Query 015001
Match_columns 414
No_of_seqs 258 out of 2711
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 04:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ogk_B Coronatine-insensitive 99.9 2E-23 6.9E-28 211.1 12.1 182 7-197 4-231 (592)
2 2ast_B S-phase kinase-associat 99.9 1.1E-23 3.7E-28 197.8 8.2 235 8-287 5-257 (336)
3 2p1m_B Transport inhibitor res 99.9 2.2E-23 7.4E-28 210.9 9.7 37 9-45 3-40 (594)
4 4fcg_A Uncharacterized protein 99.7 6.9E-17 2.4E-21 150.8 10.7 203 106-314 73-293 (328)
5 4fcg_A Uncharacterized protein 99.6 2.3E-15 7.8E-20 140.5 10.6 206 138-348 80-311 (328)
6 4fmz_A Internalin; leucine ric 99.6 6.7E-15 2.3E-19 138.4 11.7 224 114-348 66-297 (347)
7 3rgz_A Protein brassinosteroid 99.5 3.3E-15 1.1E-19 155.3 7.3 229 115-348 101-353 (768)
8 4fmz_A Internalin; leucine ric 99.5 2.2E-14 7.5E-19 134.9 11.5 227 113-349 43-276 (347)
9 1ogq_A PGIP-2, polygalacturona 99.5 7.1E-15 2.4E-19 136.3 5.8 230 115-348 51-301 (313)
10 3t6q_A CD180 antigen; protein- 99.5 3E-14 1E-18 144.2 8.4 216 130-348 292-533 (606)
11 1o6v_A Internalin A; bacterial 99.5 1.5E-13 5.2E-18 134.6 12.5 204 137-348 175-385 (466)
12 3o6n_A APL1; leucine-rich repe 99.5 6.3E-14 2.1E-18 134.0 9.6 229 114-349 69-350 (390)
13 1o6v_A Internalin A; bacterial 99.5 3.1E-13 1.1E-17 132.3 14.5 226 113-348 89-341 (466)
14 3rgz_A Protein brassinosteroid 99.5 5.3E-14 1.8E-18 146.2 9.5 174 136-310 197-380 (768)
15 3vq2_A TLR4, TOLL-like recepto 99.5 6.5E-14 2.2E-18 141.7 9.5 148 135-287 281-434 (606)
16 3v47_A TOLL-like receptor 5B a 99.5 7.7E-14 2.6E-18 136.1 9.0 119 230-349 276-406 (455)
17 3oja_B Anopheles plasmodium-re 99.5 6.4E-14 2.2E-18 141.5 8.3 102 247-350 249-357 (597)
18 3bz5_A Internalin-J, INLJ; leu 99.5 2.3E-13 7.8E-18 132.7 11.8 218 114-348 64-296 (457)
19 3t6q_A CD180 antigen; protein- 99.5 1E-13 3.4E-18 140.4 9.3 232 115-350 255-512 (606)
20 3g06_A SSPH2 (leucine-rich rep 99.5 3.1E-13 1.1E-17 136.0 12.7 225 114-358 61-304 (622)
21 3bz5_A Internalin-J, INLJ; leu 99.5 1.9E-13 6.6E-18 133.2 10.8 240 83-348 64-328 (457)
22 2id5_A Lingo-1, leucine rich r 99.4 1.1E-13 3.6E-18 136.0 8.6 230 114-348 56-306 (477)
23 2id5_A Lingo-1, leucine rich r 99.4 3.2E-13 1.1E-17 132.6 12.0 231 114-349 80-331 (477)
24 3vq2_A TLR4, TOLL-like recepto 99.4 6.1E-14 2.1E-18 141.9 7.0 227 114-348 285-555 (606)
25 1ogq_A PGIP-2, polygalacturona 99.4 4.9E-14 1.7E-18 130.6 5.0 214 113-330 75-302 (313)
26 2z80_A TOLL-like receptor 2, v 99.4 5E-13 1.7E-17 125.9 11.9 233 114-350 52-313 (353)
27 2z66_A Variable lymphocyte rec 99.4 9.6E-14 3.3E-18 128.1 6.8 219 128-349 19-259 (306)
28 3v47_A TOLL-like receptor 5B a 99.4 1.9E-13 6.5E-18 133.3 8.8 233 114-348 54-381 (455)
29 2ast_B S-phase kinase-associat 99.4 5.2E-15 1.8E-19 138.5 -2.4 194 114-310 93-305 (336)
30 3oja_A Leucine-rich immune mol 99.4 2E-13 7E-18 134.2 7.9 187 134-350 53-249 (487)
31 1xku_A Decorin; proteoglycan, 99.4 4E-13 1.4E-17 125.3 9.5 189 114-309 76-274 (330)
32 3o53_A Protein LRIM1, AGAP0063 99.4 1.2E-13 4.1E-18 128.2 5.6 219 102-350 20-249 (317)
33 4eco_A Uncharacterized protein 99.4 4.6E-13 1.6E-17 136.1 10.0 171 113-287 205-412 (636)
34 1h6u_A Internalin H; cell adhe 99.4 7.5E-13 2.6E-17 122.3 10.4 187 113-310 40-229 (308)
35 2z7x_B TOLL-like receptor 1, v 99.4 7.8E-13 2.7E-17 131.3 11.2 122 227-348 322-454 (520)
36 2z63_A TOLL-like receptor 4, v 99.4 6.7E-13 2.3E-17 133.2 10.7 212 130-348 296-528 (570)
37 3ogk_B Coronatine-insensitive 99.4 1.6E-13 5.4E-18 138.4 5.8 192 157-348 289-523 (592)
38 2z63_A TOLL-like receptor 4, v 99.4 4.7E-13 1.6E-17 134.3 8.7 228 115-348 258-504 (570)
39 3zyi_A Leucine-rich repeat-con 99.4 7.6E-13 2.6E-17 129.0 9.8 206 139-349 75-301 (452)
40 3zyj_A Leucine-rich repeat-con 99.4 6.9E-13 2.3E-17 128.9 9.4 206 139-349 64-290 (440)
41 1h6u_A Internalin H; cell adhe 99.4 1.1E-12 3.6E-17 121.3 10.1 186 137-331 39-229 (308)
42 3o6n_A APL1; leucine-rich repe 99.4 9.2E-13 3.1E-17 125.9 9.4 230 113-349 44-306 (390)
43 3zyi_A Leucine-rich repeat-con 99.4 6.8E-13 2.3E-17 129.4 8.7 211 114-331 75-302 (452)
44 4eco_A Uncharacterized protein 99.4 6.2E-14 2.1E-18 142.6 0.7 213 130-348 197-467 (636)
45 2p1m_B Transport inhibitor res 99.4 2.2E-13 7.6E-18 137.4 4.1 237 113-350 210-518 (594)
46 3zyj_A Leucine-rich repeat-con 99.4 8.8E-13 3E-17 128.1 8.0 212 114-331 64-291 (440)
47 1z7x_W Ribonuclease inhibitor; 99.4 1.1E-13 3.7E-18 135.2 1.4 266 111-381 25-352 (461)
48 1z7x_W Ribonuclease inhibitor; 99.3 2E-13 7E-18 133.3 2.9 217 132-349 106-381 (461)
49 3j0a_A TOLL-like receptor 5; m 99.3 2.6E-12 8.8E-17 134.9 11.2 96 252-348 266-372 (844)
50 4ecn_A Leucine-rich repeat pro 99.3 6.5E-13 2.2E-17 138.3 6.4 81 114-198 548-631 (876)
51 3oja_B Anopheles plasmodium-re 99.3 2E-12 6.9E-17 130.5 9.5 102 227-331 252-357 (597)
52 4ecn_A Leucine-rich repeat pro 99.3 2E-12 6.7E-17 134.7 9.3 151 113-265 447-632 (876)
53 1ozn_A Reticulon 4 receptor; N 99.3 2.4E-12 8.2E-17 117.5 8.1 201 128-349 23-236 (285)
54 2ca6_A RAN GTPase-activating p 99.3 2.6E-13 8.9E-18 129.5 1.7 195 114-309 32-285 (386)
55 1jl5_A Outer protein YOPM; leu 99.3 1.4E-11 4.6E-16 120.0 13.8 137 139-287 131-267 (454)
56 3oja_A Leucine-rich immune mol 99.3 2.7E-12 9.2E-17 126.2 8.1 208 82-311 33-250 (487)
57 2ft3_A Biglycan; proteoglycan, 99.3 1.5E-12 5.2E-17 121.6 5.7 225 114-347 78-329 (332)
58 1h6t_A Internalin B; cell adhe 99.3 3.7E-12 1.3E-16 116.6 7.9 163 114-287 46-210 (291)
59 1ozn_A Reticulon 4 receptor; N 99.3 2E-12 6.9E-17 117.9 6.1 192 114-310 32-237 (285)
60 2z81_A CD282 antigen, TOLL-lik 99.3 3.1E-12 1.1E-16 127.7 7.9 61 248-309 357-421 (549)
61 3o53_A Protein LRIM1, AGAP0063 99.3 4.2E-12 1.4E-16 117.8 8.1 182 114-310 58-249 (317)
62 1xku_A Decorin; proteoglycan, 99.3 8.5E-12 2.9E-16 116.3 9.9 207 114-331 52-275 (330)
63 2z7x_B TOLL-like receptor 1, v 99.3 3.7E-12 1.3E-16 126.4 7.5 171 114-288 45-258 (520)
64 2z66_A Variable lymphocyte rec 99.3 7.3E-13 2.5E-17 122.2 2.2 212 114-331 28-260 (306)
65 1wwl_A Monocyte differentiatio 99.3 1.5E-12 5.2E-17 120.4 4.4 195 137-348 93-306 (312)
66 4glp_A Monocyte differentiatio 99.3 3.8E-12 1.3E-16 117.6 6.6 201 101-308 78-304 (310)
67 2z81_A CD282 antigen, TOLL-lik 99.3 5E-11 1.7E-15 119.0 14.9 193 114-309 26-234 (549)
68 3rfs_A Internalin B, repeat mo 99.3 1.4E-12 4.7E-17 118.3 3.2 192 113-314 40-238 (272)
69 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 1.1E-11 3.9E-16 124.1 10.1 122 227-348 351-483 (562)
70 3j0a_A TOLL-like receptor 5; m 99.3 6.2E-12 2.1E-16 132.0 8.3 231 114-348 266-536 (844)
71 2z80_A TOLL-like receptor 2, v 99.3 7.5E-12 2.6E-16 117.9 7.7 212 114-329 76-311 (353)
72 4ezg_A Putative uncharacterize 99.2 7.9E-12 2.7E-16 107.5 6.6 145 114-286 44-190 (197)
73 1m9s_A Internalin B; cell inva 99.2 9.4E-12 3.2E-16 125.1 7.5 166 112-288 41-208 (605)
74 1ziw_A TOLL-like receptor 3; i 99.2 2.7E-11 9.3E-16 124.2 10.6 230 114-348 25-306 (680)
75 3goz_A Leucine-rich repeat-con 99.2 6.5E-12 2.2E-16 118.7 5.3 96 253-348 168-294 (362)
76 3rfs_A Internalin B, repeat mo 99.2 1.5E-11 5E-16 111.5 7.2 171 135-310 37-217 (272)
77 2xwt_C Thyrotropin receptor; s 99.2 2.1E-11 7.1E-16 108.2 7.9 166 139-308 31-215 (239)
78 2xwt_C Thyrotropin receptor; s 99.2 2.7E-11 9.2E-16 107.5 8.4 191 114-309 31-237 (239)
79 2o6q_A Variable lymphocyte rec 99.2 3.1E-11 1E-15 109.2 8.8 79 139-218 37-119 (270)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 3.9E-11 1.3E-15 120.2 10.5 99 249-348 350-460 (562)
81 4glp_A Monocyte differentiatio 99.2 3.9E-12 1.3E-16 117.6 2.8 105 114-218 64-179 (310)
82 2ca6_A RAN GTPase-activating p 99.2 5.6E-12 1.9E-16 120.2 3.8 197 113-310 59-315 (386)
83 1ziw_A TOLL-like receptor 3; i 99.2 2.1E-11 7.2E-16 125.0 7.8 52 296-348 478-546 (680)
84 1h6t_A Internalin B; cell adhe 99.2 4.7E-11 1.6E-15 109.2 8.9 166 136-310 43-212 (291)
85 1wwl_A Monocyte differentiatio 99.2 1.3E-11 4.4E-16 114.2 5.2 194 108-309 89-307 (312)
86 1m9s_A Internalin B; cell inva 99.2 3E-11 1E-15 121.4 7.6 163 138-309 42-208 (605)
87 2z62_A TOLL-like receptor 4, v 99.2 2.4E-11 8.1E-16 110.2 6.1 201 128-349 19-235 (276)
88 1jl5_A Outer protein YOPM; leu 99.2 1.7E-10 5.8E-15 112.3 12.4 76 114-197 131-206 (454)
89 2ft3_A Biglycan; proteoglycan, 99.2 2.2E-11 7.7E-16 113.5 5.6 225 114-349 54-305 (332)
90 4ezg_A Putative uncharacterize 99.1 3.6E-11 1.2E-15 103.3 6.4 147 136-309 41-192 (197)
91 1p9a_G Platelet glycoprotein I 99.1 7.8E-11 2.7E-15 107.7 7.9 170 135-309 6-183 (290)
92 2z62_A TOLL-like receptor 4, v 99.1 9.2E-11 3.1E-15 106.3 6.5 126 161-288 28-160 (276)
93 3g06_A SSPH2 (leucine-rich rep 99.1 4.1E-10 1.4E-14 113.4 11.4 212 113-348 39-251 (622)
94 2o6q_A Variable lymphocyte rec 99.1 1.5E-10 5.2E-15 104.6 7.3 168 114-286 37-214 (270)
95 1xeu_A Internalin C; cellular 99.1 1.6E-10 5.4E-15 104.0 6.3 144 135-287 37-182 (263)
96 1p9a_G Platelet glycoprotein I 99.0 2.3E-10 8E-15 104.5 6.7 185 115-309 11-206 (290)
97 3cvr_A Invasion plasmid antige 99.0 6.3E-10 2.1E-14 110.7 8.7 178 112-312 57-244 (571)
98 1xeu_A Internalin C; cellular 99.0 1.4E-10 4.8E-15 104.4 3.4 165 138-310 18-184 (263)
99 4ay9_X Follicle-stimulating ho 99.0 9.4E-10 3.2E-14 103.3 9.0 40 274-314 199-239 (350)
100 3goz_A Leucine-rich repeat-con 99.0 1.6E-10 5.3E-15 109.2 3.3 174 135-309 46-264 (362)
101 3m19_A Variable lymphocyte rec 99.0 5.7E-10 1.9E-14 99.6 6.8 154 128-286 26-188 (251)
102 3m19_A Variable lymphocyte rec 98.9 1.1E-09 3.7E-14 97.8 6.4 145 139-287 14-165 (251)
103 2ell_A Acidic leucine-rich nuc 98.9 4.4E-10 1.5E-14 93.8 3.2 127 139-287 24-157 (168)
104 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 4.8E-10 1.6E-14 73.9 2.7 39 8-46 5-43 (53)
105 4ay9_X Follicle-stimulating ho 98.9 5.9E-09 2E-13 97.8 9.5 214 129-348 22-256 (350)
106 2je0_A Acidic leucine-rich nuc 98.9 2.5E-10 8.7E-15 93.2 0.1 35 139-173 17-54 (149)
107 2o6s_A Variable lymphocyte rec 98.8 2.1E-09 7E-14 93.0 5.2 147 129-287 20-175 (208)
108 2ell_A Acidic leucine-rich nuc 98.8 3E-09 1E-13 88.6 4.8 104 114-218 24-130 (168)
109 3cvr_A Invasion plasmid antige 98.8 1.8E-08 6.1E-13 100.3 10.7 177 139-350 59-242 (571)
110 2o6s_A Variable lymphocyte rec 98.7 2.8E-09 9.7E-14 92.1 2.8 165 142-314 10-181 (208)
111 4g8a_A TOLL-like receptor 4; l 98.7 6.9E-09 2.4E-13 105.0 5.9 204 158-361 368-591 (635)
112 2je0_A Acidic leucine-rich nuc 98.7 3.1E-09 1.1E-13 86.7 2.3 104 114-218 17-123 (149)
113 2ra8_A Uncharacterized protein 98.7 1.5E-08 5.1E-13 95.1 5.5 130 177-309 163-318 (362)
114 3e6j_A Variable lymphocyte rec 98.7 2.7E-08 9.1E-13 87.4 6.2 132 128-263 31-170 (229)
115 1a9n_A U2A', U2A'; complex (nu 98.6 7.7E-09 2.6E-13 86.9 2.5 127 135-287 15-150 (176)
116 1a9n_A U2A', U2A'; complex (nu 98.6 1.4E-08 4.9E-13 85.2 4.1 102 208-310 42-152 (176)
117 2v9t_B SLIT homolog 2 protein 98.6 3.3E-08 1.1E-12 86.3 6.0 134 127-264 22-164 (220)
118 1ds9_A Outer arm dynein; leuci 98.6 4.2E-09 1.4E-13 90.3 0.2 146 115-283 24-180 (198)
119 3e4g_A ATP synthase subunit S, 98.6 4.3E-08 1.5E-12 81.3 6.0 96 128-223 50-154 (176)
120 2ra8_A Uncharacterized protein 98.6 2.7E-07 9.1E-12 86.6 11.1 197 68-287 94-317 (362)
121 2xot_A Amphoterin-induced prot 98.6 5.1E-08 1.7E-12 91.8 5.6 144 139-286 39-198 (361)
122 2v70_A SLIT-2, SLIT homolog 2 98.6 5.5E-08 1.9E-12 84.8 5.3 132 129-264 24-165 (220)
123 3e6j_A Variable lymphocyte rec 98.5 6E-08 2.1E-12 85.1 5.5 141 141-286 21-168 (229)
124 1ds9_A Outer arm dynein; leuci 98.5 9.9E-09 3.4E-13 88.0 -0.4 97 207-304 69-180 (198)
125 2v70_A SLIT-2, SLIT homolog 2 98.5 4.5E-08 1.5E-12 85.4 3.5 142 142-286 14-162 (220)
126 4g8a_A TOLL-like receptor 4; l 98.5 3.7E-07 1.3E-11 92.2 10.2 101 248-349 441-553 (635)
127 1dce_A Protein (RAB geranylger 98.5 3E-09 1E-13 106.2 -5.6 171 136-310 346-545 (567)
128 2v9t_B SLIT homolog 2 protein 98.5 1.1E-07 3.7E-12 82.9 4.7 141 142-286 14-161 (220)
129 3un9_A NLR family member X1; l 98.4 9.1E-09 3.1E-13 97.2 -2.6 35 162-196 102-136 (372)
130 2xot_A Amphoterin-induced prot 98.4 2.8E-07 9.7E-12 86.7 5.4 162 142-309 21-200 (361)
131 3sb4_A Hypothetical leucine ri 98.3 4.6E-07 1.6E-11 84.1 4.7 10 114-123 49-58 (329)
132 3un9_A NLR family member X1; l 98.3 3.4E-08 1.2E-12 93.3 -3.6 162 110-287 68-249 (372)
133 1w8a_A SLIT protein; signaling 98.2 1.1E-06 3.7E-11 74.8 5.1 113 129-265 21-139 (192)
134 3e4g_A ATP synthase subunit S, 98.2 1.2E-06 4.1E-11 72.6 5.0 83 230-312 62-153 (176)
135 1dce_A Protein (RAB geranylger 98.2 9.9E-07 3.4E-11 87.9 4.4 118 162-284 442-567 (567)
136 4b8c_D Glucose-repressible alc 98.1 1.3E-07 4.5E-12 97.2 -2.5 59 207-266 269-330 (727)
137 1w8a_A SLIT protein; signaling 98.1 3.2E-06 1.1E-10 71.8 5.9 102 114-218 29-136 (192)
138 2wfh_A SLIT homolog 2 protein 98.1 4E-06 1.4E-10 71.3 5.3 36 229-264 102-138 (193)
139 2e31_A FBS1, F-box only protei 98.0 1.5E-06 5.1E-11 77.9 2.8 38 9-46 48-86 (297)
140 2wfh_A SLIT homolog 2 protein 98.0 6E-06 2E-10 70.2 5.7 109 128-240 22-137 (193)
141 2o6r_A Variable lymphocyte rec 98.0 6.1E-06 2.1E-10 68.9 5.7 106 139-266 28-138 (177)
142 2o6r_A Variable lymphocyte rec 98.0 3.9E-06 1.3E-10 70.1 4.4 123 141-287 9-134 (177)
143 3l2o_B F-box only protein 4; s 98.0 8E-07 2.7E-11 78.8 0.1 34 11-44 4-37 (312)
144 4b8c_D Glucose-repressible alc 98.0 1.6E-06 5.4E-11 89.2 2.2 106 180-289 218-328 (727)
145 3sb4_A Hypothetical leucine ri 97.9 2.2E-05 7.7E-10 72.6 8.2 93 207-304 225-327 (329)
146 4fdw_A Leucine rich hypothetic 97.8 3.9E-05 1.3E-09 73.0 8.3 195 139-347 157-379 (401)
147 3v7d_B Cell division control p 97.8 3.4E-06 1.2E-10 81.6 0.1 42 7-48 10-51 (464)
148 2ovr_B FBW7, F-BOX/WD repeat p 97.6 2.9E-05 9.9E-10 74.7 3.5 40 6-45 13-52 (445)
149 3g39_A Variable lymphocyte rec 97.6 6E-05 2.1E-09 62.4 4.9 88 128-218 21-112 (170)
150 2r9u_A Variable lymphocyte rec 97.5 8.7E-05 3E-09 61.7 5.1 87 129-218 25-115 (174)
151 1io0_A Tropomodulin; LRR prote 97.5 4E-05 1.4E-09 64.5 2.9 40 248-287 117-161 (185)
152 1p22_A F-BOX/WD-repeat protein 97.5 1.5E-05 5E-10 76.6 0.2 38 7-44 6-47 (435)
153 3g39_A Variable lymphocyte rec 97.2 0.00029 9.9E-09 58.2 4.3 16 249-264 51-66 (170)
154 1io0_A Tropomodulin; LRR prote 97.0 6.2E-05 2.1E-09 63.3 -1.3 62 137-198 34-105 (185)
155 4fdw_A Leucine rich hypothetic 97.0 0.0009 3.1E-08 63.5 6.0 178 115-309 158-356 (401)
156 2r9u_A Variable lymphocyte rec 96.9 0.0009 3.1E-08 55.5 5.2 55 141-197 14-68 (174)
157 4fs7_A Uncharacterized protein 96.8 0.0016 5.4E-08 61.6 6.4 130 208-347 230-375 (394)
158 2ifg_A High affinity nerve gro 96.6 0.0011 3.9E-08 61.3 4.0 89 127-218 20-113 (347)
159 2ifg_A High affinity nerve gro 96.1 0.0089 3.1E-07 55.2 6.7 75 143-218 12-90 (347)
160 3rw6_A Nuclear RNA export fact 96.0 0.0023 7.8E-08 56.8 1.8 39 135-173 192-232 (267)
161 3rw6_A Nuclear RNA export fact 95.9 0.0035 1.2E-07 55.6 2.7 32 253-284 221-258 (267)
162 4fs7_A Uncharacterized protein 93.4 0.12 4.3E-06 48.4 6.7 139 136-286 227-375 (394)
163 1pgv_A TMD-1, tropomodulin TMD 91.8 0.21 7.3E-06 41.8 5.1 21 176-196 31-51 (197)
164 4gt6_A Cell surface protein; l 90.4 0.092 3.2E-06 49.3 1.8 121 155-286 259-387 (394)
165 4gt6_A Cell surface protein; l 89.8 0.28 9.4E-06 46.0 4.5 76 228-307 287-366 (394)
166 1pgv_A TMD-1, tropomodulin TMD 87.3 0.078 2.7E-06 44.4 -1.0 97 100-196 25-136 (197)
167 4h09_A Hypothetical leucine ri 84.2 1.1 3.7E-05 41.5 5.1 138 137-286 192-342 (379)
168 4h09_A Hypothetical leucine ri 79.3 2.4 8.3E-05 39.1 5.6 37 248-285 282-318 (379)
169 3rfe_A Platelet glycoprotein I 67.2 2.2 7.7E-05 32.7 1.7 42 130-173 24-67 (130)
170 3rfe_A Platelet glycoprotein I 51.1 5.7 0.00019 30.4 1.5 55 143-198 12-67 (130)
No 1
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2e-23 Score=211.05 Aligned_cols=182 Identities=11% Similarity=0.156 Sum_probs=93.7
Q ss_pred CCCccCC----CCCHHHHHHHhccC-ChHHHHHhhhcccCchhhccccce-eeeeccccCCC------------------
Q 015001 7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPR------------------ 62 (414)
Q Consensus 7 ~~~D~i~----~LPdeiL~~Ils~L-~~~d~~~~~~VskrW~~lw~~~~~-l~~~~~~~~~~------------------ 62 (414)
++.|+++ +||||++.+||+|| +.+|++++++|||||++++...+. +.+...+....
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 83 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGK 83 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECS
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCC
Confidence 3456666 89999999999999 899999999999999987533222 22211111000
Q ss_pred -c----------hhh-HHHHHHHHHhccccCCCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecC-Cccc
Q 015001 63 -K----------SKE-ILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERR 129 (414)
Q Consensus 63 -~----------~~~-f~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~-~~~~ 129 (414)
. ... ....+..+. .....++.+.++.. ...+..-.|+......++++|++..+. ....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 84 PRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred cchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 0 000 000111111 01234444444422 112222333333333346666665532 1112
Q ss_pred cCCccccCCCcccEEEecCcccCCC------CccccCcccceeEeeEEEcC---hHHHHHHHhCCCcccEEEeeccC
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCE 197 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~~p~Le~L~l~~c~ 197 (414)
.++.....|++|++|++++|.+... .....+++|++|+++++.++ ...+..++.+||+|++|++.+|.
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 2333334567777777777755322 12345677777777666653 45666667777777777777764
No 2
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=1.1e-23 Score=197.81 Aligned_cols=235 Identities=18% Similarity=0.206 Sum_probs=126.9
Q ss_pred CCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccccceeeeeccccCCCchhhHHHHHHHHHhccccCCCCeee
Q 015001 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (414)
Q Consensus 8 ~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~~~~l~~~~~~~~~~~~~~f~~~v~~~l~~~~~~~~~l~~ 87 (414)
+...+++||||++.+||+||+.+|+++++.|||+|+++... |. .++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~ 51 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT 51 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence 45668999999999999999999999999999999997432 11 1111
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC---CCccccCcccc
Q 015001 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ---PSENVKLFSLR 164 (414)
Q Consensus 88 l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~ 164 (414)
+.+. ... .. +..+.....++++.+++... .....+..++.+++|++|++++|.+.. +.....+++|+
T Consensus 52 l~l~--~~~--~~----~~~~~~~~~~~l~~L~l~~n--~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 52 LDLT--GKN--LH----PDVTGRLLSQGVIAFRCPRS--FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp EECT--TCB--CC----HHHHHHHHHTTCSEEECTTC--EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred eccc--ccc--CC----HHHHHhhhhccceEEEcCCc--cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 1111 000 00 12233333456777766542 122233335566777777777776532 13455677777
Q ss_pred eeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce--e--ecCCCCCCceEEEeecCCCceE-----eeecc-ceeee
Q 015001 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--L--DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVNAL 234 (414)
Q Consensus 165 ~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l--~i~~l~~L~~L~l~~~~~l~~~-----~~~~p-~L~~L 234 (414)
+|++++|.+++..... ++.+++|++|++++|..+.. + .+..+++|+.|++++|..+... ...+| +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 7777777665544443 45577777777777743321 1 1233566666666666333221 11344 55555
Q ss_pred Eeeeecc----cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccc
Q 015001 235 AIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 235 ~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+++++.. ..++..+..+++|++|+++++. +++..+. .+..+++|+.|++++|
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence 5555420 1112223344555555555444 3332222 2344455555555554
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=2.2e-23 Score=210.85 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=29.3
Q ss_pred CccCCCCCHHHHHHHhccCC-hHHHHHhhhcccCchhh
Q 015001 9 VDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQV 45 (414)
Q Consensus 9 ~D~i~~LPdeiL~~Ils~L~-~~d~~~~~~VskrW~~l 45 (414)
.|+++.||||++.+||+||+ .+|++++++|||||+++
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 58999999999999999999 99999999999999987
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=6.9e-17 Score=150.85 Aligned_cols=203 Identities=20% Similarity=0.231 Sum_probs=135.8
Q ss_pred HHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEcChHHHHHHHhC
Q 015001 106 RCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISG 184 (414)
Q Consensus 106 ~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~ 184 (414)
..+..+...++++|++.... ...+|..++.+++|++|++++|.+.. +..+..+++|++|+|++|.+. .+...+..
T Consensus 73 ~~l~~~~~~~l~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~ 148 (328)
T 4fcg_A 73 DLLEDATQPGRVALELRSVP--LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIAS 148 (328)
T ss_dssp HHHHHHTSTTCCEEEEESSC--CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGG
T ss_pred HHHhcccccceeEEEccCCC--chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhc
Confidence 33444455799999998743 33788888899999999999998763 355788999999999999885 23334778
Q ss_pred CCcccEEEeeccCCcceee-----------cCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccc
Q 015001 185 CPLIEYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSS 250 (414)
Q Consensus 185 ~p~Le~L~l~~c~~~~~l~-----------i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~ 250 (414)
+++|++|++++|.....+. +..+++|+.|++++| .+..++ ..+++|++|+++++....++..+..
T Consensus 149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~ 227 (328)
T 4fcg_A 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227 (328)
T ss_dssp CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence 9999999999987654331 122677777777777 333332 2456777777776664334445666
Q ss_pred cccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccCCceEe
Q 015001 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~ 314 (414)
+++|+.|++++|.+... ++..+..+++|+.|++++|.....++. .+++|++|++++|...+.+
T Consensus 228 l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 228 LPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CTTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 67777777766654432 222345567777777777655544442 5566677777776665544
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=2.3e-15 Score=140.53 Aligned_cols=206 Identities=20% Similarity=0.247 Sum_probs=161.2
Q ss_pred CCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001 138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (414)
Q Consensus 138 ~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~ 214 (414)
..++++|+++++.+... .....+++|++|+|+++.+. .+...+..+++|++|++++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 47899999999987533 55777999999999999885 23334678999999999998654 33 356689999999
Q ss_pred EeecCCCceEee------------eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEE
Q 015001 215 LVNTSDIKRVEI------------KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (414)
Q Consensus 215 l~~~~~l~~~~~------------~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (414)
+++|.....++. .+++|++|+++++....++..++.+++|++|+++++.+.. ++..+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 999844333322 3899999999998855666678899999999999998874 33447789999999
Q ss_pred ecccccccccccc---cccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 283 ~l~~c~~~~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
++++|.....++. .+++|+.|++++|...+.++ ...++|+.|.+.++.. ..+.++++|+.+.+..+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 9999866666553 67899999999998877664 3457788888888654 56777888888887644
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.58 E-value=6.7e-15 Score=138.39 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=98.6
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+. ...++. +..+++|++|++++|.+...+.+..+++|++|+++++.+..... +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~--i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQ--ITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEEC
T ss_pred CCccEEEccCCc--cccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEEC
Confidence 355555554421 122333 44555566666665555444445555566666665555422111 445555566655
Q ss_pred eccCCccee-ecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001 194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (414)
Q Consensus 194 ~~c~~~~~l-~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (414)
++|.....+ .+..+++|+.|++++| .+..+. ..+++|++|+++++....+.. +..+++|+.|++.++.+.+...
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCcccccchhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-
Confidence 555433222 2334455555555555 111111 134555555555544211111 4444555555555444433111
Q ss_pred hhhccCCCCcEEecccccccccc-cccccccceEEeeccCCce-EeeccCCCeeeEEEeCcee---EEeccCCccceEEE
Q 015001 271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSL 345 (414)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~-~~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l 345 (414)
+..+++|+.|++++|...... ...+++|+.|++++|.... +.....++|+.+.+.++.. ..+..+++|+.|++
T Consensus 217 --~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (347)
T 4fmz_A 217 --VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL 294 (347)
T ss_dssp --GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred --hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence 344455555555554211110 2244455555555442211 0012234455555544433 22344455555555
Q ss_pred Eee
Q 015001 346 CFS 348 (414)
Q Consensus 346 ~~~ 348 (414)
+.+
T Consensus 295 ~~n 297 (347)
T 4fmz_A 295 NNN 297 (347)
T ss_dssp CSS
T ss_pred cCC
Confidence 544
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.55 E-value=3.3e-15 Score=155.32 Aligned_cols=229 Identities=19% Similarity=0.129 Sum_probs=112.4
Q ss_pred CCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHH--HHHhCCCc
Q 015001 115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCPL 187 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~--~ll~~~p~ 187 (414)
++++|+++.+.. ...+|. .+..+++|++|++++|.+... .....+++|++|+|+++.++..... ..+.++++
T Consensus 101 ~L~~L~Ls~n~l-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 101 SLTSLDLSRNSL-SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TCCEEECCSSEE-EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCEEECCCCcC-CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 555555544211 112333 455555566666655544322 1124555666666655555222111 12455666
Q ss_pred ccEEEeeccCCcceeecCCCCCCceEEEeecCC---CceEeeeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD---IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 188 Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~---l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
|++|++++|..........+++|+.|++++|.- +.. ...+++|++|+++++. ....+..+..+++|++|+++++.
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 666666655433333334456666666665511 111 1245566666666554 11223345556666666666555
Q ss_pred CchHHHHhhhccCCCCcEEecccccccccccc----cccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----- 331 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~----- 331 (414)
+.+.. +. ..+++|++|+++++.....++. .+++|++|++++|...+.++ ...++|++|.+.++..
T Consensus 259 l~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip 335 (768)
T 3rgz_A 259 FVGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335 (768)
T ss_dssp CEESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred ccCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCC
Confidence 44311 11 1455666666666533322222 23666777766664432222 2345666666666544
Q ss_pred -EEeccCCccceEEEEee
Q 015001 332 -SFSSNALSLSETSLCFS 348 (414)
Q Consensus 332 -~~~~~~~~L~~L~l~~~ 348 (414)
..+.++++|+.|+++.+
T Consensus 336 ~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 336 MDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp HHHHTTCTTCCEEECCSS
T ss_pred HHHHhcCCCCCEEeCcCC
Confidence 12556677777777665
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=2.2e-14 Score=134.87 Aligned_cols=227 Identities=14% Similarity=0.144 Sum_probs=172.3
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
.++++++++..+. ...+|. +..+++|++|++++|.+...+....+++|++|++++|.++.- . .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~--i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEK--VASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCc--cccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence 4689999997643 234443 677899999999999887665588999999999999988432 2 378999999999
Q ss_pred eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (414)
Q Consensus 193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (414)
+++|.....-.+..+++|+.|++++|..+..+. ..+++|++|+++++...... .+..+++|++|+++++.+... .
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~ 193 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDI--S 193 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECTTSCCCCC--G
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch-hhccCCCCCEEEccCCccccc--c
Confidence 999865433346778999999999995444333 26789999999988733222 278899999999999887652 2
Q ss_pred hhhccCCCCcEEecccccccccc-cccccccceEEeeccCCceEe-eccCCCeeeEEEeCcee---EEeccCCccceEEE
Q 015001 271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI---SFSSNALSLSETSL 345 (414)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l 345 (414)
. +..+++|+.|+++++...... ...+++|++|++++|.....- ....++|+.+.+.++.. ..+..+++|+.|++
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 2 678999999999996332222 347889999999998643211 34568899999988866 44677899999999
Q ss_pred Eeec
Q 015001 346 CFSS 349 (414)
Q Consensus 346 ~~~~ 349 (414)
+.+.
T Consensus 273 ~~n~ 276 (347)
T 4fmz_A 273 GSNQ 276 (347)
T ss_dssp CSSC
T ss_pred cCCc
Confidence 8873
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.52 E-value=7.1e-15 Score=136.27 Aligned_cols=230 Identities=15% Similarity=0.076 Sum_probs=131.4
Q ss_pred CCeEEEEEecCCc-cccCCccccCCCcccEEEecC-cccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 115 EVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 115 ~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+|++|++....-. ...+|..+..+++|++|++++ +.+. .+..+..+++|++|+|+++.++.. +...+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence 5666776653221 125667777777777777774 4443 234566777777777777766311 1123566777777
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCc-eEee---ecc-ceeeeEeeeecc-cceeeeccccccCceeEeecc
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIK-RVEI---KTS-NVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFL 262 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~-~~~~---~~p-~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~ 262 (414)
|++++|.....+ .+..+++|+.|++++| .+. .++. ..+ +|++|+++++.. ...+..+..++ |+.|+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 777776443221 3445677777777777 332 2221 334 677777777652 12333445554 777777777
Q ss_pred CCchHHHHhhhccCCCCcEEeccccccccccc--ccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee----EE
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SF 333 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~--~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~----~~ 333 (414)
.+... ....+..+++|+.|+++++......+ ..+++|++|++++|...+.++ ...++|+.+.+.++.. ..
T Consensus 208 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 66542 23345667777777777753322222 255677777777765543332 2335566666665544 11
Q ss_pred eccCCccceEEEEee
Q 015001 334 SSNALSLSETSLCFS 348 (414)
Q Consensus 334 ~~~~~~L~~L~l~~~ 348 (414)
..++++|+.+++..+
T Consensus 287 ~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 287 GGNLQRFDVSAYANN 301 (313)
T ss_dssp STTGGGSCGGGTCSS
T ss_pred CccccccChHHhcCC
Confidence 244556666665544
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.49 E-value=3e-14 Score=144.21 Aligned_cols=216 Identities=17% Similarity=0.120 Sum_probs=87.2
Q ss_pred cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee----e
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----D 203 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l----~ 203 (414)
.+|..+..+++|++|++++|.+... .....+++|++|+++++.+........+..+++|++|++++|...... .
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3444444444444444444433221 223344444444444443311111111334444444444444332111 1
Q ss_pred cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001 204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (414)
+..+++|+.|++++| .+..+. ..+++|++|+++++.... ....+..+++|+.|+++++.+... ....+..++
T Consensus 372 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLP 449 (606)
T ss_dssp TTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCT
T ss_pred cccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCCC
Confidence 333445555555544 222221 123455555555443111 011244455555555555544331 122234455
Q ss_pred CCcEEecccccccc------cccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceE
Q 015001 278 LLEYLSMTKCHKLT------SVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSET 343 (414)
Q Consensus 278 ~L~~L~l~~c~~~~------~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L 343 (414)
+|+.|+++++.... .....+++|+.|++++|......+ ...++|+.+.+.++.. ..+.++++| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 55555555543221 111244555555555553322211 2234555555555443 233444444 44
Q ss_pred EEEee
Q 015001 344 SLCFS 348 (414)
Q Consensus 344 ~l~~~ 348 (414)
+++.+
T Consensus 529 ~L~~N 533 (606)
T 3t6q_A 529 NLASN 533 (606)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 44444
No 11
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=1.5e-13 Score=134.55 Aligned_cols=204 Identities=18% Similarity=0.132 Sum_probs=90.1
Q ss_pred CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEe
Q 015001 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~ 216 (414)
.+++|++|++++|.+........+++|++|+++++.+..... +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred cCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence 344444444444444333334444455555555444421111 33445555555554432211123334555555555
Q ss_pred ecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc-
Q 015001 217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV- 293 (414)
Q Consensus 217 ~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l- 293 (414)
+| .+..+. ..+++|++|+++++....... +..+++|+.|+++++.+.+. .. +..+++|+.|++++|......
T Consensus 252 ~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~ 326 (466)
T 1o6v_A 252 NN-QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDI--SP-ISNLKNLTYLTLYFNNISDISP 326 (466)
T ss_dssp SS-CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCC--GG-GGGCTTCSEEECCSSCCSCCGG
T ss_pred CC-ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCc--hh-hcCCCCCCEEECcCCcCCCchh
Confidence 55 111111 134555555555544221111 44555555555555554431 11 345556666666554222111
Q ss_pred cccccccceEEeeccCCceE-eeccCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001 294 RISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (414)
Q Consensus 294 ~~~~~~L~~L~l~~c~~l~~-~~~~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~ 348 (414)
...+++|+.|++++|..... -....++|+.+.+.++.. ..+.++++|+.|+++.+
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCE
T ss_pred hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCC
Confidence 12455666666655532211 012334555555555544 22455566666666544
No 12
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.48 E-value=6.3e-14 Score=134.00 Aligned_cols=229 Identities=15% Similarity=0.159 Sum_probs=104.0
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++.... ...++. .+..+++|++|++++|.+... ..+..+++|++|+++++.++. ....++..+++|++
T Consensus 69 ~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 69 RQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTT 145 (390)
T ss_dssp CCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred ccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCCcE
Confidence 566666665422 222332 344556666666666655332 234556666666666665531 11112345566666
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCceEee-ec-------------------cceeeeEeeeecccce----
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-KT-------------------SNVNALAIHQTYLFPI---- 244 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~-~~-------------------p~L~~L~l~~~~~~~~---- 244 (414)
|++++|...... .+..+++|+.|++++| .+..+.. .. ++|++|+++++....+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 666655332111 1333455555555554 1111111 11 2333333333321111
Q ss_pred ----------------eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEe
Q 015001 245 ----------------EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLIL 305 (414)
Q Consensus 245 ----------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l 305 (414)
...+..+++|++|+++++.+... ....+..+++|+.|+++++. +..++ ..+++|+.|++
T Consensus 225 ~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEEC
T ss_pred cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEEC
Confidence 01233445555555555544331 11223445555555555531 11111 23455566665
Q ss_pred eccCCceEee---ccCCCeeeEEEeCcee--EEeccCCccceEEEEeec
Q 015001 306 ECCDKLIQVE---IETPNLSIFKYHGDLI--SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 306 ~~c~~l~~~~---~~~p~L~~l~~~~~~~--~~~~~~~~L~~L~l~~~~ 349 (414)
++|.. .+++ ...++|+.|.+.++.. ..+...++|++|+++.++
T Consensus 303 ~~n~l-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 303 SHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred CCCcc-eecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCC
Confidence 55532 1221 1234566666665554 345556677777776664
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=3.1e-13 Score=132.35 Aligned_cols=226 Identities=16% Similarity=0.126 Sum_probs=117.9
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
.+++++|++..+. ...++. +..+++|++|++++|.+...+....+++|++|++++|.+..-. .+..+++|++|.
T Consensus 89 l~~L~~L~l~~n~--l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~ 162 (466)
T 1o6v_A 89 LTKLVDILMNNNQ--IADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLS 162 (466)
T ss_dssp CTTCCEEECCSSC--CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEE
T ss_pred cccCCEEECCCCc--cccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEee
Confidence 3588888886532 233444 6778888888888887765555778888899998888874321 155667777776
Q ss_pred eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHH--
Q 015001 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW-- 268 (414)
Q Consensus 193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 268 (414)
+.++.. ....+..+++|+.|++++| .+..+. ..+++|++|+++++...... .++.+++|++|+++++.+....
T Consensus 163 l~~~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l 239 (466)
T 1o6v_A 163 FGNQVT-DLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGTL 239 (466)
T ss_dssp EEESCC-CCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGG
T ss_pred cCCccc-CchhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCCcccchhh
Confidence 653211 1112444566666666655 122211 13455555555554411111 1334445555555444433210
Q ss_pred ------------------HHhhhccCCCCcEEecccccccccc-cccccccceEEeeccCCceEe-eccCCCeeeEEEeC
Q 015001 269 ------------------LCNGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHG 328 (414)
Q Consensus 269 ------------------~~~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~ 328 (414)
... +..+++|+.|+++++...... ...+++|+.|++++|...... ....++|+.+.+.+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 318 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCS
T ss_pred hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcC
Confidence 011 334445555555543211100 124455555555554322111 12345566666666
Q ss_pred cee---EEeccCCccceEEEEee
Q 015001 329 DLI---SFSSNALSLSETSLCFS 348 (414)
Q Consensus 329 ~~~---~~~~~~~~L~~L~l~~~ 348 (414)
+.. ..+..+++|++|+++.+
T Consensus 319 n~l~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 319 NNISDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp SCCSCCGGGGGCTTCCEEECCSS
T ss_pred CcCCCchhhccCccCCEeECCCC
Confidence 544 22456667777777655
No 14
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=5.3e-14 Score=146.24 Aligned_cols=174 Identities=16% Similarity=0.126 Sum_probs=114.6
Q ss_pred cCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~ 214 (414)
..+++|++|++++|.+... +....+++|++|++++|.++... ...+..+++|++|++++|.....+....+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 5677888888888876532 44778888888888888875333 334678899999999888655433333578888888
Q ss_pred EeecC---CCceEee-eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccc
Q 015001 215 LVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (414)
Q Consensus 215 l~~~~---~l~~~~~-~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (414)
+++|. .+..... .+++|++|+++++. ....+..++++++|++|+++++.+.+......+..+++|+.|+++++..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88871 1111111 24888888888876 2234556778888888888888765432233356788888888888643
Q ss_pred cccccc---ccc-ccceEEeeccCC
Q 015001 290 LTSVRI---SSP-CLKTLILECCDK 310 (414)
Q Consensus 290 ~~~l~~---~~~-~L~~L~l~~c~~ 310 (414)
...++. .++ +|+.|++++|..
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEE
T ss_pred CccccHHHHhhhcCCcEEEccCCCc
Confidence 323322 222 566666665543
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.47 E-value=6.5e-14 Score=141.74 Aligned_cols=148 Identities=16% Similarity=0.207 Sum_probs=78.9
Q ss_pred ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~ 214 (414)
+..+++|++|+++++.+...+....+++|++|++.+|.++ .+..+ .+++|++|++.+|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 4445677777777766644445566667777777777662 12222 6677777777776555444555566666666
Q ss_pred EeecCCCceEe------eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 215 LVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 215 l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+++| .+..+. ..+++|++|+++++....++..+..+++|+.|+++++.+........+..+++|+.|++++|
T Consensus 357 ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 6666 332221 13456666666655422233344455555555555554433211122334444444444443
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=7.7e-14 Score=136.09 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=68.5
Q ss_pred ceeeeEeeeecccc-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEe
Q 015001 230 NVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLIL 305 (414)
Q Consensus 230 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l 305 (414)
+|++|+++++.... .+..++.+++|++|+++++.+.... ...+..+++|+.|+++++..... ....+++|+.|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccC-hhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 44444444443111 1223556677777777777665421 22345667777777777532221 1235677788888
Q ss_pred eccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001 306 ECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 306 ~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~ 349 (414)
++|......+ ...++|+.|.+.++.. ..+.++++|+.|+++.++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 7775433222 2446777777777655 234667788888887773
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=6.4e-14 Score=141.49 Aligned_cols=102 Identities=20% Similarity=0.159 Sum_probs=63.5
Q ss_pred eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccc--cccccccccccceEEeeccCCceEee---ccCCCe
Q 015001 247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK--LTSVRISSPCLKTLILECCDKLIQVE---IETPNL 321 (414)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~--~~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L 321 (414)
.+..+++|+.|+++++.+.+. .+..+..+++|+.|+++++.. +......+++|+.|++++|... .++ ...++|
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L 326 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 326 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred hhccCCCCCEEECCCCccCCC-CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence 355667777777776666542 122355667777777777522 1112224677788887776543 222 234677
Q ss_pred eeEEEeCcee--EEeccCCccceEEEEeecc
Q 015001 322 SIFKYHGDLI--SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 322 ~~l~~~~~~~--~~~~~~~~L~~L~l~~~~~ 350 (414)
+.|.+.++.. ..+..+++|+.|+++.++.
T Consensus 327 ~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 327 ENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 7888777766 5567778999999988753
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.46 E-value=2.3e-13 Score=132.69 Aligned_cols=218 Identities=14% Similarity=0.101 Sum_probs=122.0
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+.-. .+| +..+++|++|++++|.+... ....+++|++|+++++.++.- . +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 45555555543211 122 44455666666666555432 245556666666666655321 1 455666666666
Q ss_pred eccCCcceeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh
Q 015001 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (414)
Q Consensus 194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (414)
++|... .+.+..+++|+.|+++.|..+..+.+ .+++|++|+++++....++ ++.+++|+.|+++++.+... -
T Consensus 135 ~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~ 207 (457)
T 3bz5_A 135 ARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----D 207 (457)
T ss_dssp TTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----C
T ss_pred CCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee----c
Confidence 665432 23455566666666666643433333 4567777777766633322 66777777777777776653 1
Q ss_pred hccCCCCcEEeccccccccccc-ccccccceEEeeccCCceEeeccCCCeeeEEE----------eCcee---EEeccCC
Q 015001 273 ISKLPLLEYLSMTKCHKLTSVR-ISSPCLKTLILECCDKLIQVEIETPNLSIFKY----------HGDLI---SFSSNAL 338 (414)
Q Consensus 273 ~~~~~~L~~L~l~~c~~~~~l~-~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~----------~~~~~---~~~~~~~ 338 (414)
+..+++|+.|+++++... .++ ..+++|+.|++++|.....-.-.+++|+.+.+ .++.. ....+++
T Consensus 208 l~~l~~L~~L~Ls~N~l~-~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CTTCTTCSEEECCSSCCS-CCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cccCCCCCEEECcCCccc-ccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 566778888888775322 233 36678888888776543211223344444433 33321 4456678
Q ss_pred ccceEEEEee
Q 015001 339 SLSETSLCFS 348 (414)
Q Consensus 339 ~L~~L~l~~~ 348 (414)
+|+.|+++.+
T Consensus 287 ~L~~L~Ls~n 296 (457)
T 3bz5_A 287 KIKELDVTHN 296 (457)
T ss_dssp TCCCCCCTTC
T ss_pred cCCEEECCCC
Confidence 8888888766
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=1e-13 Score=140.36 Aligned_cols=232 Identities=20% Similarity=0.172 Sum_probs=169.2
Q ss_pred CCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
+++++++.. .....++.. +..+++|++|++++|.+... .....+++|++|+++++.+..... ..+..+++|++|+
T Consensus 255 ~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQK--HYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTT--CCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred ceeEEEeec--CccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence 344444433 233345543 66689999999999987533 567889999999999998753322 3367899999999
Q ss_pred eeccCCccee---ecCCCCCCceEEEeecCCCceEe------eeccceeeeEeeeecccce-eeeccccccCceeEeecc
Q 015001 193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL 262 (414)
Q Consensus 193 l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 262 (414)
+++|.....+ .+..+++|+.|++++| .+..+. ..+++|++|+++++..... +..+..+++|++|+++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9998655333 3556899999999998 444443 2578999999998872222 345778999999999998
Q ss_pred CCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceE-e-----eccCCCeeeEEEeCcee--
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQ-V-----EIETPNLSIFKYHGDLI-- 331 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~-~-----~~~~p~L~~l~~~~~~~-- 331 (414)
.+........+..+++|+.|+++++...... ...+++|+.|++++|...+. + ....++|+.|.+.++..
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 8765444444678999999999997443322 33689999999999875431 1 23557899999998876
Q ss_pred ---EEeccCCccceEEEEeecc
Q 015001 332 ---SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 332 ---~~~~~~~~L~~L~l~~~~~ 350 (414)
..+.++++|++|+++.+..
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCC
T ss_pred cChhhhccccCCCEEECCCCcc
Confidence 3467789999999998843
No 20
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.45 E-value=3.1e-13 Score=136.03 Aligned_cols=225 Identities=16% Similarity=0.049 Sum_probs=128.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+. ...+|. .+++|++|++++|.+...+. .+++|++|++++|.++. + -..+++|+.|++
T Consensus 61 ~~L~~L~L~~N~--l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l---~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNN--LTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--L---PALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCC--CSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--C---CCCCTTCCEEEC
T ss_pred CCCcEEEecCCC--CCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--C---CCCCCCcCEEEC
Confidence 477777776532 224554 35777777777776653222 66777777777776532 1 114567777777
Q ss_pred eccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH------
Q 015001 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE------ 267 (414)
Q Consensus 194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------ 267 (414)
++|... .+.. .+++|+.|++++| .+..++...++|+.|+++++....++ ..+++|+.|++++|.+..-
T Consensus 129 ~~N~l~-~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCC-cCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 766432 1211 1366777777766 33333323344444444444322111 2234444444444433320
Q ss_pred ---------HHHhhhccCCCCcEEecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCcee----EEe
Q 015001 268 ---------WLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFS 334 (414)
Q Consensus 268 ---------~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~----~~~ 334 (414)
.+..+...+++|+.|+++++ .+..++..+++|+.|++++|. +..++...++|+.|.+.++.. ..+
T Consensus 203 L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 203 LYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCSCCGGG
T ss_pred hhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCcCCHHH
Confidence 00011223467777777775 344455667888888888873 445555667899998888866 446
Q ss_pred ccCCccceEEEEeecchhhhHHHH
Q 015001 335 SNALSLSETSLCFSSHLMVNIEWV 358 (414)
Q Consensus 335 ~~~~~L~~L~l~~~~~~~~~~~~~ 358 (414)
.++++|+.|+++.|+........+
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHHHH
Confidence 788999999999885443333333
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.45 E-value=1.9e-13 Score=133.23 Aligned_cols=240 Identities=13% Similarity=0.080 Sum_probs=175.3
Q ss_pred CCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcc
Q 015001 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS 162 (414)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 162 (414)
..++.+.+....... + .....+++++|++..+.-. .++ +..+++|++|++++|.+... ....+++
T Consensus 64 ~~L~~L~Ls~n~l~~------~----~~~~l~~L~~L~Ls~N~l~--~~~--~~~l~~L~~L~L~~N~l~~l-~~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTSNNITT------L----DLSQNTNLTYLACDSNKLT--NLD--VTPLTKLTYLNCDTNKLTKL-DVSQNPL 128 (457)
T ss_dssp TTCSEEECCSSCCSC------C----CCTTCTTCSEEECCSSCCS--CCC--CTTCTTCCEEECCSSCCSCC-CCTTCTT
T ss_pred CCCCEEEccCCcCCe------E----ccccCCCCCEEECcCCCCc--eee--cCCCCcCCEEECCCCcCCee-cCCCCCc
Confidence 467777766443211 1 1223468999999874322 333 67789999999999988654 3788999
Q ss_pred cceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecc
Q 015001 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL 241 (414)
Q Consensus 163 L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~ 241 (414)
|++|+++++.++.- . +..+++|++|++++|.....+.+..+++|+.|++++| .+..+++ .+++|+.|+++++..
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence 99999999988442 1 6789999999999997777777888899999999999 4444444 578999999999874
Q ss_pred cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccccccc----------ccceEEeeccCCc
Q 015001 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP----------CLKTLILECCDKL 311 (414)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~----------~L~~L~l~~c~~l 311 (414)
..+ .++.+++|+.|+++++.+.+ ++ +..+++|+.|+++++.....-...++ +|+.|++++|...
T Consensus 204 ~~~--~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 204 TKL--DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp SCC--CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred Cee--ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 433 58889999999999999877 22 67899999999998632221122344 4556666667666
Q ss_pred eEeec-cCCCeeeEEEeCcee-------------EEeccCCccceEEEEee
Q 015001 312 IQVEI-ETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 312 ~~~~~-~~p~L~~l~~~~~~~-------------~~~~~~~~L~~L~l~~~ 348 (414)
++++. .+++|+.+.+.++.. ..+.+.++|+.|+++.+
T Consensus 278 ~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 66654 347899988887753 23455678888888766
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=136.04 Aligned_cols=230 Identities=18% Similarity=0.092 Sum_probs=140.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
+++++|++..+.. ....|..+..+++|++|++++|.+... ..+..+++|++|+|+++.+.... ...+..+++|++|
T Consensus 56 ~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCcc-CEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence 4677777754311 112244566677777777777766433 23566777777777777653211 1224567777777
Q ss_pred EeeccCCcce--eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccce-eeeccccccCceeEeeccCC
Q 015001 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (414)
Q Consensus 192 ~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 264 (414)
++.+|..... -.+..+++|+.|++++| .+..+. ..+++|+.|+++++....+ ...+..+++|+.|+++++..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 7777644321 13455677888888777 333332 1467778887777652221 22466777888888876654
Q ss_pred chHHHHhhhccCCCCcEEeccccccccccc----ccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----E
Q 015001 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----S 332 (414)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~ 332 (414)
....... .....+|+.|+++++. +..++ ..+++|+.|++++|...... ....++|+.|.+.++.. .
T Consensus 213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 3321111 2233478888888763 22333 36788999999887643211 23457788888888765 3
Q ss_pred EeccCCccceEEEEee
Q 015001 333 FSSNALSLSETSLCFS 348 (414)
Q Consensus 333 ~~~~~~~L~~L~l~~~ 348 (414)
.+.++++|+.|+++.+
T Consensus 291 ~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN 306 (477)
T ss_dssp TBTTCTTCCEEECCSS
T ss_pred HhcCcccCCEEECCCC
Confidence 5677899999999877
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.45 E-value=3.2e-13 Score=132.58 Aligned_cols=231 Identities=16% Similarity=0.094 Sum_probs=160.7
Q ss_pred CCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++... ....+|.. +..+++|++|++++|.+.. +..+..+++|+.|+++++.+..... ..+..+++|++
T Consensus 80 ~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 156 (477)
T 2id5_A 80 FNLRTLGLRSN--RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ 156 (477)
T ss_dssp TTCCEEECCSS--CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred ccCCEEECCCC--cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence 58899988763 23456654 4568999999999987643 2557788999999999886632211 22567899999
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
|++.+|...... .+..+++|+.|++.++ .+..+. ..+++|++|+++++. ...++.......+|++|+++++.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 999988543211 3566789999999988 444433 256889999998865 22233333445589999999888
Q ss_pred CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----E
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----S 332 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~ 332 (414)
+.... ...+..+++|+.|+++++..... ....+++|+.|++++|...... ....++|+.|.+.++.. .
T Consensus 236 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 236 LTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CCSCC-HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ccccC-HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence 76422 23467789999999998632211 1236788999999887654322 23457888888888765 4
Q ss_pred EeccCCccceEEEEeec
Q 015001 333 FSSNALSLSETSLCFSS 349 (414)
Q Consensus 333 ~~~~~~~L~~L~l~~~~ 349 (414)
.+.++++|+.|+++.++
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 56778999999998884
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.45 E-value=6.1e-14 Score=141.93 Aligned_cols=227 Identities=17% Similarity=0.094 Sum_probs=104.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
++++++++..... ..+| .+..+++|++|++++|.+...+.. .+++|+.|+++++...... -+..+++|++|++
T Consensus 285 ~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l 357 (606)
T 3vq2_A 285 ANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDL 357 (606)
T ss_dssp TTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEEC
T ss_pred CCCCEEEecCccc--hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccch---hhccCCCCCEEEC
Confidence 5777777766332 2344 455566777777777665333333 5666666666655321111 1334555555555
Q ss_pred eccCCcce----eecCCCCCCceEEEeecCCCceEe----------------------------eeccceeeeEeeeecc
Q 015001 194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRVE----------------------------IKTSNVNALAIHQTYL 241 (414)
Q Consensus 194 ~~c~~~~~----l~i~~l~~L~~L~l~~~~~l~~~~----------------------------~~~p~L~~L~l~~~~~ 241 (414)
++|..... ..+..+++|+.|++++| .+..+. ..+++|++|+++++..
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 55432211 11223444555555444 122211 1334455555544431
Q ss_pred -cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceEee--
Q 015001 242 -FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQVE-- 315 (414)
Q Consensus 242 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~~~-- 315 (414)
...+..+.++++|++|+++++.+.+...+..+..+++|+.|++++|...... ...+++|+.|++++|......+
T Consensus 437 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 1112224445555555555554443222333444555555555554222211 1244555556555554332221
Q ss_pred -ccCCCeeeEEEeCcee----EEeccCC-ccceEEEEee
Q 015001 316 -IETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFS 348 (414)
Q Consensus 316 -~~~p~L~~l~~~~~~~----~~~~~~~-~L~~L~l~~~ 348 (414)
...++|+.+++.++.. ..+...+ +|+.|+++.+
T Consensus 517 ~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp TTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred ccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence 1234455555555544 1233443 4666666555
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.44 E-value=4.9e-14 Score=130.62 Aligned_cols=214 Identities=11% Similarity=0.080 Sum_probs=152.6
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccC--CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
.+++++|++..+......+|..+..+++|++|++++|.+. .+..+..+++|++|+++++.+... +...+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 4699999998433334467888899999999999999874 345678899999999999987422 2223678999999
Q ss_pred EEeeccCCccee--ecCCCC-CCceEEEeecCCCc-eEe--eeccceeeeEeeeec-ccceeeeccccccCceeEeeccC
Q 015001 191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~-~L~~L~l~~~~~l~-~~~--~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
|++++|.....+ .+..++ +|+.|++++| .+. .++ +...+|++|+++++. ....+..+..+++|+.|+++++.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 999999764332 355566 9999999988 222 111 122239999999887 22334567889999999999988
Q ss_pred CchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCceEeec--cCCCeeeEEEeCce
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDL 330 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~--~~p~L~~l~~~~~~ 330 (414)
+... ... +..+++|+.|+++++.....++ ..+++|+.|++++|...+.++. ..++|+.+.+.+++
T Consensus 233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 7642 222 5678999999999975443333 3678999999999876555543 23445555555544
No 26
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=125.93 Aligned_cols=233 Identities=15% Similarity=0.075 Sum_probs=165.3
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++.... ...+|. .+..+++|++|++++|.+... ..+..+++|++|+++++.++.- ....+..+++|++
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 488999887633 334555 577789999999999977532 4578899999999999988432 2234678999999
Q ss_pred EEeeccCCcce---eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc
Q 015001 191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL 262 (414)
Q Consensus 191 L~l~~c~~~~~---l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~ 262 (414)
|++++|....- -.+..+++|+.|++++|..+..+.. .+++|++|+++++..... +..+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 99999855421 1355689999999999855555532 578999999999873322 446788999999999999
Q ss_pred CCchHHHHhhhccCCCCcEEeccccccccc----c--cccccccceEEeeccCCce----Ee---eccCCCeeeEEEeCc
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTS----V--RISSPCLKTLILECCDKLI----QV---EIETPNLSIFKYHGD 329 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----l--~~~~~~L~~L~l~~c~~l~----~~---~~~~p~L~~l~~~~~ 329 (414)
.+... .......+++|+.|+++++..... + ....+.++.+++..+.... .+ ....++|+.+++.++
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ccccc-hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 87542 233455689999999999632221 1 1134567777776654321 11 234578888888887
Q ss_pred ee-----EEeccCCccceEEEEeecc
Q 015001 330 LI-----SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 330 ~~-----~~~~~~~~L~~L~l~~~~~ 350 (414)
.. ..+.++++|++|+++.++.
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 66 2357789999999998843
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.44 E-value=9.6e-14 Score=128.12 Aligned_cols=219 Identities=19% Similarity=0.163 Sum_probs=141.4
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHH-HHHHHhCCCcccEEEeeccCCcce-ee
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LD 203 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~-l~~ll~~~p~Le~L~l~~c~~~~~-l~ 203 (414)
...+|..+. ++|++|+++++.+... ..+..+++|++|+|+++.++... ....+..+++|++|++++|....- -.
T Consensus 19 l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 345555432 6788888888877543 23567888888888887764221 111234688888888888754321 13
Q ss_pred cCCCCCCceEEEeecCCCceE-----eeeccceeeeEeeeeccc-ceeeeccccccCceeEeeccCCchHHHHhhhccCC
Q 015001 204 LVNLSNLKEIILVNTSDIKRV-----EIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~-----~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (414)
+..+++|+.|+++++ .+..+ ...+++|++|+++++... .....+..+++|++|+++++.+.+...+..+..++
T Consensus 97 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 556788888888877 22211 225678888888877622 12234667788888888888776533445567788
Q ss_pred CCcEEeccccccccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccC-CccceEEE
Q 015001 278 LLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSL 345 (414)
Q Consensus 278 ~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l 345 (414)
+|+.|+++++..... ....+++|+.|++++|...... ....++|+.+.+.++.. ..+..+ ++|+.|++
T Consensus 176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L 255 (306)
T 2z66_A 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255 (306)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence 888888888633222 1235678888888887643211 12347788888887765 344555 48999999
Q ss_pred Eeec
Q 015001 346 CFSS 349 (414)
Q Consensus 346 ~~~~ 349 (414)
+.++
T Consensus 256 ~~N~ 259 (306)
T 2z66_A 256 TQND 259 (306)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8884
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.43 E-value=1.9e-13 Score=133.30 Aligned_cols=233 Identities=15% Similarity=0.075 Sum_probs=137.5
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEEcChHHHH-HHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~~p~Le~ 190 (414)
+++++|++..+.....--+..+..+++|++|++++|.+.. +..+..+++|++|++++|.++...+. ..+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 5788888876432212223456678889999998887642 35677888999999988887543332 23677889999
Q ss_pred EEeeccCCccee--e-cCCCCCCceEEEeecCCCceEee--------------------------------------ecc
Q 015001 191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVEI--------------------------------------KTS 229 (414)
Q Consensus 191 L~l~~c~~~~~l--~-i~~l~~L~~L~l~~~~~l~~~~~--------------------------------------~~p 229 (414)
|++++|...... . +..+++|+.|++++| .+..+.. ..+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999888654321 1 556788999998887 2221110 113
Q ss_pred ceeeeEeeeecccc-ee--------------eecc-------------------------ccccCceeEeeccCCchHHH
Q 015001 230 NVNALAIHQTYLFP-IE--------------VNVS-------------------------SCGNLKCLKFDFLPIEDEWL 269 (414)
Q Consensus 230 ~L~~L~l~~~~~~~-~~--------------~~~~-------------------------~~~~L~~L~l~~~~~~~~~~ 269 (414)
+|++|+++++.... .+ ..+. ..++|+.|+++++.+... .
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~ 291 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L 291 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence 45555555443100 00 0000 013555555555554431 2
Q ss_pred HhhhccCCCCcEEecccccccccc---cccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCC
Q 015001 270 CNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNAL 338 (414)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~ 338 (414)
...+..+++|+.|+++++...... ...+++|+.|++++|...+.. ....++|+.|.+.++.. ..+.+++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 223456677777777775332221 225677888888777543221 12456788888877765 2456678
Q ss_pred ccceEEEEee
Q 015001 339 SLSETSLCFS 348 (414)
Q Consensus 339 ~L~~L~l~~~ 348 (414)
+|+.|+++.+
T Consensus 372 ~L~~L~L~~N 381 (455)
T 3v47_A 372 NLKELALDTN 381 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEECCCC
Confidence 8888888776
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=5.2e-15 Score=138.48 Aligned_cols=194 Identities=19% Similarity=0.245 Sum_probs=141.9
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEE-EcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREV-CADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~-~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++..+......+|..+..+++|++|++++|.+... .....+++|++|++++| .+++..+..++.++++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 58999998765433333777788899999999999976532 44567999999999999 5687778888999999999
Q ss_pred EEeeccCCccee----ecCCCC-CCceEEEeecC-CCc-----eEeeeccceeeeEeeeec-c-cceeeeccccccCcee
Q 015001 191 LEIRSCEGLESL----DLVNLS-NLKEIILVNTS-DIK-----RVEIKTSNVNALAIHQTY-L-FPIEVNVSSCGNLKCL 257 (414)
Q Consensus 191 L~l~~c~~~~~l----~i~~l~-~L~~L~l~~~~-~l~-----~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~~L~~L 257 (414)
|++++|..+... .+..++ +|++|++++|. .+. .....+|+|++|+++++. . ......+..+++|++|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 999999444321 244578 99999999983 232 222368999999999987 2 2334467889999999
Q ss_pred Eeecc-CCchHHHHhhhccCCCCcEEeccccccccc--ccccccccceEEeeccCC
Q 015001 258 KFDFL-PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VRISSPCLKTLILECCDK 310 (414)
Q Consensus 258 ~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~--l~~~~~~L~~L~l~~c~~ 310 (414)
+++++ .+.+..+. .+..+++|+.|++++| ++. +..-...|+.|++++|..
T Consensus 253 ~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 253 SLSRCYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp ECTTCTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTCHHHHHHHSTTSEESCCCS
T ss_pred eCCCCCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHHHHHHHhhCcceEEecccC
Confidence 99988 45554443 3677999999999998 222 211223477777765543
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.41 E-value=2e-13 Score=134.20 Aligned_cols=187 Identities=17% Similarity=0.107 Sum_probs=82.0
Q ss_pred cccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceE
Q 015001 134 IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI 213 (414)
Q Consensus 134 ~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L 213 (414)
.+..+++|++|++++|.+.....+..+++|++|+|++|.++. +...|+|++|++++|.... +....+++|+.|
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~-~~~~~l~~L~~L 125 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISR-VSCSRGQGKKNI 125 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCC-EEECCCSSCEEE
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCC-CCccccCCCCEE
Confidence 344455555555555544322224445555555555554421 1123455555555443321 112223444444
Q ss_pred EEeecCCCceEeeeccceeeeEeeeeccc-ceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc
Q 015001 214 ILVNTSDIKRVEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS 292 (414)
Q Consensus 214 ~l~~~~~l~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~ 292 (414)
++++| ... ..+..++.+++|+.|+++++.+.+.....+...+++|+.|+++++.. ..
T Consensus 126 ~L~~N---------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l-~~ 183 (487)
T 3oja_A 126 YLANN---------------------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YD 183 (487)
T ss_dssp ECCSS---------------------CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-CE
T ss_pred ECCCC---------------------CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-cc
Confidence 44444 311 11223344455555555544444322222223445555555555321 11
Q ss_pred cc--ccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee----EEeccCCccceEEEEeecc
Q 015001 293 VR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 293 l~--~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~~~ 350 (414)
++ ..+++|+.|++++|... .++ ...++|+.|.+.++.. ..+..+++|+.|+++.++.
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 184 VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp EECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccccccCCCCCEEECCCCCCC-CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 11 12445555555544322 111 1224455555544433 2345567888888877743
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.41 E-value=4e-13 Score=125.35 Aligned_cols=189 Identities=16% Similarity=0.200 Sum_probs=108.4
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
+++++|++..+. ...+ |..+..+++|++|++++|.+...+ ...+++|++|+++++.++... ...+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccC-hhhcccccEEECCCCcccccC-HhHhcCCccccEEE
Confidence 467777765432 1222 445566677777777777654321 112367777777777663222 22356677777777
Q ss_pred eeccCCcc----eeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeecccce-eeeccccccCceeEeeccCCch
Q 015001 193 IRSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 193 l~~c~~~~----~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~ 266 (414)
+++|.... .-.+..+++|+.|++++| .+..++. ..++|++|+++++..... +..+..+++|+.|+++++.+..
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 77765421 113444677777777776 3333332 236777777777652222 2346667777777777776654
Q ss_pred HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccC
Q 015001 267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCD 309 (414)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~ 309 (414)
.. ...+..+++|+.|+++++. +..++ ..+++|+.|++++|.
T Consensus 231 ~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 231 VD-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EC-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred eC-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 21 1234566777777777752 22332 255677777777664
No 32
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=1.2e-13 Score=128.23 Aligned_cols=219 Identities=19% Similarity=0.112 Sum_probs=114.2
Q ss_pred hhHHHHHHHHHh--CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHH
Q 015001 102 SLAGRCLGLAIE--SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAI 178 (414)
Q Consensus 102 ~~i~~~l~~~~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 178 (414)
..+...+..... +++++|++..+. ...++ ..+..+++|++|++++|.+.....+..+++|++|++++|.++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred cchhhhHHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence 344444444332 367777776532 22333 3456677777777777766433336667777777777776532
Q ss_pred HHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCceE---e-eeccceeeeEeeeeccccee-eec-cccc
Q 015001 179 ASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV---E-IKTSNVNALAIHQTYLFPIE-VNV-SSCG 252 (414)
Q Consensus 179 ~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~---~-~~~p~L~~L~l~~~~~~~~~-~~~-~~~~ 252 (414)
+..+++|++|.+++|... .+....+++|+.|++++| .+..+ . ..+++|++|+++++...... ..+ ..++
T Consensus 95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 224467777777766432 233333566666666666 22221 1 13456666666655422211 112 2455
Q ss_pred cCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc--ccccccccccceEEeeccCCceEeeccCCCeeeEEEeCce
Q 015001 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL--TSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDL 330 (414)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~--~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~ 330 (414)
+|++|+++++.+... .. ...+++|+.|+++++... ..-...+++|+.|++++|... .++
T Consensus 170 ~L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~--------------- 230 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE--------------- 230 (317)
T ss_dssp TCCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EEC---------------
T ss_pred cCCEEECCCCcCccc--cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chh---------------
Confidence 666666666555432 11 223556666666654211 111224455555555554221 111
Q ss_pred eEEeccCCccceEEEEeecc
Q 015001 331 ISFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 331 ~~~~~~~~~L~~L~l~~~~~ 350 (414)
..+..+++|+.|+++.++.
T Consensus 231 -~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 231 -KALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp -TTCCCCTTCCEEECTTCCC
T ss_pred -hHhhcCCCCCEEEccCCCc
Confidence 1345667888888887744
No 33
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.40 E-value=4.6e-13 Score=136.13 Aligned_cols=171 Identities=9% Similarity=0.078 Sum_probs=116.0
Q ss_pred hCCCeEEEEEecCCccc----------------cCCcccc--CCCcccEEEecCcccC--CCCccccCcccceeEeeEEE
Q 015001 113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVC 172 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~ 172 (414)
.+++++|++....-... .+|..+. .+++|++|++++|.+. .|..+..+++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 36999999987432210 1899888 9999999999999764 34678899999999999998
Q ss_pred -cChHHHHHHHh------CCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCc-eEe--eeccceeeeEeee
Q 015001 173 -ADDQAIASLIS------GCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIK-RVE--IKTSNVNALAIHQ 238 (414)
Q Consensus 173 -~~~~~l~~ll~------~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~-~~~--~~~p~L~~L~l~~ 238 (414)
++...+..-+. .+++|++|++++|... .+ .+..+++|+.|++++| .+. .++ ..+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC-CCEEECCCCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC-cCccchhhhCCCCCCCEEECCC
Confidence 66523333333 3599999999998655 33 3567889999999988 333 332 2467888888887
Q ss_pred ecccceeeecccccc-CceeEeeccCCchHHHHhhhcc--CCCCcEEecccc
Q 015001 239 TYLFPIEVNVSSCGN-LKCLKFDFLPIEDEWLCNGISK--LPLLEYLSMTKC 287 (414)
Q Consensus 239 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~c 287 (414)
+....++..+..+++ |++|+++++.+.. ++..+.. +++|+.|+++++
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~--lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLKY--IPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCSS--CCSCCCTTCSSCEEEEECCSS
T ss_pred CccccccHhhhhhcccCcEEEccCCcCcc--cchhhhhcccCccCEEECcCC
Confidence 763344445666777 7777777766552 2222222 225555555554
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.40 E-value=7.5e-13 Score=122.28 Aligned_cols=187 Identities=19% Similarity=0.165 Sum_probs=138.2
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
.+++++|++..+. ...+| .+..+++|++|++++|.+........+++|++|+++++.++.- . .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence 3588999887643 23344 4677899999999999886655588899999999999988432 1 367899999999
Q ss_pred eeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (414)
Q Consensus 193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (414)
+++|.....-.+..+++|+.|++++| .+..+. ..+++|++|+++++....+.. +..+++|+.|+++++.+.+. .
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~ 189 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDI--S 189 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcC--h
Confidence 99986543334677899999999998 333332 257899999999887333222 78889999999998887652 2
Q ss_pred hhhccCCCCcEEecccccccccc-cccccccceEEeeccCC
Q 015001 271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDK 310 (414)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~~l-~~~~~~L~~L~l~~c~~ 310 (414)
. +..+++|+.|+++++...... ...+++|+.|++++|..
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2 677899999999996322211 23678899999988753
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.40 E-value=7.8e-13 Score=131.27 Aligned_cols=122 Identities=12% Similarity=0.093 Sum_probs=79.8
Q ss_pred eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCch-HHHHhhhccCCCCcEEeccccccccccc----cccccc
Q 015001 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL 300 (414)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L 300 (414)
.+++|++|+++++. ....+..++.+++|+.|+++++.+.. ..++..+..+++|+.|+++++.....++ ..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 56778888888776 22234456788889999998888875 2344557788899999998864433233 245778
Q ss_pred ceEEeeccCCceEeeccC-CCeeeEEEeCcee----EEeccCCccceEEEEee
Q 015001 301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 301 ~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~ 348 (414)
+.|++++|...+..+... ++|+.|.+.++.. ..+.++++|+.|+++.+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 888888776544333333 4677777766654 22335667777777665
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=6.7e-13 Score=133.16 Aligned_cols=212 Identities=17% Similarity=0.143 Sum_probs=105.0
Q ss_pred cCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce----eecC
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----LDLV 205 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~----l~i~ 205 (414)
.+|..+..+ +|++|++++|.+...+ ...+++|+.|++.++....... ...+|+|++|++++|..... ..+.
T Consensus 296 ~l~~~~~~~-~L~~L~l~~n~~~~l~-~~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 296 RVKDFSYNF-GWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp SCCBCCSCC-CCSEEEEESCBCSSCC-BCBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred hhhhhhccC-CccEEeeccCcccccC-cccccccCEEeCcCCccccccc---cccCCCCCEEeCcCCccCcccccccccc
Confidence 344444444 5555555555443211 1345555555555554421110 04556666666665543211 1233
Q ss_pred CCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccce--eeeccccccCceeEeeccCCchHHHHhhhccCCCCc
Q 015001 206 NLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLE 280 (414)
Q Consensus 206 ~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 280 (414)
.+++|+.|++++| .+..+. ..+++|++|+++++..... ...+.++++|+.|+++++.+... ....+..+++|+
T Consensus 371 ~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~ 448 (570)
T 2z63_A 371 GTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLE 448 (570)
T ss_dssp TCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCC
T ss_pred ccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCcCc
Confidence 4566666666665 222222 2455666666665541111 12345566666666666654432 222345566666
Q ss_pred EEeccccccc----ccccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001 281 YLSMTKCHKL----TSVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 281 ~L~l~~c~~~----~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
.|++++|... ......+++|+.|++++|......+ ...++|+.+.+.++.. ..+.++++|+.|+++.+
T Consensus 449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 6666665322 1122355666777776664433222 2335666666666544 23455667777777666
No 37
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=1.6e-13 Score=138.43 Aligned_cols=192 Identities=17% Similarity=0.100 Sum_probs=96.4
Q ss_pred cccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEee----------cCCCceE
Q 015001 157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVN----------TSDIKRV 224 (414)
Q Consensus 157 ~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~----------~~~l~~~ 224 (414)
...+++|++|+|++|.+++..+..++..||+|++|++.++.....+ ....+++|++|++.+ |..+...
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 3456667777776666665566556666777777766633211111 112346666666663 4233211
Q ss_pred -----eeeccceeeeEeeeec-ccceeeecc-ccccCceeEee----ccCCch----HHHHhhhccCCCCcEEecccccc
Q 015001 225 -----EIKTSNVNALAIHQTY-LFPIEVNVS-SCGNLKCLKFD----FLPIED----EWLCNGISKLPLLEYLSMTKCHK 289 (414)
Q Consensus 225 -----~~~~p~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~----~~~~~~----~~~~~~~~~~~~L~~L~l~~c~~ 289 (414)
...+|+|++|++..+. .......+. .+++|++|++. .+.+++ ..+..++..+++|+.|+++.|..
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 1235666666664333 111111222 25666666664 233333 23444455566666666655432
Q ss_pred -cc-----cccccccccceEEeeccCCce----EeeccCCCeeeEEEeCcee------EEeccCCccceEEEEee
Q 015001 290 -LT-----SVRISSPCLKTLILECCDKLI----QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 290 -~~-----~l~~~~~~L~~L~l~~c~~l~----~~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~ 348 (414)
+. .+...+++|+.|++++|.... .+...+++|+.|++.++.. ....++++|+.|+++.+
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 11 112235666666666654321 1123445666666666653 23344566666666655
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=134.29 Aligned_cols=228 Identities=13% Similarity=0.124 Sum_probs=170.4
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
.++++++..........|..+..+++|++|+++++.+... .....+ +|+.|++.++.+.. +. ...+++|++|.+
T Consensus 258 ~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~--~~~l~~L~~L~l 332 (570)
T 2z63_A 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FP--TLKLKSLKRLTF 332 (570)
T ss_dssp EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CC--BCBCSSCCEEEE
T ss_pred chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cC--cccccccCEEeC
Confidence 4566666654333445666777889999999999977533 445666 99999999998741 11 147899999999
Q ss_pred eccCCcceeecCCCCCCceEEEeecCCCceEe------eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchH
Q 015001 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (414)
Q Consensus 194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (414)
.+|..........+++|+.|++++| .+.... ..+++|++|+++++.....+..+..+++|++|++.++.+...
T Consensus 333 ~~n~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 411 (570)
T 2z63_A 333 TSNKGGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM 411 (570)
T ss_dssp ESCBSCCBCCCCBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC
T ss_pred cCCccccccccccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc
Confidence 9987665554466899999999998 444432 257999999999987444455588999999999999887653
Q ss_pred HHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCc-eEee---ccCCCeeeEEEeCcee-----EEec
Q 015001 268 WLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL-IQVE---IETPNLSIFKYHGDLI-----SFSS 335 (414)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l-~~~~---~~~p~L~~l~~~~~~~-----~~~~ 335 (414)
.....+..+++|+.|++++|......+ ..+++|+.|++++|... ..++ ...++|+.|.+.++.. ..+.
T Consensus 412 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp TTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 333346789999999999985443332 36889999999998754 2332 3557899999998876 3456
Q ss_pred cCCccceEEEEee
Q 015001 336 NALSLSETSLCFS 348 (414)
Q Consensus 336 ~~~~L~~L~l~~~ 348 (414)
++++|++|+++.+
T Consensus 492 ~l~~L~~L~l~~n 504 (570)
T 2z63_A 492 SLSSLQVLNMASN 504 (570)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEeCCCC
Confidence 7899999999887
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.39 E-value=7.6e-13 Score=129.01 Aligned_cols=206 Identities=19% Similarity=0.105 Sum_probs=94.0
Q ss_pred CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~ 214 (414)
+++++|+++++.+... ..+..+++|+.|+|+++.++.... ..+..+++|++|+|++|...... .+..+++|+.|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555544321 334455555555555554421111 11344555555555554322100 123345555555
Q ss_pred EeecCCCceEee----eccceeeeEeeeec-cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001 215 LVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (414)
Q Consensus 215 l~~~~~l~~~~~----~~p~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (414)
+++| .+..+.. .+++|++|+++++. ...+. ..+.++++|+.|+++++.+..- + .+..+++|+.|+++++.
T Consensus 154 L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 154 LRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--P-NLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--C-CCTTCTTCCEEECTTSC
T ss_pred CCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--c-cccccccccEEECcCCc
Confidence 5555 2333321 34555555555432 11111 1244455555555555554431 1 13445555555555542
Q ss_pred cccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001 289 KLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 289 ~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~ 349 (414)
.... ....+++|+.|++++|...... ....++|+.|.+.++.. ..+.++++|+.|+++.|+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 2111 1124455555555554332211 12234555555555543 345667888888888774
No 40
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.39 E-value=6.9e-13 Score=128.88 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=106.7
Q ss_pred CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~ 214 (414)
++++.|+++++.+... ..+..+++|++|+|+++.+..... ..+.++++|++|++++|...... .+..+++|+.|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4566666666654321 345566666666666665522111 12445666666666665332111 233456666666
Q ss_pred EeecCCCceEee----eccceeeeEeeeec-cccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001 215 LVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (414)
Q Consensus 215 l~~~~~l~~~~~----~~p~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (414)
++++ .+..+.. .+++|++|+++++. ...+. ..+.++++|++|+++++.+.. ++. +..+++|+.|+++++.
T Consensus 143 L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 143 LRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLIKLDELDLSGNH 218 (440)
T ss_dssp CCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCSSCCEEECTTSC
T ss_pred CCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCcccCEEECCCCc
Confidence 6665 3333332 34666666666533 11111 134556666666666665543 111 4455666666666652
Q ss_pred cccc---ccccccccceEEeeccCCceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001 289 KLTS---VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 289 ~~~~---l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~ 349 (414)
.... ....+++|+.|++++|...... ....++|+.|.+.++.. ..+.++++|+.|+++.|+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 2111 1124556666666665432211 12335666666666544 335567888888887774
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=1.1e-12 Score=121.27 Aligned_cols=186 Identities=20% Similarity=0.163 Sum_probs=139.6
Q ss_pred CCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEe
Q 015001 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~ 216 (414)
.+++|++|++++|.+...+....+++|++|++++|.+.+... +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 468999999999988766678889999999999998843222 78999999999999965432246678999999999
Q ss_pred ecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc-
Q 015001 217 NTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV- 293 (414)
Q Consensus 217 ~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l- 293 (414)
+| .+..+. ..+++|++|+++++....+. .+..+++|+.|+++++.+.+ +.. +..+++|+.|+++++.. ..+
T Consensus 116 ~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l-~~~~ 189 (308)
T 1h6u_A 116 ST-QITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKI-SDIS 189 (308)
T ss_dssp TS-CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCCG
T ss_pred CC-CCCCchhhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCcc-CcCh
Confidence 99 333332 26789999999998733322 27889999999999998875 222 67899999999999632 222
Q ss_pred -cccccccceEEeeccCCceEe-eccCCCeeeEEEeCcee
Q 015001 294 -RISSPCLKTLILECCDKLIQV-EIETPNLSIFKYHGDLI 331 (414)
Q Consensus 294 -~~~~~~L~~L~l~~c~~l~~~-~~~~p~L~~l~~~~~~~ 331 (414)
...+++|++|++++|...... ....++|+.+.+.++..
T Consensus 190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 247789999999988643211 23456778877777654
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=9.2e-13 Score=125.87 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=155.4
Q ss_pred hCCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCccc
Q 015001 113 ESEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 189 (414)
..+++.+++... ....+|.. +..+++|++|+++++.+... ..+..+++|++|+|+++.++... ...+..+++|+
T Consensus 44 l~~l~~l~l~~~--~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 120 (390)
T 3o6n_A 44 LNNQKIVTFKNS--TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLT 120 (390)
T ss_dssp GCCCSEEEEESC--EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred cCCceEEEecCC--chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCC
Confidence 368999998763 34467765 45689999999999977532 46788999999999999874322 22357899999
Q ss_pred EEEeeccCCcceee---cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeecc
Q 015001 190 YLEIRSCEGLESLD---LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL 262 (414)
Q Consensus 190 ~L~l~~c~~~~~l~---i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (414)
+|++++|... .+. +..+++|+.|++++| .+..+. ..+++|++|+++++..... .++.+++|+.|+++++
T Consensus 121 ~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred EEECCCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 9999998654 232 456899999999998 344332 2578999999998873322 3455666666666555
Q ss_pred CCchHHHH--------------h-hhccCCCCcEEeccccccccc-ccccccccceEEeeccCCceEee---ccCCCeee
Q 015001 263 PIEDEWLC--------------N-GISKLPLLEYLSMTKCHKLTS-VRISSPCLKTLILECCDKLIQVE---IETPNLSI 323 (414)
Q Consensus 263 ~~~~~~~~--------------~-~~~~~~~L~~L~l~~c~~~~~-l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~ 323 (414)
.+..-... . ....+++|+.|+++++..... ....+++|+.|++++|......+ ...++|+.
T Consensus 197 ~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 197 LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 44320000 0 012245677777777532211 12367889999998886543322 34578999
Q ss_pred EEEeCcee----EEeccCCccceEEEEeec
Q 015001 324 FKYHGDLI----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 324 l~~~~~~~----~~~~~~~~L~~L~l~~~~ 349 (414)
|.+.++.. .....+++|+.|+++.+.
T Consensus 277 L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp EECCSSCCCEEECSSSCCTTCCEEECCSSC
T ss_pred EECCCCcCcccCcccCCCCCCCEEECCCCc
Confidence 99888766 334567999999998883
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=6.8e-13 Score=129.35 Aligned_cols=211 Identities=15% Similarity=0.048 Sum_probs=150.1
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
++++.|++.... ...+ |..+..+++|++|++++|.+... ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus 75 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred CCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence 488888887632 2233 44567789999999999876432 45778899999999998774211 223567899999
Q ss_pred EEeeccCCccee---ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccC
Q 015001 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
|++++|... .+ .+..+++|+.|++++|..+..+.. .+++|++|+++++....+ ..+..+++|+.|+++++.
T Consensus 152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSC
T ss_pred EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCc
Confidence 999988643 22 355679999999998866666653 468899999988874333 257788899999999888
Q ss_pred CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI 331 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~ 331 (414)
+... ....+..+++|+.|+++++..... ....+++|+.|++++|... .+ ....++|+.+.+.+++.
T Consensus 230 l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 230 FPEI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CSEE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCE
T ss_pred Cccc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCc
Confidence 7652 233467789999999998633222 1236788999999888542 32 23457788888888765
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.37 E-value=6.2e-14 Score=142.56 Aligned_cols=213 Identities=13% Similarity=0.132 Sum_probs=146.9
Q ss_pred cCCccccCCCcccEEEecCcccCC-------------------CCccc--cCcccceeEeeEEEcChHHHHHHHhCCCcc
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLI 188 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 188 (414)
.+|..+..+++|++|++++|.+.. |.... .+++|++|+|++|.+... +...+.++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence 478888899999999999997753 45566 899999999999986332 22346789999
Q ss_pred cEEEeeccCCcc--ee--ecCC------CCCCceEEEeecCCCceEee-----eccceeeeEeeeeccc-ceeeeccccc
Q 015001 189 EYLEIRSCEGLE--SL--DLVN------LSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLF-PIEVNVSSCG 252 (414)
Q Consensus 189 e~L~l~~c~~~~--~l--~i~~------l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~-~~~~~~~~~~ 252 (414)
++|++++|..+. .+ .+.. +++|+.|++++| .+..++. .+++|++|+++++... .++ .++.++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999997332 22 2222 489999999999 3434432 5789999999998744 555 788899
Q ss_pred cCceeEeeccCCchHHHHhhhccCCC-CcEEecccccccccccc-----cccccceEEeeccCCceEeec----------
Q 015001 253 NLKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRI-----SSPCLKTLILECCDKLIQVEI---------- 316 (414)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~~~~l~~-----~~~~L~~L~l~~c~~l~~~~~---------- 316 (414)
+|+.|+++++.+. .++..+..+++ |+.|+++++... .++. .+++|+.|++++|......+.
T Consensus 354 ~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 354 KLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred CCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 9999999999877 34444677888 999999996422 3432 234788888877754332211
Q ss_pred cCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001 317 ETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 317 ~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
..++|+.|.+.++.. ..+.++++|+.|+++.+
T Consensus 431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 223566666555443 12223445555555443
No 45
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.36 E-value=2.2e-13 Score=137.36 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=155.2
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCccc--------------------------C------CCCccccC
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKL--------------------------Q------QPSENVKL 160 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~--------------------------~------~~~~~~~l 160 (414)
.+++++|++..+. ....+|..+..+++|++|+++.+.. . .+.....+
T Consensus 210 ~~~L~~L~L~~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTS-CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred CCCCcEEecCCCC-cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 3688888877642 1222555555667777776544321 0 00112257
Q ss_pred cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-e-cCCCCCCceEEEeec--------CCCceE-----e
Q 015001 161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-D-LVNLSNLKEIILVNT--------SDIKRV-----E 225 (414)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-~-i~~l~~L~~L~l~~~--------~~l~~~-----~ 225 (414)
++|++|++++|.+++..+..++..||+|++|.+.+|.....+ . ...+++|+.|++..| ..+... .
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 899999999998888888888899999999999988221111 1 123689999999543 222221 1
Q ss_pred eeccceeeeEeeeecccc--eeeeccccccCceeEee--c----cCCc----hHHHHhhhccCCCCcEEecccccc---c
Q 015001 226 IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFD--F----LPIE----DEWLCNGISKLPLLEYLSMTKCHK---L 290 (414)
Q Consensus 226 ~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~--~----~~~~----~~~~~~~~~~~~~L~~L~l~~c~~---~ 290 (414)
..+|+|++|.+..+.... .......+++|++|++. + +.++ +..+..++..+++|+.|++++.-. +
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~ 448 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVF 448 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHH
Confidence 247899999765544111 11112358999999998 3 4455 556777788899999999976211 1
Q ss_pred ccccccccccceEEeeccCCceE----eeccCCCeeeEEEeCcee------EEeccCCccceEEEEeecc
Q 015001 291 TSVRISSPCLKTLILECCDKLIQ----VEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 291 ~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~l~~~~~~~------~~~~~~~~L~~L~l~~~~~ 350 (414)
..+...+++|+.|++++|..... +...+|+|+.|.+.++.. .....+++|+.|+++.++.
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 11222478999999999875322 123478999999998875 3445679999999988854
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=8.8e-13 Score=128.12 Aligned_cols=212 Identities=14% Similarity=0.050 Sum_probs=124.3
Q ss_pred CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
++++.|++.... ...++ ..+..+++|++|++++|.+... ..+..+++|++|+|++|.++.-. ...+..+++|++
T Consensus 64 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence 466777666532 22222 3455677777777777765432 34566777777777777663211 112456777777
Q ss_pred EEeeccCCcce--eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccCC
Q 015001 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (414)
Q Consensus 191 L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (414)
|++++|..... ..+..+++|+.|++.+|..+..+.. .+++|++|+++++....++ .+..+++|+.|+++++.+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCcc
Confidence 77777653311 1244567777777777655555442 4577777777776633322 456677777777777766
Q ss_pred chHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee----ccCCCeeeEEEeCcee
Q 015001 265 EDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGDLI 331 (414)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~~~~~ 331 (414)
... ....+..+++|+.|+++++..... ....+++|+.|++++|... .++ ...++|+.+.+.+++.
T Consensus 220 ~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAI-RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEE-CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred Ccc-ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 542 123356677777777777532211 1225677777777776432 221 2346677777766654
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=1.1e-13 Score=135.25 Aligned_cols=266 Identities=14% Similarity=0.136 Sum_probs=175.9
Q ss_pred HHhCCCeEEEEEecCCccc---cCCccccCCCcccEEEecCcccCCC---CccccCc----ccceeEeeEEEcCh---HH
Q 015001 111 AIESEVKELVLVHWRSERR---NLPEIIFYVESLHVLELSYCKLQQP---SENVKLF----SLRKLALREVCADD---QA 177 (414)
Q Consensus 111 ~~~~~l~~L~l~~~~~~~~---~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~----~L~~L~L~~~~~~~---~~ 177 (414)
...+++++|++..+..... .++..+..+++|++|++++|.+... .....++ +|++|+|++|.+++ ..
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4457999999998643322 5666777889999999999876432 1122344 79999999999865 35
Q ss_pred HHHHHhCCCcccEEEeeccCCcce----e--e-cCCCCCCceEEEeecCCCceEe--------eeccceeeeEeeeeccc
Q 015001 178 IASLISGCPLIEYLEIRSCEGLES----L--D-LVNLSNLKEIILVNTSDIKRVE--------IKTSNVNALAIHQTYLF 242 (414)
Q Consensus 178 l~~ll~~~p~Le~L~l~~c~~~~~----l--~-i~~l~~L~~L~l~~~~~l~~~~--------~~~p~L~~L~l~~~~~~ 242 (414)
+...+..+++|++|++++|..... + . ....++|++|++++| .+.... ..+++|++|+++++...
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 566688999999999999864311 1 1 122468999999999 333211 14689999999988722
Q ss_pred ce-eeecc-----ccccCceeEeeccCCchHH---HHhhhccCCCCcEEecccccccc----cc----cccccccceEEe
Q 015001 243 PI-EVNVS-----SCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SV----RISSPCLKTLIL 305 (414)
Q Consensus 243 ~~-~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~----~l----~~~~~~L~~L~l 305 (414)
.. ...+. ..++|++|+++++.+.... +...+..+++|++|+++++.... .+ ...+++|++|++
T Consensus 184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L 263 (461)
T 1z7x_W 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263 (461)
T ss_dssp HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEEC
Confidence 11 11111 3569999999999988753 55566789999999999973211 11 124789999999
Q ss_pred eccCCceE----ee---ccCCCeeeEEEeCcee----------EEeccCCccceEEEEeecchhhhHHHHHHHHHHHHhh
Q 015001 306 ECCDKLIQ----VE---IETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMF 368 (414)
Q Consensus 306 ~~c~~l~~----~~---~~~p~L~~l~~~~~~~----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 368 (414)
++|..... +. ...++|++|.+.++.. ....+.++|++|+++.+.........+..... .
T Consensus 264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~----~ 339 (461)
T 1z7x_W 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA----Q 339 (461)
T ss_dssp TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH----H
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh----h
Confidence 99854321 21 2368899999988765 11123379999999877433333333333222 1
Q ss_pred hhcceeeEEeeec
Q 015001 369 QKFSKVLNLQCRE 381 (414)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (414)
....+.+++.+++
T Consensus 340 ~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 340 NRFLLELQISNNR 352 (461)
T ss_dssp CSSCCEEECCSSB
T ss_pred CCCccEEEccCCc
Confidence 2334556666654
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=2e-13 Score=133.28 Aligned_cols=217 Identities=16% Similarity=0.089 Sum_probs=102.0
Q ss_pred CccccCCCcccEEEecCcccCCC--C-----ccccCcccceeEeeEEEcChH---HHHHHHhCCCcccEEEeeccCCcce
Q 015001 132 PEIIFYVESLHVLELSYCKLQQP--S-----ENVKLFSLRKLALREVCADDQ---AIASLISGCPLIEYLEIRSCEGLES 201 (414)
Q Consensus 132 p~~~~~~~~L~~L~L~~~~~~~~--~-----~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~~p~Le~L~l~~c~~~~~ 201 (414)
+..+..+++|++|++++|.+... . .....++|++|++++|.+++. .+...+..+++|++|++++|.....
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 34444455555555555543211 0 011233455555555554332 2233344555666666655542110
Q ss_pred -e-ecC-----CCCCCceEEEeecCCCce-----Ee---eeccceeeeEeeeecccce------eeeccccccCceeEee
Q 015001 202 -L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI------EVNVSSCGNLKCLKFD 260 (414)
Q Consensus 202 -l-~i~-----~l~~L~~L~l~~~~~l~~-----~~---~~~p~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~ 260 (414)
. .+. ..++|+.|++++| .+.. +. ..+++|++|+++++..... ......+++|++|+++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 0 000 1246666666665 2221 11 1346666666666541110 0111235666667766
Q ss_pred ccCCchHH---HHhhhccCCCCcEEecccccccc----ccc----ccccccceEEeeccCCceE----e---eccCCCee
Q 015001 261 FLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVR----ISSPCLKTLILECCDKLIQ----V---EIETPNLS 322 (414)
Q Consensus 261 ~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~~~----~l~----~~~~~L~~L~l~~c~~l~~----~---~~~~p~L~ 322 (414)
++.+.... +...+..+++|++|+++++.... .+. ...++|++|++++|..... + ....++|+
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 344 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLL 344 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCC
T ss_pred CCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCcc
Confidence 66666543 33344556667777776652111 111 1224677777776653221 1 11336677
Q ss_pred eEEEeCcee-----EE----ec-cCCccceEEEEeec
Q 015001 323 IFKYHGDLI-----SF----SS-NALSLSETSLCFSS 349 (414)
Q Consensus 323 ~l~~~~~~~-----~~----~~-~~~~L~~L~l~~~~ 349 (414)
.+.+.++.. .. +. ..++|++|+++.+.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 777766644 11 11 14577777776663
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.34 E-value=2.6e-12 Score=134.94 Aligned_cols=96 Identities=11% Similarity=-0.065 Sum_probs=54.3
Q ss_pred ccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceE---eeccCCCeeeEE
Q 015001 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQ---VEIETPNLSIFK 325 (414)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~---~~~~~p~L~~l~ 325 (414)
++|+.|+++++.+... ....+..+++|+.|+++++..... ....+++|+.|++++|..... .....++|+.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 4555555555554321 122345566666666666422211 122456777777777653221 123446777777
Q ss_pred EeCcee-----EEeccCCccceEEEEee
Q 015001 326 YHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 326 ~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
+.++.. ..+.++++|+.|+++.+
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 776654 34667788888888877
No 50
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.34 E-value=6.5e-13 Score=138.31 Aligned_cols=81 Identities=14% Similarity=0.055 Sum_probs=60.8
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCc-ccE
Q 015001 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPL-IEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~-Le~ 190 (414)
+++++|++..+.-. .+|. .+..+++|+.|++++|.+...+.+..+++|+.|+|++|.+. .+...+..+++ |+.
T Consensus 548 ~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 548 PKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCE
T ss_pred CCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCE
Confidence 48888888764433 7888 78888999999999987763356778888999999888774 23333567777 888
Q ss_pred EEeeccCC
Q 015001 191 LEIRSCEG 198 (414)
Q Consensus 191 L~l~~c~~ 198 (414)
|++++|..
T Consensus 624 L~Ls~N~L 631 (876)
T 4ecn_A 624 LGFSHNKL 631 (876)
T ss_dssp EECCSSCC
T ss_pred EECcCCCC
Confidence 88888754
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.33 E-value=2e-12 Score=130.49 Aligned_cols=102 Identities=14% Similarity=0.033 Sum_probs=75.2
Q ss_pred eccceeeeEeeeecccc-eeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccce
Q 015001 227 KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKT 302 (414)
Q Consensus 227 ~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~ 302 (414)
.+++|++|+++++.... .+..++.+++|+.|+++++.+.. ++.....+|+|+.|+++++... .++ ..+++|+.
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~ 328 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCE
Confidence 46788888888877322 24567889999999999998765 3334466899999999997432 333 36789999
Q ss_pred EEeeccCCceEeeccCCCeeeEEEeCcee
Q 015001 303 LILECCDKLIQVEIETPNLSIFKYHGDLI 331 (414)
Q Consensus 303 L~l~~c~~l~~~~~~~p~L~~l~~~~~~~ 331 (414)
|++++|.....-....++|+.+.+.+++.
T Consensus 329 L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 329 LYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp EECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred EECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 99999875432234567899999988775
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=2e-12 Score=134.73 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=105.6
Q ss_pred hCCCeEEEEEecCCccc----------------cCCcccc--CCCcccEEEecCcccC--CCCccccCcccceeEeeEEE
Q 015001 113 ESEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVC 172 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~ 172 (414)
.+++++|+++...-... .+|..+. .+++|++|++++|.+. .|..+..+++|+.|+|++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 35899999987432221 2888877 8999999999998753 33567889999999999997
Q ss_pred -cChHHHHHH-------HhCCCcccEEEeeccCCccee----ecCCCCCCceEEEeecCCCceEe--eeccceeeeEeee
Q 015001 173 -ADDQAIASL-------ISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQ 238 (414)
Q Consensus 173 -~~~~~l~~l-------l~~~p~Le~L~l~~c~~~~~l----~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~ 238 (414)
++...+..- +..+|+|+.|++++|... .+ .+..+++|+.|++++| .+..++ ..+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCCcceEEECcC
Confidence 654122221 235669999999988654 33 3566788888888887 233332 2467788888887
Q ss_pred ecccceeeecccccc-CceeEeeccCCc
Q 015001 239 TYLFPIEVNVSSCGN-LKCLKFDFLPIE 265 (414)
Q Consensus 239 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (414)
+....++..+..+++ |+.|+++++.+.
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred CccccchHHHhhccccCCEEECcCCCCC
Confidence 764445555667777 777777777655
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.32 E-value=2.4e-12 Score=117.46 Aligned_cols=201 Identities=16% Similarity=0.080 Sum_probs=121.6
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--- 202 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--- 202 (414)
...+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++... ...+..+++|++|++++|..+..+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~ 99 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPA 99 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHH
Confidence 33455433 36888888888876532 34677888888888887764221 123567888888888888644333
Q ss_pred ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCC
Q 015001 203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (414)
Q Consensus 203 ~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (414)
.+..+++|+.|++++| .+..+. ..+++|++|+++++....+.. .++.+++|++|+++++.+... ....+..++
T Consensus 100 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 177 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLH 177 (285)
T ss_dssp TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT
T ss_pred HhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCcc
Confidence 3455788888888887 333321 245777777777766332222 256677777777777766531 112245567
Q ss_pred CCcEEeccccccccccc---ccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001 278 LLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349 (414)
Q Consensus 278 ~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 349 (414)
+|+.|+++++......+ ..+++|+.|++++|.... + ....+.++++|+.|+++.++
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~---------------~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-L---------------PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-C---------------CHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-C---------------CHHHcccCcccCEEeccCCC
Confidence 77777777753222211 245666777666653221 1 00235567788888887773
No 54
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.32 E-value=2.6e-13 Score=129.51 Aligned_cols=195 Identities=20% Similarity=0.197 Sum_probs=105.9
Q ss_pred CCCeEEEEEecCCcc---ccCCccccCCCcccEEEecCcccCCC-----Cc-------cccCcccceeEeeEEEcChH--
Q 015001 114 SEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ-- 176 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-----~~-------~~~l~~L~~L~L~~~~~~~~-- 176 (414)
+++++|++..+.... ..++..+..+++|++|++++|.+... .. ...+++|++|+|++|.++..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 577777776532111 12333455677778887777643211 11 24667777777777777443
Q ss_pred -HHHHHHhCCCcccEEEeeccCCcce----e--ecCCC---------CCCceEEEeecCCCc--eEe------eecccee
Q 015001 177 -AIASLISGCPLIEYLEIRSCEGLES----L--DLVNL---------SNLKEIILVNTSDIK--RVE------IKTSNVN 232 (414)
Q Consensus 177 -~l~~ll~~~p~Le~L~l~~c~~~~~----l--~i~~l---------~~L~~L~l~~~~~l~--~~~------~~~p~L~ 232 (414)
.+...+..+++|++|++++|..... + .+..+ ++|+.|++++| .+. .+. ..+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcC
Confidence 3444566777777777777754210 0 01112 67777777776 222 111 1355677
Q ss_pred eeEeeeecccc------eeeeccccccCceeEeeccCCch---HHHHhhhccCCCCcEEeccccccccc----ccc----
Q 015001 233 ALAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIED---EWLCNGISKLPLLEYLSMTKCHKLTS----VRI---- 295 (414)
Q Consensus 233 ~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~~~~----l~~---- 295 (414)
+|+++++.... .+..+..+++|+.|+++++.+.+ ..+...+..+++|+.|++++|..... ++.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77776665220 11144566677777777666653 22344455666777777776532111 111
Q ss_pred -cccccceEEeeccC
Q 015001 296 -SSPCLKTLILECCD 309 (414)
Q Consensus 296 -~~~~L~~L~l~~c~ 309 (414)
.+++|++|++++|.
T Consensus 271 ~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 271 LENIGLQTLRLQYNE 285 (386)
T ss_dssp CSSCCCCEEECCSSC
T ss_pred ccCCCeEEEECcCCc
Confidence 15666666666654
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=1.4e-11 Score=120.04 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=70.6
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~ 218 (414)
++|++|++++|.+...+.+..+++|++|+++++.++. +. ...++|++|++++|....--.+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4566666666655433345566666666666665421 11 122466666666654322113445566666666666
Q ss_pred CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
.+..++...++|++|+++++....++ .++.+++|++|+++++.+.. + ....++|+.|+++++
T Consensus 206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT--L---PDLPPSLEALNVRDN 267 (454)
T ss_dssp -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEECCSS
T ss_pred -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc--c---cccccccCEEECCCC
Confidence 33333333356666666665533333 35566666666666655543 1 112345555555553
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=2.7e-12 Score=126.18 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=144.2
Q ss_pred CCCeeeEEEEEecCCCCCChhhHHHHHHHHHhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCc
Q 015001 82 MISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLF 161 (414)
Q Consensus 82 ~~~l~~l~l~~~~~~~~~~~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~ 161 (414)
...++.+.+....... .....+ ...++++.|+++.+.. ...++ +..+++|++|++++|.+.. ....+
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~------~~l~~L~~L~Ls~N~l--~~~~~-l~~l~~L~~L~Ls~N~l~~---l~~~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADL------APFTKLELLNLSSNVL--YETLD-LESLSTLRTLDLNNNYVQE---LLVGP 99 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGG------TTCTTCCEEECTTSCC--EEEEE-CTTCTTCCEEECCSSEEEE---EEECT
T ss_pred CCCccEEEeeCCcCCC-CCHHHH------hCCCCCCEEEeeCCCC--CCCcc-cccCCCCCEEEecCCcCCC---CCCCC
Confidence 4478887776543221 111111 2236899999876432 22333 7778999999999998763 23448
Q ss_pred ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCceEEEeecCCCceEee-----eccceeee
Q 015001 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNAL 234 (414)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L 234 (414)
+|++|++++|.++... ...+++|+.|++++|.... ...+..+++|+.|++++| .+..+.. .+++|++|
T Consensus 100 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 100 SIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp TCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred CcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEE
Confidence 9999999999884322 2357999999999986543 234566799999999998 4444321 46899999
Q ss_pred EeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCc
Q 015001 235 AIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKL 311 (414)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l 311 (414)
+++++....+ .....+++|+.|+++++.+.+ ++..+..+++|+.|+++++.. ..++ ..+++|+.|++++|...
T Consensus 175 ~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 175 NLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp ECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCBC
T ss_pred ecCCCccccc-cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcC-cccchhhccCCCCCEEEcCCCCCc
Confidence 9999874333 334568999999999998875 222366789999999999632 2333 35688999999887654
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=1.5e-12 Score=121.55 Aligned_cols=225 Identities=15% Similarity=0.117 Sum_probs=115.6
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
+++++|++..+. ...+ |..+..+++|++|++++|.+...+.. .+++|++|+++++.+..- ....+..+++|++|+
T Consensus 78 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred CCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCcCCccCcc-ccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence 466666665422 1122 34455566666777666655432111 126666676666655311 112245667777777
Q ss_pred eeccCCcc----eeecCCCCCCceEEEeecCCCceEee-eccceeeeEeeeeccccee-eeccccccCceeEeeccCCch
Q 015001 193 IRSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 193 l~~c~~~~----~l~i~~l~~L~~L~l~~~~~l~~~~~-~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~ 266 (414)
+++|.... .-.+..+ +|+.|++++| .+..++. ..++|++|+++++...... ..+..+++|+.|+++++.+..
T Consensus 154 l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 154 MGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 76664421 1122232 6666666666 2332322 1256777777766522222 345667777777777776654
Q ss_pred HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCCceEee----------ccCCCeeeEEEeCcee--
Q 015001 267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVE----------IETPNLSIFKYHGDLI-- 331 (414)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~----------~~~p~L~~l~~~~~~~-- 331 (414)
.. ...+..+++|+.|+++++. +..++ ..+++|+.|++++|... .+. ...++|+.+.+.+++.
T Consensus 232 ~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 232 IE-NGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CC-TTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CC-hhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCC-ccChhHccccccccccccccceEeecCcccc
Confidence 21 1234567777777777752 22332 25667777777766432 111 0123455566555543
Q ss_pred -----EEeccCCccceEEEEe
Q 015001 332 -----SFSSNALSLSETSLCF 347 (414)
Q Consensus 332 -----~~~~~~~~L~~L~l~~ 347 (414)
..+..++.|+.++++.
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC--
T ss_pred cccCcccccccchhhhhhccc
Confidence 2344455566655543
No 58
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=3.7e-12 Score=116.61 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=93.2
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+. ...++ .+..+++|++|++++|.+........+++|+.|+++++.++. +.. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~~--i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCC--cccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence 467777765532 22333 255677777777777776554446677777777777776633 111 566777777777
Q ss_pred eccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (414)
Q Consensus 194 ~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (414)
++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++....... +..+++|+.|+++++.+.+ +..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~--l~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD--LRA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB--CGG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC--Chh
Confidence 7764432223445667777777766 222222 145566666666655222211 5556666666666665544 122
Q ss_pred hhccCCCCcEEecccc
Q 015001 272 GISKLPLLEYLSMTKC 287 (414)
Q Consensus 272 ~~~~~~~L~~L~l~~c 287 (414)
+..+++|+.|+++++
T Consensus 196 -l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCSEEEEEEE
T ss_pred -hccCCCCCEEECcCC
Confidence 455566666666653
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.29 E-value=2e-12 Score=117.95 Aligned_cols=192 Identities=15% Similarity=0.101 Sum_probs=129.8
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCC--CCccccCcccceeEeeEEE-cChHHHHHHHhCCCccc
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE 189 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le 189 (414)
+++++|++.... ...++. .+..+++|++|+++++.+.. +..+..+++|++|+++++. +.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 478888776532 223443 46678899999999886643 2456778899999998886 42211 22356788999
Q ss_pred EEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeecc
Q 015001 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (414)
Q Consensus 190 ~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (414)
+|++++|...... .+..+++|+.|++++| .+..+. ..+++|++|+++++....+.. .+..+++|++|+++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 9999888654321 2556788999999888 333333 246889999998876333333 3677889999999988
Q ss_pred CCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeeccCC
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDK 310 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~c~~ 310 (414)
.+.... ...+..+++|+.|+++++...... ...+++|+.|++++|..
T Consensus 188 ~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 188 RVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccC-HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 876532 334667889999999986322211 23577888888887643
No 60
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.29 E-value=3.1e-12 Score=127.74 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=29.5
Q ss_pred ccccccCceeEeeccCCchHH-HHhhhccCCCCcEEecccccccccccc---cccccceEEeeccC
Q 015001 248 VSSCGNLKCLKFDFLPIEDEW-LCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (414)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~ 309 (414)
++.+++|+.|+++++.+..-. ....+..+++|+.|+++++. +..++. .+++|+.|++++|.
T Consensus 357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC
T ss_pred hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC
Confidence 344555566666555554322 12234556666666666642 222221 34455555555543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.29 E-value=4.2e-12 Score=117.76 Aligned_cols=182 Identities=13% Similarity=0.082 Sum_probs=93.3
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|+++.+.. ...++ +..+++|++|++++|.+.. ....++|++|+++++.++... ...+++|++|++
T Consensus 58 ~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l 127 (317)
T 3o53_A 58 TKLELLNLSSNVL--YETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHAANNNISRVS----CSRGQGKKNIYL 127 (317)
T ss_dssp TTCCEEECTTSCC--EEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEECCSSCCSEEE----ECCCSSCEEEEC
T ss_pred CcCCEEECCCCcC--Ccchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEECCCCccCCcC----ccccCCCCEEEC
Confidence 4666666654221 11222 4556666666666665542 223366666666666553221 123566666666
Q ss_pred eccCCcc--eeecCCCCCCceEEEeecCCCceEee-----eccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001 194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 194 ~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (414)
++|.... ...+..+++|+.|++++| .+..+.. .+++|++|+++++....+ .....+++|++|+++++.+..
T Consensus 128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 128 ANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp CSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc
Confidence 6664332 123334566666666666 3333321 246666666666652222 122346666666666666553
Q ss_pred HHHHhhhccCCCCcEEeccccccccccc---ccccccceEEeeccCC
Q 015001 267 EWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDK 310 (414)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~ 310 (414)
+...+..+++|+.|+++++. +..++ ..+++|+.|++++|..
T Consensus 206 --l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 206 --MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp --ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCC
T ss_pred --chhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCc
Confidence 11124455666666666642 22222 2445666666665543
No 62
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.28 E-value=8.5e-12 Score=116.31 Aligned_cols=207 Identities=16% Similarity=0.128 Sum_probs=103.0
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
++++.|++.... ...++. .+..+++|++|++++|.+... ..+..+++|++|+++++.++. +. ....++|++
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCE
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccccE
Confidence 356666555422 223333 345566666666666655322 345556666666666665421 10 011256666
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCce--E----eeeccceeeeEeeeecccceeeeccccccCceeEeecc
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--V----EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL 262 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~--~----~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (414)
|++++|...... .+..+++|+.|++++| .+.. + ...+++|++|+++++....++..+ .++|++|+++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n 202 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGN 202 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTS
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCCC
Confidence 666665432211 2344566666666665 1211 1 113566666666665522222211 256677777666
Q ss_pred CCchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee
Q 015001 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI 331 (414)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~ 331 (414)
.+.... ...+..+++|+.|+++++..... ....+++|+.|++++|... .++ ...++|+.+.+.++..
T Consensus 203 ~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 203 KITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred cCCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 654421 12345566777777766532111 1224566777777666332 222 2334566666655544
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.28 E-value=3.7e-12 Score=126.41 Aligned_cols=171 Identities=16% Similarity=0.223 Sum_probs=90.1
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
+++++|+++.+. ...+ |..+..+++|++|++++|.+...+.. .+++|++|+|++|.++...+...+..+++|++|+
T Consensus 45 ~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~ 121 (520)
T 2z7x_B 45 SKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG 121 (520)
T ss_dssp TTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE
T ss_pred ccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEE
Confidence 466666665432 1222 34455566667777766655432222 5666666666666653322222345666666666
Q ss_pred eeccCCcceeecCCCCCC--ceEEEeecCC---------Cce------------------E---e-eeccceeeeEeeee
Q 015001 193 IRSCEGLESLDLVNLSNL--KEIILVNTSD---------IKR------------------V---E-IKTSNVNALAIHQT 239 (414)
Q Consensus 193 l~~c~~~~~l~i~~l~~L--~~L~l~~~~~---------l~~------------------~---~-~~~p~L~~L~l~~~ 239 (414)
+++|.... ..+..+++| +.|++.+|.- +.. + . ..+++|+.++++++
T Consensus 122 L~~n~l~~-~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 200 (520)
T 2z7x_B 122 LSTTHLEK-SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV 200 (520)
T ss_dssp EEESSCCG-GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC
T ss_pred ecCcccch-hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc
Confidence 66664322 233344555 6666666521 000 0 0 13567777777765
Q ss_pred c-------ccceeeeccccccCceeEeeccCCchHHHHhhhc--cCCCCcEEeccccc
Q 015001 240 Y-------LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS--KLPLLEYLSMTKCH 288 (414)
Q Consensus 240 ~-------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~ 288 (414)
. .......++.+++|+.|++.++.+.+..+..+.. ..++|+.|++++|.
T Consensus 201 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 201 LEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred ccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 2 1111114566777777777777766654443322 23567777777653
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=7.3e-13 Score=122.18 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=141.6
Q ss_pred CCCeEEEEEecCCccccCCcc-ccCCCcccEEEecCcccCCC----CccccCcccceeEeeEEEcChHHHHHHHhCCCcc
Q 015001 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI 188 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~L 188 (414)
+++++|++.... ...+|.. +..+++|++|++++|.+... .....+++|++|+++++.+.. +...+..+++|
T Consensus 28 ~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 478888876533 3356665 45678899999998876422 334567889999998876631 11125678899
Q ss_pred cEEEeeccCCcce---eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeeccc--ceeeeccccccCceeEe
Q 015001 189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF 259 (414)
Q Consensus 189 e~L~l~~c~~~~~---l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l 259 (414)
++|++++|..... -.+..+++|+.|++++| .+.... ..+++|++|+++++... ..+..+..+++|++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 9999888743321 13455788999999887 333222 24688999999887632 24556788899999999
Q ss_pred eccCCchHHHHhhhccCCCCcEEecccccccc--c-ccccccccceEEeeccCCceEee---ccC-CCeeeEEEeCcee
Q 015001 260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT--S-VRISSPCLKTLILECCDKLIQVE---IET-PNLSIFKYHGDLI 331 (414)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~--~-l~~~~~~L~~L~l~~c~~l~~~~---~~~-p~L~~l~~~~~~~ 331 (414)
+++.+.... ...+..+++|+.|+++++.... . ....+++|+.|++++|......+ ... ++|+.+.+.+++.
T Consensus 183 s~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 183 SQCQLEQLS-PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TTSCCCEEC-TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcCCcC-HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 988876521 2345678899999999863222 1 12357889999999886543221 233 3788888887754
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.28 E-value=1.5e-12 Score=120.43 Aligned_cols=195 Identities=16% Similarity=0.082 Sum_probs=108.6
Q ss_pred CCCcccEEEecCcccCC--CCcc--ccCcccceeEeeEEEcChH--HHHHHHh-CCCcccEEEeeccCCccee--ecCCC
Q 015001 137 YVESLHVLELSYCKLQQ--PSEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL 207 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~~p~Le~L~l~~c~~~~~l--~i~~l 207 (414)
.+++|++|++++|.+.. +... ..+++|++|+|+++.++.. .+..+.. .+++|++|++++|...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 57888888888887753 2332 6788888888888887432 2222111 1378888888877543211 23345
Q ss_pred CCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCch--HHHHhhhccCCCCcEEecc
Q 015001 208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT 285 (414)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 285 (414)
++|+.|++++|.-...+. .+....+..+++|++|+++++.+.. .....+...+++|+.|+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 666666666552110000 0001122556677777777666653 2233344556777777777
Q ss_pred cccccccc----cccccccceEEeeccCCceEeeccC-CCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001 286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (414)
Q Consensus 286 ~c~~~~~l----~~~~~~L~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~ 348 (414)
++...... ...+++|+.|++++|... +++... ++|+.|.+.++.. ..+..+++|+.|+++.+
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGN 306 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTTC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccCC
Confidence 65322211 123467777777766432 332222 4666666666554 23556777888877665
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.27 E-value=3.8e-12 Score=117.61 Aligned_cols=201 Identities=17% Similarity=0.206 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHhCCCeEEEEEecCCccccCCccc--cCCCcccEEEecCcccCCC------CccccCcccceeEeeEEE
Q 015001 101 ASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC 172 (414)
Q Consensus 101 ~~~i~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~ 172 (414)
...+.........+++++|++..+.. ....|..+ ..+++|++|++++|.+... .....+++|++|+|++|.
T Consensus 78 ~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 78 AQLLVGALRVLAYSRLKELTLEDLKI-TGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCC-BSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHHHhcccCceeEEEeeCCEe-ccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 44555555555556777777765321 12333333 5566777777777665431 112346667777776666
Q ss_pred cChHHHHHHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeecCCCceEe-------eeccceeeeEeeee
Q 015001 173 ADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKRVE-------IKTSNVNALAIHQT 239 (414)
Q Consensus 173 ~~~~~l~~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~~~l~~~~-------~~~p~L~~L~l~~~ 239 (414)
+.... ...+..+++|++|++++|..... ..+..+++|+.|++++| .+..+. ..+++|++|+++++
T Consensus 157 l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 157 SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 52211 11244566666666666653211 11234566666666666 232211 12355566665555
Q ss_pred cccce-eeecccc---ccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc-cccccccccceEEeecc
Q 015001 240 YLFPI-EVNVSSC---GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-SVRISSPCLKTLILECC 308 (414)
Q Consensus 240 ~~~~~-~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~l~~~~~~L~~L~l~~c 308 (414)
..... +..+..+ ++|++|+++++.+.. ++.. -+++|+.|+++++.... .....+++|+.|+++++
T Consensus 235 ~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~--~~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 235 SLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKG--LPAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSC--CCSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhh--hcCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 42211 2222232 455555555555441 1111 12455555555532111 11234445555555444
No 67
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.26 E-value=5e-11 Score=118.95 Aligned_cols=193 Identities=18% Similarity=0.113 Sum_probs=133.7
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
+++++|++...... ...|..+..+++|++|++++|.+... ..+..+++|++|+|+++.++.... ..+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEE
Confidence 47888888764321 22345677889999999999977532 457889999999999998843332 236789999999
Q ss_pred EeeccCCcc-e--eecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecc-cceeeeccccccCceeEeeccC
Q 015001 192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 192 ~l~~c~~~~-~--l~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
++++|.... . -.+..+++|+.|++++|..+..+.. .+++|++|+++++.. ...+..++.+++|++|++.++.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999986542 1 2356689999999999854555542 578899999998772 2234457778899999998877
Q ss_pred CchHHHHhhhccCCCCcEEecccccccc------cccccccccceEEeeccC
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCD 309 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~------~l~~~~~~L~~L~l~~c~ 309 (414)
+... .......+++|+.|+++++.... .+...+++|+.|+++++.
T Consensus 184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 6432 22234568889999998863222 112245667777766653
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.26 E-value=1.4e-12 Score=118.26 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=118.5
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
.++++++++.... ...+ ..+..+++|++|++++|.+........+++|++|++++|.++.. ....+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSD--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSC--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCC--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 4577777776532 1222 23666788888888888776656677788888888888776321 122356778888888
Q ss_pred eeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCc
Q 015001 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE 265 (414)
Q Consensus 193 l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 265 (414)
+++|...... .+..+++|+.|++++| .+..+. ..+++|++|+++++....+.. .++.+++|++|+++++.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 8887543221 2455678888888877 333333 245777888877776322222 2466777888888777765
Q ss_pred hHHHHhhhccCCCCcEEecccccccccccccccccceEEeeccCCceEe
Q 015001 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~ 314 (414)
+. ....+..+++|+.|+++++.. ...+++|+.|.++.+...+.+
T Consensus 195 ~~-~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 195 SV-PDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CC-CTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHHHHTGGGB
T ss_pred cc-CHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHHHhCCCcc
Confidence 42 223356677777777777522 223556666665555443333
No 69
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.26 E-value=1.1e-11 Score=124.09 Aligned_cols=122 Identities=14% Similarity=0.048 Sum_probs=68.7
Q ss_pred eccceeeeEeeeec-ccceeeeccccccCceeEeeccCCchH-HHHhhhccCCCCcEEeccccccccccc----cccccc
Q 015001 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDE-WLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCL 300 (414)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L 300 (414)
.+++|++|+++++. ....+..++++++|+.|+++++.+..- ..+..+..+++|+.|+++++.....++ ..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45677777777765 222334566778888888887777642 334446677888888888764322122 244666
Q ss_pred ceEEeeccCCceEeeccC-CCeeeEEEeCcee----EEeccCCccceEEEEee
Q 015001 301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 301 ~~L~l~~c~~l~~~~~~~-p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~~ 348 (414)
+.|++++|...+..+... ++|+.|.+.++.. ..+.++++|+.|+++.+
T Consensus 431 ~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS
T ss_pred CEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCC
Confidence 666666665433333233 3555655555543 11224455555555544
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.26 E-value=6.2e-12 Score=132.02 Aligned_cols=231 Identities=16% Similarity=0.095 Sum_probs=122.7
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
.++++|++..+... ...|..+..+++|+.|++++|.+... ..+..+++|++|+|++|.++... ...+..+++|+.|
T Consensus 266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEE
T ss_pred CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEE
Confidence 46666666542211 11234455567777777777765422 44566777777777777663211 1124567777777
Q ss_pred EeeccCCcc--eeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceee----------------------e
Q 015001 192 EIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----------------------N 247 (414)
Q Consensus 192 ~l~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~----------------------~ 247 (414)
++++|.... .-.+..+++|+.|++++| .+..+.. .|+|+++.++++....++. .
T Consensus 344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~ 421 (844)
T 3j0a_A 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYF 421 (844)
T ss_dssp ECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHH
T ss_pred ECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhh
Confidence 777764321 112445677777777776 3332222 5566666666554221110 1
Q ss_pred ccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc-----c---cccccccccceEEeeccCCceEe---ec
Q 015001 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL-----T---SVRISSPCLKTLILECCDKLIQV---EI 316 (414)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~-----~---~l~~~~~~L~~L~l~~c~~l~~~---~~ 316 (414)
+..+++|+.|+++++.+...........+++|+.|+++++... . .....+++|+.|++++|...... ..
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred hhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHcc
Confidence 2245555555555555443111112233455666665553211 0 11124466666776665322111 13
Q ss_pred cCCCeeeEEEeCcee---EEeccCCccceEEEEee
Q 015001 317 ETPNLSIFKYHGDLI---SFSSNALSLSETSLCFS 348 (414)
Q Consensus 317 ~~p~L~~l~~~~~~~---~~~~~~~~L~~L~l~~~ 348 (414)
..++|+.|.+.++.. ......++|+.|+++.|
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEE
T ss_pred chhhhheeECCCCCCCccChhhhhccccEEECCCC
Confidence 457788888888765 11111278999999887
No 71
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=7.5e-12 Score=117.85 Aligned_cols=212 Identities=19% Similarity=0.166 Sum_probs=109.6
Q ss_pred CCCeEEEEEecCCccccC-CccccCCCcccEEEecCcccCCCC--ccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++..+. ...+ |..+..+++|++|++++|.+...+ .+..+++|++|+++++.+..-.....+..+++|++
T Consensus 76 ~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~ 153 (353)
T 2z80_A 76 VNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcE
Confidence 477777775432 2223 334556677777777777665432 25567777777777776632111013456777777
Q ss_pred EEeeccCCccee---ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeecc
Q 015001 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (414)
Q Consensus 191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (414)
|++++|.....+ .+..+++|+.|++++| .+..+. ..+++|++|+++++....++. .+..+++|+.|+++++
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 777777544433 3445677777777776 333331 135667777776665222211 1234567777777666
Q ss_pred CCchHHHHh--hhccCCCCcEEecccccccc----cc---cccccccceEEeeccCCceEee----ccCCCeeeEEEeCc
Q 015001 263 PIEDEWLCN--GISKLPLLEYLSMTKCHKLT----SV---RISSPCLKTLILECCDKLIQVE----IETPNLSIFKYHGD 329 (414)
Q Consensus 263 ~~~~~~~~~--~~~~~~~L~~L~l~~c~~~~----~l---~~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~l~~~~~ 329 (414)
.+....... .....+.++.++++.+.... .+ ...+++|+.|++++|... .++ ...++|+.+.+.++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCC
Confidence 654311100 11234445555555431111 11 124455666666555322 222 13345555555554
No 72
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.24 E-value=7.9e-12 Score=107.49 Aligned_cols=145 Identities=19% Similarity=0.235 Sum_probs=77.7
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..... ..+| .+..+++|++|++++|.+...+....+++|++|+++++.++...... +..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred CCccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence 4677777765322 2444 45566777777777776555455666677777777766654322222 455666666666
Q ss_pred eccCCcc--eeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001 194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (414)
Q Consensus 194 ~~c~~~~--~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (414)
++|.... .-.+..+++|+.|++++|..+..+ + .+..+++|+.|+++++.+.+- .
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--------------------~-~l~~l~~L~~L~l~~n~i~~~--~- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--------------------M-PLKTLPELKSLNIQFDGVHDY--R- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--------------------G-GGGGCSSCCEEECTTBCCCCC--T-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--------------------H-hhcCCCCCCEEECCCCCCcCh--H-
Confidence 6664432 112444556666666655212222 1 344455555555555554431 1
Q ss_pred hhccCCCCcEEeccc
Q 015001 272 GISKLPLLEYLSMTK 286 (414)
Q Consensus 272 ~~~~~~~L~~L~l~~ 286 (414)
.+..+++|+.|++++
T Consensus 176 ~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TGGGCSSCCEEEECB
T ss_pred HhccCCCCCEEEeeC
Confidence 244455555555554
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=9.4e-12 Score=125.08 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=124.0
Q ss_pred HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
...+|++|++..+. ...+| .+..+++|+.|+|++|.+........+++|+.|+|++|.+..- . .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~--i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSD--IKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCC--CCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEE
T ss_pred cCCCCCEEECcCCC--CCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEE
Confidence 34688888876533 23344 4777899999999999887665588899999999999988432 1 36789999999
Q ss_pred EeeccCCcceeecCCCCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHH
Q 015001 192 EIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL 269 (414)
Q Consensus 192 ~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (414)
+|++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++....... +..+++|+.|+|++|.+.+-
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred EecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 999986543324566899999999998 333332 257899999999887333222 78889999999998888762
Q ss_pred HhhhccCCCCcEEeccccc
Q 015001 270 CNGISKLPLLEYLSMTKCH 288 (414)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~ 288 (414)
. .+..+++|+.|+|+++.
T Consensus 191 ~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp G-GGTTCTTCSEEECCSEE
T ss_pred h-HHccCCCCCEEEccCCc
Confidence 2 36778999999999864
No 74
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.22 E-value=2.7e-11 Score=124.15 Aligned_cols=230 Identities=17% Similarity=0.134 Sum_probs=141.2
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++.... ...+|. .+..+++|++|++++|.+... ..+..+++|++|+|+++.++.- ....+..+++|++
T Consensus 25 ~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQ--LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSC--CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEECCCCC--CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCE
Confidence 578888887632 334554 466788899999988876543 3456788899999988876321 1123567889999
Q ss_pred EEeeccCCcce--eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeeccccee-ee--ccccccCceeEeec
Q 015001 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VN--VSSCGNLKCLKFDF 261 (414)
Q Consensus 191 L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~ 261 (414)
|++++|..... -.+..+++|+.|++++| .+.... ..+++|++|+++++...... .. ...+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99988854321 13556788999998888 222221 25788888888887622221 11 23457888898887
Q ss_pred cCCchHHHHhhhccC---------------------------CCCcEEecccccccccccc---cc--cccceEEeeccC
Q 015001 262 LPIEDEWLCNGISKL---------------------------PLLEYLSMTKCHKLTSVRI---SS--PCLKTLILECCD 309 (414)
Q Consensus 262 ~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~~~~l~~---~~--~~L~~L~l~~c~ 309 (414)
+.+.... ...+..+ ++|+.|+++++......+. .+ ++|+.|++++|.
T Consensus 181 n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 7654311 1112222 4566666666422221111 22 348888888775
Q ss_pred CceEe---eccCCCeeeEEEeCcee-----EEeccCCccceEEEEee
Q 015001 310 KLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (414)
Q Consensus 310 ~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~ 348 (414)
..... ....++|+.+.+.++.. ..+.++++|+.|+++.+
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 43222 12446788888877655 34567788888888643
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.22 E-value=6.5e-12 Score=118.74 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=46.7
Q ss_pred cCceeEeeccCCch---HHHHhhhccCC-CCcEEecccccccc----cccc---c-ccccceEEeeccCCceE-------
Q 015001 253 NLKCLKFDFLPIED---EWLCNGISKLP-LLEYLSMTKCHKLT----SVRI---S-SPCLKTLILECCDKLIQ------- 313 (414)
Q Consensus 253 ~L~~L~l~~~~~~~---~~~~~~~~~~~-~L~~L~l~~c~~~~----~l~~---~-~~~L~~L~l~~c~~l~~------- 313 (414)
+|++|+++++.+.+ ..+...+..++ +|+.|+++++.... .+.. . .++|++|++++|..-..
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 66666666655543 22333344443 66666666642111 0111 1 24566666666543211
Q ss_pred eeccCCCeeeEEEeCcee------------EEeccCCccceEEEEee
Q 015001 314 VEIETPNLSIFKYHGDLI------------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 314 ~~~~~p~L~~l~~~~~~~------------~~~~~~~~L~~L~l~~~ 348 (414)
.....++|+.+.+.++.. ..+.+.++|+.|+++.+
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 012234566666655541 23455667777777766
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=1.5e-11 Score=111.45 Aligned_cols=171 Identities=17% Similarity=0.120 Sum_probs=117.6
Q ss_pred ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCce
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKE 212 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~ 212 (414)
...+++|++|+++++.+........+++|++|+++++.+..- . .+..+++|++|++++|...... .+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344688999999999887767788899999999999988432 1 3678999999999998544222 2456789999
Q ss_pred EEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 213 L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
|++++| .+..+. ..+++|++|+++++....+.. .++.+++|+.|+++++.+... ....+..+++|+.|+++++
T Consensus 114 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred EECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCC
Confidence 999988 343333 246788888888776332222 256778888888887776542 2233466778888888875
Q ss_pred cccccc---cccccccceEEeeccCC
Q 015001 288 HKLTSV---RISSPCLKTLILECCDK 310 (414)
Q Consensus 288 ~~~~~l---~~~~~~L~~L~l~~c~~ 310 (414)
...... ...+++|+.|++++|..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCc
Confidence 322211 23566777777776643
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.21 E-value=2.1e-11 Score=108.18 Aligned_cols=166 Identities=19% Similarity=0.146 Sum_probs=83.4
Q ss_pred CcccEEEecCcccCCC--CccccCcccceeEeeEEE-cChHHHHHHHhCCCcccEEEeeccCCcceee---cCCCCCCce
Q 015001 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKE 212 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~---i~~l~~L~~ 212 (414)
.+|++|+++++.+... ..+..+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+. +..+++|+.
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3667777777655422 235566667777776664 32111 1123566667777776633333332 334566666
Q ss_pred EEEeecCCCceEe--eecccee---eeEeeee-cccceee-eccccccCc-eeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001 213 IILVNTSDIKRVE--IKTSNVN---ALAIHQT-YLFPIEV-NVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (414)
Q Consensus 213 L~l~~~~~l~~~~--~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (414)
|++++| .+..++ ...++|+ +|+++++ ....++. .+.++++|+ +|+++++.+..- ....+.. ++|+.|++
T Consensus 110 L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEEC
T ss_pred EeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEc
Confidence 666666 222222 1344444 6666665 3222221 255566666 666666655421 1111222 56666666
Q ss_pred cccccccccc----ccc-cccceEEeecc
Q 015001 285 TKCHKLTSVR----ISS-PCLKTLILECC 308 (414)
Q Consensus 285 ~~c~~~~~l~----~~~-~~L~~L~l~~c 308 (414)
+++..+..++ ..+ ++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 6653333332 134 56666666654
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=2.7e-11 Score=107.45 Aligned_cols=191 Identities=13% Similarity=0.112 Sum_probs=127.2
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcc-cCCC--CccccCcccceeEeeE-EEcChHHHHHHHhCCCcc
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI 188 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~~--~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~L 188 (414)
.++++|++.... ...+|. .+..+++|++|++++|. +... ..+..+++|++|++++ +.++.-. ...+..+++|
T Consensus 31 ~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 378888887632 334554 45678899999999986 5322 3567889999999988 5553211 1235678999
Q ss_pred cEEEeeccCCcceeecCCCCCCc---eEEEeecCCCceEee----ecccee-eeEeeeecccceeeeccccccCceeEee
Q 015001 189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD 260 (414)
Q Consensus 189 e~L~l~~c~~~~~l~i~~l~~L~---~L~l~~~~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 260 (414)
++|++++|....--.+..+++|+ .|+++++..+..+.. .+++|+ +|+++++....++......++|++|+++
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999988543311244566777 899988755666553 467888 9999887633333332233789999998
Q ss_pred ccC-CchHHHHhhhccC-CCCcEEecccccccccccc-cccccceEEeeccC
Q 015001 261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD 309 (414)
Q Consensus 261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~ 309 (414)
++. +..- ....+..+ ++|+.|+++++. +..++. .+++|+.|.+.++.
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTTC-
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccCcc
Confidence 884 6531 12335667 899999999853 334443 67888888887764
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=3.1e-11 Score=109.20 Aligned_cols=79 Identities=22% Similarity=0.115 Sum_probs=39.9
Q ss_pred CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~ 214 (414)
+++++|+++++.+... ..+..+++|++|+++++.++.- ...++..+++|++|++++|...... .+..+++|+.|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 4566777776655433 2355666666666666655211 1122345666666666655332110 122345555555
Q ss_pred Eeec
Q 015001 215 LVNT 218 (414)
Q Consensus 215 l~~~ 218 (414)
++++
T Consensus 116 l~~n 119 (270)
T 2o6q_A 116 LDRN 119 (270)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 5554
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.20 E-value=3.9e-11 Score=120.24 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=63.9
Q ss_pred cccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc--ccc---cccccccceEEeeccCCceEee----ccCC
Q 015001 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL--TSV---RISSPCLKTLILECCDKLIQVE----IETP 319 (414)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~--~~l---~~~~~~L~~L~l~~c~~l~~~~----~~~p 319 (414)
..+++|++|+++++.+.+. .+..+..+++|+.|+++++... ..+ ...+++|+.|++++|.....++ ...+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 5667788888887777652 2233567788888888875322 122 2366788888888876543232 2346
Q ss_pred CeeeEEEeCcee--EEeccC-CccceEEEEee
Q 015001 320 NLSIFKYHGDLI--SFSSNA-LSLSETSLCFS 348 (414)
Q Consensus 320 ~L~~l~~~~~~~--~~~~~~-~~L~~L~l~~~ 348 (414)
+|+.+.+.++.. ...... ++|+.|+++.+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N 460 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSS
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCC
Confidence 788888877765 222233 68999998877
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=3.9e-12 Score=117.55 Aligned_cols=105 Identities=16% Similarity=0.097 Sum_probs=65.5
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC--Ccc--ccCcccceeEeeEEEcChHH--H-HHHHhC
Q 015001 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--I-ASLISG 184 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~~--l-~~ll~~ 184 (414)
..++.+.+.........+.. .....++|++|++++|.+... ... ..+++|++|+|++|.++... + ..-+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 36777777653221111111 122346799999999977532 333 78899999999999884311 1 112347
Q ss_pred CCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001 185 CPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (414)
Q Consensus 185 ~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~ 218 (414)
+++|++|++++|...... .+..+++|+.|++++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 179 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN 179 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC
Confidence 889999999888653221 3445677777777776
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=5.6e-12 Score=120.23 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=131.8
Q ss_pred hCCCeEEEEEecCC--ccccCCccc-------cCCCcccEEEecCcccCCC------CccccCcccceeEeeEEEcChHH
Q 015001 113 ESEVKELVLVHWRS--ERRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA 177 (414)
Q Consensus 113 ~~~l~~L~l~~~~~--~~~~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~ 177 (414)
.+++++|+++.+.. -...+|..+ ..+++|++|++++|.+... .....+++|++|+|++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 35888888876421 112344333 5678899999998877652 24567888999999988875333
Q ss_pred ---HHHHHhCC---------CcccEEEeeccCCc-cee-----ecCCCCCCceEEEeecCCCce---------Eeeeccc
Q 015001 178 ---IASLISGC---------PLIEYLEIRSCEGL-ESL-----DLVNLSNLKEIILVNTSDIKR---------VEIKTSN 230 (414)
Q Consensus 178 ---l~~ll~~~---------p~Le~L~l~~c~~~-~~l-----~i~~l~~L~~L~l~~~~~l~~---------~~~~~p~ 230 (414)
+...+..+ ++|++|++++|... ..+ .+..+++|+.|++++| .+.. ....+++
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCC
Confidence 33334444 89999999888653 111 2334688999999888 3331 1125688
Q ss_pred eeeeEeeeecc-----cceeeeccccccCceeEeeccCCchHHH---Hhhh--ccCCCCcEEecccccccc----cccc-
Q 015001 231 VNALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWL---CNGI--SKLPLLEYLSMTKCHKLT----SVRI- 295 (414)
Q Consensus 231 L~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~c~~~~----~l~~- 295 (414)
|++|+++++.. ..++..+..+++|++|++++|.+.+... ...+ ..+++|+.|++++|.... .++.
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 99999988773 2234456788999999999998877533 3334 238999999999974333 2332
Q ss_pred ---cccccceEEeeccCC
Q 015001 296 ---SSPCLKTLILECCDK 310 (414)
Q Consensus 296 ---~~~~L~~L~l~~c~~ 310 (414)
.+++|++|++++|..
T Consensus 298 l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHCTTCCEEECTTSBS
T ss_pred HHhcCCCceEEEccCCcC
Confidence 468899998888754
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.19 E-value=2.1e-11 Score=125.01 Aligned_cols=52 Identities=15% Similarity=0.051 Sum_probs=31.7
Q ss_pred cccccceEEeeccCCceEe----eccCCCeeeEEEeCcee-------------EEeccCCccceEEEEee
Q 015001 296 SSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (414)
Q Consensus 296 ~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-------------~~~~~~~~L~~L~l~~~ 348 (414)
.+++|+.|++++|... .+ ....++|+.+.+.++.. ..+.++++|+.|+++.+
T Consensus 478 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 4566777777665432 22 12345677777776654 12566788888888766
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.18 E-value=4.7e-11 Score=109.19 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=129.2
Q ss_pred cCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEE
Q 015001 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l 215 (414)
..+++|++|++++|.+...+....+++|++|+++++.++.... +..+++|++|++++|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 3468899999999988766678889999999999998843222 7899999999999986543224667899999999
Q ss_pred eecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc
Q 015001 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (414)
Q Consensus 216 ~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l 293 (414)
++| .+..+. ..+++|++|+++++....+ ..+..+++|+.|+++++.+.+. .. +..+++|+.|+++++. +..+
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCC
Confidence 999 344333 2578999999999874433 4678899999999999988763 22 7789999999999962 2222
Q ss_pred --cccccccceEEeeccCC
Q 015001 294 --RISSPCLKTLILECCDK 310 (414)
Q Consensus 294 --~~~~~~L~~L~l~~c~~ 310 (414)
...+++|+.|++++|..
T Consensus 194 ~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCcc
Confidence 23778999999998754
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.18 E-value=1.3e-11 Score=114.18 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=127.4
Q ss_pred HHHHHhCCCeEEEEEecCCccccCCccc--cCCCcccEEEecCcccCCC-CccccC-----cccceeEeeEEEcChHHHH
Q 015001 108 LGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP-SENVKL-----FSLRKLALREVCADDQAIA 179 (414)
Q Consensus 108 l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~-~~~~~l-----~~L~~L~L~~~~~~~~~l~ 179 (414)
+.....+++++|++..+.- ...+|..+ ..+++|++|++++|.+... .....+ ++|++|+++++.++....
T Consensus 89 ~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~- 166 (312)
T 1wwl_A 89 LRVLGISGLQELTLENLEV-TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC- 166 (312)
T ss_dssp HHHHTTSCCCEEEEEEEBC-BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT-
T ss_pred HHhcCcCCccEEEccCCcc-cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH-
Confidence 3333457999999998432 22456655 6789999999999987543 333444 899999999998843222
Q ss_pred HHHhCCCcccEEEeeccCCcce------eecCCCCCCceEEEeecCCCce---Ee----eeccceeeeEeeeeccccee-
Q 015001 180 SLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNTSDIKR---VE----IKTSNVNALAIHQTYLFPIE- 245 (414)
Q Consensus 180 ~ll~~~p~Le~L~l~~c~~~~~------l~i~~l~~L~~L~l~~~~~l~~---~~----~~~p~L~~L~l~~~~~~~~~- 245 (414)
..+..+++|++|++++|..... +....+++|+.|++++| .+.. +. ..+++|++|+++++......
T Consensus 167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence 2367899999999999975432 12266899999999998 4432 21 13478888888877622211
Q ss_pred -eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc--cccccccceEEeeccC
Q 015001 246 -VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV--RISSPCLKTLILECCD 309 (414)
Q Consensus 246 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l--~~~~~~L~~L~l~~c~ 309 (414)
..+..+++|+.|+++++.+.. ++..+. ++|+.|+++++. +..+ ...+++|+.|+++++.
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQ--VPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSS--CCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhhhcCCCCEEECCCCccCh--hhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCC
Confidence 234456788888888877662 222122 677888887752 1211 2356677777776654
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=3e-11 Score=121.41 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=85.6
Q ss_pred CCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEee
Q 015001 138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (414)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~ 217 (414)
+++|+.|++++|.+...+.+..+++|+.|+|++|.+..... +..+++|+.|.|++|.....-.+..+++|+.|++++
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecC
Confidence 45566666666655544455566666666666665522111 456666666666665433211344456666666666
Q ss_pred cCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc-
Q 015001 218 TSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR- 294 (414)
Q Consensus 218 ~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~- 294 (414)
| .+..+. ..+++|+.|+++++....+ ..+..+++|+.|+|++|.+.+. .. +..+++|+.|+|++|. +..+.
T Consensus 119 N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l~~ 192 (605)
T 1m9s_A 119 N-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLRA 192 (605)
T ss_dssp S-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCGG
T ss_pred C-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCChH
Confidence 6 222222 1456666666666552222 3455566666666666655442 11 4556666666666642 11121
Q ss_pred -ccccccceEEeeccC
Q 015001 295 -ISSPCLKTLILECCD 309 (414)
Q Consensus 295 -~~~~~L~~L~l~~c~ 309 (414)
..+++|+.|++++|.
T Consensus 193 l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCSEEECCSEE
T ss_pred HccCCCCCEEEccCCc
Confidence 245566666666553
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.16 E-value=2.4e-11 Score=110.25 Aligned_cols=201 Identities=17% Similarity=0.152 Sum_probs=111.7
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
...+|..+. ++|++|+++++.+... ..+..+++|++|+++++.++... ...+..+++|++|++++|...... .
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 345565442 5788899988876432 35677888888888888763211 112567888888888887543211 2
Q ss_pred cCCCCCCceEEEeec--CCCceEe-eeccceeeeEeeeecccc--eeeeccccccCceeEeeccCCchH---HHHhhhcc
Q 015001 204 LVNLSNLKEIILVNT--SDIKRVE-IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISK 275 (414)
Q Consensus 204 i~~l~~L~~L~l~~~--~~l~~~~-~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~ 275 (414)
+..+++|+.|++++| ..+.... ..+++|++|+++++.... ++..+..+++|++|+++++.+... .+.. +..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 455678888888777 1111111 145667777776665222 334566667777777766665431 1111 122
Q ss_pred CCCCc-EEeccccccccccc---ccccccceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeec
Q 015001 276 LPLLE-YLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSS 349 (414)
Q Consensus 276 ~~~L~-~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~ 349 (414)
++.|. .|+++++.. ..+. ....+|+.|++++|... .++ ...+.++++|++|+++.++
T Consensus 175 L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~l~-~~~---------------~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 175 MPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK-SVP---------------DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSCCS-CCC---------------TTTTTTCCSCCEEECCSSC
T ss_pred ccccceeeecCCCcc-cccCccccCCCcccEEECCCCcee-ecC---------------HhHhcccccccEEEccCCc
Confidence 22222 555555321 1111 12235566665554311 110 0234667888888888774
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.16 E-value=1.7e-10 Score=112.25 Aligned_cols=76 Identities=12% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+.- ..+| .+..+++|++|++++|.+...+ ...++|++|+++++.+.. +.. +..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l--~~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQL--EKLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCC--CCCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence 4788888876432 2466 4677788888888887665321 123467777777766532 111 456666666666
Q ss_pred eccC
Q 015001 194 RSCE 197 (414)
Q Consensus 194 ~~c~ 197 (414)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6654
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.15 E-value=2.2e-11 Score=113.55 Aligned_cols=225 Identities=17% Similarity=0.071 Sum_probs=110.7
Q ss_pred CCCeEEEEEecCCccccCC-ccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
++++.|++.... ...++ ..+..+++|++|++++|.+... ..+..+++|++|+++++.++. +.. ...++|++
T Consensus 54 ~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 355555554422 11222 2344556666666666554321 334555666666666555421 100 11255666
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCce-----EeeeccceeeeEeeeecccceeeeccccccCceeEeeccC
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~-----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (414)
|++++|...... .+..+++|+.|+++++ .+.. -.....+|++|+++++....++..+ .++|++|+++++.
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNK 204 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccc--cCCCCEEECCCCc
Confidence 666655432111 1344566666666655 2211 0111125666666655522222221 2577777777766
Q ss_pred CchHHHHhhhccCCCCcEEeccccccccc---ccccccccceEEeeccCCceEee---ccCCCeeeEEEeCcee-----E
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS---VRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----S 332 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~~~~---l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~l~~~~~~~-----~ 332 (414)
+.... ...+..+++|+.|+++++..... ....+++|+.|++++|... .++ ...++|+.+.+.++.. .
T Consensus 205 i~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 205 IQAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 65421 12345667777777777522211 1235677777777776432 332 2345677777766654 1
Q ss_pred Eecc------CCccceEEEEeec
Q 015001 333 FSSN------ALSLSETSLCFSS 349 (414)
Q Consensus 333 ~~~~------~~~L~~L~l~~~~ 349 (414)
.+.. .++|+.+++..++
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSS
T ss_pred HccccccccccccccceEeecCc
Confidence 1111 3556777776663
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=3.6e-11 Score=103.29 Aligned_cols=147 Identities=17% Similarity=0.157 Sum_probs=93.9
Q ss_pred cCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcc--eeecCCCCCCceE
Q 015001 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI 213 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~--~l~i~~l~~L~~L 213 (414)
..+++|++|+++++.+...+....+++|++|++++|.+..-. .+..+++|++|++++|.... .-.+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l------ 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGL------ 111 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTC------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCC------
Confidence 345778888888877765445667777777777777552211 24566777777777664332 1123334
Q ss_pred EEeecCCCceEeeeccceeeeEeeeecc-cceeeeccccccCceeEeeccC-CchHHHHhhhccCCCCcEEecccccccc
Q 015001 214 ILVNTSDIKRVEIKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (414)
Q Consensus 214 ~l~~~~~l~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~~~ 291 (414)
++|++|+++++.. ...+..+..+++|++|+++++. +.+- . .+..+++|+.|++++|....
T Consensus 112 ---------------~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 112 ---------------TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp ---------------TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBCCCC
T ss_pred ---------------CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCCCcC
Confidence 4455555554441 1123456788999999999887 6552 2 47889999999999974222
Q ss_pred c-ccccccccceEEeeccC
Q 015001 292 S-VRISSPCLKTLILECCD 309 (414)
Q Consensus 292 ~-l~~~~~~L~~L~l~~c~ 309 (414)
- ....+++|++|+++++.
T Consensus 174 ~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 174 YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CTTGGGCSSCCEEEECBC-
T ss_pred hHHhccCCCCCEEEeeCcc
Confidence 1 23378999999998864
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.13 E-value=7.8e-11 Score=107.69 Aligned_cols=170 Identities=16% Similarity=0.071 Sum_probs=100.2
Q ss_pred ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~ 214 (414)
+..++++++++++++.+...+. .-.++++.|+|+++.++.... ..+..+++|++|++++|.....-....+++|+.|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 4455677777777776643221 123577777777776632211 23566778888888777543222234567777777
Q ss_pred EeecCCCceEe---eeccceeeeEeeeeccccee-eeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccc
Q 015001 215 LVNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKL 290 (414)
Q Consensus 215 l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~ 290 (414)
++++ .+..++ ...++|++|+++++....++ ..+.++++|++|+++++.+..- ....+..+++|+.|+++++. +
T Consensus 84 Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l 160 (290)
T 1p9a_G 84 LSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-L 160 (290)
T ss_dssp CCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-C
T ss_pred CCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-C
Confidence 7777 333332 24567777777776633332 3466777888888877776531 22234566777888777752 2
Q ss_pred cccc----ccccccceEEeeccC
Q 015001 291 TSVR----ISSPCLKTLILECCD 309 (414)
Q Consensus 291 ~~l~----~~~~~L~~L~l~~c~ 309 (414)
..++ ..+++|+.|++++|.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHhcCcCCCCEEECCCCc
Confidence 2222 245677777776653
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=9.2e-11 Score=106.34 Aligned_cols=126 Identities=22% Similarity=0.211 Sum_probs=90.7
Q ss_pred cccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe----eeccceeee
Q 015001 161 FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNAL 234 (414)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L 234 (414)
++|++|+++++.++.... ..+..+++|++|++++|...... .+..+++|+.|++++| .+..+. ..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCH-hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence 579999999988743222 13578999999999998543211 3556799999999988 455444 256889999
Q ss_pred Eeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccc
Q 015001 235 AIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (414)
Q Consensus 235 ~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (414)
+++++..... ...++.+++|++|+++++.+....++..+..+++|+.|+++++.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 9988762222 22477888999999988887653344556778899999998863
No 93
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.08 E-value=4.1e-10 Score=113.38 Aligned_cols=212 Identities=15% Similarity=0.037 Sum_probs=145.8
Q ss_pred hCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
..+++.+++.... ...+|..+. ++|++|++++|.+...+. .+++|++|+|++|.++. +. ..+++|++|+
T Consensus 39 ~~~l~~L~ls~n~--L~~lp~~l~--~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~ 107 (622)
T 3g06_A 39 NNGNAVLNVGESG--LTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LP---VLPPGLLELS 107 (622)
T ss_dssp HHCCCEEECCSSC--CSCCCSCCC--TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSC--CC---CCCTTCCEEE
T ss_pred CCCCcEEEecCCC--cCccChhhC--CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEE
Confidence 3478999887643 337777665 899999999998864333 68999999999998742 11 2789999999
Q ss_pred eeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh
Q 015001 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (414)
Q Consensus 193 l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (414)
+++|.... +.. .+++|+.|++++| .+..++...++|++|+++++....++ ..+++|+.|++.++.+.. +
T Consensus 108 Ls~N~l~~-l~~-~l~~L~~L~L~~N-~l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~~N~l~~-----l 176 (622)
T 3g06_A 108 IFSNPLTH-LPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLTS-----L 176 (622)
T ss_dssp ECSCCCCC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-----C
T ss_pred CcCCcCCC-CCC-CCCCcCEEECCCC-CCCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECCCCCCCC-----C
Confidence 99985432 222 4689999999998 56666666799999999998733322 346799999999988765 2
Q ss_pred hccCCCCcEEecccccccccccccccccceEEeeccCCceEeeccCCCeeeEEEeCcee-EEeccCCccceEEEEee
Q 015001 273 ISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-SFSSNALSLSETSLCFS 348 (414)
Q Consensus 273 ~~~~~~L~~L~l~~c~~~~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~-~~~~~~~~L~~L~l~~~ 348 (414)
...+++|+.|+++++. +..++...++|+.|.+++|.. ..++...++|+.|.+.++.. ..-..+++|++|+++.+
T Consensus 177 ~~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l-~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRL-TSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcc-cccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCC
Confidence 2567999999999963 444555567777777776642 23333345566666655543 11123344444444433
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.08 E-value=1.5e-10 Score=104.60 Aligned_cols=168 Identities=17% Similarity=0.152 Sum_probs=111.6
Q ss_pred CCCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccE
Q 015001 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~ 190 (414)
+++++|++.... ...++. .+..+++|++|+++++.+... ..+..+++|++|+++++.+..-. ...+..+++|++
T Consensus 37 ~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNK--LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSC--CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCC--CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 478888887632 334554 566789999999999987543 33577999999999998874221 133578999999
Q ss_pred EEeeccCCccee--ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceee-eccccccCceeEeeccC
Q 015001 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 191 L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 263 (414)
|++++|...... .+..+++|+.|++++| .+..+.. .+++|++|+++++....+.. .+..+++|+.|+++++.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence 999988643221 2456789999999888 3433332 45777777777765322222 35567777777777776
Q ss_pred CchHHHHhhhccCCCCcEEeccc
Q 015001 264 IEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
+..- ....+..+++|+.|++++
T Consensus 193 l~~~-~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 193 LKRV-PEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp CSCC-CTTTTTTCTTCCEEECCS
T ss_pred CCcC-CHHHhccccCCCEEEecC
Confidence 5531 122345567777777766
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.05 E-value=1.6e-10 Score=104.03 Aligned_cols=144 Identities=15% Similarity=0.191 Sum_probs=86.8
Q ss_pred ccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEE
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~ 214 (414)
+..+++|++|++++|.+...+....+++|+.|+|++|.++.-.. +..+++|++|++++|....--.+.. ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcccc-CcccEEE
Confidence 44567788888888877655566777888888888877733221 6677888888888775432112222 6677777
Q ss_pred EeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 215 LVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 215 l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+++| .+..+. ..+++|+.|+++++....+. .+..+++|+.|+++++.+.+. ..+..+++|+.|+++++
T Consensus 113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEE
T ss_pred ccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCC
Confidence 7766 333222 13556666666665522222 455566666666666665543 33555666666666663
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.03 E-value=2.3e-10 Score=104.50 Aligned_cols=185 Identities=14% Similarity=0.070 Sum_probs=118.4
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEE
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~ 192 (414)
+++++++.. .....+|..+. ++++.|+++++.+... ..+..+++|+.|+|+++.++.-.. ...+++|++|+
T Consensus 11 ~l~~l~~~~--~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDK--RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTT--SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCC--CCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 556665543 23345665443 6788888888876432 456778888888888877632111 15788888888
Q ss_pred eeccCCcce-eecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCch
Q 015001 193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 193 l~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (414)
+++|....- ..+..+++|+.|+++++ .+..+. ..+++|++|+++++....++. .+..+++|+.|+++++.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888754311 12445788888888887 444333 246788888888876333222 35677888899988887763
Q ss_pred HHHHhhhccCCCCcEEecccccccccccc---cccccceEEeeccC
Q 015001 267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (414)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~~~~l~~---~~~~L~~L~l~~c~ 309 (414)
.....+..+++|+.|+++++. +..++. ..++|++|.+++++
T Consensus 163 -l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 -LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp -CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred -cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 122335667888899888852 223332 45577888877654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.00 E-value=6.3e-10 Score=110.72 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=122.1
Q ss_pred HhCCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEE
Q 015001 112 IESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (414)
Q Consensus 112 ~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L 191 (414)
...+++.|++.... ...+|..++ ++|++|++++|.+...+ ..+++|++|+|++|.++. +.. +. .+|++|
T Consensus 57 ~~~~L~~L~Ls~n~--L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L 125 (571)
T 3cvr_A 57 LINQFSELQLNRLN--LSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHL 125 (571)
T ss_dssp HHTTCSEEECCSSC--CSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEE
T ss_pred ccCCccEEEeCCCC--CCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEE
Confidence 34589999987643 234777553 78999999999887434 668999999999988743 222 22 289999
Q ss_pred EeeccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHh
Q 015001 192 EIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (414)
Q Consensus 192 ~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (414)
++++|.... +.- .+++|+.|++++| .+..++..+++|++|+++++....++. +. ++|+.|++++|.+.. ++.
T Consensus 126 ~Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~ 197 (571)
T 3cvr_A 126 DVDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA 197 (571)
T ss_dssp ECCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC
T ss_pred ECCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh
Confidence 999886433 322 5688999999988 444444467889999999887444444 44 899999999888763 222
Q ss_pred hhccCCCC-------cEEeccccccccccc---ccccccceEEeeccCCce
Q 015001 272 GISKLPLL-------EYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI 312 (414)
Q Consensus 272 ~~~~~~~L-------~~L~l~~c~~~~~l~---~~~~~L~~L~l~~c~~l~ 312 (414)
+. .+| +.|+++++. +..++ ..+++|+.|++++|...+
T Consensus 198 -~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 198 -VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred -HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 22 155 888888852 22333 257788888888886543
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.99 E-value=1.4e-10 Score=104.41 Aligned_cols=165 Identities=12% Similarity=0.043 Sum_probs=122.0
Q ss_pred CCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEee
Q 015001 138 VESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVN 217 (414)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~ 217 (414)
+.+++.++++.+.+........+++|+.|+++++.++.-. -+..+++|++|++++|.......+..+++|+.|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence 3556667777776654445778999999999999874322 3678999999999998654322377789999999999
Q ss_pred cCCCceEe-eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccc-cccc
Q 015001 218 TSDIKRVE-IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT-SVRI 295 (414)
Q Consensus 218 ~~~l~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~-~l~~ 295 (414)
| .+..+. ...++|++|+++++....+ ..+..+++|+.|+++++.+.+- . .+..+++|+.|+++++.... ....
T Consensus 95 N-~l~~l~~~~~~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i~~~~~l~ 169 (263)
T 1xeu_A 95 N-RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEITNTGGLT 169 (263)
T ss_dssp S-CCSCCTTCCCSSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred C-ccCCcCccccCcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcCcchHHhc
Confidence 9 333222 1128999999999884333 2578899999999999998763 2 47789999999999963222 2223
Q ss_pred cccccceEEeeccCC
Q 015001 296 SSPCLKTLILECCDK 310 (414)
Q Consensus 296 ~~~~L~~L~l~~c~~ 310 (414)
.+++|+.|++++|..
T Consensus 170 ~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKC 184 (263)
T ss_dssp TCCCCCEEEEEEEEE
T ss_pred cCCCCCEEeCCCCcc
Confidence 678999999988754
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=9.4e-10 Score=103.30 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=17.8
Q ss_pred ccCCCCcEEecccccccccccc-cccccceEEeeccCCceEe
Q 015001 274 SKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 274 ~~~~~L~~L~l~~c~~~~~l~~-~~~~L~~L~l~~c~~l~~~ 314 (414)
..+++|+.|+++++ .+..++. .+.+|++|.+.++..++++
T Consensus 199 ~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 199 HGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp TTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred ccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 34455555555553 2333322 3444555554444444433
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.98 E-value=1.6e-10 Score=109.20 Aligned_cols=174 Identities=16% Similarity=0.068 Sum_probs=81.4
Q ss_pred ccCCC-cccEEEecCcccCCC--Ccccc-----CcccceeEeeEEEcCh---HHHHHHHhCC-CcccEEEeeccCCccee
Q 015001 135 IFYVE-SLHVLELSYCKLQQP--SENVK-----LFSLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL 202 (414)
Q Consensus 135 ~~~~~-~L~~L~L~~~~~~~~--~~~~~-----l~~L~~L~L~~~~~~~---~~l~~ll~~~-p~Le~L~l~~c~~~~~l 202 (414)
+..++ +|++|++++|.+... ..... +++|++|+|++|.+++ ..+...+..+ ++|++|++++|.....-
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 33444 566666666655432 11222 2566666666666522 2333334444 56666666666432110
Q ss_pred ------ecCC-CCCCceEEEeecCCCceEe--------eecc-ceeeeEeeeeccccee-e----ecccc-ccCceeEee
Q 015001 203 ------DLVN-LSNLKEIILVNTSDIKRVE--------IKTS-NVNALAIHQTYLFPIE-V----NVSSC-GNLKCLKFD 260 (414)
Q Consensus 203 ------~i~~-l~~L~~L~l~~~~~l~~~~--------~~~p-~L~~L~l~~~~~~~~~-~----~~~~~-~~L~~L~l~ 260 (414)
.+.. .++|+.|++++| .+.... ...+ +|++|+++++...... . .+..+ ++|++|+++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls 204 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred HHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence 0112 146666666665 222111 0122 6666666665521111 1 12233 366666666
Q ss_pred ccCCchH---HHHhhhcc-CCCCcEEecccccccc-------cccccccccceEEeeccC
Q 015001 261 FLPIEDE---WLCNGISK-LPLLEYLSMTKCHKLT-------SVRISSPCLKTLILECCD 309 (414)
Q Consensus 261 ~~~~~~~---~~~~~~~~-~~~L~~L~l~~c~~~~-------~l~~~~~~L~~L~l~~c~ 309 (414)
++.+.+. .+...+.. .++|+.|+++++.... .....+++|+.|++++|.
T Consensus 205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 6665542 12222333 3466666666642111 112245666666666664
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=5.7e-10 Score=99.64 Aligned_cols=154 Identities=15% Similarity=0.138 Sum_probs=85.7
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
...+|..+. +++++|+++++.+... ..+..+++|++|+|+++.+.... ...+..+++|++|++++|...... .
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhH
Confidence 345555443 5778888888776433 34667778888888777663211 122456777777777776543211 2
Q ss_pred cCCCCCCceEEEeecCCCceEee----eccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCC
Q 015001 204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (414)
+..+++|+.|+++++ .+..+.. .+++|++|+++++....++. .++.+++|+.|+++++.+... ....+..+++
T Consensus 103 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~ 180 (251)
T 3m19_A 103 FDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV-PHGAFDRLGK 180 (251)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTT
T ss_pred hcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc-CHHHHhCCCC
Confidence 344667777777766 3333321 34566666666655222222 345556666666666655431 1122344556
Q ss_pred CcEEeccc
Q 015001 279 LEYLSMTK 286 (414)
Q Consensus 279 L~~L~l~~ 286 (414)
|+.|++++
T Consensus 181 L~~L~l~~ 188 (251)
T 3m19_A 181 LQTITLFG 188 (251)
T ss_dssp CCEEECCS
T ss_pred CCEEEeeC
Confidence 66666655
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=1.1e-09 Score=97.78 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=83.3
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEe
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV 216 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~ 216 (414)
.+.++++++++.+...+.. -.++|+.|+|+++.+..... ..+..+++|++|++++|...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 5678899998877543221 22689999999988733221 23567899999999988543221 24556788888888
Q ss_pred ecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 217 ~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
++ .+..+. ..+++|++|+++++....++. .+..+++|+.|+++++.+..- ....+..+++|+.|+++++
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCCC
Confidence 77 333332 134566666666555222221 134555666666655554421 1112344455555555553
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.91 E-value=4.4e-10 Score=93.76 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=68.2
Q ss_pred CcccEEEecCcccC---CCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEE
Q 015001 139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (414)
Q Consensus 139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l 215 (414)
++|++|++++|.+. .+.....+++|+.|++++|.++.. ..+..+++|++|++++|.....
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------------- 86 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------------- 86 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC--------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH--------------
Confidence 66777777777664 223345666777777766655322 2244455555555555433211
Q ss_pred eecCCCceEeeeccceeeeEeeeeccccee--eeccccccCceeEeeccCCchHHH--HhhhccCCCCcEEecccc
Q 015001 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 216 ~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c 287 (414)
+......+++|++|+++++....++ ..+..+++|+.|+++++.+..... ...+..+++|+.|++++|
T Consensus 87 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 87 -----LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp -----CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred -----HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 1111112445555555544422211 345667777777777776654211 234566777777777775
No 104
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.91 E-value=4.8e-10 Score=73.86 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.4
Q ss_pred CCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhc
Q 015001 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (414)
Q Consensus 8 ~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw 46 (414)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999754
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.86 E-value=5.9e-09 Score=97.84 Aligned_cols=214 Identities=17% Similarity=0.180 Sum_probs=124.5
Q ss_pred ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---e
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---D 203 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~ 203 (414)
.++|..+ .+++++|+|+++.+... ..+.++++|++|+|++|.+....-...+.++++|.++.+..+..+..+ .
T Consensus 22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 3555544 25677888887766432 345677788888887776522111123456777776555554444444 2
Q ss_pred cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeec-ccceee-ecccc-ccCceeEeeccCCchHHHHhhhccC
Q 015001 204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEV-NVSSC-GNLKCLKFDFLPIEDEWLCNGISKL 276 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (414)
+..+++|+.|+++++ .+..+. ....++..+++.++. ...++. .+..+ ..++.|+++++.+.. +.......
T Consensus 100 f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f~~ 176 (350)
T 4ay9_X 100 FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAFNG 176 (350)
T ss_dssp BCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSSTT
T ss_pred hhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhccc
Confidence 455678888888877 333222 234556666665543 111111 23333 367788888877653 22222334
Q ss_pred CCCcEEecccccccccccc----cccccceEEeeccCCceEeec-cCCCeeeEEEeCcee----EEeccCCccceEEEEe
Q 015001 277 PLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSLCF 347 (414)
Q Consensus 277 ~~L~~L~l~~c~~~~~l~~----~~~~L~~L~l~~c~~l~~~~~-~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~ 347 (414)
.+|+.|.+.++..++.++. .+++|+.|++++|. +..++. .+.+|++|...+... ..+.+.++|+.+++..
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 6788888877666666553 56788888888774 444432 345677776665433 4456677788777754
Q ss_pred e
Q 015001 348 S 348 (414)
Q Consensus 348 ~ 348 (414)
+
T Consensus 256 ~ 256 (350)
T 4ay9_X 256 P 256 (350)
T ss_dssp H
T ss_pred C
Confidence 4
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.86 E-value=2.5e-10 Score=93.19 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=19.1
Q ss_pred CcccEEEecCcccC---CCCccccCcccceeEeeEEEc
Q 015001 139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCA 173 (414)
Q Consensus 139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~ 173 (414)
++|++|++++|.+. .+.....+++|+.|++++|.+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 54 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL 54 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC
Confidence 55666666666554 123334555555555555544
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.84 E-value=2.1e-09 Score=93.02 Aligned_cols=147 Identities=18% Similarity=0.161 Sum_probs=81.1
Q ss_pred ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i 204 (414)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|++++|...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3455433 35788888888876543 2356778888888887766321 1223456778888888777443211 13
Q ss_pred CCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCC
Q 015001 205 VNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL 279 (414)
Q Consensus 205 ~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 279 (414)
..+++|+.|+++++ .+..+. ..+++|++|+++++....+.. .+..+++|+.|++.++.+. ..+++|
T Consensus 97 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l 167 (208)
T 2o6s_A 97 DKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGI 167 (208)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTT
T ss_pred cCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCH
Confidence 45677777777766 333222 134556666665554222221 2445556666666555432 234555
Q ss_pred cEEecccc
Q 015001 280 EYLSMTKC 287 (414)
Q Consensus 280 ~~L~l~~c 287 (414)
+.|.++..
T Consensus 168 ~~L~~~~n 175 (208)
T 2o6s_A 168 RYLSEWIN 175 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=3e-09 Score=88.61 Aligned_cols=104 Identities=26% Similarity=0.232 Sum_probs=78.4
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+......+|..+..+++|++|++++|.+.....+..+++|+.|++++|.+... +...+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 589999998754333467887788999999999999887656778899999999999998442 4445667999999999
Q ss_pred eccCCcc--e-eecCCCCCCceEEEeec
Q 015001 194 RSCEGLE--S-LDLVNLSNLKEIILVNT 218 (414)
Q Consensus 194 ~~c~~~~--~-l~i~~l~~L~~L~l~~~ 218 (414)
++|.... . -.+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 9985432 1 13445566666666666
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=1.8e-08 Score=100.26 Aligned_cols=177 Identities=12% Similarity=-0.008 Sum_probs=110.3
Q ss_pred CcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeec
Q 015001 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~ 218 (414)
.+|+.|+++++.+...+. .-+++|++|+|++|.++. +. ..+++|+.|++++|.... +.. -..+|+.|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALIS--LP---ELPASLEYLDACDNRLST-LPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCCCCC-cch-hhcCCCEEECCCC
Confidence 589999999998764322 125889999999998852 22 457899999999885432 222 1138899999888
Q ss_pred CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccccccc
Q 015001 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSP 298 (414)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~~~~~ 298 (414)
.+..++..+++|+.|+++++....++. .+++|+.|++++|.+.. ++. +. ++|+.|+++++. +..++.-..
T Consensus 131 -~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~~~ 200 (571)
T 3cvr_A 131 -QLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAVPV 200 (571)
T ss_dssp -CCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCCC-
T ss_pred -cCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhHHH
Confidence 333333356788888888877333322 56788888888887665 333 22 778888888752 223332111
Q ss_pred cc-------ceEEeeccCCceEeeccCCCeeeEEEeCceeEEeccCCccceEEEEeecc
Q 015001 299 CL-------KTLILECCDKLIQVEIETPNLSIFKYHGDLISFSSNALSLSETSLCFSSH 350 (414)
Q Consensus 299 ~L-------~~L~l~~c~~l~~~~~~~p~L~~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 350 (414)
+| +.|++++|... .++ ..+.++++|+.|+++.|+.
T Consensus 201 ~L~~~~~~L~~L~Ls~N~l~-~lp----------------~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 201 RNHHSEETEIFFRCRENRIT-HIP----------------ENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -------CCEEEECCSSCCC-CCC----------------GGGGGSCTTEEEECCSSSC
T ss_pred hhhcccccceEEecCCCcce-ecC----------------HHHhcCCCCCEEEeeCCcC
Confidence 44 66666655321 111 1233467777777776643
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.74 E-value=2.8e-09 Score=92.14 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=107.2
Q ss_pred cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecC
Q 015001 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (414)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~ 219 (414)
+.++.+++.+...+ ....++|++|+++++.++.. ....+..+++|++|++++|...... .+..+++|+.|++++|
T Consensus 10 ~~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp TEEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-
Confidence 45555555543321 23356899999999987421 2233578999999999988543211 2456789999999988
Q ss_pred CCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccccc
Q 015001 220 DIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (414)
Q Consensus 220 ~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~ 294 (414)
.+..+. ..+++|++|+++++....+.. .+..+++|+.|+++++.+... ....+..+++|+.|+++++. +.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~----~~ 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP----WD 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCC----BC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCC----ee
Confidence 444333 256788999988876333322 257788899999988876641 22335667888888888852 22
Q ss_pred ccccccceEEeeccCCceEe
Q 015001 295 ISSPCLKTLILECCDKLIQV 314 (414)
Q Consensus 295 ~~~~~L~~L~l~~c~~l~~~ 314 (414)
..+++|+.|.++.+...+.+
T Consensus 162 ~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 162 CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CCTTTTHHHHHHHHHCTTTB
T ss_pred cCCCCHHHHHHHHHhCCcee
Confidence 34567777776665544444
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.74 E-value=6.9e-09 Score=105.02 Aligned_cols=204 Identities=16% Similarity=0.128 Sum_probs=107.7
Q ss_pred ccCcccceeEeeEEEcCh-HHHHHHHhCCCcccEEEeeccCCcce-eecCCCCCCceEEEeecCCCc----eEeeeccce
Q 015001 158 VKLFSLRKLALREVCADD-QAIASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIK----RVEIKTSNV 231 (414)
Q Consensus 158 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~~p~Le~L~l~~c~~~~~-l~i~~l~~L~~L~l~~~~~l~----~~~~~~p~L 231 (414)
..+++|+.|+++++.+.. .........+++|+.|++..+..... ..+..+++|+.+++..+.... ......+++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 345556666655544311 11111123455566665554432211 122335666666665541100 111234566
Q ss_pred eeeEeeeecc-cceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccccccccc---cccccccceEEeec
Q 015001 232 NALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILEC 307 (414)
Q Consensus 232 ~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l---~~~~~~L~~L~l~~ 307 (414)
+.++++.+.. ......+..+++|+.|+++++.......+..+..+++|+.|+|+++...... ...+++|+.|++++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 6666665541 1112234567788888887766444333444667788888888886322221 23567888888887
Q ss_pred cCCceEe---eccCCCeeeEEEeCcee-----EEeccC-CccceEEEEeecchhh-hHHHHHHH
Q 015001 308 CDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHLMV-NIEWVVEY 361 (414)
Q Consensus 308 c~~l~~~---~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l~~~~~~~~-~~~~~~~~ 361 (414)
|....-. ....++|+.|++.++.. ..+.+. ++|+.|+++.|+-... ...||...
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~w 591 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQW 591 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHH
Confidence 7432111 12446788888877765 334455 6899999988853321 23455443
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.72 E-value=3.1e-09 Score=86.65 Aligned_cols=104 Identities=30% Similarity=0.310 Sum_probs=78.3
Q ss_pred CCCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEe
Q 015001 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l 193 (414)
+++++|++..+......+|..+..+++|++|++++|.+........+++|++|++++|.++.. +...+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 478888887754332467887788999999999999887666778899999999999988543 4455677999999999
Q ss_pred eccCCcce---eecCCCCCCceEEEeec
Q 015001 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (414)
Q Consensus 194 ~~c~~~~~---l~i~~l~~L~~L~l~~~ 218 (414)
++|..... -.+..+++|+.|++++|
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99864331 23445667777777666
No 113
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.67 E-value=1.5e-08 Score=95.11 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=81.5
Q ss_pred HHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceEEEeecCCCce-----Ee-eeccceeeeEeeeec---c-cc-e-
Q 015001 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKR-----VE-IKTSNVNALAIHQTY---L-FP-I- 244 (414)
Q Consensus 177 ~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L~l~~~~~l~~-----~~-~~~p~L~~L~l~~~~---~-~~-~- 244 (414)
.+..++..+|+|++|.|.+|....-..+. +++|++|++..| .+.. +. ..+|+|++|+++... . .. +
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 35567889999999999887433211222 589999999877 2321 11 157999999885321 0 10 0
Q ss_pred ----eeeccccccCceeEeeccCCchHHHHhhh--ccCCCCcEEeccccccccc-----cc---ccccccceEEeeccC
Q 015001 245 ----EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTS-----VR---ISSPCLKTLILECCD 309 (414)
Q Consensus 245 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~~~~-----l~---~~~~~L~~L~l~~c~ 309 (414)
......+|+|+.|++.++.+.+.....+. ..+|+|++|+|+.+. +.. +. ..+++|+.|+++.|.
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11123578999999988888764433322 357888888887642 222 22 245777888877664
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.65 E-value=2.7e-08 Score=87.42 Aligned_cols=132 Identities=15% Similarity=0.134 Sum_probs=70.2
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
...+|..+. ++|++|++++|.+... ..+..+++|+.|+|+++.++.-. ...+..+++|+.|++++|...... .
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhH
Confidence 345555433 7788888888876543 44567778888888877762111 122456777777777776432211 1
Q ss_pred cCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeeccccee-eeccccccCceeEeeccC
Q 015001 204 LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLP 263 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~ 263 (414)
+..+++|+.|+++++ .+..++ ..+++|++|+++++....+. ..+..+++|+.|++.++.
T Consensus 108 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 108 FDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred hCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 334566666666666 232222 13344555555544422111 123444455555554444
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.64 E-value=7.7e-09 Score=86.88 Aligned_cols=127 Identities=13% Similarity=0.073 Sum_probs=69.3
Q ss_pred ccCCCcccEEEecCcccCCCCccccCc-ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCceE
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI 213 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~L 213 (414)
...+.+|++|++++|.+...+....+. +|+.|++++|.++.- ..+..+++|++|++++|..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l--------------- 76 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI--------------- 76 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC---------------
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc---------------
Confidence 445677888888887665433333333 666666666655321 1234455555555555432
Q ss_pred EEeecCCCceEe----eeccceeeeEeeeecccceee--eccccccCceeEeeccCCchH--HHHhhhccCCCCcEEecc
Q 015001 214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMT 285 (414)
Q Consensus 214 ~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~ 285 (414)
..+. ..+++|++|+++++....++. .+..+++|+.|+++++.+... .....+..+|+|+.|+++
T Consensus 77 --------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 77 --------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp --------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred --------cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 2222 134555555555554222222 456677777777777766531 111235667888888877
Q ss_pred cc
Q 015001 286 KC 287 (414)
Q Consensus 286 ~c 287 (414)
.+
T Consensus 149 ~n 150 (176)
T 1a9n_A 149 KV 150 (176)
T ss_dssp EC
T ss_pred cC
Confidence 75
No 116
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.64 E-value=1.4e-08 Score=85.21 Aligned_cols=102 Identities=13% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeee-ccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001 208 SNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVN-VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (414)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (414)
++|+.|++++| .+..+. ..+++|++|+++++....++.. +..+++|+.|+++++.+..-.....+..+++|+.|++
T Consensus 42 ~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp TCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCCEEECCCC-CCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 36666666666 333332 1468899999998874444433 4789999999999999865221125678999999999
Q ss_pred cccccc--cc----ccccccccceEEeeccCC
Q 015001 285 TKCHKL--TS----VRISSPCLKTLILECCDK 310 (414)
Q Consensus 285 ~~c~~~--~~----l~~~~~~L~~L~l~~c~~ 310 (414)
+++... .. +...+++|+.|+++.+..
T Consensus 121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred cCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 996432 22 234789999999888754
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.63 E-value=3.3e-08 Score=86.26 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=76.9
Q ss_pred ccccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--
Q 015001 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (414)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l-- 202 (414)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.++... ...+..+++|++|++++|....--
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHh
Confidence 3445565443 6788888888876432 35667788888888887763221 122566788888888877543111
Q ss_pred ecCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccceee-eccccccCceeEeeccCC
Q 015001 203 DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPI 264 (414)
Q Consensus 203 ~i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 264 (414)
.+..+++|+.|+++++ .+..+. ..+++|++|+++++....+.. .+..+++|+.|++.++.+
T Consensus 99 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 1344677777777776 333222 134566666666555222221 244555666666655543
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=4.2e-09 Score=90.34 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=81.6
Q ss_pred CCeEEEEEecCCccccCCccccCCCcccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEee
Q 015001 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~ 194 (414)
.++...+....+....+|..+..+++|++|++++|.+...+....+++|+.|++++|.++. +...+..+|+|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECc
Confidence 3444444433334445555677778888888888776544466667788888888877641 22233445666666666
Q ss_pred ccCCcceeecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeeccccee--eeccccccCceeEeeccCCchH-----
Q 015001 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDE----- 267 (414)
Q Consensus 195 ~c~~~~~l~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~----- 267 (414)
+|....--.+. .+++|++|+++++....+. ..+..+++|++|++.++.+...
T Consensus 102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 65321100111 2445555555555422111 2456677777777777765432
Q ss_pred ----HHHhhhccCCCCcEEe
Q 015001 268 ----WLCNGISKLPLLEYLS 283 (414)
Q Consensus 268 ----~~~~~~~~~~~L~~L~ 283 (414)
.....+..+++|+.|+
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC
T ss_pred chHHHHHHHHHhCCCcEEEC
Confidence 1123356677777776
No 119
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.61 E-value=4.3e-08 Score=81.30 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=73.9
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEE-cChHHHHHHHhC---CCcccEEEeeccCCcce
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISG---CPLIEYLEIRSCEGLES 201 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---~p~Le~L~l~~c~~~~~ 201 (414)
...+|........|++|++++|.+... .....+++|++|+|++|. +++..+..+... |++|++|+|++|..+..
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 345666444456899999999986443 345789999999999997 599999987653 68999999999987743
Q ss_pred e---ecCCCCCCceEEEeecCCCce
Q 015001 202 L---DLVNLSNLKEIILVNTSDIKR 223 (414)
Q Consensus 202 l---~i~~l~~L~~L~l~~~~~l~~ 223 (414)
- .+..+++|++|++++|+.+..
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 2 345679999999999976654
No 120
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=2.7e-07 Score=86.56 Aligned_cols=197 Identities=14% Similarity=0.137 Sum_probs=111.7
Q ss_pred HHHHHHHHhccccCCCCeeeEEEEEecCCCC--CChhhHHHHHHH-HHhCCCeEEEEEecCCc--------cccCCcccc
Q 015001 68 LTSLEPALLNRQRKMISIKKFSLELDLINSP--ENASLAGRCLGL-AIESEVKELVLVHWRSE--------RRNLPEIIF 136 (414)
Q Consensus 68 ~~~v~~~l~~~~~~~~~l~~l~l~~~~~~~~--~~~~~i~~~l~~-~~~~~l~~L~l~~~~~~--------~~~lp~~~~ 136 (414)
.+.+.+++ .......++.+.+.... ++ .....++.++.. ...++|++|.+...... ...+...+.
T Consensus 94 ~~~~~~fl--~~~~~~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~ 169 (362)
T 2ra8_A 94 VNLMDKIL--KDKKLPSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLD 169 (362)
T ss_dssp CCHHHHHH--HCTTGGGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHH
T ss_pred HHHHHHHh--cCCCchhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHh
Confidence 34445555 22223456666655322 22 111344444432 23579999988542111 112445556
Q ss_pred CCCcccEEEecCcc-cCCCCccccCcccceeEeeEEEcChHHHHHHHh-CCCcccEEEeeccCC-------cce----ee
Q 015001 137 YVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEG-------LES----LD 203 (414)
Q Consensus 137 ~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~c~~-------~~~----l~ 203 (414)
.+++|++|.++++. +..+. ...++|++|+|..+.++...+..+.. .+|+|+.|.|..+.. ... +.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 67999999998873 33222 24899999999988888777776543 799999999864211 100 11
Q ss_pred cCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhh---hccCCCCc
Q 015001 204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG---ISKLPLLE 280 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~ 280 (414)
...+|+|+.|.+.+|. +..-. .......+.+|+|++|+++.+.+.+.....+ +..+++|+
T Consensus 248 ~~~~p~Lr~L~L~~~~-i~~~~----------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~ 310 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAE-EQNVV----------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310 (362)
T ss_dssp TTTCTTCCEEEEESCT-THHHH----------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCS
T ss_pred cCCCCCcCEEeCCCCC-CchHH----------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcce
Confidence 1234666666666551 11000 0000111346778888887777776543333 24567888
Q ss_pred EEecccc
Q 015001 281 YLSMTKC 287 (414)
Q Consensus 281 ~L~l~~c 287 (414)
.|+++.|
T Consensus 311 ~L~L~~n 317 (362)
T 2ra8_A 311 FINMKYN 317 (362)
T ss_dssp EEECCSB
T ss_pred EEECCCC
Confidence 8888776
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.55 E-value=5.1e-08 Score=91.83 Aligned_cols=144 Identities=20% Similarity=0.216 Sum_probs=71.3
Q ss_pred CcccEEEecCcccCCC--Cccc-cCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCce
Q 015001 139 ESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE 212 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~ 212 (414)
..++.|+|+++.+... ..+. .+++|+.|+|+++.++.-.. ..+..+++|++|+|++|... .+ .+..+++|+.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCE
Confidence 3466666666655322 2233 56666666666665522111 12445666666666666432 22 2344566666
Q ss_pred EEEeecCCCceEe----eeccceeeeEeeeecccceeeec----cccccCceeEeeccCCchHHHHhhhccCCC--CcEE
Q 015001 213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNV----SSCGNLKCLKFDFLPIEDEWLCNGISKLPL--LEYL 282 (414)
Q Consensus 213 L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L 282 (414)
|++++| .+..+. ..+++|+.|+++++....++... ..+++|+.|+++++.+..-.. ..+..++. ++.|
T Consensus 117 L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l 194 (361)
T 2xot_A 117 LLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGL 194 (361)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTE
T ss_pred EECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceE
Confidence 666666 333332 13466666666665532222221 346666666666666543111 11233443 2556
Q ss_pred eccc
Q 015001 283 SMTK 286 (414)
Q Consensus 283 ~l~~ 286 (414)
++++
T Consensus 195 ~l~~ 198 (361)
T 2xot_A 195 YLHN 198 (361)
T ss_dssp ECCS
T ss_pred EecC
Confidence 6555
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.55 E-value=5.5e-08 Score=84.79 Aligned_cols=132 Identities=20% Similarity=0.177 Sum_probs=74.9
Q ss_pred ccCCccccCCCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
..+|..+. ..+++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|++|++++|...... .
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence 34565442 4567888888766432 23567788888888877663211 112566777888888777543211 2
Q ss_pred cCCCCCCceEEEeecCCCceEe----eeccceeeeEeeeecccce-eeeccccccCceeEeeccCC
Q 015001 204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 264 (414)
+..+++|+.|+++++ .+..+. ..+++|++|+++++....+ +..+..+++|+.|+++++.+
T Consensus 101 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 101 FKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp GTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred hcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 445677777777766 232221 1345666666665542222 23445556666666665554
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.55 E-value=6e-08 Score=85.11 Aligned_cols=141 Identities=11% Similarity=0.021 Sum_probs=94.3
Q ss_pred ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCceEEEee
Q 015001 141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN 217 (414)
Q Consensus 141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~ 217 (414)
-+.++.++..+...+. .-.++|+.|+|+++.+.... ...+..+++|++|++++|... .+ .+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 4567777776643322 22489999999999884321 123578899999999998653 22 245678899999988
Q ss_pred cCCCceEe----eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 218 TSDIKRVE----IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 218 ~~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
| .+..+. ..+++|++|+++++....++..+..+++|+.|+++++.+..- ....+..+++|+.|++++
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred C-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeC
Confidence 8 444433 246778888888777445555667777888888877776531 113355677777777776
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=9.9e-09 Score=87.99 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=62.6
Q ss_pred CCCCceEEEeec--CCCceEeeeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEec
Q 015001 207 LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (414)
Q Consensus 207 l~~L~~L~l~~~--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (414)
+++|+.|++++| ..+......+++|++|+++++....++ .+..+++|+.|+++++.+..-.....+..+++|+.|++
T Consensus 69 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 69 MENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 345555555555 122222224578888888887743333 57788999999999998876433345778999999999
Q ss_pred cccccccc-------------ccccccccceEE
Q 015001 285 TKCHKLTS-------------VRISSPCLKTLI 304 (414)
Q Consensus 285 ~~c~~~~~-------------l~~~~~~L~~L~ 304 (414)
+++..... ....+++|+.|+
T Consensus 148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 98633222 123567777775
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.51 E-value=4.5e-08 Score=85.37 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=85.1
Q ss_pred cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecC
Q 015001 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (414)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~ 219 (414)
+.++++++.+...+. .-.+.++.|+|+++.++.......+..+++|++|++++|...... .+..+++|+.|+++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-
Confidence 578888887654321 224567899999887743322233567889999999887543211 3556788888888877
Q ss_pred CCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 220 DIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 220 ~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
.+..+.. .+++|++|+++++....+ +..+..+++|+.|+++++.+.... +..+..+++|+.|++++
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecC
Confidence 3333321 456677777766652222 234556667777777666654311 22344566666666665
No 126
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.49 E-value=3.7e-07 Score=92.20 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=68.2
Q ss_pred ccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccccccccc----ccccccccceEEeeccCCceEee---ccCCC
Q 015001 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS----VRISSPCLKTLILECCDKLIQVE---IETPN 320 (414)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~----l~~~~~~L~~L~l~~c~~l~~~~---~~~p~ 320 (414)
+..+++++.++++.+.+... .......+++|+.|+++++..... ....+++|+.|++++|....-.+ ...++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTCTTCCEEECTTSCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccccccccccccccccc-cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 45566777777766655432 223356678899999988654333 23367889999999885432222 34578
Q ss_pred eeeEEEeCcee-----EEeccCCccceEEEEeec
Q 015001 321 LSIFKYHGDLI-----SFSSNALSLSETSLCFSS 349 (414)
Q Consensus 321 L~~l~~~~~~~-----~~~~~~~~L~~L~l~~~~ 349 (414)
|+.|.+.++.. ..+.++++|+.|+++.+.
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 89998888765 456778999999998773
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.47 E-value=3e-09 Score=106.19 Aligned_cols=171 Identities=18% Similarity=0.137 Sum_probs=113.1
Q ss_pred cCCCcccEEEecCcccC-CCCccccCcccceeEeeEEEc------------ChHHHHHHHhCCCcccEEE-eeccCC--c
Q 015001 136 FYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L 199 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~------------~~~~l~~ll~~~p~Le~L~-l~~c~~--~ 199 (414)
..+++|+.|+++++.+. .|...+.+++|+.|+++++.. ........+..+++|+.|+ +..+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45788889999988764 235677888888888865531 1123344566777777777 333211 0
Q ss_pred cee-----ecCC--CCCCceEEEeecCCCceEe--eeccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHH
Q 015001 200 ESL-----DLVN--LSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (414)
Q Consensus 200 ~~l-----~i~~--l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (414)
..+ .+.. ...|+.|++++| .+..++ ..+++|+.|+++++....++..++++++|+.|++++|.+.. ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 0110 146888888888 333322 35778899999888755666678888999999999888876 34
Q ss_pred hhhccCCCCcEEecccccccc----cccccccccceEEeeccCC
Q 015001 271 NGISKLPLLEYLSMTKCHKLT----SVRISSPCLKTLILECCDK 310 (414)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~~~----~l~~~~~~L~~L~l~~c~~ 310 (414)
.+..+++|+.|+++++.... .....+++|+.|++++|..
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 47788999999998863222 2223678899999988764
No 128
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.46 E-value=1.1e-07 Score=82.94 Aligned_cols=141 Identities=11% Similarity=0.081 Sum_probs=82.4
Q ss_pred cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCcce--eecCCCCCCceEEEeecC
Q 015001 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTS 219 (414)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~--l~i~~l~~L~~L~l~~~~ 219 (414)
+.++.+++.+...+.. -.++|+.|+++++.+..-. ...+..+++|++|++++|..... -.+..+++|+.|+++++
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 5677777665432221 1268999999988773211 11356788899999888854321 13556788888888877
Q ss_pred CCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 220 DIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 220 ~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
.+..+.. .+++|++|+++++....+ +..+..+++|+.|+++++.+..-. ...+..+++|+.|++++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCC
Confidence 3333332 356677777766652222 223556666677776666654311 12244456666666665
No 129
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=9.1e-09 Score=97.21 Aligned_cols=35 Identities=14% Similarity=0.147 Sum_probs=15.0
Q ss_pred ccceeEeeEEEcChHHHHHHHhCCCcccEEEeecc
Q 015001 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (414)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c 196 (414)
+|+.|+|++|.+++..+..+...+++|++|+|++|
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 44444444444444444333333444444444444
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.37 E-value=2.8e-07 Score=86.68 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=107.4
Q ss_pred cEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHh-CCCcccEEEeeccCCccee---ecCCCCCCceEEEee
Q 015001 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVN 217 (414)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~-~~p~Le~L~l~~c~~~~~l---~i~~l~~L~~L~l~~ 217 (414)
+.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|++|+|++|... .+ .+..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 577888876654321 2235689999999987432222 234 7899999999988543 33 356689999999999
Q ss_pred cCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhh---ccCCCCcEEecccccc
Q 015001 218 TSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHK 289 (414)
Q Consensus 218 ~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~ 289 (414)
+ .+..+.. .+++|++|+++++....+ +..+.++++|++|+++++.+..-. ...+ ..+++|+.|+|+++.
T Consensus 98 N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~- 174 (361)
T 2xot_A 98 N-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNK- 174 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSC-
T ss_pred C-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCC-
Confidence 8 5555543 468899999998873322 335778899999999988876511 1112 468899999998852
Q ss_pred cccccc----cccc--cceEEeeccC
Q 015001 290 LTSVRI----SSPC--LKTLILECCD 309 (414)
Q Consensus 290 ~~~l~~----~~~~--L~~L~l~~c~ 309 (414)
+..++. .++. |+.|++++|+
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCccCHHHhhhccHhhcceEEecCCC
Confidence 333321 3343 4677777754
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=4.6e-07 Score=84.07 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=6.2
Q ss_pred CCCeEEEEEe
Q 015001 114 SEVKELVLVH 123 (414)
Q Consensus 114 ~~l~~L~l~~ 123 (414)
++++.|+|+.
T Consensus 49 ~~L~~LdLs~ 58 (329)
T 3sb4_A 49 PSLKVLDISN 58 (329)
T ss_dssp TTCCEEEEEE
T ss_pred ccCeEEecCc
Confidence 4666666665
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=3.4e-08 Score=93.26 Aligned_cols=162 Identities=18% Similarity=0.187 Sum_probs=102.0
Q ss_pred HHHhCCCeEEEEEecCCcc---ccCCccccC-CCcccEEEecCcccCCC---CccccCcccceeEeeEEEcChHHHHHH-
Q 015001 110 LAIESEVKELVLVHWRSER---RNLPEIIFY-VESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASL- 181 (414)
Q Consensus 110 ~~~~~~l~~L~l~~~~~~~---~~lp~~~~~-~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l- 181 (414)
..+.+++++|++..+.-.. ..+...+.. +++|++|+|++|.+... .....+++|+.|+|++|.+++.....+
T Consensus 68 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 68 AEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 3455789999987643221 122233332 37999999999987532 233456789999999999977665543
Q ss_pred --H-hCCCcccEEEeeccCCcc----ee--ecCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccceeeeccccc
Q 015001 182 --I-SGCPLIEYLEIRSCEGLE----SL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCG 252 (414)
Q Consensus 182 --l-~~~p~Le~L~l~~c~~~~----~l--~i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~ 252 (414)
+ ..+++|++|+|++|.... .+ .+...++|++|++++| .+.... ...+...+...+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g---------------~~~L~~~L~~~~ 211 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEG---------------LELLAAQLDRNR 211 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHH---------------HHHHHHHGGGCS
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHH---------------HHHHHHHHhcCC
Confidence 3 357889999999985431 11 1233567777777766 222110 001122344566
Q ss_pred cCceeEeeccCCchHH---HHhhhccCCCCcEEecccc
Q 015001 253 NLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 253 ~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (414)
+|++|++++|.+++.. +...+..+++|++|+|+++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 8888888888887654 3344556788888888886
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.21 E-value=1.1e-06 Score=74.76 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=54.8
Q ss_pred ccCCccccCCCcccEEEecCcccCCCC---ccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
..+|..+. .+|++|+++++.+.... .+..+++|++|+|+++.++... ...+..+++|++|++++|...... .
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence 34554433 26667777766554321 2455666666666666552211 112344555555555555332111 1
Q ss_pred cCCCCCCceEEEeecCCCceEeeeccceeeeEeeeecccc-eeeeccccccCceeEeeccCCc
Q 015001 204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE 265 (414)
Q Consensus 204 i~~l~~L~~L~l~~~~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (414)
+..+++ |++|+++++.... .+..+..+++|+.|+++++.+.
T Consensus 98 ~~~l~~---------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQ---------------------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTT---------------------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCC---------------------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 223344 4444444443111 1234556677777777766654
No 134
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=1.2e-06 Score=72.58 Aligned_cols=83 Identities=13% Similarity=0.038 Sum_probs=50.1
Q ss_pred ceeeeEeeeecc-cceeeeccccccCceeEeeccC-CchHHHHhhhcc---CCCCcEEeccccccccccc----cccccc
Q 015001 230 NVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVR----ISSPCL 300 (414)
Q Consensus 230 ~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~~~~l~----~~~~~L 300 (414)
+|++|+++++.. ..-...+.++++|++|++++|. +++..+..+... +++|++|+|++|..+++-. ..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 455555555541 1111234567777777777764 666666664442 4577888887776554422 256777
Q ss_pred ceEEeeccCCce
Q 015001 301 KTLILECCDKLI 312 (414)
Q Consensus 301 ~~L~l~~c~~l~ 312 (414)
++|++++|..+.
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777777654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.16 E-value=9.9e-07 Score=87.94 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=79.4
Q ss_pred ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe--eeccceeeeEee
Q 015001 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIH 237 (414)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~--~~~p~L~~L~l~ 237 (414)
.|+.|+|++|.++. +.. +..+++|+.|++++|... .+ .+..+++|+.|++++| .+..++ ..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN-ALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC-CCCCCcccCCCCCCcEEECC
Confidence 47777777776632 223 567777888888777543 22 3555778888888877 333332 256788888888
Q ss_pred eecccce--eeeccccccCceeEeeccCCchH--HHHhhhccCCCCcEEec
Q 015001 238 QTYLFPI--EVNVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSM 284 (414)
Q Consensus 238 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l 284 (414)
++....+ +..++.+++|+.|++++|.+.+. ....+...+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8774444 56788899999999999887652 22334556899998864
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.14 E-value=1.3e-07 Score=97.22 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccCceeEeeccCCch
Q 015001 207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 207 l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (414)
+++|+.|++++| .+..++ ..+++|++|+++++....++..++.+++|+.|+|++|.+.+
T Consensus 269 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 269 LSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp GTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 444455554444 222222 13566666666666544455567788888888888888765
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.11 E-value=3.2e-06 Score=71.81 Aligned_cols=102 Identities=16% Similarity=0.126 Sum_probs=73.3
Q ss_pred CCCeEEEEEecCCccccCCc--cccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCccc
Q 015001 114 SEVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (414)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le 189 (414)
.++++|++.... ...++. .+..+++|++|+++++.+... ..+..+++|++|+|+++.++.... ..+..+++|+
T Consensus 29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~ 105 (192)
T 1w8a_A 29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLK 105 (192)
T ss_dssp TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCC
T ss_pred CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCC
Confidence 388999887642 334554 367789999999999987643 567889999999999998843221 2256789999
Q ss_pred EEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (414)
Q Consensus 190 ~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~ 218 (414)
+|++++|...... .+..+++|+.|+++++
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred EEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 9999998654321 3445667777777665
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.05 E-value=4e-06 Score=71.30 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=17.9
Q ss_pred cceeeeEeeeecccceee-eccccccCceeEeeccCC
Q 015001 229 SNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPI 264 (414)
Q Consensus 229 p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~ 264 (414)
++|++|+++++....++. .+..+++|+.|++.++.+
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 445555554444222222 245566667777666554
No 139
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.05 E-value=1.5e-06 Score=77.95 Aligned_cols=38 Identities=37% Similarity=0.678 Sum_probs=34.9
Q ss_pred CccCCCCCHHHHHHHhccCChHHHH-HhhhcccCchhhc
Q 015001 9 VDGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVW 46 (414)
Q Consensus 9 ~D~i~~LPdeiL~~Ils~L~~~d~~-~~~~VskrW~~lw 46 (414)
...+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 3578899999999999999999999 9999999999863
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.01 E-value=6e-06 Score=70.18 Aligned_cols=109 Identities=18% Similarity=0.065 Sum_probs=70.8
Q ss_pred cccCCccccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i 204 (414)
...+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+.++++|++|++++|...... .+
T Consensus 22 l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f 98 (193)
T 2wfh_A 22 LKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTF 98 (193)
T ss_dssp CSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHh
Confidence 345555432 5788888888766533 45667788888888887773211 122567788888888877543211 24
Q ss_pred CCCCCCceEEEeecCCCceEee----eccceeeeEeeeec
Q 015001 205 VNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY 240 (414)
Q Consensus 205 ~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~ 240 (414)
..+++|+.|+++++ .+..+.. .+++|++|+++++.
T Consensus 99 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 55788888888887 4444432 46788888888876
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.01 E-value=6.1e-06 Score=68.95 Aligned_cols=106 Identities=19% Similarity=0.103 Sum_probs=55.4
Q ss_pred CcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEE
Q 015001 139 ESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (414)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~ 214 (414)
++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|++++|...... .+..+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l------- 99 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKL------- 99 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-------
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHhhCC-------
Confidence 5677777777765432 2245666677777766655311 1112345566666666655332111 12223
Q ss_pred EeecCCCceEeeeccceeeeEeeeecccceee-eccccccCceeEeeccCCch
Q 015001 215 LVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (414)
Q Consensus 215 l~~~~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (414)
++|++|+++++....++. .+..+++|++|+++++.+..
T Consensus 100 --------------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 100 --------------TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp --------------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred --------------cccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 445555554444222222 24567788888888777653
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=3.9e-06 Score=70.13 Aligned_cols=123 Identities=12% Similarity=0.023 Sum_probs=72.4
Q ss_pred ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001 141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (414)
Q Consensus 141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~ 218 (414)
.+.++++++.+...+ ....++|+.|+++++.++.- ....+..+++|++|++++|...... .+..++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT---------- 76 (177)
T ss_dssp TTEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT----------
T ss_pred CCEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCC----------
Confidence 466777776654322 22346788888887766321 1122456677777777766432110 122334
Q ss_pred CCCceEeeeccceeeeEeeeecccceee-eccccccCceeEeeccCCchHHHHhhhccCCCCcEEecccc
Q 015001 219 SDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (414)
+|++|+++++....++. .+..+++|+.|+++++.+.. .....+..+++|+.|+++++
T Consensus 77 -----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 77 -----------KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp -----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSS
T ss_pred -----------ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCC
Confidence 44555554444222222 35778999999999998764 22234567899999999985
No 143
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.00 E-value=8e-07 Score=78.75 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=32.3
Q ss_pred cCCCCCHHHHHHHhccCChHHHHHhhhcccCchh
Q 015001 11 GISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQ 44 (414)
Q Consensus 11 ~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~ 44 (414)
.+++||+||+.+||+||+.+|+++++.|||+||.
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~ 37 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE 37 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999996
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.00 E-value=1.6e-06 Score=89.20 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=76.9
Q ss_pred HHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeecCCCceEe---eeccceeeeEeeeecccceeeeccccccC
Q 015001 180 SLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (414)
Q Consensus 180 ~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 254 (414)
..+..++.|+.|+|++|... .+ .+..+++|+.|++++| .+..++ ..+++|++|+++++....++..++++++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 34567788888888877543 22 2335688888888887 344433 26789999999998855667778899999
Q ss_pred ceeEeeccCCchHHHHhhhccCCCCcEEecccccc
Q 015001 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (414)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (414)
+.|+|++|.+.. ++..+..+++|+.|+|+++..
T Consensus 296 ~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 296 KYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp SEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred CEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence 999999988763 444477889999999998643
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=2.2e-05 Score=72.55 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred CCCCceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCc-eeEeeccCCchHHHHhhhccCCCCc
Q 015001 207 LSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLE 280 (414)
Q Consensus 207 l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~ 280 (414)
+++|+.+++..+ .+..+.. .+++|+++.+..+- ..+ ...|.+|++|+ .+++.. .+.. .-...+..|++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni-~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNL-KTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCccc-ceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCC
Confidence 578888888876 4555553 46788888887653 111 12467788888 888865 3221 0112356788899
Q ss_pred EEeccccccccccc----ccccccceEE
Q 015001 281 YLSMTKCHKLTSVR----ISSPCLKTLI 304 (414)
Q Consensus 281 ~L~l~~c~~~~~l~----~~~~~L~~L~ 304 (414)
.+++... .+..+. ..+++|+.+.
T Consensus 301 ~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred EEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 9888552 223332 2566777664
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.82 E-value=3.9e-05 Score=72.98 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=102.4
Q ss_pred CcccEEEecCcccC-CCCccccCcccceeEeeEEEc---ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCCc
Q 015001 139 ESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLK 211 (414)
Q Consensus 139 ~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~---~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L~ 211 (414)
.+|+.+.+...-.. ....+..|++|+.+++.++.+ ....+ .|.+|+++.+..+ +..+ .+.++++|+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence 35666666542111 114456667777777765433 22222 2567777776533 2222 344567777
Q ss_pred eEEEeecCCCceEee---eccceeeeEeeeecccceeeeccccccCceeEeeccCCchH----HHHhhhccCCCCcEEec
Q 015001 212 EIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE----WLCNGISKLPLLEYLSM 284 (414)
Q Consensus 212 ~L~l~~~~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l 284 (414)
.+.+.. .+..+.. ...+|+++.+......--...|.+|++|+.+.+.++..... .-...+..|++|+.+.+
T Consensus 230 ~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 230 TIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 777764 3444432 22567777774332000022466788888888876543210 11223566888888888
Q ss_pred cccccccccc----ccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee-----EEeccC-CccceEEEEe
Q 015001 285 TKCHKLTSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCF 347 (414)
Q Consensus 285 ~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~-----~~~~~~-~~L~~L~l~~ 347 (414)
.. .+..+. ..|++|+.+.+..+ +..+ ...+ +|+++.+.+... ..+.++ ..++++.+..
T Consensus 308 ~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 308 PE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred CC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 75 233333 25677888877543 3332 2233 677777766543 223333 3566666633
No 147
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.77 E-value=3.4e-06 Score=81.63 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=38.0
Q ss_pred CCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhhccc
Q 015001 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (414)
Q Consensus 7 ~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~lw~~ 48 (414)
-..|.|+.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999999999999976544
No 148
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.59 E-value=2.9e-05 Score=74.68 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=37.0
Q ss_pred cCCCccCCCCCHHHHHHHhccCChHHHHHhhhcccCchhh
Q 015001 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (414)
Q Consensus 6 ~~~~D~i~~LPdeiL~~Ils~L~~~d~~~~~~VskrW~~l 45 (414)
....|.++.||+|++.+||+||+.+|++++++|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 4567999999999999999999999999999999999863
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.58 E-value=6e-05 Score=62.44 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=46.9
Q ss_pred cccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--e
Q 015001 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (414)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~ 203 (414)
...+|..+. ++|++|+++++.+... ..+..+++|++|+|++|.++.- ....+..+++|++|+|++|...... .
T Consensus 21 l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 97 (170)
T 3g39_A 21 LASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKSIPRGA 97 (170)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCEeCHHH
Confidence 334554442 6677777777766433 3456677777777777666311 1122355666666666666432111 1
Q ss_pred cCCCCCCceEEEeec
Q 015001 204 LVNLSNLKEIILVNT 218 (414)
Q Consensus 204 i~~l~~L~~L~l~~~ 218 (414)
+..+++|+.|+++++
T Consensus 98 ~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 98 FDNLKSLTHIWLLNN 112 (170)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEEeCCC
Confidence 333455555555544
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.52 E-value=8.7e-05 Score=61.72 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=47.3
Q ss_pred ccCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee--ec
Q 015001 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (414)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i 204 (414)
..+|..+. ++|++|+++++.+... ..+..+++|+.|+|++|.++.- ....+..+++|+.|+|++|....-. .+
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~ 101 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAF 101 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHh
Confidence 45555443 6777777777766433 3456677777777777766321 1112345666666666665432111 13
Q ss_pred CCCCCCceEEEeec
Q 015001 205 VNLSNLKEIILVNT 218 (414)
Q Consensus 205 ~~l~~L~~L~l~~~ 218 (414)
..+++|+.|+++++
T Consensus 102 ~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 102 DNLKSLTHIYLYNN 115 (174)
T ss_dssp TTCTTCSEEECCSS
T ss_pred ccccCCCEEEeCCC
Confidence 33455555555544
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=4e-05 Score=64.52 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=21.4
Q ss_pred ccccccCceeEe--eccCCchHH---HHhhhccCCCCcEEecccc
Q 015001 248 VSSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (414)
Q Consensus 248 ~~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (414)
+...++|++|++ .++.+.+.. +...+...++|+.|+++++
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 344456666666 556665543 3333444556666666554
No 152
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.50 E-value=1.5e-05 Score=76.61 Aligned_cols=38 Identities=37% Similarity=0.587 Sum_probs=35.9
Q ss_pred CCCccCCCCCHH----HHHHHhccCChHHHHHhhhcccCchh
Q 015001 7 LEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQ 44 (414)
Q Consensus 7 ~~~D~i~~LPde----iL~~Ils~L~~~d~~~~~~VskrW~~ 44 (414)
-..|+++.||+| ++.+||+||+.++++++++|||+|++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~ 47 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR 47 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 457999999999 99999999999999999999999995
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.17 E-value=0.00029 Score=58.25 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=6.9
Q ss_pred cccccCceeEeeccCC
Q 015001 249 SSCGNLKCLKFDFLPI 264 (414)
Q Consensus 249 ~~~~~L~~L~l~~~~~ 264 (414)
.++++|+.|+++++.+
T Consensus 51 ~~l~~L~~L~Ls~N~l 66 (170)
T 3g39_A 51 DRLTQLTRLDLDNNQL 66 (170)
T ss_dssp TTCTTCSEEECCSSCC
T ss_pred cCcccCCEEECCCCCc
Confidence 3444444444444443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.02 E-value=6.2e-05 Score=63.33 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=33.1
Q ss_pred CCCcccEEEecCc-ccCCC------CccccCcccceeEeeEEEcChHHH---HHHHhCCCcccEEEeeccCC
Q 015001 137 YVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVCADDQAI---ASLISGCPLIEYLEIRSCEG 198 (414)
Q Consensus 137 ~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~~~~~~l---~~ll~~~p~Le~L~l~~c~~ 198 (414)
.+++|++|+|++| .+... ......++|++|+|++|.+++... ...+..++.|++|+|++|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3455666666665 44321 122334566666666666654432 33345556667776666643
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.95 E-value=0.0009 Score=63.49 Aligned_cols=178 Identities=14% Similarity=0.172 Sum_probs=112.7
Q ss_pred CCeEEEEEecCCccccCCc-cccCCCcccEEEecCcccCCC-CccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccE
Q 015001 115 EVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEY 190 (414)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~ 190 (414)
+++++.+.. ....++. .+..|.+|+.+++..+.+... .....+.+|+.+.|...-. ... .+.+|++|++
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTT----TTTTCTTCCC
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhh----HhhCCCCCCE
Confidence 566665532 2233443 455689999999998755322 2333468899998864311 222 3568999999
Q ss_pred EEeeccCCccee---ecCCCCCCceEEEeecCCCceEee----eccceeeeEeeeeccc------ceeeeccccccCcee
Q 015001 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF------PIEVNVSSCGNLKCL 257 (414)
Q Consensus 191 L~l~~c~~~~~l---~i~~l~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L 257 (414)
+.+..+ +..+ .+.+ .+|+.+.+.. .+..+.. .+++|+++.+.++... --.-.|.+|++|+.+
T Consensus 231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 231 IEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp EECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 999864 3333 2334 6899999854 4555543 6789999999775421 012247789999999
Q ss_pred EeeccCCchHHHHhhhccCCCCcEEeccccccccccc----ccccccceEEeeccC
Q 015001 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCD 309 (414)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~~~~l~----~~~~~L~~L~l~~c~ 309 (414)
.+... +.. .-...+..|.+|+.+.|... +..+. ..+ +|+.+.+.++.
T Consensus 306 ~l~~~-i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 306 EIPES-IRI-LGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CCCTT-CCE-ECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EeCCc-eEE-EhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 99732 221 01123567899999999652 33332 255 89999988764
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.93 E-value=0.0009 Score=55.47 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=31.8
Q ss_pred ccEEEecCcccCCCCccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccC
Q 015001 141 LHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (414)
Q Consensus 141 L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~ 197 (414)
-+.++++++.+...+.. -.++|+.|+|+++.+..-. ...+..+++|++|+|++|.
T Consensus 14 ~~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~ 68 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK 68 (174)
T ss_dssp SSEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CcEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC
Confidence 36777887766433221 1367888888777663211 1224556667777776663
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.81 E-value=0.0016 Score=61.65 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=60.4
Q ss_pred CCCceEEEeecCCCceEee----eccceeeeEeeeecccceeeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEe
Q 015001 208 SNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (414)
Q Consensus 208 ~~L~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (414)
.+|+.+.+... +..+.. .+++|+.+.+......-....+..++.++.+......+.+. .+..+.+|+.+.
T Consensus 230 ~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~ 303 (394)
T 4fs7_A 230 TGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVK 303 (394)
T ss_dssp CCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEE
T ss_pred CCCceEEECCC--ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccc----cccccccccccc
Confidence 45666655432 222221 34556666554432110112244555666555543333221 234566666666
Q ss_pred ccccccccccc----ccccccceEEeeccCCceEe----eccCCCeeeEEEeCcee----EEeccCCccceEEEEe
Q 015001 284 MTKCHKLTSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----SFSSNALSLSETSLCF 347 (414)
Q Consensus 284 l~~c~~~~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~l~~~~~~~----~~~~~~~~L~~L~l~~ 347 (414)
+... +..+. ..|.+|+.+++... ++.+ ...+.+|+++.+...-. ..+.++++|+++.+..
T Consensus 304 l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 304 LLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred cccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence 6441 22222 14556666655321 2222 12334455554432211 5677888888888843
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.64 E-value=0.0011 Score=61.31 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=61.1
Q ss_pred ccccCCccccCCCcccEEEecC-cccCCC--CccccCcccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCCccee-
Q 015001 127 ERRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL- 202 (414)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l- 202 (414)
....+|. +..+++|++|+|++ +.+... ..+..+++|+.|+|++|.++.-. ...+.++++|+.|+|++|....-.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~ 97 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSW 97 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCH
Confidence 3456888 77888999999986 766433 45778899999999988773221 223578899999999888543211
Q ss_pred -ecCCCCCCceEEEeec
Q 015001 203 -DLVNLSNLKEIILVNT 218 (414)
Q Consensus 203 -~i~~l~~L~~L~l~~~ 218 (414)
.+.. .+|+.|++.++
T Consensus 98 ~~~~~-~~L~~l~l~~N 113 (347)
T 2ifg_A 98 KTVQG-LSLQELVLSGN 113 (347)
T ss_dssp TTTCS-CCCCEEECCSS
T ss_pred HHccc-CCceEEEeeCC
Confidence 1222 23888888776
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.10 E-value=0.0089 Score=55.19 Aligned_cols=75 Identities=12% Similarity=-0.049 Sum_probs=43.0
Q ss_pred EEEecCc-ccCCCCccccCcccceeEeeE-EEcChHHHHHHHhCCCcccEEEeeccCCccee--ecCCCCCCceEEEeec
Q 015001 143 VLELSYC-KLQQPSENVKLFSLRKLALRE-VCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (414)
Q Consensus 143 ~L~L~~~-~~~~~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~~p~Le~L~l~~c~~~~~l--~i~~l~~L~~L~l~~~ 218 (414)
.++.++. .+...+....+++|+.|+|++ +.+..-. ...+..+++|+.|+|++|...... .+..+++|+.|+++++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455655 443322266677788888875 6552211 122556777777777777432211 2345677777777766
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.96 E-value=0.0023 Score=56.84 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=16.4
Q ss_pred ccCCCcccEEEecCcccCCCCccccCc--ccceeEeeEEEc
Q 015001 135 IFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCA 173 (414)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~ 173 (414)
+..+++|+.|+|++|.+........+. +|+.|+|.+|.+
T Consensus 192 ~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 192 VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTT
T ss_pred HhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcC
Confidence 334455555555554443322222222 444444444443
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.89 E-value=0.0035 Score=55.61 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=21.5
Q ss_pred cCceeEeeccCCch------HHHHhhhccCCCCcEEec
Q 015001 253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSM 284 (414)
Q Consensus 253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l 284 (414)
+|++|++.+|.+.. .-...++..+|+|+.|+=
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 77888888777653 223345677888887763
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.44 E-value=0.12 Score=48.40 Aligned_cols=139 Identities=13% Similarity=0.153 Sum_probs=67.4
Q ss_pred cCCCcccEEEecCcccCC-CCccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccCCcceeecCCCCCCce
Q 015001 136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE 212 (414)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~~~~~l~i~~l~~L~~ 212 (414)
+.+.+|+.+.+....... ...+..+.+|+.+.+..... ... .+..|+.++.+...... ........+.+|+.
T Consensus 227 ~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~~~-i~~~~F~~~~~L~~ 301 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGSVI-VPEKTFYGCSSLTE 301 (394)
T ss_dssp TTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECSSE-ECTTTTTTCTTCCE
T ss_pred cccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceeccCcee-eccccccccccccc
Confidence 345667777665432111 13445566666666643321 111 13456666655543321 11112233466666
Q ss_pred EEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEecc
Q 015001 213 IILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMT 285 (414)
Q Consensus 213 L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~ 285 (414)
+.+.. .+..+.. .+.+|+++.+.... ..+ ...|.+|.+|+.+.+..+ .+.. ..+..|++|+.+.+.
T Consensus 302 i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v-~~I~~~aF~~c~~L~~i~lp~~l~~I~~----~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 302 VKLLD--SVKFIGEEAFESCTSLVSIDLPYLV-EEIGKRSFRGCTSLSNINFPLSLRKIGA----NAFQGCINLKKVELP 374 (394)
T ss_dssp EEECT--TCCEECTTTTTTCTTCCEECCCTTC-CEECTTTTTTCTTCCEECCCTTCCEECT----TTBTTCTTCCEEEEE
T ss_pred ccccc--ccceechhhhcCCCCCCEEEeCCcc-cEEhHHhccCCCCCCEEEECccccEehH----HHhhCCCCCCEEEEC
Confidence 66543 2333332 35666666664321 001 123566777877777532 1222 235667888888776
Q ss_pred c
Q 015001 286 K 286 (414)
Q Consensus 286 ~ 286 (414)
.
T Consensus 375 ~ 375 (394)
T 4fs7_A 375 K 375 (394)
T ss_dssp G
T ss_pred C
Confidence 5
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.75 E-value=0.21 Score=41.76 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCcccEEEeecc
Q 015001 176 QAIASLISGCPLIEYLEIRSC 196 (414)
Q Consensus 176 ~~l~~ll~~~p~Le~L~l~~c 196 (414)
+.+..++.+.+.|++|+|.++
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~n 51 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNM 51 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTC
T ss_pred HHHHHHHhcCCCccEEECCCC
Confidence 455666666777777777654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.44 E-value=0.092 Score=49.31 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=65.4
Q ss_pred CccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccC-CcceeecCCCCCCceEEEeecCCCceEee----e
Q 015001 155 SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCE-GLESLDLVNLSNLKEIILVNTSDIKRVEI----K 227 (414)
Q Consensus 155 ~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~-~~~~l~i~~l~~L~~L~l~~~~~l~~~~~----~ 227 (414)
..+..+.+|+.+.+..... ... .+.+|+.|+++.+...- .+..-.+.+|.+|+.+.+.. .+..+.- .
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred ceeeecccccEEecccccceecCc----ccccccccccccCCCcccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence 3455667777777643221 222 24567888887775321 11112344567788877764 3555542 4
Q ss_pred ccceeeeEeeeecccce-eeeccccccCceeEeeccCCchHHHHhhhccCCCCcEEeccc
Q 015001 228 TSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (414)
Q Consensus 228 ~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (414)
|.+|+++.+.... ..+ ...|.+|++|+.+.+.++.... ..+..+.+|+.+.+..
T Consensus 333 C~~L~~i~ip~sv-~~I~~~aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPSSV-TKIPESAFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECTTC-CBCCGGGGTTCTTCCEEEESSCHHHH----HTCBCCCCC-------
T ss_pred CCCCCEEEECccc-CEEhHhHhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEeCC
Confidence 6788888875432 111 2347788999999987654221 2355677888877654
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.77 E-value=0.28 Score=45.99 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=34.6
Q ss_pred ccceeeeEeeeecccceeeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEecccc-ccccccc-ccccccceE
Q 015001 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKC-HKLTSVR-ISSPCLKTL 303 (414)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c-~~~~~l~-~~~~~L~~L 303 (414)
+++|+++.+......--...|.+|.+|+++.|... .+.+. .+..|.+|+.+.|... ..++.-. ..|++|+.+
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEE
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHhhCCCCCCEE
Confidence 45555555543210000113555666776666422 12221 2445666777666431 1121111 255666666
Q ss_pred Eeec
Q 015001 304 ILEC 307 (414)
Q Consensus 304 ~l~~ 307 (414)
.+.+
T Consensus 363 ~~~~ 366 (394)
T 4gt6_A 363 EYSG 366 (394)
T ss_dssp EESS
T ss_pred EECC
Confidence 6654
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.26 E-value=0.078 Score=44.44 Aligned_cols=97 Identities=18% Similarity=0.149 Sum_probs=52.7
Q ss_pred ChhhHHHHHHHHHh--CCCeEEEEEec-CCc---cccCCccccCCCcccEEEecCcccCCC------CccccCcccceeE
Q 015001 100 NASLAGRCLGLAIE--SEVKELVLVHW-RSE---RRNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA 167 (414)
Q Consensus 100 ~~~~i~~~l~~~~~--~~l~~L~l~~~-~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 167 (414)
...+++..+..... +.+++|+|... ... ...+-..+..-++|++|+|++|.+... .....-+.|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 34456777766654 36777777532 111 112333444557788888888776532 1112235677777
Q ss_pred eeEEEcChHHHHHH---HhCCCcccEEEeecc
Q 015001 168 LREVCADDQAIASL---ISGCPLIEYLEIRSC 196 (414)
Q Consensus 168 L~~~~~~~~~l~~l---l~~~p~Le~L~l~~c 196 (414)
|++|.+++.....+ +.....|++|.|+++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 77777766554443 333445666666543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.18 E-value=1.1 Score=41.48 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred CCCcccEEEecCccc-CCCCccccCcccceeEeeEEEc--ChHHHHHHHhCCCcccEEEeeccCCccee---ecCCCCCC
Q 015001 137 YVESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNL 210 (414)
Q Consensus 137 ~~~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~--~~~~l~~ll~~~p~Le~L~l~~c~~~~~l---~i~~l~~L 210 (414)
.+.++..+.+..... .....+..+.+|+.+.+..... ... ...+|..|+++.+... +..+ ....+.+|
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~----~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDG----AFYGMKALDEIAIPKN--VTSIGSFLLQNCTAL 265 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTT----TTTTCSSCCEEEECTT--CCEECTTTTTTCTTC
T ss_pred ccccccccccccceeEEeecccccccccceeeeccceeEEccc----cccCCccceEEEcCCC--ccEeCccccceeehh
Confidence 345555555544211 1113445566676666643211 111 2456788888877653 2222 33446777
Q ss_pred ceEEEeecCCCceEee----eccceeeeEeeeecccce-eeeccccccCceeEeecc--CCchHHHHhhhccCCCCcEEe
Q 015001 211 KEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLS 283 (414)
Q Consensus 211 ~~L~l~~~~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~ 283 (414)
+.+.+.. .+..+.. .+++|+++.+.+.....+ .-.|.+|.+|+.+.+... .+... .+.+|.+|+.+.
T Consensus 266 ~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ 339 (379)
T 4h09_A 266 KTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKALSTIS 339 (379)
T ss_dssp CEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCCCC
T ss_pred ccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCCCEEE
Confidence 7777753 3444432 467788887765431111 124677888998888532 12222 245678888777
Q ss_pred ccc
Q 015001 284 MTK 286 (414)
Q Consensus 284 l~~ 286 (414)
+..
T Consensus 340 ip~ 342 (379)
T 4h09_A 340 YPK 342 (379)
T ss_dssp CCT
T ss_pred ECC
Confidence 643
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=79.26 E-value=2.4 Score=39.06 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=17.2
Q ss_pred ccccccCceeEeeccCCchHHHHhhhccCCCCcEEecc
Q 015001 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (414)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (414)
+.+|++|+.+.+.++.+..- -...+..|.+|+.+.|.
T Consensus 282 F~~c~~L~~i~l~~~~i~~I-~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETL-EPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEE-CTTTTTTCTTCCEEECC
T ss_pred ccccccccccccccccccee-hhhhhcCCCCCCEEEcC
Confidence 44556666666654332110 01123445666666554
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=67.16 E-value=2.2 Score=32.74 Aligned_cols=42 Identities=21% Similarity=0.014 Sum_probs=29.0
Q ss_pred cCCccccCCCcccEEEecCcccCCC--CccccCcccceeEeeEEEc
Q 015001 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA 173 (414)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~ 173 (414)
.+|..+. .+|++|+|+++.+... ..+..+++|++|+|.+|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4554332 5688889988877543 4456777888888887766
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=51.12 E-value=5.7 Score=30.39 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=29.9
Q ss_pred EEEecCcccCCCCccccCc-ccceeEeeEEEcChHHHHHHHhCCCcccEEEeeccCC
Q 015001 143 VLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG 198 (414)
Q Consensus 143 ~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~~p~Le~L~l~~c~~ 198 (414)
.++-++..+........+| +|+.|+|++|.++.-. ...+..+++|+.|.|.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCe
Confidence 4555555443111122233 6888888888772111 12245667777777777654
Done!