCCCCCceEEEeecCCCceEe--------eeccc-eeeeEeeeecccce-----eeecccc-ccCceeE
Q 015001 202 L----DL----VNLSNLKEIILVNTSDIKRVE--------IKTSN-VNALAIHQTYLFPI-----EVNVSSC-GNLKCLK 258 (414)
Q Consensus 202 l----~i----~~l~~L~~L~l~~~~~l~~~~--------~~~p~-L~~L~l~~~~~~~~-----~~~~~~~-~~L~~L~ 258 (414)
. .+ ....+++.|.+.+| .+.... -..+. +..|++..+...+. ...+..+ +.+++++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 0 11 12356777777777 111100 01222 33355544441111 1122333 4566777
Q ss_pred eeccCCch---HHHHhhhccCCCCcEEeccc
Q 015001 259 FDFLPIED---EWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 259 l~~~~~~~---~~~~~~~~~~~~L~~L~l~~ 286 (414)
+..+.+.+ ..+.+.+..++.++.|.+..
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred hhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 76666654 23445555666677776666
No 91
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=51.09 E-value=21 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=22.5
Q ss_pred CeeeEEEeCcee---------EEeccCCccceEEEEeec
Q 015001 320 NLSIFKYHGDLI---------SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 320 ~L~~l~~~~~~~---------~~~~~~~~L~~L~l~~~~ 349 (414)
+|+.+.+.+..+ +++.|++.|+++.+....
T Consensus 6 ~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 6 SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred eEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 355555555443 889999999999998874
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=47.44 E-value=34 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.104 Sum_probs=21.2
Q ss_pred cCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCc
Q 015001 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL 199 (414)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~ 199 (414)
+|.+|+.-++.+..+....+...-.-|.++|--.|.+|..-
T Consensus 169 ~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfe 209 (302)
T KOG1665|consen 169 QCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFE 209 (302)
T ss_pred hhhhhcccccccchhhhhhhhhhhheecccccccccCcCCC
Confidence 34455555555554444444444444556665556655443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.92 E-value=9.6 Score=37.73 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=34.2
Q ss_pred CceEeeeccceeeeEeeeecc-cceeeecc--ccccCceeEeeccCCch------HHHHhhhccCCCCcEEe
Q 015001 221 IKRVEIKTSNVNALAIHQTYL-FPIEVNVS--SCGNLKCLKFDFLPIED------EWLCNGISKLPLLEYLS 283 (414)
Q Consensus 221 l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~--~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~ 283 (414)
+..+...+|+|+.|+++++.. ......+. +...|++|.+.||.+.. ..+..+-..||+|..|+
T Consensus 236 ~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 236 LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 333444677777777777620 00011122 23457777777777543 22334455788877765
No 94
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=43.43 E-value=2.1 Score=34.40 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=21.0
Q ss_pred eccceeeeEeeeecccceeeeccccccCceeEeeccCCc
Q 015001 227 KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (414)
Q Consensus 227 ~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (414)
..|-++.|++..+....++..+..+|.|+.|+++++.+.
T Consensus 75 kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 75 KFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc
Confidence 344455555555443334445566666666666666554
No 95
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.15 E-value=20 Score=32.06 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=39.0
Q ss_pred cccCCCccCCCCCHHHHHHHhccCC-hHHHHHhhhcccCc------hhhccccceeeee
Q 015001 4 IGVLEVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRW------KQVWQTFPDVEVG 55 (414)
Q Consensus 4 ~~~~~~D~i~~LPdeiL~~Ils~L~-~~d~~~~~~VskrW------~~lw~~~~~l~~~ 55 (414)
++++++=-+.+||.|++..|+.+++ -+|++.+++|-..- +.+|+.+..+.|.
T Consensus 194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566788999999999999998 57888887764333 3568887777776
No 96
>smart00029 GASTRIN gastrin / cholecystokinin / caerulein family. This family gathers small proteins of about 100 130 amino acids that act as hormones, among them gastrin, cholecystokinin and preprocaerulein which stimulate gastric, biliary, and pancreatic secretion and smooth muscle contraction.
Probab=39.36 E-value=5 Score=21.16 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHH
Q 015001 399 FWMACFGRHLMQ 410 (414)
Q Consensus 399 ~~~~~~~~~~~~ 410 (414)
+||. |||+-.+
T Consensus 1 GWMD-FGRRsaE 11 (26)
T smart00029 1 GWMD-FGRRSAE 11 (26)
T ss_pred Cccc-ccccccc
Confidence 4887 9998654
No 97
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=33.38 E-value=10 Score=34.99 Aligned_cols=39 Identities=31% Similarity=0.594 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccccc
Q 015001 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFP 50 (414)
Q Consensus 12 i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~~ 50 (414)
+..+|++++..|++++..+++++++.|++|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 457899999999999999999999999999987544443
No 98
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=31.93 E-value=31 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=7.8
Q ss_pred ccCceeEeeccCCc
Q 015001 252 GNLKCLKFDFLPIE 265 (414)
Q Consensus 252 ~~L~~L~l~~~~~~ 265 (414)
++|+.|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666655543
No 99
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=31.93 E-value=31 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=7.8
Q ss_pred ccCceeEeeccCCc
Q 015001 252 GNLKCLKFDFLPIE 265 (414)
Q Consensus 252 ~~L~~L~l~~~~~~ 265 (414)
++|+.|++.+|.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666655543
No 100
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=26.72 E-value=45 Score=18.13 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=8.8
Q ss_pred ccCceeEeeccCC
Q 015001 252 GNLKCLKFDFLPI 264 (414)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (414)
.+|+.|+++.+.|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4677777776665
No 101
>PF01827 FTH: FTH domain; InterPro: IPR002900 This domain has no known function, it is presumed to be a protein-protein interaction module. It is found in many proteins from Caenorhabditis elegans and Caenorhabditis briggsae. The domain is found associated with, and C-terminal to, the cyclin-like F-box IPR001810 from INTERPRO.
Probab=24.98 E-value=3.4e+02 Score=21.22 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhccccCCCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCc--cccCCCcccE
Q 015001 66 EILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPE--IIFYVESLHV 143 (414)
Q Consensus 66 ~f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~ 143 (414)
+|.+.+...+ .. .....++++.+... ....+...+...-...|+++.+ ........+.. ..-.+++++.
T Consensus 2 ~~~~~l~~~l-~s-~~~l~vk~l~i~~~------~~~~~~~iL~~l~p~~L~~i~i-~~~~~~~~~~~i~~~eqWk~~k~ 72 (142)
T PF01827_consen 2 KFFEKLQEIL-KS-KHKLKVKKLKINSL------NQSEVLSILPFLDPGVLEEIRI-NDEEEEEDFDEIVELEQWKNAKE 72 (142)
T ss_pred hHHHHHHHHH-cC-CCCeeEEEEEEEcC------CHHHHHHHHhcCCCCcCEEEEC-cCcccccchhheeehHHhceehe
Confidence 4566677777 33 55667777776642 3456777777666668999999 21112222222 2334688888
Q ss_pred EEecCcccCCCCccccCcccceeEeeEEEcChHHHH---HHHhCCCcccEEEe
Q 015001 144 LELSYCKLQQPSENVKLFSLRKLALREVCADDQAIA---SLISGCPLIEYLEI 193 (414)
Q Consensus 144 L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~---~ll~~~p~Le~L~l 193 (414)
+.+.+..... .....+.+++...+.--.++.+.+. ..+...|+.+.-.+
T Consensus 73 ~~i~~~~~~~-~~l~~f~h~~~~~i~~~~~t~~di~~l~~~l~~~~~~~~~~i 124 (142)
T PF01827_consen 73 FKIGGFVIDS-FPLENFSHFEKFNIHFESITVEDIWKLKENLLKSPNFKYFRI 124 (142)
T ss_pred eEeccccccc-HHHHhCCCccEEEEEEEeCCHHHHHHHHHHHcCCCCceEEEE
Confidence 8888765432 1355566666666654455554443 33445555555555
No 102
>PF11880 DUF3400: Domain of unknown function (DUF3400); InterPro: IPR021817 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 50 amino acids in length. This domain is found associated with PF02754 from PFAM, PF02913 from PFAM, PF01565 from PFAM.
Probab=23.76 E-value=56 Score=20.38 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=10.3
Q ss_pred hhHHHHHHHhHHH
Q 015001 396 SQMFWMACFGRHL 408 (414)
Q Consensus 396 ~~~~~~~~~~~~~ 408 (414)
.+++||.+|+++.
T Consensus 23 LGe~W~~~~v~~a 35 (45)
T PF11880_consen 23 LGENWQQDYVERA 35 (45)
T ss_pred hhhhHHHHHHHHH
Confidence 3678999999874
Done!