Query 015002
Match_columns 414
No_of_seqs 142 out of 1134
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:09:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0473 LeuB Isocitrate/isopro 100.0 5E-111 1E-115 827.5 31.8 337 8-408 2-347 (348)
2 PLN03065 isocitrate dehydrogen 100.0 6E-109 1E-113 846.2 40.6 411 2-413 70-480 (483)
3 PRK08299 isocitrate dehydrogen 100.0 4E-108 9E-113 829.6 39.2 402 3-410 1-402 (402)
4 PTZ00435 isocitrate dehydrogen 100.0 3E-105 6E-110 810.4 39.4 409 2-412 2-412 (413)
5 PRK08997 isocitrate dehydrogen 100.0 1E-105 3E-110 798.6 36.0 329 8-406 1-334 (334)
6 PRK08194 tartrate dehydrogenas 100.0 4E-105 8E-110 800.8 36.1 337 10-407 4-350 (352)
7 TIGR00127 nadp_idh_euk isocitr 100.0 1E-104 2E-109 805.4 39.3 404 4-412 1-409 (409)
8 PRK14025 multifunctional 3-iso 100.0 8E-105 2E-109 791.7 35.5 321 10-406 2-330 (330)
9 PLN02329 3-isopropylmalate deh 100.0 7E-105 2E-109 807.4 34.2 349 8-412 45-407 (409)
10 TIGR02089 TTC tartrate dehydro 100.0 2E-104 4E-109 796.9 35.1 337 10-406 4-352 (352)
11 PLN00118 isocitrate dehydrogen 100.0 2E-104 4E-109 797.7 35.3 327 9-406 41-372 (372)
12 PRK06451 isocitrate dehydrogen 100.0 8E-103 2E-107 795.5 36.5 355 12-406 26-408 (412)
13 PLN00103 isocitrate dehydrogen 100.0 2E-102 4E-107 789.9 37.7 382 1-410 1-410 (410)
14 TIGR00169 leuB 3-isopropylmala 100.0 2E-102 4E-107 781.0 35.6 336 11-406 1-349 (349)
15 PRK03437 3-isopropylmalate deh 100.0 2E-102 4E-107 779.3 35.2 331 10-406 5-344 (344)
16 PRK00772 3-isopropylmalate deh 100.0 2E-102 5E-107 782.4 35.6 341 8-408 1-357 (358)
17 PRK09222 isocitrate dehydrogen 100.0 2E-102 4E-107 802.5 35.6 337 8-410 3-345 (482)
18 TIGR02924 ICDH_alpha isocitrat 100.0 3E-102 7E-107 798.2 34.3 332 11-408 2-339 (473)
19 PLN00123 isocitrate dehydrogen 100.0 9E-102 2E-106 774.7 36.0 321 10-407 31-360 (360)
20 TIGR00175 mito_nad_idh isocitr 100.0 2E-101 5E-106 770.0 35.2 324 10-406 4-333 (333)
21 PRK07006 isocitrate dehydrogen 100.0 3E-101 6E-106 785.6 34.9 359 12-406 22-409 (409)
22 TIGR00183 prok_nadp_idh isocit 100.0 1E-100 3E-105 782.9 35.2 360 12-406 29-416 (416)
23 TIGR02088 LEU3_arch isopropylm 100.0 6E-100 1E-104 756.1 35.2 319 12-403 1-322 (322)
24 PRK07362 isocitrate dehydrogen 100.0 5E-100 1E-104 774.0 33.8 360 12-405 31-473 (474)
25 KOG0785 Isocitrate dehydrogena 100.0 5E-100 1E-104 732.7 23.9 325 10-406 36-365 (365)
26 PF00180 Iso_dh: Isocitrate/is 100.0 6.6E-97 1E-101 744.7 25.7 332 11-402 1-348 (348)
27 PLN00096 isocitrate dehydrogen 100.0 2E-93 4.2E-98 715.4 34.1 380 12-406 1-393 (393)
28 COG0538 Icd Isocitrate dehydro 100.0 4.1E-91 9E-96 688.4 31.6 365 11-407 20-407 (407)
29 KOG0784 Isocitrate dehydrogena 100.0 5.5E-84 1.2E-88 628.7 26.5 325 9-407 42-373 (375)
30 KOG0786 3-isopropylmalate dehy 100.0 2.8E-80 6E-85 583.0 21.4 339 9-410 4-362 (363)
31 KOG1526 NADP-dependent isocitr 100.0 8.2E-75 1.8E-79 557.0 29.0 411 1-413 10-420 (422)
32 PF03971 IDH: Monomeric isocit 96.9 0.019 4.2E-07 61.6 14.4 180 179-372 450-640 (735)
33 TIGR00178 monomer_idh isocitra 96.6 0.043 9.3E-07 59.0 14.0 171 188-372 463-644 (741)
34 COG2838 Icd Monomeric isocitra 94.9 0.89 1.9E-05 48.4 15.1 176 184-372 461-646 (744)
35 PF04166 PdxA: Pyridoxal phosp 93.7 0.045 9.7E-07 54.9 2.8 137 184-340 150-296 (298)
36 PRK03371 pdxA 4-hydroxythreoni 93.0 0.073 1.6E-06 54.0 3.0 140 184-343 176-324 (326)
37 PRK00232 pdxA 4-hydroxythreoni 93.0 0.073 1.6E-06 54.2 2.9 141 184-344 177-326 (332)
38 PRK03743 pdxA 4-hydroxythreoni 92.8 0.081 1.8E-06 53.9 2.9 141 184-344 177-326 (332)
39 PRK03946 pdxA 4-hydroxythreoni 92.6 0.088 1.9E-06 53.0 2.9 135 184-344 157-303 (307)
40 PRK01909 pdxA 4-hydroxythreoni 92.6 0.089 1.9E-06 53.5 2.9 141 184-344 172-322 (329)
41 PRK05312 pdxA 4-hydroxythreoni 92.4 0.094 2E-06 53.5 2.9 141 184-344 181-331 (336)
42 PRK02746 pdxA 4-hydroxythreoni 92.4 0.097 2.1E-06 53.5 2.9 140 184-344 179-339 (345)
43 COG1995 PdxA Pyridoxal phospha 92.3 0.096 2.1E-06 52.9 2.7 59 280-344 267-325 (332)
44 TIGR00557 pdxA 4-hydroxythreon 92.2 0.1 2.3E-06 52.8 2.9 140 184-343 169-318 (320)
45 TIGR00127 nadp_idh_euk isocitr 88.4 0.24 5.3E-06 51.7 1.8 21 127-147 140-161 (409)
46 PLN00103 isocitrate dehydrogen 84.6 0.46 1E-05 49.7 1.4 15 224-238 228-242 (410)
47 PTZ00435 isocitrate dehydrogen 51.6 7.9 0.00017 40.7 1.5 18 127-144 143-161 (413)
48 PRK03371 pdxA 4-hydroxythreoni 50.9 12 0.00026 38.2 2.6 22 8-29 1-24 (326)
49 PRK00232 pdxA 4-hydroxythreoni 39.6 24 0.00053 36.1 2.8 22 8-29 3-26 (332)
50 KOG1671 Ubiquinol cytochrome c 39.3 17 0.00036 34.6 1.5 30 290-326 156-185 (210)
51 PRK05312 pdxA 4-hydroxythreoni 38.5 25 0.00054 36.1 2.7 21 9-29 3-25 (336)
52 TIGR00178 monomer_idh isocitra 36.2 90 0.002 34.6 6.5 112 138-252 179-297 (741)
53 PRK01909 pdxA 4-hydroxythreoni 34.8 36 0.00078 34.9 3.2 20 10-29 6-27 (329)
54 PRK02746 pdxA 4-hydroxythreoni 34.4 37 0.0008 35.0 3.2 23 7-29 7-31 (345)
55 PRK03743 pdxA 4-hydroxythreoni 34.3 32 0.00069 35.3 2.7 20 10-29 4-25 (332)
56 PRK07232 bifunctional malic en 33.1 2.3E+02 0.005 32.3 9.4 97 187-290 602-714 (752)
57 COG1618 Predicted nucleotide k 32.8 3.5E+02 0.0076 25.4 8.9 95 186-287 81-176 (179)
58 COG1222 RPT1 ATP-dependent 26S 32.0 28 0.0006 36.3 1.8 67 192-279 230-303 (406)
59 PF14542 Acetyltransf_CG: GCN5 29.4 1.2E+02 0.0026 24.0 4.8 38 190-238 39-76 (78)
60 COG0655 WrbA Multimeric flavod 27.4 2.3E+02 0.0049 26.4 7.1 82 12-107 6-100 (207)
61 PF00582 Usp: Universal stress 27.4 68 0.0015 25.9 3.2 26 188-213 12-37 (140)
62 PF03971 IDH: Monomeric isocit 27.0 65 0.0014 35.6 3.6 112 136-250 173-291 (735)
63 KOG1014 17 beta-hydroxysteroid 26.5 1.1E+02 0.0024 31.1 5.0 45 196-255 64-108 (312)
64 PRK03946 pdxA 4-hydroxythreoni 26.2 47 0.001 33.7 2.3 19 10-28 2-22 (307)
65 PRK12861 malic enzyme; Reviewe 25.9 4E+02 0.0087 30.6 9.7 96 187-289 611-722 (764)
66 COG1995 PdxA Pyridoxal phospha 25.5 51 0.0011 33.8 2.4 16 10-25 4-21 (332)
67 TIGR00651 pta phosphate acetyl 25.1 3.6E+02 0.0077 27.2 8.4 96 187-289 157-269 (303)
68 TIGR00557 pdxA 4-hydroxythreon 22.8 67 0.0015 32.8 2.7 19 11-29 1-21 (320)
69 cd01988 Na_H_Antiporter_C The 21.8 1.1E+02 0.0024 25.1 3.5 27 189-215 10-36 (132)
No 1
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-111 Score=827.54 Aligned_cols=337 Identities=22% Similarity=0.233 Sum_probs=307.9
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCC---CceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015002 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (414)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~~---~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~ 84 (414)
|+++|++|||||||||||+++++||.+.. ++|+|+++++|++++++||.+||++++++++++|++||||+++|.+.+
T Consensus 2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~ 81 (348)
T COG0473 2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP 81 (348)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence 56999999999999999999999986553 899999999999999999999999999999999999999999996542
Q ss_pred HHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCC--CCCEEEEeeccCCccccccccccCCCcceeeeecCC
Q 015002 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (414)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~--~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (414)
. ..+.+|++++|||+||||+|+||++ .+|+++++. ++|||||||||||+|+|.+++..
T Consensus 82 ~-----~~~~~~~ll~lRk~l~lyANlRP~k--~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~------------- 141 (348)
T COG0473 82 L-----PRPERGLLLALRKELDLYANLRPAK--SLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRIL------------- 141 (348)
T ss_pred C-----CCcccchHHHHHHhcCceeeeeecc--cCCCCCCccCCCccEEEEeeCCCccccCCCcccc-------------
Confidence 1 1267889999999999999999986 566776654 69999999999999999876310
Q ss_pred CCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCc
Q 015002 163 KDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (414)
Q Consensus 163 g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~ 240 (414)
.+ .+++++ ++|||+++|||+|+|||+|++| +++||+|||+|||+.+++|||++|+||+ ++||
T Consensus 142 ------------~~-~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP-- 205 (348)
T COG0473 142 ------------GG-GEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP-- 205 (348)
T ss_pred ------------CC-CeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC--
Confidence 01 247888 9999999999999999999999 6899999999999999999999999998 8999
Q ss_pred cccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccc
Q 015002 241 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR 319 (414)
Q Consensus 241 ~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~ 319 (414)
+|+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||+|+|++..++||||+|||||
T Consensus 206 ----dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAP---- 277 (348)
T COG0473 206 ----DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAP---- 277 (348)
T ss_pred ----CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcc----
Confidence 99999999999999999999999 999999999999999999999999999999998422699999999999
Q ss_pred ccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhc-CCCccchhhhccCCcCCcccccCHHHH
Q 015002 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEF 398 (414)
Q Consensus 320 ~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~-G~~T~Dlg~~~~G~~~~~~~~~sT~e~ 398 (414)
||||||| |||+|+|||++|||+|+|. .++|++|++||++++++ |++|+||| | .++|.||
T Consensus 278 -DIAGkgi-ANPiA~IlS~aMML~~~g~-------~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~ 337 (348)
T COG0473 278 -DIAGKGI-ANPIATILSAAMMLRHLGE-------KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEV 337 (348)
T ss_pred -cccCCCc-cChHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHH
Confidence 9999999 9999999999999999986 56999999999999995 69999998 6 6889999
Q ss_pred HHHHHHHHHH
Q 015002 399 IDAVADDLRA 408 (414)
Q Consensus 399 ~daV~~~l~~ 408 (414)
+|+|+++|..
T Consensus 338 ~d~I~~~l~~ 347 (348)
T COG0473 338 GDAIAKALAS 347 (348)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 2
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=5.9e-109 Score=846.20 Aligned_cols=411 Identities=82% Similarity=1.301 Sum_probs=381.0
Q ss_pred CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCC
Q 015002 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (414)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~ 81 (414)
.|+||+|++||++|+|||||+|||+.++++|+.++++++|+++|+|.+++++||+++|+|+++++++++|++|||++||+
T Consensus 70 ~~~ki~~~~piv~~~GDem~r~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~ 149 (483)
T PLN03065 70 AADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPD 149 (483)
T ss_pred hhccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecC
Q 015002 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (414)
Q Consensus 82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (414)
.++++|+++++.|+|||++||+.||||+|+|||.++++|++.|+|..||+|.|||+||.|.++++...++|.+++.|.++
T Consensus 150 ~~rv~e~~lk~~w~SpN~tiR~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rE 229 (483)
T PLN03065 150 EARVKEFGLKSMWRSPNGTIRNILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPE 229 (483)
T ss_pred cccccccccccccCCccHHHHHHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecC
Confidence 77677888988999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcc
Q 015002 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (414)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~ 241 (414)
+|+++.+..+++|.+ ++++.++++|+++++||+|+||+||++|+++||++||+||||.|||+|+++|+||++++|.++|
T Consensus 230 nte~~~e~~v~~f~~-~gva~~~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~y 308 (483)
T PLN03065 230 DGNAPVELDVYDFKG-PGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKF 308 (483)
T ss_pred CCCCcceeEeeccCC-CCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcC
Confidence 998765555666665 6788778999999999999999999999999999999999999999999999999877887778
Q ss_pred ccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccc
Q 015002 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (414)
Q Consensus 242 ~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d 321 (414)
++.+|+++|++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.+++|||+|||||+|++.+
T Consensus 309 p~~~I~~e~~lIDa~~~~lvk~P~~FViv~~NlfGDIlSDl~A~l~GsLGl~pSanig~dg~~~~fEa~HGSapd~~~~~ 388 (483)
T PLN03065 309 EEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQGFGSLGLMTSVLLSSDGKTLEAEAAHGTVTRHFRLH 388 (483)
T ss_pred CCCCceEEeeeHHHHHHHHHhCCCCcEEEeeccchhhhhHHHHHhcCchhhcccceeCCCCceEEEecCcCcCccccchh
Confidence 87789999999999999999999999999999999999999999999999999999999863479999999999998888
Q ss_pred ccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHH
Q 015002 322 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDA 401 (414)
Q Consensus 322 IaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 401 (414)
|+||+++|||+|+|+|++|||+|+|.++.|+.+.++|++|++||.+|+++|++|+|||...+|+..++++.++|+||+|+
T Consensus 389 iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~~~A~~Le~Av~~tie~G~~T~DLg~~~~G~~~~~~~~~~T~ef~da 468 (483)
T PLN03065 389 QKGQETSTNSIASIFAWTRGLEHRAKLDKNEELLDFVHKLESACIETVESGKMTKDLAILIHGPKVSREFYLNTEEFIDA 468 (483)
T ss_pred ccCCCCCcChHHHHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHHHHcCCcccccccccCCCcccCCCCcCHHHHHHH
Confidence 99999669999999999999999999998888999999999999999999999999963222421123346999999999
Q ss_pred HHHHHHHHhhcC
Q 015002 402 VADDLRARLSGK 413 (414)
Q Consensus 402 V~~~l~~~~~~~ 413 (414)
|+++|+..|.+.
T Consensus 469 V~~~L~~~~~~~ 480 (483)
T PLN03065 469 VAQTLATKRGEP 480 (483)
T ss_pred HHHHHHHHhccC
Confidence 999999888764
No 3
>PRK08299 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=4.1e-108 Score=829.60 Aligned_cols=402 Identities=73% Similarity=1.168 Sum_probs=345.2
Q ss_pred ccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCc
Q 015002 3 FQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDE 82 (414)
Q Consensus 3 ~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~ 82 (414)
|+|||++.||++|||||||||||+++++++.+++++|+|+++++|++++++||+++|++++++++++|++||||++||..
T Consensus 1 ~~~~~~~~~~~~~~gd~i~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~~G~~lp~~tl~~ik~~da~LkGav~tp~~ 80 (402)
T PRK08299 1 MAKIKVKNPVVELDGDEMTRIIWKFIKDKLILPYLDIDLEYYDLGIENRDATDDQVTIDAANAIKKYGVGVKCATITPDE 80 (402)
T ss_pred CCccccCCceEEecCCCchHHHHHHHHHHHhccCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred hhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCC
Q 015002 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (414)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (414)
+++.+.++.++++|+|++|||.||||+|+||+++++++++.|++..|++||||||||+|+|++++..+.+...+.|....
T Consensus 81 ~~~~~~~~~~~~~s~n~~LRk~ldLyaNiRPv~~k~i~~~~pg~~~~ivivREnTEg~Y~gi~~~~~r~~~~~~~~~~~~ 160 (402)
T PRK08299 81 ARVKEFNLKKMWKSPNGTIRNILGGTVFREPIICKNVPRLVPGWTKPIVIGRHAYGDQYRATDFKVPGKGKLTLVFTGED 160 (402)
T ss_pred ccccccCccccccCchHHHHHHcCCeEEEEeeecccccccCCCCCCCEEEEecccCCcccceeEEeccCccceeeeecCC
Confidence 21111122235889999999999999999999888877777777678999999999999999987655555555554322
Q ss_pred CCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccc
Q 015002 163 KDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (414)
Q Consensus 163 g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~ 242 (414)
|. +.+..+.++.+ .++++..++||+++|||+|+||+||++|+++||+|||+|||+.|||+|+++|+|||+++||++|.
T Consensus 161 g~-~~e~~~~~~~~-~~~~~~~~~Tr~~~eRIa~~AF~~A~~r~~kVt~v~KaNVlk~t~glf~~~~~evA~~~yp~~~~ 238 (402)
T PRK08299 161 GE-PIEHEVHDFPG-AGVAMGMYNLDESIRDFARASFNYGLDRKYPVYLSTKNTILKAYDGRFKDIFQEVYEAEFKEKFE 238 (402)
T ss_pred Cc-cccceeccccc-CceeEEEeecHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhhHHHHHHHHHHHHHhCccccc
Confidence 21 10111111111 23443345999999999999999999998899999999999999999999999997558999999
Q ss_pred cCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccc
Q 015002 243 AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (414)
Q Consensus 243 ~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dI 322 (414)
+++|++++++||++|||||++|++|||||+|||||||||++|+++||||++||+|+|+++.++||||+|||||+|+++||
T Consensus 239 ~~~i~~~~~~vDa~~~~lv~~P~~fVivt~NlfGDIlSDlaa~l~GglG~apSanig~~~~~a~FEp~HGSAPD~~~~~I 318 (402)
T PRK08299 239 AAGITYEHRLIDDMVASALKWEGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQHQ 318 (402)
T ss_pred cCcEEEEEeeHHHHHHHHHhCcCCcEEEEeccccchhhhHHHhhcCCcccccceeeCCCCCcEEEecCCCCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999987512899999999998888889
Q ss_pred cCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHHH
Q 015002 323 KGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAV 402 (414)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 402 (414)
||||++|||+|||||++|||+|||+++.++.+.++|++|++||.+++++|++|+|||....|. .+.+||+||+|+|
T Consensus 319 aGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~~~a~~I~~Av~~~l~~g~~T~Dlg~~~g~~----~g~~tT~e~~daI 394 (402)
T PRK08299 319 KGEETSTNPIASIFAWTRGLAHRGKLDGNPELVKFADTLEKVCIETVESGFMTKDLALLVGPD----QKWLTTEEFLDAI 394 (402)
T ss_pred cCCCCccCHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHHcCCcCccchhccCCC----CCCcCHHHHHHHH
Confidence 999944999999999999999999988777889999999999999999999999995110020 1259999999999
Q ss_pred HHHHHHHh
Q 015002 403 ADDLRARL 410 (414)
Q Consensus 403 ~~~l~~~~ 410 (414)
+++|.+.|
T Consensus 395 i~~l~~~~ 402 (402)
T PRK08299 395 DENLEKAL 402 (402)
T ss_pred HHHHHhhC
Confidence 99997654
No 4
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=2.7e-105 Score=810.43 Aligned_cols=409 Identities=72% Similarity=1.194 Sum_probs=370.3
Q ss_pred CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCC
Q 015002 2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD 81 (414)
Q Consensus 2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~ 81 (414)
.|+||||+.|+|++.||.|.+.+|+-+++.|+.++++|+|+++++|.+++++||+++|+++++++++++++||||++||.
T Consensus 2 ~~~~~~~~~~~v~~~~~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~~v~LkGa~~TP~ 81 (413)
T PTZ00435 2 TGGKIKVKNPVVELDGDEMTRIIWKMIKEKLILPYLDVPIKYYDLSIENRDKTDDKVTVDAAEAIKKHKVGIKCATITPD 81 (413)
T ss_pred CcccccccCCeEEecccHHHHHHHHHHHHhhccCCCCceEEEEeCcHHHHHhcCCcCCHHHHHHHHHcCEEEECcccCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecC
Q 015002 82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (414)
Q Consensus 82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (414)
.+++.+++|+++|+|||++||+.||||+|+|||.++++|++.|+++.|++++||||||.|.++++...++++.+..|.+.
T Consensus 82 ~~~~~~~~l~~~~~S~n~~LR~~ldlyanvRPi~~k~i~~~~pg~~~~i~i~Ren~e~~y~~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 82 EARVKEFNLKKMWKSPNGTIRNILDGTVFREPIIIKNIPRLVPGWKKPIVIGRHAFGDQYKATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred cccccccccccccCCchHHHHHHcCCeEEEeeeeccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCEEEEEEecC
Confidence 64333566777899999999999999999999877889999999999999999999999999999988888888889887
Q ss_pred CCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcc
Q 015002 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (414)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~ 241 (414)
+|.++.+..+++|.. ++++...+|||+++|||+|+||+||++|+++||+|||+||||.|||+|+++|+||++++||++|
T Consensus 162 ~g~~~~~~~~~~~~~-~~v~~~~~~Tr~~~eRIar~AF~~A~~r~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYpe~~ 240 (413)
T PTZ00435 162 DGSEPQRVDVFDFKG-GGVAMGMYNTDESIEGFARSCFQYALDRKMPLYLSTKNTILKKYDGRFKDIFQEIYDEEYKAKF 240 (413)
T ss_pred CCCcceeeeeeccCC-CCeeEEEEeCHHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhHHHHHHHHHHHHHHhCcccc
Confidence 665555556666665 5676668999999999999999999999889999999999999999999999999756799999
Q ss_pred ccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccc
Q 015002 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (414)
Q Consensus 242 ~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d 321 (414)
.+++|++++++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+|||||+++++|
T Consensus 241 ~~~~I~~~~~lVDa~~m~lv~~P~~fViV~~NlfGDIlSDlaA~l~GglGlapSanig~d~~~a~FEp~HGSApdi~~~~ 320 (413)
T PTZ00435 241 EKAGLWYEHRLIDDMVAQAIKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRQH 320 (413)
T ss_pred ccCCEEEEEeeHHHHHHHHhhCCCCeEEEeecccchhhhHHHHHhcCcccccccceeCCCCCeEEEEcCcCCccccchhh
Confidence 99999999999999999999999999999999999999999999999999999999998851299999999999888888
Q ss_pred ccCC-CCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCC-cCCcccccCHHHHH
Q 015002 322 QKGG-ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS-KMTREHYLNTEEFI 399 (414)
Q Consensus 322 IaGk-~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~-~~~~~~~~sT~e~~ 399 (414)
|+|| ++ |||+|||||++|||+|||+++.++.+.++|++|++||.+|+++|++|+|||..-.|+ ++.+++.++|+||+
T Consensus 321 iaGk~~~-ANP~A~Ils~ammL~~lg~~~~~~~~~~~A~~ie~Av~~~i~~g~~T~Dlg~~~~G~~~~~~~~~~~T~e~~ 399 (413)
T PTZ00435 321 QKGKETS-TNSIASIFAWTRGLAHRAKLDNNQELVKFCQALERSCIETIEAGFMTKDLAICVHGSSKVTRSDYLNTEEFI 399 (413)
T ss_pred hcCCCCc-cChHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHHcCCCccccccccCCCccccCCCCcCHHHHH
Confidence 9996 67 999999999999999999888777789999999999999999999999996100031 22344569999999
Q ss_pred HHHHHHHHHHhhc
Q 015002 400 DAVADDLRARLSG 412 (414)
Q Consensus 400 daV~~~l~~~~~~ 412 (414)
|+|+++|.++|.+
T Consensus 400 daV~~~L~~~~~~ 412 (413)
T PTZ00435 400 DKVAEKLKKKLGA 412 (413)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999888754
No 5
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-105 Score=798.60 Aligned_cols=329 Identities=21% Similarity=0.265 Sum_probs=301.7
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHH
Q 015002 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKE 87 (414)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e 87 (414)
|+++|++|||||||||||+++++||.+.+++|+|+++++|.+++++||+++|++++++++++|++||||+++|.+.
T Consensus 1 ~~~~I~vipGDGIGpEV~~~a~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~Gavg~p~~~---- 76 (334)
T PRK08997 1 MKQTITVIPGDGIGPSIIDATLKILDKLGCDFEYEFADAGLTALEKHGELLPQRTLDLIEKNKIALKGPLTTPVGE---- 76 (334)
T ss_pred CCcEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCHHHHHHHHHCCEEEECcccCCCCc----
Confidence 6689999999999999999999999877889999999999999999999999999999999999999999999542
Q ss_pred HHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCC-CCCEEEEeeccCCccccccccccCCCcceeeeecCCCCcc
Q 015002 88 FVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEK 166 (414)
Q Consensus 88 ~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~-~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~ 166 (414)
+++|+++.|||+||||+|+||+++ +|++.++. ++|+|||||||||+|+|.++...
T Consensus 77 -----~~~~~~~~LR~~ldlyanvRP~k~--~~g~~~~~~~iD~vivREnteG~Y~g~~~~~~----------------- 132 (334)
T PRK08997 77 -----GFTSINVTLRKKFDLYANVRPVLS--FPGTKARYDNIDIITVRENTEGMYSGEGQTVS----------------- 132 (334)
T ss_pred -----CccchHHHHHHHcCCeEEEeeccc--CCCCCCccCCcCEEEEEeccCceecCccceec-----------------
Confidence 457889999999999999999876 34433333 89999999999999999764210
Q ss_pred chhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccC
Q 015002 167 TELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAA 244 (414)
Q Consensus 167 ~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~ 244 (414)
.+ ..++++ ++|||+++|||+|+||+||++|++ +||+|||+|||+.|||+|+++|+||+ ++||
T Consensus 133 --------~~-~~~a~~~~~~Tr~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yP------ 196 (334)
T PRK08997 133 --------ED-GETAEATSIITRKGAERIVRFAYELARKEGRKKVTAVHKANIMKSTSGLFLKVAREVA-LRYP------ 196 (334)
T ss_pred --------CC-CceEEEEEEeeHHHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchhhhHHHHHHHHHHH-hhCC------
Confidence 00 126777 999999999999999999999964 69999999999999999999999997 6899
Q ss_pred CeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccccc
Q 015002 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (414)
Q Consensus 245 ~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIa 323 (414)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| |||
T Consensus 197 ~V~~~~~~vDa~~~~lv~~P~~fdVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----dIA 269 (334)
T PRK08997 197 DIEFEEMIVDATCMQLVMNPEQFDVIVTTNLFGDILSDLCAGLVGGLGMAPGANIGRD--AAIFEAVHGSAP-----DIA 269 (334)
T ss_pred CeEEEeeeHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCCCCcCcceeECCC--ceEEECCCCchh-----hhC
Confidence 99999999999999999999999 9999999999999999999999999999999987 599999999999 999
Q ss_pred CCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHHHH
Q 015002 324 GGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAV 402 (414)
Q Consensus 324 Gk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV 402 (414)
|||+ |||+|+|||++|||+|||+ .++|++|++||.+++++| .+|+||| | .+||+||+|+|
T Consensus 270 Gk~i-ANP~a~IlS~amML~~lG~-------~~~A~~i~~AV~~vl~~G~~~T~DlG----G-------~a~T~e~~~av 330 (334)
T PRK08997 270 GKNL-ANPTSVILAAIQMLEYLGM-------PDKAERIRKAIVAVIEAGDRTTRDLG----G-------THGTTDFTQAV 330 (334)
T ss_pred CCCc-cCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHH
Confidence 9999 9999999999999999986 789999999999999999 5799998 7 79999999999
Q ss_pred HHHH
Q 015002 403 ADDL 406 (414)
Q Consensus 403 ~~~l 406 (414)
+++|
T Consensus 331 ~~~l 334 (334)
T PRK08997 331 IDRL 334 (334)
T ss_pred HhhC
Confidence 9875
No 6
>PRK08194 tartrate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-105 Score=800.79 Aligned_cols=337 Identities=18% Similarity=0.197 Sum_probs=302.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~ 84 (414)
++|++|||||||||||++++++|.+. +++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.+.+
T Consensus 4 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~~~~~~~e~~~~~~G~~~~~~~G~~lp~~tl~~~k~~dail~G~vg~p~~~~ 83 (352)
T PRK08194 4 FKIAVIPGDGVGKEVVPAAVRVLKAVAEVHGGLKFEFTEFPWSCEYYLEHGEMMPEDGLEQLKQFDAIFLGAVGNPKLVP 83 (352)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHHHhhccCCceEEEEEcCcHHHHHHhCCCCCHHHHHHHHhCCEEEEcccCCCCcCC
Confidence 78999999999999999999988532 5899999999999999999999999999999999999999999996321
Q ss_pred HHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCC
Q 015002 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG 162 (414)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~ 162 (414)
. ..+.+++++.|||+||||+|+||+++ ++++ |++...++|+|||||||||+|+|.++....
T Consensus 84 --~---~~~~~~~~l~LR~~ldLyaNvRP~k~~pg~~splk~~~~iD~vivREnteG~Y~g~~~~~~~------------ 146 (352)
T PRK08194 84 --D---HISLWGLLIKIRREFEQVINIRPAKQLRGIKSPLANPKDFDLLVVRENSEGEYSEVGGRIHR------------ 146 (352)
T ss_pred --C---CCCchhhHHHHHHHcCCEEEEEeeecCCCCCCCCCCCCCCCEEEEEeCCCccccCCCccccC------------
Confidence 0 01234458999999999999999986 4555 343224899999999999999997643110
Q ss_pred CCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcc
Q 015002 163 KDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241 (414)
Q Consensus 163 g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~ 241 (414)
+..+++++ ++|||+++|||+|+||++|++|+++||+|||+|||+.|||||+++|+||+ ++||
T Consensus 147 -------------g~~~~a~~~~~~Tr~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~~t~~lf~~~~~eva-~~yp--- 209 (352)
T PRK08194 147 -------------GEDEIAIQNAVFTRKGTERAMRYAFELAAKRRKHVTSATKSNGIVHSMPFWDEVFQEVG-KDYP--- 209 (352)
T ss_pred -------------CccceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEeCcchhhhhHHHHHHHHHHHH-hhCC---
Confidence 01356778 99999999999999999999997789999999999999999999999996 7999
Q ss_pred ccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc-eEEEccccCccccccc
Q 015002 242 EAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYR 319 (414)
Q Consensus 242 ~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~ 319 (414)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. ++||||+|||||
T Consensus 210 ---~V~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GslGl~pSanig~~~~~~alFEp~HGSAP---- 282 (352)
T PRK08194 210 ---EIETDSQHIDALAAFFVTRPEEFDVIVASNLFGDILTDIGAAIMGSIGIAPAANINVNGKYPSMFEPVHGSAP---- 282 (352)
T ss_pred ---CceeeehhHHHHHHHHhhChhhCcEEEEccchHHHHhHHHHHhcCCccccceeeecCCCCcceEEECCCCCch----
Confidence 99999999999999999999999 999999999999999999999999999999996542 489999999999
Q ss_pred ccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHH
Q 015002 320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFI 399 (414)
Q Consensus 320 ~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~ 399 (414)
||||||+ |||+|+|||++|||+|||+ .++|++|++||++++++|++|+||| | ++||+||+
T Consensus 283 -diAGk~i-ANP~a~IlS~amML~~lg~-------~~~A~~i~~Av~~~l~~g~~T~DlG----G-------~~~T~e~~ 342 (352)
T PRK08194 283 -DIAGKGI-ANPIGQIWTAKLMLDHFGE-------EELGSHLLDVIEDVTEDGIKTPDIG----G-------RATTDEVT 342 (352)
T ss_pred -hhCCCCc-CCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCCcCcCC----C-------CcCHHHHH
Confidence 9999999 9999999999999999985 7899999999999999999999998 7 79999999
Q ss_pred HHHHHHHH
Q 015002 400 DAVADDLR 407 (414)
Q Consensus 400 daV~~~l~ 407 (414)
++|+++|+
T Consensus 343 ~ai~~~l~ 350 (352)
T PRK08194 343 DEIISRLK 350 (352)
T ss_pred HHHHHHHh
Confidence 99999994
No 7
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=100.00 E-value=1e-104 Score=805.41 Aligned_cols=404 Identities=75% Similarity=1.231 Sum_probs=362.4
Q ss_pred cceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCch
Q 015002 4 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (414)
Q Consensus 4 ~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~ 83 (414)
+||||.+|++++.||+|.+.+|+-+++.|+.++++|+|+++++|.+++++||+++|++++++++++|++||||++||...
T Consensus 1 ~~~~~~~p~v~~~g~em~~~~~~~~~~~~~~~~~~i~~~~~d~g~~~~~~tg~~lp~ea~eaik~~dv~LkGa~~TP~~~ 80 (409)
T TIGR00127 1 SKIKVANPVVEMDGDEMTRIIWELIKDKLILPYVELDLKYYDLGVEYRDATNDQVTVDAAEAIKKYNVGVKCATITPDEA 80 (409)
T ss_pred CCccccCCeEEecCcHHHHHHHHHHHHhhccCCcCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCCC
Q 015002 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGK 163 (414)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g 163 (414)
++.++.|++.|+|||++||+.||||+|+|||.+++++++.|++..|++|+||||||.|.++++...++++.+..|.+..+
T Consensus 81 ~~~~~~l~k~~~S~n~~lR~~ldlyanvRPi~~~~~~~~~pg~~~~i~i~R~~~~~~y~~iD~vivREnt~Eg~Y~g~e~ 160 (409)
T TIGR00127 81 RVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWEKPIIIGRHAFGDQYRATDFVVPGPGKLELVYKPKDG 160 (409)
T ss_pred cccccccccccCCccHHHHHHcCCeEEeeeccccccCccCCCCCCCeeeeccccCCCcCceEEEEecCCeeeEEEECCCC
Confidence 44455566789999999999999999999988888888888888999999999999999999999999988999987655
Q ss_pred CccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcccc
Q 015002 164 DEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA 243 (414)
Q Consensus 164 ~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~ 243 (414)
..++...+..+...++++.+.+|||+++|||+|+||+||++|+++||+|||+|||+.|||+|+++|+||++++||++|++
T Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~T~~~~eRIar~AF~~A~~~~~~Vt~v~KaNVlk~~dglf~~~~~eva~~eYp~~~~~ 240 (409)
T TIGR00127 161 TQKVTLKVYDFEEGGGVAMAMYNTDESIEGFAHSSFQLALEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQYKSKFEA 240 (409)
T ss_pred CcccceeeeeccCCCCeEEEEEECHHHHHHHHHHHHHHHHHcCCCEEEEcCcchhhhhhHHHHHHHHHHHHHhCcccccC
Confidence 33222222222211466667789999999999999999999998999999999999999999999999975799999999
Q ss_pred CCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccccc
Q 015002 244 AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQK 323 (414)
Q Consensus 244 ~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIa 323 (414)
.+|++++++||++|||||++|++|||||+|||||||||++|+++|||||+||+|+|+++...||||+|||||++++++||
T Consensus 241 ~~I~~~~~lVDa~~m~lv~~P~~fViv~~NlfGDIlSDlaA~l~GslGl~pSanig~~~~~~~fEp~HGSApdi~~~~ia 320 (409)
T TIGR00127 241 LGIWYEHRLIDDMVAQALKSEGGFIWACKNYDGDVQSDIVAQGFGSLGLMTSVLICPDGKTFEAEAAHGTVTRHYRMYQK 320 (409)
T ss_pred CCEEEEEeeHHHHHHHHhhCCCCcEEEecccchHHHHHHHHHhcCchhhhheeeeCCCCceEEeccccCCCcccchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999885235789999999988888889
Q ss_pred CC-CCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccch----hhhccCCcCCcccccCHHHH
Q 015002 324 GG-ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDL----ALIIHGSKMTREHYLNTEEF 398 (414)
Q Consensus 324 Gk-~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dl----g~~~~G~~~~~~~~~sT~e~ 398 (414)
|| ++ |||+|+|||++|||+|+|+++.+..+.++|++|++||.+|+++|++|+|| | |....+++.++|+||
T Consensus 321 Gk~~~-ANP~A~IlS~ammL~~lg~~~~~~g~~~~A~~Ie~Av~~~i~~g~~T~Dl~~~~G----G~~~~~~~~~~T~e~ 395 (409)
T TIGR00127 321 GQETS-TNSIASIFAWSRGLAHRAKLDNNPELSKFANILESACINTVEAGIMTKDLALILG----GSPVERSAYLNTEEF 395 (409)
T ss_pred CCCCc-cChHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHhcCCcccccccccC----CCcccCCCCcCHHHH
Confidence 97 67 99999999999999999988877778999999999999999999999999 5 522223445999999
Q ss_pred HHHHHHHHHHHhhc
Q 015002 399 IDAVADDLRARLSG 412 (414)
Q Consensus 399 ~daV~~~l~~~~~~ 412 (414)
+|+|+++|+++|++
T Consensus 396 ~daV~~~L~~~~~~ 409 (409)
T TIGR00127 396 IDAVEERLKKKIAA 409 (409)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999888763
No 8
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=100.00 E-value=8.2e-105 Score=791.75 Aligned_cols=321 Identities=23% Similarity=0.231 Sum_probs=297.4
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHH
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~ 89 (414)
++|++|||||||||||++++++|.+.+++|+|+++++|.++++++|+++|++++++|+++|++||||+++|.
T Consensus 2 ~~I~vipGDGIGpEv~~~~~~vl~~~~~~~~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~G~vg~p~-------- 73 (330)
T PRK14025 2 HKICVIEGDGIGKEVVPAALHVLEATGLPFEFVYAEAGDEVFEKTGKALPEETIEAAKEADAVLFGAAGETA-------- 73 (330)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHhcCCcEEEEEEcCCHHHHHHhCCCCCHHHHHHHHHCCEEEEccCCCCc--------
Confidence 689999999999999999999998778999999999999999999999999999999999999999999873
Q ss_pred hhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccch
Q 015002 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (414)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (414)
+|+++.|||+||||+|+||+++ +|++..+ .++|+|||||||||+|+|+++..
T Consensus 74 -----~~~~~~LR~~ldlyanvRP~r~--~pg~~~~~~~iD~vivREnteG~Y~g~~~~~-------------------- 126 (330)
T PRK14025 74 -----ADVIVKLRRILDTYANVRPVKS--YKGVKCLYPDIDYVIVRENTEGLYKGIEAEI-------------------- 126 (330)
T ss_pred -----cchHHHHHHHcCCeEEEEEeec--CCCCCCccCCcCEEEEEECCCceecCccccc--------------------
Confidence 2458999999999999999876 3433333 37999999999999999987531
Q ss_pred hhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhC----CC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccc
Q 015002 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK----KW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (414)
Q Consensus 169 ~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r----~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~ 242 (414)
.++++.+ ++|||+++|||+|+||+||++| ++ +||+|||+|||+.|||+|+++|+||+ ++||
T Consensus 127 --------~~~~~~~~~~~Tr~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~~t~glf~e~~~eva-~~yp---- 193 (330)
T PRK14025 127 --------ADGVTVATRVITRKASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLKKTDGLFKKTFYEVA-KEYP---- 193 (330)
T ss_pred --------CCCceEEeEeccHHHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchhhhhHHHHHHHHHHH-hhCC----
Confidence 0356667 9999999999999999999999 44 69999999999999999999999996 6899
Q ss_pred cCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccc
Q 015002 243 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (414)
Q Consensus 243 ~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d 321 (414)
+|++++++||+||||||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| |
T Consensus 194 --~i~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GglGl~psanig~~--~a~FEp~HGSAP-----d 264 (330)
T PRK14025 194 --DIKAEDYYVDAMNMYIITRPQTFDVVVTSNLFGDILSDGAAGLVGGLGLAPSANIGDK--YGLFEPVHGSAP-----D 264 (330)
T ss_pred --CeEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCCCCcccceeeCCC--cceeEcCCCCch-----h
Confidence 99999999999999999999999 9999999999999999999999999999999987 599999999999 9
Q ss_pred ccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHH
Q 015002 322 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDA 401 (414)
Q Consensus 322 IaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 401 (414)
|||||+ |||+|||||++|||+|||+ .++|++|++||++++++|++|+||| | .+||+||+|+
T Consensus 265 iAGk~i-ANP~a~IlS~ammL~~lG~-------~~~A~~I~~Av~~vl~~g~~T~DlG----G-------~~~T~e~~~a 325 (330)
T PRK14025 265 IAGKGI-ANPTATILTAVLMLRHLGE-------NEEADKVEKALEEVLALGLTTPDLG----G-------NLSTMEMAEE 325 (330)
T ss_pred hCCCCC-cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHH
Confidence 999999 9999999999999999986 7899999999999999999999998 7 7999999999
Q ss_pred HHHHH
Q 015002 402 VADDL 406 (414)
Q Consensus 402 V~~~l 406 (414)
|+++|
T Consensus 326 v~~~~ 330 (330)
T PRK14025 326 VAKRV 330 (330)
T ss_pred HHHhC
Confidence 99874
No 9
>PLN02329 3-isopropylmalate dehydrogenase
Probab=100.00 E-value=7.3e-105 Score=807.39 Aligned_cols=349 Identities=17% Similarity=0.152 Sum_probs=307.2
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCch
Q 015002 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (414)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~ 83 (414)
|.++|++|||||||||||+++++||.+. +++|+|+++++|+++++++|++||++++++|+++|++||||+++|.+.
T Consensus 45 ~~~~IavipGDGIGPEV~~aa~~Vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lP~~tl~~~~~~DaiL~Gavg~p~~~ 124 (409)
T PLN02329 45 KRYNIALLPGDGIGPEVISVAKNVLQKAGSLEGLEFDFQEMPVGGAALDLVGVPLPEETFTAAKQSDAILLGAIGGYKWD 124 (409)
T ss_pred ceEEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCC
Confidence 4589999999999999999999988643 689999999999999999999999999999999999999999999542
Q ss_pred hHHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC---CCCCC--CCCCEEEEeeccCCccccccccccCCCcceee
Q 015002 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (414)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~---~l~~~--~~iDivivREnteg~Y~g~e~~~~~~g~~~~~ 157 (414)
.... . . ..+++++.|||+||||+|+||+++ ++++ |+++. .++|+|||||||||+|+|.++....
T Consensus 125 ~~~~-~-~-~~e~~ll~LRk~ldLyaNvRPvr~~pg~~~~splk~~~~~~iD~vIVREnTEG~Y~G~~~~~~~------- 194 (409)
T PLN02329 125 KNEK-H-L-RPEMALFYLRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMIVRELTGGIYFGEPRGITI------- 194 (409)
T ss_pred CCcc-c-c-cccccHHHHHHHcCCeEeeeeeeccCCCCCcCcccccccCCceEEEEEECCCCeecCCCcceec-------
Confidence 1000 0 0 113569999999999999999987 4655 34321 3799999999999999997642100
Q ss_pred eecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhh
Q 015002 158 FVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (414)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~ 236 (414)
. . .+ .+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+ +++||+++|+||+ ++
T Consensus 195 -~-~-------------~~-~~~a~~~~~iTr~~~eRI~r~AFe~A~~r~~kVT~v~KaNVl~-t~~lf~~~~~evA-~e 256 (409)
T PLN02329 195 -N-E-------------NG-EEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLD-ASILWRKRVTALA-SE 256 (409)
T ss_pred -c-c-------------CC-ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCeEEEEECCCCcc-chHHHHHHHHHHH-hh
Confidence 0 0 01 457888 999999999999999999999988999999999999 9999999999996 79
Q ss_pred cCCccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccc
Q 015002 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (414)
Q Consensus 237 yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP 315 (414)
|| +|++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|+++ ++||||+|||||
T Consensus 257 yP------dV~~~~~~VDa~a~~LV~~P~~FDVIVt~NLfGDILSDlaa~l~GglGlaPSanig~~~-~a~FEpvHGSAP 329 (409)
T PLN02329 257 YP------DVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESG-PGLFEPIHGSAP 329 (409)
T ss_pred CC------CcccchhHHHHHHHHHhcCchhCCEEEEcCcccccccHHHHHhcCCcccCceeecCCCC-ceeeeccCCCch
Confidence 99 99999999999999999999999 99999999999999999999999999999999876 699999999999
Q ss_pred ccccccccCCCCccChhHHHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhcc-CCcCCccccc
Q 015002 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH-GSKMTREHYL 393 (414)
Q Consensus 316 ~~~~~dIaGk~i~ANP~a~IlS~ammL~~-lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~-G~~~~~~~~~ 393 (414)
||||||+ |||+|+|||++|||+| ||+ .++|++|++||.+++++|++|+||+. . | +.+
T Consensus 330 -----dIAGk~i-ANP~A~ILS~amML~~~Lg~-------~~~A~~I~~AV~~vl~~g~~T~Dl~~--~Gg------~~~ 388 (409)
T PLN02329 330 -----DIAGQDK-ANPLATILSAAMLLKYGLGE-------EKAAKRIEDAVVDALNKGFRTGDIYS--PGN------KLV 388 (409)
T ss_pred -----hhcCCcc-cChHHHHHHHHHHHhhhCCC-------HHHHHHHHHHHHHHHHcCCcCccccc--CCC------Ccc
Confidence 9999999 9999999999999999 986 78999999999999999999999930 0 4 138
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 015002 394 NTEEFIDAVADDLRARLSG 412 (414)
Q Consensus 394 sT~e~~daV~~~l~~~~~~ 412 (414)
||+||+|+|+++|+..+++
T Consensus 389 ~T~e~~daIi~~l~~~~~~ 407 (409)
T PLN02329 389 GCKEMGEEVLKSVDSKVPA 407 (409)
T ss_pred CHHHHHHHHHHHHHhhCCC
Confidence 9999999999999888775
No 10
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=100.00 E-value=1.6e-104 Score=796.89 Aligned_cols=337 Identities=20% Similarity=0.205 Sum_probs=301.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC-----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFP-----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~-----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~ 84 (414)
++|++|||||||||||++++++|.+. +++|+|+++++|+++++++|+++|++++++|+++|++||||+++|...+
T Consensus 4 ~~I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~k~~da~L~G~vg~p~~~~ 83 (352)
T TIGR02089 4 YRIAAIPGDGIGKEVVAAALQVLEAAAKRHGGFSLHFTEFPWSCDYYKEHGKMMPEDGLEKLKKFDAIFLGAVGWPALVP 83 (352)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHhhcCCcceEEEEECCcHHHHHHhCCCCCHHHHHHHHhCCEEEEecccCCCCCC
Confidence 78999999999999999999988633 4899999999999999999999999999999999999999999995321
Q ss_pred HHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCC--CCCCEEEEeeccCCccccccccccCCCcceeeeec
Q 015002 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (414)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~--~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~ 160 (414)
. ....+++|++|||+||||+|+||+++ ++++ |+++. .++|+|||||||||+|+|.++... ++
T Consensus 84 ~-----~~~~~~~~l~LRk~ldLyaNvRP~~~~~g~~sp~k~~~~~~iD~vivREnteG~Y~G~~~~~~-~~-------- 149 (352)
T TIGR02089 84 D-----HISLWGLLLKIRREFDQYANVRPAKLLPGVTSPLRNCGPGDFDFVVVRENSEGEYSGVGGRIH-RG-------- 149 (352)
T ss_pred C-----ccCchhhHHHHHHHcCCeEEEEEeecCCCCCCccccccCCCCCEEEEEecCCccccccccccc-CC--------
Confidence 0 01234569999999999999999986 5665 44321 379999999999999999754211 00
Q ss_pred CCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCC
Q 015002 161 EGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (414)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~ 239 (414)
.+ ++++++ ++|||+++|||+|+||+||++|+++||+|||+|||+.|||||+++|++|+ ++||
T Consensus 150 --------------~~-~~~a~~~~~~tr~~~eRi~r~Af~~A~~rr~kVt~v~KaNvl~~t~~lf~~~~~eva-~~yp- 212 (352)
T TIGR02089 150 --------------TD-EEVATQNAIFTRKGVERIMRFAFELAQKRRKHLTSATKSNGIRHSMPFWDEVFAEVA-AEYP- 212 (352)
T ss_pred --------------cc-ceeEEEeEEecHHHHHHHHHHHHHHHHHcCCCEEEEeCCcchhhhhHHHHHHHHHHH-hhCC-
Confidence 01 357888 99999999999999999999997789999999999999999999999996 7999
Q ss_pred ccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc-eEEEccccCccccc
Q 015002 240 KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRH 317 (414)
Q Consensus 240 ~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~ 317 (414)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. ++||||+|||||
T Consensus 213 -----~v~~~~~~vD~~~~~lv~~P~~fDVivt~NlfGDILSD~aa~l~GglGl~psanig~~~~~~a~fEp~HGSAP-- 285 (352)
T TIGR02089 213 -----DVEWDSYHIDALAARFVLKPETFDVIVASNLFGDILSDLGAALMGSLGVAPSANINPEGKFPSMFEPVHGSAP-- 285 (352)
T ss_pred -----CceEeeehHHHHHHHHhcChhhCcEEEecccchhhhhHHHHHhcCCccccceEEecCCCCcceeeecCCCCch--
Confidence 99999999999999999999999 999999999999999999999999999999997642 489999999999
Q ss_pred ccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHH
Q 015002 318 YRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEE 397 (414)
Q Consensus 318 ~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e 397 (414)
||||||+ |||+|||||++|||+|||+ .++|++|++||.+++++|++|+||| | .+||+|
T Consensus 286 ---diAGk~i-ANP~a~Ils~amML~~lg~-------~~~A~~I~~Av~~~l~~g~~T~DlG----G-------~~sT~e 343 (352)
T TIGR02089 286 ---DIAGKGI-ANPIGAIWTAAMMLEHLGE-------KEAGAKIMDAIERVTAAGILTPDVG----G-------KATTSE 343 (352)
T ss_pred ---hhcCCCc-cCcHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHHcCCccCCCC----C-------CcCHHH
Confidence 9999999 9999999999999999985 7899999999999999999999998 7 699999
Q ss_pred HHHHHHHHH
Q 015002 398 FIDAVADDL 406 (414)
Q Consensus 398 ~~daV~~~l 406 (414)
|+|+|+++|
T Consensus 344 ~~~ai~~~l 352 (352)
T TIGR02089 344 VTEAVCNAL 352 (352)
T ss_pred HHHHHHhhC
Confidence 999999875
No 11
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=1.9e-104 Score=797.75 Aligned_cols=327 Identities=25% Similarity=0.257 Sum_probs=302.7
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHH
Q 015002 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (414)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~ 88 (414)
.++|++|||||||||||+++++||.+.+++|+|+++++|++++++||+++|++++++|+++|++||||+++|...
T Consensus 41 ~~~I~vipGDGIGpEV~~aa~~Vl~a~~~~ie~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~L~G~i~~p~~~----- 115 (372)
T PLN00118 41 PITATLFPGDGIGPEIAESVKQVFTAAGVPIEWEEHYVGTTVDPRTGSFLTWESLESVRRNKVGLKGPMATPIGK----- 115 (372)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHhcCCCeEEEEEeCcHHHHHhcCCcCCHHHHHHHHHCCEEEECCccCCccc-----
Confidence 378999999999999999999999877899999999999999999999999999999999999999999999532
Q ss_pred HhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccc
Q 015002 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (414)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (414)
+++|+|++|||+||||+|+||+++ +|++.++ .++|+|||||||||+|+|.+++.
T Consensus 116 ----~~~s~~~~LRk~ldLyaNvRPvr~--~pg~~~~~~~iD~vIVREnteG~Y~g~~~~~------------------- 170 (372)
T PLN00118 116 ----GHRSLNLTLRKELGLYANVRPCYS--LPGYKTRYDDVDLVTIRENTEGEYSGLEHQV------------------- 170 (372)
T ss_pred ----cccCchHHHHHHcCCeeeeccccc--CCCccCcccCceEEEEEecCCCcccceeeec-------------------
Confidence 467889999999999999999876 3444333 38999999999999999986531
Q ss_pred hhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCC
Q 015002 168 ELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (414)
Q Consensus 168 ~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~ 245 (414)
.++++.+ ++|||+++|||+|+||+||++|++ +||+|||+|||+.|||+|+++|+||+ ++|| +
T Consensus 171 ---------~~gv~~~~~v~Tr~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk~tdglf~e~~~eva-~eyP------d 234 (372)
T PLN00118 171 ---------VRGVVESLKIITRQASLRVAEYAFHYAKTHGRKRVSAIHKANIMKKTDGLFLKCCREVA-EKYP------E 234 (372)
T ss_pred ---------cCCeEEEEEecCHHHHHHHHHHHHHHHHHcCCCeEEEEECCccchhhhHHHHHHHHHHH-hhCC------C
Confidence 0356777 999999999999999999999965 69999999999999999999999996 6899 9
Q ss_pred eEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccC
Q 015002 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 324 (414)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaG 324 (414)
|++++++||++|||||++|++| ||||+|||||||||++|+++||+||+||+|+|+++ ++||||+||||| ||||
T Consensus 235 I~~~~~~VDa~a~~Lv~~P~~fDViVt~NLfGDILSDlaa~l~GglGlapSanig~~~-~a~FEpvHGSAP-----dIAG 308 (372)
T PLN00118 235 IVYEEVIIDNCCMMLVKNPALFDVLVMPNLYGDIISDLCAGLIGGLGLTPSCNIGENG-LALAEAVHGSAP-----DIAG 308 (372)
T ss_pred ceEEeeeHHHHHHHhccCcccCcEEEEcCcccchhhHHHHHhcCCcccCcceeecCCC-CeEEECCCCChh-----hhCC
Confidence 9999999999999999999999 99999999999999999999999999999999886 699999999999 9999
Q ss_pred CCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHHHHH
Q 015002 325 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVA 403 (414)
Q Consensus 325 k~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 403 (414)
||+ |||+|||||++|||+|||+ .++|++|++||.+++++| ++|+||| | .+||+||+|+|+
T Consensus 309 k~i-ANP~A~IlS~amML~~lG~-------~~~A~~I~~Av~~~l~~G~~~T~DlG----G-------~~sT~e~~dav~ 369 (372)
T PLN00118 309 KNL-ANPTALLLSAVMMLRHLKL-------NEQAEQIHNAILNTIAEGKYRTADLG----G-------SSTTTDFTKAIC 369 (372)
T ss_pred CCC-cCcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHHHHH
Confidence 999 9999999999999999985 789999999999999999 8999998 7 799999999999
Q ss_pred HHH
Q 015002 404 DDL 406 (414)
Q Consensus 404 ~~l 406 (414)
++|
T Consensus 370 ~~l 372 (372)
T PLN00118 370 DHL 372 (372)
T ss_pred hhC
Confidence 875
No 12
>PRK06451 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=8.5e-103 Score=795.55 Aligned_cols=355 Identities=21% Similarity=0.208 Sum_probs=306.3
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~-------~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~ 84 (414)
|++|||||||||||+++++||.+. +++|+|.++++|+++|++||+++|++++++|+++|++||||++||...
T Consensus 26 I~vipGDGIGpEV~~aa~~Vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~lp~etl~~ik~~daiL~GavgtP~~~- 104 (412)
T PRK06451 26 ILYVEGDGIGPEITHAAMKVINKAVEKAYGSDREIKWVEVLAGDKAEKLTGNRFPKESEELIEKYRVLLKGPLETPIGK- 104 (412)
T ss_pred EEEecCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECcccCCCCc-
Confidence 999999999999999999988532 268999999999999999999999999999999999999999999532
Q ss_pred HHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCCcce-eeeecC
Q 015002 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFVPE 161 (414)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~-~~~~~~ 161 (414)
+|+|+|+.|||+||||+|+||+++ ++++ |+++..++|||||||||||+|+|.+++...++..+ ..|..+
T Consensus 105 --------~~~s~~l~LRk~ldLyaNvRPvk~~pgl~sp~~~~~~iD~vIvREnTeG~Y~g~~~~~~~~~~~~~~~~~~~ 176 (412)
T PRK06451 105 --------GWKSINVAIRLMLDLYANIRPVKYIPGIESPLKNPEKIDLIIFRENTDDLYRGIEYPYDSEEAKKIRDFLRK 176 (412)
T ss_pred --------CCcChhHHHHHHcCCeEeeceeecCCCCCCcccCcCCccEEEEEeccCCeeecccccccccccccccccccc
Confidence 578999999999999999999976 4554 34333489999999999999999986432211110 111111
Q ss_pred -CCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcC
Q 015002 162 -GKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (414)
Q Consensus 162 -~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp 238 (414)
.+. .+ ..+++++ ++|||++++||+|+||+||++|++ +||+|||+|||+.|||+|+++|+|+++++||
T Consensus 177 ~~~~-----~~-----~~~~a~~~~~~t~~~~eRIar~AF~~A~~r~~kkVt~v~KaNVlk~t~glf~~~~~eva~~eyp 246 (412)
T PRK06451 177 ELGV-----EV-----EDDTGIGIKLISKFKTQRIARMAIKYAIDHKRKKVTIMHKGNVMKYTEGAFREWAYEVALKEFR 246 (412)
T ss_pred cccc-----cc-----ccceecceeeeeHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchhhHHHHHHHHHHHhCC
Confidence 000 00 1346777 999999999999999999999964 7999999999999999999999999755899
Q ss_pred C--------------ccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc
Q 015002 239 S--------------KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 303 (414)
Q Consensus 239 ~--------------~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~ 303 (414)
| +|+..+|+++++|||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++
T Consensus 247 d~~~~~~~~~~~y~~~~~~~~I~~~~~~vDa~~~~Lv~~P~~FDVivt~NlfGDILSDlaa~l~GglGl~pSanig~~-- 324 (412)
T PRK06451 247 DYVVTEEEVTKNYNGVPPSGKVIINDRIADNMFQQIIIRPDEYDIILAPNVNGDYISDAAGALVGNIGMLGGANIGDT-- 324 (412)
T ss_pred cccccccchhhccccccccCceEEEeeeHHHHHHHHhcCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--
Confidence 5 4555679999999999999999999999 9999999999999999999999999999999987
Q ss_pred eEEEccccCcccccccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhcc
Q 015002 304 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH 383 (414)
Q Consensus 304 ~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~ 383 (414)
.+||||+||||| ||||||+ |||+|||||++|||+|||+ .++|++|++||.+++++|++|+||+....
T Consensus 325 ~alFEpvHGSAP-----diAGk~i-ANP~a~IlS~amML~~lg~-------~~~A~~I~~Av~~vl~~G~~T~Dl~~~~g 391 (412)
T PRK06451 325 GGMFEAIHGTAP-----KYAGKNV-ANPTGIIKGGELMLRFMGW-------DKAADLIDKAIMESIKQKKVTQDLARFMG 391 (412)
T ss_pred CceeECCCCCcc-----ccCCCCC-cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCccccccCC
Confidence 499999999999 9999999 9999999999999999986 78999999999999999999999951000
Q ss_pred CCcCCcccccCHHHHHHHHHHHH
Q 015002 384 GSKMTREHYLNTEEFIDAVADDL 406 (414)
Q Consensus 384 G~~~~~~~~~sT~e~~daV~~~l 406 (414)
| +.++|+||+|+|+++|
T Consensus 392 g------~~~~T~e~~daI~~~l 408 (412)
T PRK06451 392 V------RALSTTEYTDELISII 408 (412)
T ss_pred C------CccCHHHHHHHHHHHH
Confidence 3 2489999999999999
No 13
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2e-102 Score=789.88 Aligned_cols=382 Identities=86% Similarity=1.303 Sum_probs=321.6
Q ss_pred CCccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCC
Q 015002 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (414)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp 80 (414)
||++||||+.|+++|||||||||+|+++++++++++++|+|+++++|+++|++||+++|++++++++++|++||||++||
T Consensus 1 ~~~~~~~~~~p~~~~~Gd~~~~~~~~~~~~~~~~~~~~i~~~~~d~G~~~~~~tg~~lp~e~le~~k~~da~lkGav~tp 80 (410)
T PLN00103 1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (410)
T ss_pred CCcccccccCCeEEecCCcchHHHHHHHHHHHhcCCCCeEEEEEcCCHHHHHHhCCcCCHHHHHHHHHCCEEEECCccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCC----CCCC----------------------CCCCCEEEEe
Q 015002 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP----RLIP----------------------GWTKPICIGR 134 (414)
Q Consensus 81 ~~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~----~l~~----------------------~~~iDivivR 134 (414)
...++.|.++.+.++|+|++|||+||||+|+|||.++++| ++.. +.++|+||||
T Consensus 81 ~~~~~~~~~~~~~~~s~n~~lRk~ldlyanvRP~~vk~~~~~~~g~~~~i~~~~~~~~~~~~~~d~v~~~~~~id~vivR 160 (410)
T PLN00103 81 DEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVP 160 (410)
T ss_pred ccccccccCccccccCchHHHHHHcCCeEEecchhccccCccCCCCCCceeecccccccccccceeccCCCCceEEEEEe
Confidence 5332112233345899999999999999999994444444 2221 1368889999
Q ss_pred eccCCccccccccccCCCcceeeeecCCCCccchhhhccccCCcceEEEee-eCHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 015002 135 HAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMY-NTDESIRAFAEASMNTAYQKKWPLYLST 213 (414)
Q Consensus 135 Enteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~va~~~~-~Tr~~~eRiar~AFe~A~~r~~~Vt~v~ 213 (414)
|||||+| ++... .| ++..++++ ++ +|+++++||+|+||+||++|+++||+||
T Consensus 161 ENTEg~y---e~~~~-------~~----------------~g~~~v~~-~~~~T~~~~~Riar~AFe~A~~r~~~vt~v~ 213 (410)
T PLN00103 161 EGKDEKT---ELEVY-------NF----------------TGAGGVAL-SMYNTDESIRAFAEASMNTAYQKKWPLYLST 213 (410)
T ss_pred cCCCcee---EEEee-------cc----------------CCCcceEE-EEEcCHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 9999999 22110 00 01133444 55 4999999999999999999988999999
Q ss_pred CCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCcccc
Q 015002 214 KNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLM 293 (414)
Q Consensus 214 KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGla 293 (414)
|+|||+.+||+|+++|+||++++|..+|++.+|++++++||++||+||++|++|||||+|||||||||++|+++||||++
T Consensus 214 KaNVlk~~dglf~~~~~eva~~~~~~eyp~~~I~~~~~lVDa~a~~lv~~P~~fViv~~NLfGDIlSDlaA~l~GslGla 293 (410)
T PLN00103 214 KNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLM 293 (410)
T ss_pred CCCCchhhHHHHHHHHHHHHHhhhhhhCCCCceEEEEeEHHHHHHHHhcCCCCCEEEEcccchHHHHHHHHHhcCchhhh
Confidence 99999999999999999998643333333446999999999999999999999999999999999999999999999999
Q ss_pred ccceecCCCceEEEccccCcccccccc-cccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC
Q 015002 294 TSVLVCPDGKTIEAEAAHGTVTRHYRV-HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 372 (414)
Q Consensus 294 pSanig~~~~~a~FEp~HGSAP~~~~~-dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G 372 (414)
||+|+|+++.++||||+|||||++|+. ||||||+ |||+|+|||++|||+|||+|+.+.++.++|++|++||.+|+++|
T Consensus 294 pSanig~~~~~~~FEp~HGSApd~~~~~diaGk~i-ANP~A~IlS~ammL~~l~~~~~~~g~~~~a~~i~~Av~~~l~~G 372 (410)
T PLN00103 294 TSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS-TNSIASIFAWSRGLAHRAKLDGNARLLDFTEKLEAACVGTVESG 372 (410)
T ss_pred hccccCCCCCcEEEeCCCCcCcccchhhhhcCCCc-cChHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHcC
Confidence 999999875237999999999954443 5999999 99999999999999999988777778999999999999999999
Q ss_pred CCccchhhhccCCcCCcccccCHHHHHHHHHHHHHHHh
Q 015002 373 KMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 410 (414)
Q Consensus 373 ~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~l~~~~ 410 (414)
++|+||+....|+...+++.++|+||+|+|+++|++.|
T Consensus 373 ~~T~Dl~~~~~gg~~~~~~~~~T~e~~daV~~~l~~~~ 410 (410)
T PLN00103 373 KMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410 (410)
T ss_pred CCCcccccccCCCcccCCCCcCHHHHHHHHHHHHHhhC
Confidence 99999941101221123345899999999999997653
No 14
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=100.00 E-value=2e-102 Score=780.99 Aligned_cols=336 Identities=21% Similarity=0.178 Sum_probs=298.6
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHH
Q 015002 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (414)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~ 86 (414)
+|++|||||||||||+++++||.+. +++|+|.++++|++++++||++||++++++|+++|++||||+++|.....+
T Consensus 1 ~i~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~l~G~v~~p~~~~~~ 80 (349)
T TIGR00169 1 KIAVLPGDGIGPEITAEALKVLKAVAERFGLKFEFEEHLIGGAAIDATGQPLPEETLKACKEADAVLLGAVGGPKWDNLP 80 (349)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHhhcCCceEEEEEeCCHHHHHHHCCCCCHHHHHHHHHCCEEEECcccCCCCCCCC
Confidence 5899999999999999999988633 689999999999999999999999999999999999999999999532100
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC---CCCCC--CCCCEEEEeeccCCccccccccccCCCcceeeeec
Q 015002 87 EFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (414)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~---~l~~~--~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~ 160 (414)
.-..++++ +++|||+||||+|+||+++ ++++ |+++. .++|+|||||||||+|+|+++.....
T Consensus 81 --~~~~~~~~-~~~LR~~ldlyanvRP~r~~~g~~~~~p~~~~~~~~iD~vivREntEG~Y~g~~~~~~~~--------- 148 (349)
T TIGR00169 81 --RDQRPEQG-LLKLRKSLDLFANLRPAKVFPSLEDLSPLKEEIAKGVDFVVVRELTGGIYFGEPKGRFGA--------- 148 (349)
T ss_pred --ccccchhh-HHHHHHHcCCeEEEEEeeccCCCCccCCCcccccCCceEEEEeeccCCeecCCCccccCC---------
Confidence 00011334 8999999999999999987 4665 33322 37999999999999999986521100
Q ss_pred CCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCC
Q 015002 161 EGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS 239 (414)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~ 239 (414)
+..+++++ ++|||+++|||+|+||+||++|+++||+|||+|||+ ++|+|+++|+||+ ++||
T Consensus 149 ---------------~~~~~a~~~~~~Tr~~~eRI~r~AF~~A~~r~~~Vt~v~KaNvlk-t~glf~~~~~eva-~~yP- 210 (349)
T TIGR00169 149 ---------------GGEGEAWDTEVYTKPEIERIARVAFEMARKRRKKVTSVDKANVLE-SSRLWRKTVEEIA-KEYP- 210 (349)
T ss_pred ---------------CCcceEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECCcccc-hhHHHHHHHHHHH-hhCC-
Confidence 01457778 999999999999999999999988999999999999 9999999999996 6999
Q ss_pred ccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccc
Q 015002 240 KFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHY 318 (414)
Q Consensus 240 ~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~ 318 (414)
+|++++++||+||||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ ++||||+|||||
T Consensus 211 -----~I~~~~~~vDa~~~~Lv~~P~~fDViv~~NlfGDILSDlaa~l~GglGlapSanig~~~-~a~FEp~HGSAP--- 281 (349)
T TIGR00169 211 -----DVELEHQYIDNAAMQLVKSPTQFDVVVTGNIFGDILSDEASVIPGSLGMLPSASLGSDG-FGLFEPVHGSAP--- 281 (349)
T ss_pred -----CceEEeeeHHHHHHHHHhCccCceEEEEcCcccchhhHHHHHhcCCCCCCceEEECCCC-CEEEECCCCChh---
Confidence 99999999999999999999999 99999999999999999999999999999999775 699999999999
Q ss_pred cccccCCCCccChhHHHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHH
Q 015002 319 RVHQKGGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEE 397 (414)
Q Consensus 319 ~~dIaGk~i~ANP~a~IlS~ammL~~-lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e 397 (414)
||||||+ |||+|||||++|||+| +|+ .++|++|++||++|+++|++|+||| | .++|+|
T Consensus 282 --diAGk~i-ANP~a~IlS~amML~~~lg~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~t~e 340 (349)
T TIGR00169 282 --DIAGKGI-ANPIAQILSAAMMLRYSFNL-------EEAADAIEAAVKKVLAEGYRTPDLG----S-------SATTEV 340 (349)
T ss_pred --HhcCCCC-CChHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHcCCCccccC----C-------CcchHH
Confidence 9999999 9999999999999999 785 7999999999999999999999998 7 689999
Q ss_pred HHHHHHHHH
Q 015002 398 FIDAVADDL 406 (414)
Q Consensus 398 ~~daV~~~l 406 (414)
|+++|++.|
T Consensus 341 ~t~av~~~~ 349 (349)
T TIGR00169 341 GTAEMGEEL 349 (349)
T ss_pred HHHHHHhcC
Confidence 999999764
No 15
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-102 Score=779.27 Aligned_cols=331 Identities=18% Similarity=0.165 Sum_probs=296.7
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcC---CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHH
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFP---FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~---~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~ 86 (414)
++|++|||||||||||+++++||.+. +++|+|.++++|+++++++|+++|++++++|+++|++||||+++|..+.
T Consensus 5 ~~I~vipGDGIGpEv~~~a~~Vl~a~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gavg~p~~~~-- 82 (344)
T PRK03437 5 MKLAVIPGDGIGPEVVAEALKVLDAVAAGGPGVETTEYDLGARRYLRTGETLPDSVLAELRQHDAILLGAIGDPSVPS-- 82 (344)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHCCcCCHHHHHHHHHCCEEEEeecCCCCCCC--
Confidence 68999999999999999999998644 8999999999999999999999999999999999999999999995321
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCCCC
Q 015002 87 EFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (414)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (414)
..+.+|+++.|||+||||+|+||+++ ++++ |++...++|+|||||||||+|+|.++... ++
T Consensus 83 ----~~~~~~~~~~LRk~ldLyaNvRP~r~~pg~~sp~k~~~~iD~vivREnteG~Y~g~~~~~~-~~------------ 145 (344)
T PRK03437 83 ----GVLERGLLLKLRFALDHYVNLRPSKLYPGVTSPLAGPGDIDFVVVREGTEGPYTGNGGALR-VG------------ 145 (344)
T ss_pred ----CCcccchHHHHHHHcCCeEEEEEeecCCCCCCcCCCCCCCCEEEEEECCCccccCCccccc-CC------------
Confidence 01357789999999999999999986 4555 34322489999999999999999764211 10
Q ss_pred ccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccc
Q 015002 165 EKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (414)
Q Consensus 165 ~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~ 242 (414)
. .++++++ ++|||++++||+|+||+||++|+ ++||+|||+|||+.|+|||+++|+||+ ++||
T Consensus 146 ----------~-~~~~a~~~~~~Tr~~~~RIa~~AF~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp---- 209 (344)
T PRK03437 146 ----------T-PHEVATEVSVNTAFGVERVVRDAFERAQKRPRKHLTLVHKTNVLTFAGDLWQRTVDEVA-AEYP---- 209 (344)
T ss_pred ----------C-cceeEEEEEEecHHHHHHHHHHHHHHHHhCCCCeEEEEECCccccccchHHHHHHHHHH-hhCC----
Confidence 0 1457888 99999999999999999999995 469999999999999999999999996 7999
Q ss_pred cCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc-eEEEccccCcccccccc
Q 015002 243 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK-TIEAEAAHGTVTRHYRV 320 (414)
Q Consensus 243 ~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~-~a~FEp~HGSAP~~~~~ 320 (414)
+|++++++||++|||||++|++| ||||+|||||||||++|+++||+|++||+|+|+++. ++||||+|||||
T Consensus 210 --dV~~~~~~vDa~~~~Lv~~P~~fDVIVt~NlfGDILSDlaa~l~GglGl~pSanig~~g~~~a~FEp~HGSAP----- 282 (344)
T PRK03437 210 --DVTVDYQHVDAATIFMVTDPSRFDVIVTDNLFGDIITDLAAAVTGGIGLAASGNINPTGTNPSMFEPVHGSAP----- 282 (344)
T ss_pred --CceEeehhHHHHHHHHhcCcccCcEEEEcccchhhhhHHHHHhcCCccccceeeecCCCCcceeEecCCCCch-----
Confidence 99999999999999999999999 999999999999999999999999999999997642 499999999999
Q ss_pred cccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHH
Q 015002 321 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID 400 (414)
Q Consensus 321 dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 400 (414)
||||||+ |||+|||||++|||+|||+ .++|++|++||++++++| +| | .+||+||+|
T Consensus 283 diAGk~i-ANP~a~IlS~amML~~lg~-------~~~a~~I~~Av~~~l~~g-----~g----g-------~~~T~e~~~ 338 (344)
T PRK03437 283 DIAGQGI-ADPTAAILSVALLLDHLGE-------EDAAARIEAAVEADLAER-----GK----M-------GRSTAEVGD 338 (344)
T ss_pred hhcCCCc-cChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHhc-----CC----C-------CcCHHHHHH
Confidence 9999999 9999999999999999986 789999999999999998 45 6 789999999
Q ss_pred HHHHHH
Q 015002 401 AVADDL 406 (414)
Q Consensus 401 aV~~~l 406 (414)
+|+++|
T Consensus 339 ai~~~l 344 (344)
T PRK03437 339 RIAARL 344 (344)
T ss_pred HHHhhC
Confidence 999875
No 16
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-102 Score=782.38 Aligned_cols=341 Identities=21% Similarity=0.192 Sum_probs=304.5
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCch
Q 015002 8 VANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (414)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~ 83 (414)
|.++|++|||||||||||++++++|.+. +++|+|.++++|.++++++|++||++++++|+++|++||||+++|.+.
T Consensus 1 ~~~~I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~~~~~~G~~~~~~~G~~lp~~tl~~~~~~da~L~Gav~~p~~~ 80 (358)
T PRK00772 1 MTYKIAVLPGDGIGPEVMAEAVKVLDAVAEKFGFDFEFEEALVGGAAIDAHGVPLPEETLEACRAADAVLLGAVGGPKWD 80 (358)
T ss_pred CceEEEEECCCcccHHHHHHHHHHHHHHHhhcCCceEEEEecCcHHHHHHHCCCCCHHHHHHHHHCCEEEECccCCCCCC
Confidence 3478999999999999999999998633 689999999999999999999999999999999999999999999532
Q ss_pred hHHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC---CCCCC--CCCCEEEEeeccCCccccccccccCCCcceee
Q 015002 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP---RLIPG--WTKPICIGRHAFGDQYRATDTVIQGPGKLKLV 157 (414)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~---~l~~~--~~iDivivREnteg~Y~g~e~~~~~~g~~~~~ 157 (414)
..+ ....+.+| |++|||+||||+|+||+++ +++| |+++. .++|+|||||||||+|+|.++....
T Consensus 81 ~~~--~~~~~~~~-~~~LR~~ldlyanvRP~r~~pg~~~~~plk~~~~~~iD~vivREntEG~Y~g~~~~~~~------- 150 (358)
T PRK00772 81 NLP--PDVRPERG-LLALRKELGLFANLRPAKLYPGLADASPLKPEIVAGLDILIVRELTGGIYFGEPRGREG------- 150 (358)
T ss_pred CCC--ccCCChhh-HHHHHHHcCCeEEEeEeecCCCCCCcCCCcccccCCccEEEEecccCCeecCCcccccC-------
Confidence 100 00113456 8999999999999999987 5665 44433 2799999999999999998653210
Q ss_pred eecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhh
Q 015002 158 FVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (414)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~ 236 (414)
+ .+ .+++++ ++|||++++||+|+||+||++|+++||+|||+|||+ ++|+|+++|+||+ ++
T Consensus 151 -----~-----------~~-~~~a~~~~~iTr~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~~glf~~~~~eva-~e 211 (358)
T PRK00772 151 -----L-----------GG-EERAFDTMVYTREEIERIARVAFELARKRRKKVTSVDKANVLE-SSRLWREVVTEVA-KE 211 (358)
T ss_pred -----C-----------CC-ceeEEEEEEeeHHHHHHHHHHHHHHHHHcCCcEEEEECccccc-cchHHHHHHHHHH-hH
Confidence 0 01 457777 999999999999999999999988999999999999 9999999999996 69
Q ss_pred cCCccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccc
Q 015002 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (414)
Q Consensus 237 yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP 315 (414)
|| +|++++++||+++|+||++|++| ||||+|||||||||++|+++||+|++||+|+|+++ ++||||+|||||
T Consensus 212 yp------~i~~~~~~vDa~~~~lv~~P~~fDViv~~NlfGDIlSDlaa~l~GglGl~psanig~~~-~a~FEp~HGSAp 284 (358)
T PRK00772 212 YP------DVELSHMYVDNAAMQLVRNPKQFDVIVTENLFGDILSDEAAMLTGSLGMLPSASLGESG-PGLYEPIHGSAP 284 (358)
T ss_pred CC------CceEEEEeHHHHHHHHhhCcccCeEEeecCcccccccHHHHHhcCCCCCCcceEeCCCC-ceeeecCCCchh
Confidence 99 99999999999999999999999 99999999999999999999999999999999876 699999999999
Q ss_pred ccccccccCCCCccChhHHHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHHHhcCCCccch---hhhccCCcCCccc
Q 015002 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDL---ALIIHGSKMTREH 391 (414)
Q Consensus 316 ~~~~~dIaGk~i~ANP~a~IlS~ammL~~-lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dl---g~~~~G~~~~~~~ 391 (414)
||||||+ |||+|+|||++|||+| ||+ .++|++|++||.+++++|++|+|| | |
T Consensus 285 -----diAGk~~-aNP~a~Ils~ammL~~~lg~-------~~~a~~i~~Av~~~l~~g~~T~Dl~~~g----g------- 340 (358)
T PRK00772 285 -----DIAGKGI-ANPIATILSAAMMLRYSLGL-------EEAADAIEAAVEKVLAQGYRTADIAEGG----G------- 340 (358)
T ss_pred -----hhcCCCC-cCCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHcCCcCcccccCC----C-------
Confidence 9999999 9999999999999999 986 799999999999999999999999 5 5
Q ss_pred ccCHHHHHHHHHHHHHH
Q 015002 392 YLNTEEFIDAVADDLRA 408 (414)
Q Consensus 392 ~~sT~e~~daV~~~l~~ 408 (414)
.+||+||+|+|+++|.+
T Consensus 341 ~~~T~e~~~av~~~l~~ 357 (358)
T PRK00772 341 KVSTSEMGDAILAALAE 357 (358)
T ss_pred CcCHHHHHHHHHHHhhc
Confidence 79999999999999853
No 17
>PRK09222 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=1.8e-102 Score=802.53 Aligned_cols=337 Identities=23% Similarity=0.241 Sum_probs=305.9
Q ss_pred ecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcC-CCCCHHHHHHHHcCCeeeecccCCCCchhHH
Q 015002 8 VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVK 86 (414)
Q Consensus 8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~ 86 (414)
++++|++|||||||||||++++++|.+.+++|+|+++++|.++|+++| +++|++++++|+++|++||||++||...
T Consensus 3 ~~~~I~vipGDGIGPEV~~a~~~VL~a~~~~i~~~~~~~G~~~~~~~g~~~lp~~~~~~i~~~da~LkG~i~tP~~~--- 79 (482)
T PRK09222 3 EKTPITVAYGDGIGPEIMEAVLKILEAAGAPLEIETIEIGEKVYKKGWTSGISPSAWESIRRTKVLLKAPITTPQGG--- 79 (482)
T ss_pred CcceEEEECCCcccHHHHHHHHHHHHhcCCceEEEEEcCCHHHHHhcCCCCCCHHHHHHHHHCCEEEEccccCCCcc---
Confidence 358999999999999999999999988889999999999999999987 7999999999999999999999999632
Q ss_pred HHHhhhcCCCcchhHhhhcCceEEeeeeeccCC-CCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCC
Q 015002 87 EFVLKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD 164 (414)
Q Consensus 87 e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~-~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~ 164 (414)
+++|+|++|||.||||+|+||+++ + |++.++ .++|+|||||||||+|+|+|++.
T Consensus 80 ------~~~s~~~~LRk~ldLYaNvRP~r~--~~pgv~~~~~~iD~vIVRENtEG~Y~G~e~~~---------------- 135 (482)
T PRK09222 80 ------GYKSLNVTLRKTLGLYANVRPCVS--YHPFVETKHPNLDVVIIRENEEDLYAGIEHRQ---------------- 135 (482)
T ss_pred ------CccchHHHHHHHcCCeEEeeeEEe--cCCCCCCCCCCcCEEEEEeccCCeeccceeec----------------
Confidence 568889999999999999999875 3 443333 28999999999999999987631
Q ss_pred ccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccc
Q 015002 165 EKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFE 242 (414)
Q Consensus 165 ~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~ 242 (414)
.++++++ ++|||+++|||+|+||+||++|++ +||++||+|||+.|||+|+++|+||+ ++||
T Consensus 136 ------------~~~~~~~~k~iTr~~~eRI~r~AFe~A~~r~rkkVt~v~KaNVmk~tdglf~~v~~eva-~eyP---- 198 (482)
T PRK09222 136 ------------TPDVYQCLKLISRPGSEKIIRYAFEYARANGRKKVTCLTKDNIMKLTDGLFHKVFDEIA-KEYP---- 198 (482)
T ss_pred ------------CCCeeeEeeccCHHHHHHHHHHHHHHHHhcCCCeEEEEECCCcccccchHHHHHHHHHH-hhCC----
Confidence 1356777 999999999999999999999975 69999999999999999999999996 7999
Q ss_pred cCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccc
Q 015002 243 AAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH 321 (414)
Q Consensus 243 ~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d 321 (414)
+|++++++||++||+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| |
T Consensus 199 --dI~~~~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaa~l~GslGlapSanig~~--~amFEpvHGSAP-----d 269 (482)
T PRK09222 199 --DIEAEHYIVDIGAARLATNPENFDVIVTPNLYGDILSDIAAEISGSVGLAGSANIGEE--YAMFEAVHGSAP-----D 269 (482)
T ss_pred --CceEeeeeHHHHHHHHhcCcccceEEEEcccccchhhHHHHHhcCCcccccceecCCC--ceeeECCCCCch-----h
Confidence 99999999999999999999999 9999999999999999999999999999999987 599999999999 9
Q ss_pred ccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHH
Q 015002 322 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDA 401 (414)
Q Consensus 322 IaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 401 (414)
|||||+ |||+|+|||++|||+|||+ .++|++|++||.+|+++|++|+||+ |.. .+...+||+||+|+
T Consensus 270 IAGk~i-ANP~a~IlSaamML~hlG~-------~~~A~~I~~Av~~tl~~G~~T~Dl~----g~~-~~~~~~~T~e~~~a 336 (482)
T PRK09222 270 IAGKNI-ANPSGLLNAAVMMLVHIGQ-------FDIAELIENAWLKTLEDGIHTADIY----NEG-VSKKKVGTKEFAEA 336 (482)
T ss_pred hcCCCc-cCcHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCCCcccC----CCC-CCCCCcCHHHHHHH
Confidence 999999 9999999999999999986 7899999999999999999999995 310 01125899999999
Q ss_pred HHHHHHHHh
Q 015002 402 VADDLRARL 410 (414)
Q Consensus 402 V~~~l~~~~ 410 (414)
|+++|.+..
T Consensus 337 Vi~~l~~~p 345 (482)
T PRK09222 337 VIENLGQKP 345 (482)
T ss_pred HHHHHhcCc
Confidence 999997543
No 18
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=100.00 E-value=3.2e-102 Score=798.16 Aligned_cols=332 Identities=24% Similarity=0.230 Sum_probs=301.5
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcC-CCCCHHHHHHHHcCCeeeecccCCCCchhHHHHH
Q 015002 11 PIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATD-DKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (414)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g-~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~ 89 (414)
+|++|||||||||||++++++|.+.+++|+|+++++|+++|+++| +++|++++|+|+++|++||||++||.+.
T Consensus 2 ~I~vipGDGIGPEV~~aa~~VL~a~~~~i~~~~~~~G~~~~~~~gg~~lpdetl~~i~~~da~LkG~i~tp~~~------ 75 (473)
T TIGR02924 2 PITVAYGDGIGPEIMEAVLLILKEAEAPIDIETIEIGEKVYKKGWPSGISPSSWESIRRTKVLLKAPITTPQGG------ 75 (473)
T ss_pred eEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHhhCCCCCCHHHHHHHHHCCEEEECcccCCCcc------
Confidence 699999999999999999999987889999999999999999995 8999999999999999999999999642
Q ss_pred hhhcCCCcchhHhhhcCceEEeeeeeccCC-CCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccc
Q 015002 90 LKQMWKSPNGTIRNILNGTVFREPIICKNV-PRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (414)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~-~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (414)
+.+|+|++|||.||||+|+||+++ + |.+.+. .++|+|||||||||+|+|+|++..
T Consensus 76 ---~~~s~~~~LRk~ldLYANvRPv~~--~~p~~~~~~~~vDiVIVRENtEGlY~G~e~~~~------------------ 132 (473)
T TIGR02924 76 ---GHKSLNVTLRKTLGLYANIRPCVS--YHPFIETKSPNLNIVIVRENEEDLYTGIEYRQT------------------ 132 (473)
T ss_pred ---CcccHHHHHHHHcCCeEEEEEeec--cCCCCCCccCCcCEEEEEeccCceecCceeecc------------------
Confidence 467889999999999999999875 3 333333 289999999999999999876420
Q ss_pred hhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCC
Q 015002 168 ELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (414)
Q Consensus 168 ~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~ 245 (414)
.+++.+ ++|||+++|||+|+||+||++|++ +||++||+|||+.|||+|+++|+||+ ++|| +
T Consensus 133 ----------~~~~~~~kviTr~g~eRI~r~AFe~A~~r~rkkVT~v~KaNVmk~tdglf~e~~~eva-~eyP------d 195 (473)
T TIGR02924 133 ----------PDTYECTKLITRSGSEKICRYAFEYARKHNRKKVTCLTKDNIMKMTDGIFHKIFDKIA-AEYP------D 195 (473)
T ss_pred ----------CChheEeEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccccchhHHHHHHHHH-hhCC------C
Confidence 245556 999999999999999999999965 69999999999999999999999996 6999 9
Q ss_pred eEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccC
Q 015002 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKG 324 (414)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaG 324 (414)
|++++++||++||+|+++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||+||||| ||||
T Consensus 196 I~~e~~~VDa~a~~Lv~~P~~FDVIVt~NLfGDILSDlaA~l~GslGlapSaNiG~~--~amFEpvHGSAP-----dIAG 268 (473)
T TIGR02924 196 IESEHYIVDIGMARLATNPENFDVIVTPNLYGDILSDVAAEISGSVGLAGSANIGEE--YAMFEAVHGSAP-----DIAG 268 (473)
T ss_pred cEEeeHHHHHHHHHHhhCcccceEEEEccccchhhhHHHHHhcCCcCcccceecCCC--cceeecCCCchh-----hhCC
Confidence 9999999999999999999999 9999999999999999999999999999999987 599999999999 9999
Q ss_pred CCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHHHHH
Q 015002 325 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 404 (414)
Q Consensus 325 k~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 404 (414)
||+ |||+|||||++|||+|||+ .++|++|++||.+|+++|++|+||+.. | .+...+||+||+|+|++
T Consensus 269 k~i-ANP~a~IlSaamML~hLG~-------~~~A~~I~~AV~~vl~~G~~T~Dl~~~--~---~~gg~~sT~e~~daVi~ 335 (473)
T TIGR02924 269 QNI-ANPSGLLNAAIQMLVHIGQ-------SDIAQLIYNAWLKTLEDGVHTADIYNE--K---TSKQKVGTKEFAEAVTA 335 (473)
T ss_pred CCc-cChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcCcccccc--c---cCCCCcCHHHHHHHHHH
Confidence 999 9999999999999999996 789999999999999999999999510 1 00126899999999999
Q ss_pred HHHH
Q 015002 405 DLRA 408 (414)
Q Consensus 405 ~l~~ 408 (414)
+|.+
T Consensus 336 ~l~~ 339 (473)
T TIGR02924 336 NLGK 339 (473)
T ss_pred Hhcc
Confidence 9964
No 19
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=100.00 E-value=9.1e-102 Score=774.72 Aligned_cols=321 Identities=22% Similarity=0.229 Sum_probs=294.6
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHH
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~ 89 (414)
++|++|||||||||||++++++|.+.+++|+|+++++|++ |.++|++++++++++|++||||+++|.+.
T Consensus 31 ~~I~vipGDGIGpEV~~~a~~vl~a~~~~i~~~~~~~G~~-----~~~lp~~~l~~~~~~da~L~Gavg~p~~~------ 99 (360)
T PLN00123 31 RAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFERYEVHGD-----MKKVPEEVLESIRRNKVCLKGGLATPVGG------ 99 (360)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhCCCceEEEEEccCCC-----CccCCHHHHHHHHHCCEEEEccccCCCCc------
Confidence 6899999999999999999999987789999999999987 58999999999999999999999999532
Q ss_pred hhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccch
Q 015002 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (414)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (414)
+.+|+|+.|||+||||+|+||+++ +|++..+ .++|+|||||||||+|+|.+++.
T Consensus 100 ---~~~s~~l~LR~~ldLyaNvRP~k~--~pg~~~~~~~iD~viVREnteG~Y~g~~~~~-------------------- 154 (360)
T PLN00123 100 ---GVSSLNVQLRKELDLFASLVNCFN--LPGLPTRHENVDIVVIRENTEGEYSGLEHEV-------------------- 154 (360)
T ss_pred ---CccchHHHHHHHcCCEEEEEEeec--CCCCCCccCCCCEEEEEeCCCceeccceeec--------------------
Confidence 356789999999999999999876 3444333 38999999999999999986531
Q ss_pred hhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCe
Q 015002 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (414)
Q Consensus 169 ~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I 246 (414)
..+++++ ++|||+++|||+|+||+||++|++ +||+|||+|||+.|||||+++|+||+ ++|| +|
T Consensus 155 --------~~g~~~~~~v~Tr~~~eRIar~AF~~A~~r~rkkVt~v~KaNvl~~t~glf~~~~~eva-~eyP------dV 219 (360)
T PLN00123 155 --------VPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVA-KKYP------GI 219 (360)
T ss_pred --------CCCceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCccccchhhHHHHHHHHHH-hhCC------Cc
Confidence 0346667 999999999999999999999854 79999999999999999999999996 7899 99
Q ss_pred EEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEcccc--Ccc--ccccccc
Q 015002 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAH--GTV--TRHYRVH 321 (414)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~H--GSA--P~~~~~d 321 (414)
++++++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+| ||| | |
T Consensus 220 ~~~~~~VDa~~~~Lv~~P~~fDViVt~NlfGDILSDlaa~l~GglGl~pSanig~~--~a~FEpvh~hGSA~~P-----d 292 (360)
T PLN00123 220 KYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAD--HAVFEQGASAGNVGNE-----K 292 (360)
T ss_pred eEeeeeHHHHHHHHhhCcccCcEEEEcCcccchhhhHHHHhcCCcCccceEeeCCC--ceEEEecccCCCcCCc-----c
Confidence 999999999999999999999 9999999999999999999999999999999987 59999976 999 9 9
Q ss_pred ccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHH
Q 015002 322 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFID 400 (414)
Q Consensus 322 IaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 400 (414)
|||||+ |||+|||||++|||+|||+ .++|++|++||.+++++| ++|+||| | .+||+||+|
T Consensus 293 IAGk~i-ANP~a~IlS~amML~~lG~-------~~~A~~I~~AV~~~l~~G~~~T~DlG----G-------~~sT~e~~~ 353 (360)
T PLN00123 293 LVEQKK-ANPVALLLSSAMMLRHLQF-------PSFADRLETAVKRVIAEGKYRTKDLG----G-------SSTTQEVVD 353 (360)
T ss_pred ccCCCc-cChHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHHcCCccCcccC----C-------CcCHHHHHH
Confidence 999999 9999999999999999986 789999999999999999 8999998 7 799999999
Q ss_pred HHHHHHH
Q 015002 401 AVADDLR 407 (414)
Q Consensus 401 aV~~~l~ 407 (414)
+|+++|+
T Consensus 354 ai~~~l~ 360 (360)
T PLN00123 354 AVIANLD 360 (360)
T ss_pred HHHHhhC
Confidence 9999873
No 20
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=100.00 E-value=2.5e-101 Score=769.99 Aligned_cols=324 Identities=21% Similarity=0.227 Sum_probs=296.8
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHH
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~ 89 (414)
++|++|||||||||||++++++|.+.+++|+|+++++|++ +++|+++|++++++++++|++||||+++|...+
T Consensus 4 ~~i~vlpGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~--~~~g~~lp~~~l~~~~~~da~l~Gav~~p~~~~----- 76 (333)
T TIGR00175 4 YTVTLIPGDGIGPEISGSVKKIFRAANVPIEFEEIDVSPQ--TDGKTEIPDEAVESIKRNKVALKGPLETPIGKG----- 76 (333)
T ss_pred EEEEEECCCcccHHHHHHHHHHHHhCCCceEEEEEecChh--hccCCcCCHHHHHHHHHCCEEEEcccCCccccc-----
Confidence 5799999999999999999999987789999999999997 668999999999999999999999999985321
Q ss_pred hhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCC-CCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccch
Q 015002 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPG-WTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (414)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~-~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (414)
.++|+|++|||+||||+|+||+|+ +|++.++ .++|+|||||||||+|+|.+++.
T Consensus 77 ---~~~s~~~~lR~~ldlyanvRP~k~--~pg~~~~~~~iD~vivREnteG~Y~g~~~~~-------------------- 131 (333)
T TIGR00175 77 ---GHRSLNVALRKELDLYANVVHCKS--LPGFKTRHEDVDIVIIRENTEGEYSGLEHES-------------------- 131 (333)
T ss_pred ---cccchhHHHHHHcCCEEEeEEecC--CCCCCCCCCCcCEEEEEEeCCCcccceeEec--------------------
Confidence 378899999999999999999875 3444433 37999999999999999976531
Q ss_pred hhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCe
Q 015002 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (414)
Q Consensus 169 ~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I 246 (414)
.++++.+ ++|||+++|||+|+||+||++|++ +||++||+|||+.|||+|+++|+|++ ++|| +|
T Consensus 132 --------~~~~~~~~~~~Tr~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp------~v 196 (333)
T TIGR00175 132 --------VPGVVESLKVITRDKSERIARYAFEYARKNGRKKVTAVHKANIMKLADGLFLNVCREVA-KEYP------DI 196 (333)
T ss_pred --------cCCeEEEEEecCHHHHHHHHHHHHHHHHhcCCCeEEEEECCccchhhHHHHHHHHHHHH-HHCC------CC
Confidence 0356777 999999999999999999999965 59999999999999999999999997 6899 99
Q ss_pred EEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccc-cCcccccccccccC
Q 015002 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAA-HGTVTRHYRVHQKG 324 (414)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~-HGSAP~~~~~dIaG 324 (414)
++++++||+|+|+||++|++| ||||+|||||||||++|+++|||||+||+|+|++ ++||||+ ||||| ||||
T Consensus 197 ~~~~~~vDa~~~~lv~~P~~fdViVt~NlfGDILSDlaa~l~GslGl~pSanig~~--~a~fEp~~hGSAp-----diaG 269 (333)
T TIGR00175 197 TFESMIVDNTCMQLVSRPSQFDVMVMPNLYGNILSNLGAGLVGGPGLVPGANIGRD--YAVFEPGVRHTGP-----DIAG 269 (333)
T ss_pred eeeeeeHHHHHHHHhcCcccccEEEEccccchhhhHHHHHhcCCcccCceeEEcCC--CceEeccCCCCch-----hhCC
Confidence 999999999999999999999 9999999999999999999999999999999987 5999995 59999 9999
Q ss_pred CCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHHHHH
Q 015002 325 GETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVA 403 (414)
Q Consensus 325 k~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 403 (414)
||+ |||+|+|||++|||+|||+ .++|++|++||.+++++| ++|+||| | .+||+||+++|+
T Consensus 270 k~i-aNP~a~Ils~ammL~~lG~-------~~~a~~i~~Av~~~l~~G~~~T~DlG----G-------~~~T~e~~~ai~ 330 (333)
T TIGR00175 270 QNI-ANPTALILSSVMMLNHLGL-------KEHADRIQKAVLSTIAEGKNRTKDLG----G-------TATTSDFTEAVI 330 (333)
T ss_pred CCc-cChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCccChhcC----C-------CcCHHHHHHHHH
Confidence 999 9999999999999999985 789999999999999999 8999998 7 799999999999
Q ss_pred HHH
Q 015002 404 DDL 406 (414)
Q Consensus 404 ~~l 406 (414)
++|
T Consensus 331 ~~l 333 (333)
T TIGR00175 331 KRL 333 (333)
T ss_pred hhC
Confidence 875
No 21
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=100.00 E-value=2.6e-101 Score=785.57 Aligned_cols=359 Identities=21% Similarity=0.219 Sum_probs=304.5
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCC--CCCHHHHHHHHcCCeeeecccCCCCc
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~~dai~~~~v~lkg~~~tp~~ 82 (414)
|++|||||||||||++++++|.+. +++|+|+++++|+++|+++|+ ++|++++++|+++|++||||++||..
T Consensus 22 I~vipGDGIGpEV~~aa~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~G~i~tp~~ 101 (409)
T PRK07006 22 IPFIEGDGIGPDITPAMLKVVDAAVEKAYKGERKISWMEIYAGEKATKVYGEDVWLPEETLDLIREYRVAIKGPLTTPVG 101 (409)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHhhCCcCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999988532 259999999999999999999 99999999999999999999999953
Q ss_pred hhHHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCC-cceeeee
Q 015002 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPG-KLKLVFV 159 (414)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g-~~~~~~~ 159 (414)
. +++|+|+.|||+||||+|+||+++ ++++ |++...++|||||||||||+|+|.++....++ ...+.|.
T Consensus 102 ~---------~~~s~~l~LR~~ldLyaNvRPvk~~pgl~~plk~~~~iD~vIvREnteG~Y~g~~~~~~~~~~~~~~~~~ 172 (409)
T PRK07006 102 G---------GIRSLNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENSEDIYAGIEWKAGSAEAKKVIKFL 172 (409)
T ss_pred c---------CccChHHHHHHHcCCEEEEEEEecCCCCCCCCCCCCCCCEEEEEeccCCeecccccccCCcccceeeecc
Confidence 2 467889999999999999999986 5665 44432389999999999999999876432221 1111222
Q ss_pred cCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhc
Q 015002 160 PEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (414)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~y 237 (414)
.... +.++.++. .+.+++ ++|||+++|||+|+||+||++|++ +||+|||+|||+.|||+|++|+.|||+++|
T Consensus 173 ~~~~----~~~~~~~~--~~~a~~~~v~Tr~~~eRi~r~AFe~A~~r~rkkVt~v~KaNVlk~tdglf~~~~~eva~~ey 246 (409)
T PRK07006 173 QEEM----GVKKIRFP--ETSGIGIKPVSEEGTERLVRAAIEYAIDNDRKSVTLVHKGNIMKFTEGAFKDWGYQLAEEEF 246 (409)
T ss_pred cccc----Cccccccc--ccceEEEEEecHHHHHHHHHHHHHHHHhcCCCcEEEEECCCccccchHHHHHHHHHHHHHHh
Confidence 1100 01111111 356777 999999999999999999999964 799999999999999999999889986579
Q ss_pred CCcccc-------------CCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc
Q 015002 238 KSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 303 (414)
Q Consensus 238 p~~~~~-------------~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~ 303 (414)
|++|.. .+|++++++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~p~v~~~~~~vDa~~~~lv~~P~~fDVIvt~NlfGDILSDlaa~l~GglGlapSanig~~-- 324 (409)
T PRK07006 247 GDELIDGGPWDKIKNPETGKEIIVKDSIADAFLQQILLRPAEYDVIATMNLNGDYISDALAAQVGGIGIAPGANINDG-- 324 (409)
T ss_pred hhhhhccccccccccccCCCCceeehHHHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcccceeCCC--
Confidence 544432 289999999999999999999999 9999999999999999999999999999999966
Q ss_pred eEEEccccCcccccccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhcc
Q 015002 304 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH 383 (414)
Q Consensus 304 ~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~ 383 (414)
++||||+||||| ||||||+ |||+|+|||++|||+|||+ .++|++|++||.+++++|++|+||+....
T Consensus 325 ~a~FEpvHGSAP-----diAGk~i-ANP~a~IlS~amML~~lG~-------~~~A~~Ie~Av~~~l~~G~~T~Dl~~~~~ 391 (409)
T PRK07006 325 HAIFEATHGTAP-----KYAGLDK-VNPGSVILSAEMMLRHMGW-------TEAADLIIKSMEKTIASKTVTYDFARLME 391 (409)
T ss_pred ceEEECCCCcch-----hhCCCCC-cChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhcCCccccccccCC
Confidence 699999999999 9999999 9999999999999999986 78999999999999999999999951111
Q ss_pred -CCcCCcccccCHHHHHHHHHHHH
Q 015002 384 -GSKMTREHYLNTEEFIDAVADDL 406 (414)
Q Consensus 384 -G~~~~~~~~~sT~e~~daV~~~l 406 (414)
| +.++|+||+|+|+++|
T Consensus 392 gg------~~~~T~e~~daI~~~l 409 (409)
T PRK07006 392 GA------TEVKCSEFGDALIKNM 409 (409)
T ss_pred CC------cccCHHHHHHHHHhhC
Confidence 3 2489999999999875
No 22
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=100.00 E-value=1.5e-100 Score=782.91 Aligned_cols=360 Identities=21% Similarity=0.226 Sum_probs=303.8
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcC--CCCCHHHHHHHHcCCeeeecccCCCCc
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATD--DKVTVESAEATLKYNVAIKCATITPDE 82 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~-------~~~i~~~~~~~G~~~~~~~g--~~lp~~~~dai~~~~v~lkg~~~tp~~ 82 (414)
|++|||||||||||+++++||.+. +++|+|+++++|+++|+++| +++|++++++|+++|++||||++||..
T Consensus 29 I~vipGDGIGpEv~~~a~~vl~a~~~~~~~~~~~i~~~~~~~G~~~~~~~G~~~~lp~~tl~~~~~~da~l~Ga~~tp~~ 108 (416)
T TIGR00183 29 IPYIEGDGIGVDVTPAAIKVLDAAVEKAYKGEKKIVWFEVYAGEKAYQLYGQDQWLPADTLDAIKEYRVAIKGPLTTPVG 108 (416)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCceEEEEEecCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999988522 15999999999999999999 999999999999999999999999953
Q ss_pred hhHHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCCcce-eeee
Q 015002 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLK-LVFV 159 (414)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~-~~~~ 159 (414)
. +++|+|+.||+.||||+|+||+++ ++++ |++...++|||||||||||+|+|.++...+++..+ +.|.
T Consensus 109 ~---------~~~s~~l~LR~~ldLyaNvRP~k~~pgl~s~~~~~~~vDivIvREnteG~Y~g~~~~~~~~~~~~~~~~~ 179 (416)
T TIGR00183 109 G---------GIRSLNVALRQELDLYVCLRPVRYYKGVPSPVKHPEKVDMVIFRENTEDIYAGIEWAEGSEEAKKLIRFL 179 (416)
T ss_pred c---------cccCcHHHHHHHcCCEEEEeEeecCCCCCCcCCCCCCCCEEEEEeCCCCcccccccccCcccceeeeccc
Confidence 2 568899999999999999999976 5665 33322389999999999999999986543222211 1122
Q ss_pred cCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCC-CCEEEEeCCCcccccchHHHHHHHHHHHhhc
Q 015002 160 PEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK-WPLYLSTKNTILKKYDGRFKDIFQEVYEANW 237 (414)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~-~~Vt~v~KaNvl~~tdglf~~~~~eva~~~y 237 (414)
+... +....++. .+++++ ++|||++++||+|+||+||++|+ ++||+|||+|||+.|||+|++|+.||++++|
T Consensus 180 ~~~~----g~~~~~~~--~~~a~~~~~~tr~~~~Riar~AFe~A~~r~rk~Vt~v~KaNvlk~tdglf~e~~~eva~~ey 253 (416)
T TIGR00183 180 QNEL----GVKKIRFP--EDSGIGIKPISEEGTKRLVRAAIEYAIENDRKSVTLVHKGNIMKFTEGAFRDWGYELAKKEF 253 (416)
T ss_pred cccc----Cccccccc--cccEEEEEEecHHHHHHHHHHHHHHHHhcCCCeEEEEECCCccccchhhHHHHHHHHHHHHH
Confidence 1100 00000011 356777 99999999999999999999995 4799999999999999999999999975468
Q ss_pred CCcccc-------------CCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCc
Q 015002 238 KSKFEA-------------AGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGK 303 (414)
Q Consensus 238 p~~~~~-------------~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~ 303 (414)
|.+|.. .+|+++|++||+||||||++|++| ||||+|||||||||++|+++|||||+||+|+|++
T Consensus 254 ~~~~~~~~lw~~~~~p~~~p~I~~~~~~vDa~~~~lv~~P~~fDVivt~NlfGDILSDlaa~l~GslGlapSanig~~-- 331 (416)
T TIGR00183 254 GAECITWGLWDKYKNPNPGKEIVIKDRIADAFLQQILTRPDEYDVIATMNLNGDYISDALAAQVGGIGIAPGANIGDE-- 331 (416)
T ss_pred hHhhhhccccccccCcccCCceeEeehhHHHHHHHHhhCcccCcEEEEcCcccchhhHHHHHhcCchhhcceeeeCCC--
Confidence 332221 189999999999999999999999 9999999999999999999999999999999977
Q ss_pred eEEEccccCcccccccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhcc
Q 015002 304 TIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIH 383 (414)
Q Consensus 304 ~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~ 383 (414)
++||||+||||| ||||||+ |||+|+|||++|||+|||+ .++|++|++||.+++++|++|+||+..+.
T Consensus 332 ~alFEp~HGSAP-----diAGk~i-ANP~a~IlS~amML~~lg~-------~~~A~~Ie~AV~~~l~~G~~T~Dl~~~~g 398 (416)
T TIGR00183 332 IGIFEATHGTAP-----KYAGQDK-VNPGSIILSGEMMLEHMGW-------KEAADLIKKAMEKAIASKIVTYDFARLMD 398 (416)
T ss_pred ceEEECCCCCch-----hhcCCCC-CCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcccccccccC
Confidence 599999999999 9999999 9999999999999999986 78999999999999999999999941110
Q ss_pred CCcCCcccccCHHHHHHHHHHHH
Q 015002 384 GSKMTREHYLNTEEFIDAVADDL 406 (414)
Q Consensus 384 G~~~~~~~~~sT~e~~daV~~~l 406 (414)
|. +.++|+||+|+|+++|
T Consensus 399 g~-----~~~~T~e~~daI~~~l 416 (416)
T TIGR00183 399 GA-----KEVKCSEFAEAIIENM 416 (416)
T ss_pred CC-----cccCHHHHHHHHHhhC
Confidence 31 1489999999999875
No 23
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=100.00 E-value=5.6e-100 Score=756.12 Aligned_cols=319 Identities=23% Similarity=0.236 Sum_probs=296.0
Q ss_pred EEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHHhh
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLK 91 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~l~ 91 (414)
|++|||||||||||+++++++.+.+++|+|+++++|.+++++||+++|++++++|+++|++||||+++|.+.
T Consensus 1 i~~ipGDGIGpEv~~~a~~vl~~~~~~i~~~~~~~G~~~~~~~G~~lp~~~l~~~~~~da~l~Gavg~p~~~-------- 72 (322)
T TIGR02088 1 VAVIPGDGIGPEVIEAAIRILNKLGLEIEFIEFEAGDEALKKYGSALPEDTLEEIRKADAILFGAVTTPANP-------- 72 (322)
T ss_pred CEEeCCCCccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHhCCCCCHHHHHHHHHCCEEEECcccCCCCC--------
Confidence 689999999999999999999877899999999999999999999999999999999999999999999642
Q ss_pred hcCCCcchhHhhhcCceEEeeeeec-cCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccchhh
Q 015002 92 QMWKSPNGTIRNILNGTVFREPIIC-KNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELE 170 (414)
Q Consensus 92 ~~~~s~~~~LRk~ldlyan~RPi~~-~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~~ 170 (414)
+++|+|++|||+||||+|+||+++ ++++...| .++|+|||||||||+|+|.++..
T Consensus 73 -~~~s~~~~LR~~ldlyanvRP~r~~~g~~~~~~-~~iD~vivREnteG~Y~g~~~~~---------------------- 128 (322)
T TIGR02088 73 -GYKSVIVTLRKELDLYANVRPAKSLPGIPDLYP-NGKDIVIVRENTEGLYAGFEFGF---------------------- 128 (322)
T ss_pred -CccChHHHHHHHcCCEEEEEEeeccCCCCCCCC-CCCCEEEEEeCcCCeeecccccc----------------------
Confidence 467889999999999999999976 45442221 27999999999999999975420
Q ss_pred hccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEe
Q 015002 171 VYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE 249 (414)
Q Consensus 171 ~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~ 249 (414)
.+++++ +++||+++|||+|+||+||++|++|||++||+|||+.|+|+|+++|+||+ ++|| |+++
T Consensus 129 -------~~~a~~~~~~tr~~~eRi~r~AF~~A~~r~~~Vt~v~KaNvl~~t~glf~~~~~eva-~~yp-------v~~~ 193 (322)
T TIGR02088 129 -------SDRAIAIRVITREGSERIARFAFNLAKERNRKVTCVHKANVLKGTDGLFREVCREIA-KRYG-------VEYR 193 (322)
T ss_pred -------CcceEEEEEecHHHHHHHHHHHHHHHHHcCCcEEEEeCCcchhhhHHHHHHHHHHHH-HhCC-------eeee
Confidence 235677 99999999999999999999998899999999999999999999999996 7898 9999
Q ss_pred eeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCc
Q 015002 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS 328 (414)
Q Consensus 250 ~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ 328 (414)
+++||++||+||++|++| ||||+|||||||||++|+++||+||+||+|+|++ ++||||.||||| ||||||+
T Consensus 194 ~~~vDa~~~~lv~~P~~fdViv~~NlfGDIlSDlaa~l~GglGl~pSanig~~--~a~fep~hGsa~-----diaG~~~- 265 (322)
T TIGR02088 194 DMYVDSAAMNLVKDPWRFDVIVTTNMFGDILSDLASALAGSLGLAPSANIGDR--KALFEPVHGSAP-----DIAGKGI- 265 (322)
T ss_pred eeeHHHHHHHHhhCCcCceEEEecCcccchhhHHHHhhcCCCCCCceeEEcCC--ceEEecCCCChh-----HhCCCCC-
Confidence 999999999999999999 9999999999999999999999999999999987 599999999999 9999999
Q ss_pred cChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHHHH
Q 015002 329 TNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVA 403 (414)
Q Consensus 329 ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~ 403 (414)
|||+|||+|++|||+|+|+ .++|++|++||.+++++|++|+||| | .+||+||+|+|+
T Consensus 266 aNp~a~i~A~~~~l~~~g~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----G-------~~~T~e~~~av~ 322 (322)
T TIGR02088 266 ANPTAAILSVAMMLDYLGE-------LEKGKLVWEAVEYYIIEGKKTPDLG----G-------TAKTKEVGDEIA 322 (322)
T ss_pred CChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCCCcccC----C-------CcCHHHHHHHhC
Confidence 9999999999999999886 7899999999999999999999998 7 799999999985
No 24
>PRK07362 isocitrate dehydrogenase; Validated
Probab=100.00 E-value=5.3e-100 Score=773.97 Aligned_cols=360 Identities=19% Similarity=0.186 Sum_probs=299.5
Q ss_pred EEEECCCCchHHHHHHHHHHHhcC-------CCceEEEEEecCchhhhhcCC--CCCHHHHHHHHcCCeeeecccCCCCc
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFP-------FLELDIKYFDLGLPNRDATDD--KVTVESAEATLKYNVAIKCATITPDE 82 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~-------~~~i~~~~~~~G~~~~~~~g~--~lp~~~~dai~~~~v~lkg~~~tp~~ 82 (414)
|++|||||||||||+++++||.+. +++|+|.++++|+++++++|+ +||++++++|+++|++||||++||.+
T Consensus 31 I~vIpGDGIGpEI~~aa~kVL~a~~~~~~~~~~~i~~~~~~~G~~a~~~~G~~~~lP~etle~i~~~da~L~Gpi~tP~~ 110 (474)
T PRK07362 31 IPFIRGDGTGVDIWPATQKVLDAAVAKAYGGERKINWFKVYAGDEACDLYGTYQYLPEDTLEAIREYGVAIKGPLTTPIG 110 (474)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHHHhccCCCCCeEEEEEccCHHHHHHhCCCCCCCHHHHHHHHHCCEEEECcccCCCC
Confidence 999999999999999999988532 258999999999999999996 89999999999999999999999954
Q ss_pred hhHHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCCC-CCCCCCCCCEEEEeeccCCccccccccccCCCccee----
Q 015002 83 ARVKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNVP-RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKL---- 156 (414)
Q Consensus 83 ~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~~-~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~---- 156 (414)
. +++|+|++|||.||||+|+||+++ +++| |++...++|+|||||||||+|+|+++....+...++
T Consensus 111 ~---------g~~s~~l~LRk~ldLyaNvRPvr~~pgl~sp~k~~~~iD~vIvRENTEGlY~G~~~~~~~~~~~~~~~~~ 181 (474)
T PRK07362 111 G---------GIRSLNVALRQIFDLYSCVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYMGIEWEAGDEIGDKLIKHL 181 (474)
T ss_pred c---------CccchHHHHHHHcCCceeeeEeeccCCCCCcccCCCCCCEEEEEECCCceecccccccccccchhccccc
Confidence 2 467889999999999999999987 4665 444334799999999999999998764211100011
Q ss_pred --eeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCC---CCEEEEeCCCcccccchHHHHHHH
Q 015002 157 --VFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK---WPLYLSTKNTILKKYDGRFKDIFQ 230 (414)
Q Consensus 157 --~~~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~---~~Vt~v~KaNvl~~tdglf~~~~~ 230 (414)
.+.+...+ +...+ . ..+++++ ++|||++++||+|+||+||++|+ ++||+|||+|||++|+|+|++|+.
T Consensus 182 ~~~~~~~~~~----~~~~~-~-~~~~a~~~k~iTr~g~eRI~r~AFe~A~~r~~~rkkVT~VhKaNVlk~t~glf~~~~~ 255 (474)
T PRK07362 182 NEEVIPASPE----LGKRQ-I-PLGSGIGIKPVSKTGSQRHIRRAIEHALRLPGDKRHVTLVHKGNIMKYTEGAFRDWGY 255 (474)
T ss_pred cccccccccc----ccccc-c-ccceeeeeeeccHHHHHHHHHHHHHHHHhcCCCCCeEEEEECCcccccchhHHHHHHH
Confidence 11111000 00000 0 1456788 99999999999999999999983 579999999999999999999988
Q ss_pred HHHHhhc-------------------CCc------------c------------------------------ccCCeEEe
Q 015002 231 EVYEANW-------------------KSK------------F------------------------------EAAGIWYE 249 (414)
Q Consensus 231 eva~~~y-------------------p~~------------~------------------------------~~~~I~~~ 249 (414)
|||.++| |+. | ...+|.++
T Consensus 256 evA~~~~~~~~v~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 335 (474)
T PRK07362 256 ELATTEFRDECVTERESWILSNKEKNPNISIEDNARMIEPGYDSLTPEKKAAICAEVKEVLDSIWSSHGNGKWKEKVLVD 335 (474)
T ss_pred HHHHHhhhhhhhhhhhhhhhcccccCccccccccccccccccccccccccccccccccccccchhhccccccCCCcceee
Confidence 9974344 420 0 00258999
Q ss_pred eeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCc
Q 015002 250 HRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETS 328 (414)
Q Consensus 250 ~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ 328 (414)
+++||++|||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ .+||||+||||| ||||||+
T Consensus 336 ~~~vDa~a~~lv~~P~~FDVIVt~NLfGDILSDlaA~lvGglGlaPSANiG~~--~a~FEpvHGSAP-----dIAGk~i- 407 (474)
T PRK07362 336 DRIADSIFQQIQTRPQEYSILATLNLNGDYISDAAAAIVGGLGMAPGANIGDN--AAIFEATHGTAP-----KHAGLDR- 407 (474)
T ss_pred hHHHHHHHHHHHhChhhCCEEEEccccchhhhHHHHHhcCCccccceeeeCCC--ceeeecCCCCch-----hhcCCCC-
Confidence 999999999999999999 9999999999999999999999999999999987 599999999999 9999999
Q ss_pred cChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHHHHHH
Q 015002 329 TNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADD 405 (414)
Q Consensus 329 ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~~ 405 (414)
|||+|||||++|||+|||+ .++|++|++||.+++++|.+|+|||+.+.. ....+||+||+++|+++
T Consensus 408 ANP~A~ILS~aMML~~LG~-------~~~A~~I~~AV~~vl~~g~~T~Dlg~~~~~----~~~~~sT~E~~~aIi~~ 473 (474)
T PRK07362 408 INPGSVILSGVMMLEYLGW-------QEAADLITKGLSAAIANKQVTYDLARLMEP----PVDPLSCSEFAEAIISH 473 (474)
T ss_pred cCcHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHcCCcccCCCCcccc----CCCCcCHHHHHHHHHhc
Confidence 9999999999999999996 799999999999999999999999721100 00258999999999986
No 25
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5e-100 Score=732.74 Aligned_cols=325 Identities=24% Similarity=0.300 Sum_probs=303.1
Q ss_pred ccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHH
Q 015002 10 NPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFV 89 (414)
Q Consensus 10 ~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~ 89 (414)
+++++||||||||||++++++++.++.++|+|+.+|.+...--.++..+|+++++++++.+++||||+.||-++
T Consensus 36 ~~vtLIpGDGIGpEi~~av~kvf~aak~pIewd~~dv~~~~~~~~~~~ip~~~~esl~~nkvgLkGp~~tPi~k------ 109 (365)
T KOG0785|consen 36 ITVTLIPGDGIGPEISPAVKKVFEAAKVPIEWDFIDVTPIKGPFGGKAIPDEAVESLRKNKVGLKGPVATPIGK------ 109 (365)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHhcCCCcceeeeeccccccCCCCccCCHHHHHHHHhhcccccCcccCcccc------
Confidence 68899999999999999999999989999999999987754444778999999999999999999999999764
Q ss_pred hhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCC-CCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccch
Q 015002 90 LKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTE 168 (414)
Q Consensus 90 l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~-~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~ 168 (414)
+-+|+|++|||+|+||||+||+ +++++++.++ ++|+|++||||||+|+|+||...
T Consensus 110 ---gh~S~nl~LRK~f~LyANVRPc--~SieG~Kt~Y~~vD~V~IRENTEgeYsgiEh~vv------------------- 165 (365)
T KOG0785|consen 110 ---GHRSLNLALRKEFGLYANVRPC--KSIEGYKTPYDDVDLVIIRENTEGEYSGIEHQVV------------------- 165 (365)
T ss_pred ---ccccHHHHHHHHhchhccceec--ccccCCcCCCCCceEEEEecCCccccccceeecc-------------------
Confidence 5679999999999999999995 6688888877 79999999999999999998431
Q ss_pred hhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCe
Q 015002 169 LEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGI 246 (414)
Q Consensus 169 ~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I 246 (414)
++|+.+ +.||+.+++||++|||+||++++| +||++||+|||+.|||||+++|+|++ ++|| +|
T Consensus 166 ---------pGVvqsiK~IT~~AS~Ria~~AF~yAr~~~R~~vtvvHKaNImr~tDGLFle~cre~a-~~y~------dI 229 (365)
T KOG0785|consen 166 ---------PGVVQSIKLITEAASRRIAEYAFEYARQNGRKRVTVVHKANIMRMTDGLFLECCREVA-KKYP------DI 229 (365)
T ss_pred ---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEehhhhhhhcchHHHHHHHHHh-hhCC------cc
Confidence 457777 999999999999999999999976 69999999999999999999999995 7899 99
Q ss_pred EEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCC
Q 015002 247 WYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGG 325 (414)
Q Consensus 247 ~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk 325 (414)
.++++++|++|++|+++|..| |+|+||||||||||++|+|+||||+.||+|+| ++ .++||++||||| |||||
T Consensus 230 ~~eE~~lDt~~l~lv~~P~~~DVlV~PNLYGDIlSD~~agLvGgLGltPS~NiG-~g-~~~~e~vHGsAP-----DIAGk 302 (365)
T KOG0785|consen 230 KFEEQYLDTCCLKLVRNPSCFDVLVMPNLYGDILSDLCAGLVGGLGLTPSANIG-DG-IVIFEAVHGSAP-----DIAGK 302 (365)
T ss_pred chhHHHHHHHHHHHhcCchhceEEeccchhHHHHHHHHHHhccCcccCCCcccC-CC-eeeeecccCCCc-----ccccC
Confidence 999999999999999999999 99999999999999999999999999999999 55 799999999999 99999
Q ss_pred CCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHHHHHH
Q 015002 326 ETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDAVAD 404 (414)
Q Consensus 326 ~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~daV~~ 404 (414)
++ |||+|++||++|||+|+| +.+.|+.|+.||.+++++| ++|+||| | .++|+||+++|++
T Consensus 303 dl-ANPtAlllS~vmMLrhm~-------l~~~A~~I~~Av~~ti~eg~~rT~DLG----G-------ka~~seft~aVc~ 363 (365)
T KOG0785|consen 303 DL-ANPTALLLSAVMMLRHMG-------LNDQADQIESAVFKTIAEGKIRTPDLG----G-------KATTSEFTDAVCD 363 (365)
T ss_pred Cc-CCcHHHHHHHHHHHHHcC-------chhHHHHHHHHHHHHHhccCccCcccC----C-------CccchHHHHHHHh
Confidence 99 999999999999999998 3799999999999999999 8999998 7 7999999999998
Q ss_pred HH
Q 015002 405 DL 406 (414)
Q Consensus 405 ~l 406 (414)
+|
T Consensus 364 ~l 365 (365)
T KOG0785|consen 364 RL 365 (365)
T ss_pred cC
Confidence 75
No 26
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=100.00 E-value=6.6e-97 Score=744.68 Aligned_cols=332 Identities=28% Similarity=0.305 Sum_probs=291.7
Q ss_pred cEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHH
Q 015002 11 PIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVK 86 (414)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~ 86 (414)
+|++|||||||||||+++++++.+. +++|+|+++++|.+++++||+++|++++++|+++|++||||+++|...
T Consensus 1 kI~vipGDGIGpEv~~~~~~Vl~a~~~~~~~~~e~~~~~~G~~~~~~~g~~lp~et~~~i~~~daiL~Gai~~p~~~--- 77 (348)
T PF00180_consen 1 KIAVIPGDGIGPEVMPAALRVLEAAAEKYGLDFEFEEFDIGGEAYDKTGEPLPDETLEAIKRADAILKGAIGTPKPP--- 77 (348)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHHHTEEEEEEEEETSHHHHHHHSSSSHHHHHHHHHHCSEEEEEE--CGGSS---
T ss_pred CcceeccCcchHHHHHHHHHHHHHHHhhcccccccccccchhhhhhhccccccHHHHHHHhhcCcEEEccccccccc---
Confidence 6899999999999999999987654 589999999999999999999999999999999999999999999732
Q ss_pred HHHhhhcCCC--cchhHhhhcCceEEeeeeecc---CCC-CCCC--CCCCCEEEEeeccCCccccccccccCCCcceeee
Q 015002 87 EFVLKQMWKS--PNGTIRNILNGTVFREPIICK---NVP-RLIP--GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (414)
Q Consensus 87 e~~l~~~~~s--~~~~LRk~ldlyan~RPi~~~---~~~-~l~~--~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~ 158 (414)
..++ ++++||+.||||+|+||+++. +.+ |+++ ..++||+||||||||+|+|.++....
T Consensus 78 ------~~~~~~~l~~lR~~ldl~anvRp~~~~~~~~~~~~~~~~~~~~iDivivREnteG~Y~g~~~~~~~-------- 143 (348)
T PF00180_consen 78 ------GIRSENGLLKLRKELDLYANVRPVRSFPGPGVPSPLKDEIPEGIDIVIVRENTEGLYSGIEHEIGD-------- 143 (348)
T ss_dssp ------SHSHHHHHHHHHHHTTHHEEEEEEEEECETTGGSSBSHHHHTTSEEEEEEESSSGGGGEEEEEECS--------
T ss_pred ------ccccHHHHHHHHHhcccceeeEEEEEeccccccccccccccCcceEEEecccccCcccCCCCceee--------
Confidence 1122 347999999999999999873 222 3332 12599999999999999999875421
Q ss_pred ecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchHHHHHHHHHHHhh
Q 015002 159 VPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEAN 236 (414)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~ 236 (414)
+ ++ +++++++ ++|||+++|||+|+||++|++| +++||+|||+|||+.++ +|+++|+||++++
T Consensus 144 ----~----------~~-~~~~a~~~~~~t~~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~~~~-lf~~~~~eva~~~ 207 (348)
T PF00180_consen 144 ----G----------GT-PDEVAIDTKVITREGIERIARFAFEYARKRGRKKVTVVHKANVLKSTD-LFREVFQEVAKQE 207 (348)
T ss_dssp ----E----------EE-GSSEEEEEEEEEHHHHHHHHHHHHHHHHHTTTSEEEEEESTTTSTTHH-HHHHHHHHHHHHT
T ss_pred ----c----------cC-CCceEEEeeccccchhhHHHHHHHHHHHHhCCceEEEEeccchhHHHH-HHHHHHHHHHHhh
Confidence 0 01 1568888 9999999999999999999999 66899999999999888 9999999997449
Q ss_pred cCCccccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccc
Q 015002 237 WKSKFEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVT 315 (414)
Q Consensus 237 yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP 315 (414)
|| +|++++++||+++|+||++|++| ||||+|||||||||++|+++||+|++||+|+|++. ++||||+|||||
T Consensus 208 yp------~I~~~~~~vD~~~~~Lv~~P~~fdViv~~Nl~GDIlSDl~a~l~G~lGl~psanig~~~-~a~fEp~HGSAp 280 (348)
T PF00180_consen 208 YP------DIEVEHMLVDAAAMQLVKNPEQFDVIVTPNLFGDILSDLAAGLVGGLGLAPSANIGPDG-HAMFEPVHGSAP 280 (348)
T ss_dssp HT------TSEEEEEEHHHHHHHHHHSGGGESEEEEEHHHHHHHHHHHHHHHTSGGGEEEEEEETSS-EEEEEESSTTTG
T ss_pred cc------eeEeeeeechhhhheeecCCcceeEEeecchhHHHHHHHhhhcCCChhhhhhhccCccc-cccccccccccc
Confidence 99 99999999999999999999999 99999999999999999999999999999999644 799999999999
Q ss_pred ccccccccCCCCccChhHHHHHHHHHHHH-hccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccC
Q 015002 316 RHYRVHQKGGETSTNSIASIFAWSRGLAH-RAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLN 394 (414)
Q Consensus 316 ~~~~~dIaGk~i~ANP~a~IlS~ammL~~-lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~s 394 (414)
||||||+ |||+|||||++|||+| +|+ ++.|++|++||.+++++|++|+||| |.- .+.++
T Consensus 281 -----diaGk~~-aNP~a~Ils~a~mL~~~lg~-------~~~a~~i~~Av~~~l~~g~~T~Dlg----g~~---~~~~~ 340 (348)
T PF00180_consen 281 -----DIAGKGI-ANPIAMILSAAMMLEHSLGL-------PEAADAIEKAVEKVLEEGIRTPDLG----GSA---TTAVS 340 (348)
T ss_dssp -----GGTTSSH-S-THHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHHHHHTTEEBGGGH----TTT---CEEBH
T ss_pred -----cccCCcc-cCcHHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHHHHcCCCCcccc----CCC---CCCCC
Confidence 9999999 9999999999999999 885 8999999999999999999999998 520 13459
Q ss_pred HHHHHHHH
Q 015002 395 TEEFIDAV 402 (414)
Q Consensus 395 T~e~~daV 402 (414)
|+||+|+|
T Consensus 341 T~e~~daV 348 (348)
T PF00180_consen 341 TEEFGDAV 348 (348)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99999997
No 27
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=100.00 E-value=2e-93 Score=715.35 Aligned_cols=380 Identities=34% Similarity=0.473 Sum_probs=349.4
Q ss_pred EEEECCCCchHHHHHHHHHHHhcCCCceE-EEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHHHh
Q 015002 12 IVEMDGDEMTRVFWKSIKDKLIFPFLELD-IKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVL 90 (414)
Q Consensus 12 I~vi~GDGIGpEv~~~~~~v~~~~~~~i~-~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~~l 90 (414)
+|.+.||+|.+.+|+.+++.|+.++++++ |+|||+|.+++++|.+++.-|+++|+++++|++|||+.||+..+++|++|
T Consensus 1 ~v~~~gdemtr~~~~~i~~~li~p~~d~~~~~y~DL~~~~Rd~T~dqvt~daa~a~~~~~vgvKcatiTp~~~rv~e~~l 80 (393)
T PLN00096 1 MVYVAGEEMTRYTMDLILAKWIEPHVDTSAWEFFDLRAKNRDDTEDQVLRDVIEAGARLKAIFKEPTITPTADQVKRLGL 80 (393)
T ss_pred CeeecchHHHHHHHHHHHHhhccceeccccceeeccCCccccccCCcchHHHHHHHHHhCeeeeecccCCCHHHHHhhch
Confidence 37899999999999999999999999995 99999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchhHhhhcCc-eEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccchh
Q 015002 91 KQMWKSPNGTIRNILNG-TVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTEL 169 (414)
Q Consensus 91 ~~~~~s~~~~LRk~ldl-yan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~~~ 169 (414)
++.|+|||.+||+.||. .+++.||.++++| |+|..+|+|.|+..+|.|.. ++...+||.+++.|.|++|+++.++
T Consensus 81 k~~w~sPNgtiR~~l~G~tvfR~pi~~~~i~---~~w~kpi~i~Rha~gd~y~a-~~~~~~~g~~~~~~~~~~g~~~~~~ 156 (393)
T PLN00096 81 KKAWGSPNGAMRRGWNGITISRDTIHIDGVE---LGYKKPVFFERHAVGGEYSA-GYKIVGKGTLVTTFVPEEGGKPIVV 156 (393)
T ss_pred hhhcCCCcHHHHhhcCCceEeeCCEecCCCC---CCccCceEEEeeccCCcccc-ceEecCCcEEEEEEEeCCCCCceEE
Confidence 99999999999999999 9999999998885 88999999999999999999 8988999999999999998778888
Q ss_pred hhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcccc-----C
Q 015002 170 EVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEA-----A 244 (414)
Q Consensus 170 ~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~-----~ 244 (414)
++++|++..+++..+++|.+.++||||+||+||++|+++||+|||+||||+++|+|+ +|+||++++|+++|++ .
T Consensus 157 ~~~~f~~~~gv~~~~~N~~~si~RiAr~AF~~A~~r~~~Vt~v~KaNILK~tdg~f~-if~eVa~~eyk~~f~~~~~~~p 235 (393)
T PLN00096 157 DDRTITDDLNAVVTYHNPLDNVHHLARIFFGRCLDAGIVPYVVTKKTVFKWQEPFWE-IMKKVFDEEFKSKFVDKGVMKS 235 (393)
T ss_pred EEEecCCCCeEEEEeccCHHHHHHHHHHHHHHHHHhCCcEEEEeCccccccchHHHH-HHHHHHHHHHhhhhhhcccCCC
Confidence 999998547888889999999999999999999999999999999999999999998 9999986799877776 4
Q ss_pred CeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCC--Cc-eEEEccccCcccccccc
Q 015002 245 GIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD--GK-TIEAEAAHGTVTRHYRV 320 (414)
Q Consensus 245 ~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~--~~-~a~FEp~HGSAP~~~~~ 320 (414)
+|+++|++||+|+||||++|++| ||||+|||||||||++|+++|||||+||+|+|++ +. ++||||+|||||+++++
T Consensus 236 ~V~~e~~lIDa~~~qlVk~P~~fdViv~~NlfGDIlSDlaA~l~GsLGl~pSanig~d~dg~~~a~fEp~HGSApdiag~ 315 (393)
T PLN00096 236 GDELVHLLSDAATMKLVVWTDGGFGMAAHNYDGDVLTDELAQVHKSPGFITSNLVGVDENGTLIKEFEASHGTVTDMDEA 315 (393)
T ss_pred ceEEEeeeHHHHHHHHHhCcccCCEEEECcccchHHHHHHHHhcCCcccccccccCCccCCccceEEEcCCCChHHhhhh
Confidence 67899999999999999999999 9999999999999999999999999999999954 52 38999999999955555
Q ss_pred cccCCC-CccChhHHHHHHHHHHHHhccccCch-hhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHH
Q 015002 321 HQKGGE-TSTNSIASIFAWSRGLAHRAKLDNNA-RLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEF 398 (414)
Q Consensus 321 dIaGk~-i~ANP~a~IlS~ammL~~lG~~~~~~-~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~ 398 (414)
++.||+ + |||+|+|||++|||+|+++++++. .+.++|++|++||.+|+++|++|+||+ |. ..++|+||
T Consensus 316 ~~~Gk~~~-ANPiA~IlA~a~mL~~~~~l~g~~~~l~~~A~~Ie~Av~~tie~G~~T~DL~----g~-----~~~tT~ef 385 (393)
T PLN00096 316 RLRGEETS-LNPLGMVEGLIGAMNHAADVHGGKERVHPFTAKLRAVIHKLFREGRGTRDLC----GA-----GGLTTEQF 385 (393)
T ss_pred hhcCCCCc-cChHHHHHHHHHHHHhhcccCCCchhhHHHHHHHHHHHHHHHhcCCcCcCCC----CC-----CCCCHHHH
Confidence 555995 8 999999999999999997654432 568899999999999999999999996 30 15899999
Q ss_pred HHHHHHHH
Q 015002 399 IDAVADDL 406 (414)
Q Consensus 399 ~daV~~~l 406 (414)
+|+|+++|
T Consensus 386 ~daI~~~L 393 (393)
T PLN00096 386 IDAVAEEL 393 (393)
T ss_pred HHHHHHhC
Confidence 99999875
No 28
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=4.1e-91 Score=688.41 Aligned_cols=365 Identities=36% Similarity=0.487 Sum_probs=327.4
Q ss_pred cEEEECCCCchHHHHHHHHHHHh----cCC---CceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCch
Q 015002 11 PIVEMDGDEMTRVFWKSIKDKLI----FPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEA 83 (414)
Q Consensus 11 ~I~vi~GDGIGpEv~~~~~~v~~----~~~---~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~ 83 (414)
-|-+|.|||||+|+++++.+++. .++ .+|+|.++++|.+++++||++||+||+++|+++.|++|||++||.+.
T Consensus 20 iiP~IegDgiG~eit~~~~kvi~aav~k~Y~g~~~I~w~e~~aG~ka~d~tg~~lp~etl~aikky~VaIKgpl~TPvg~ 99 (407)
T COG0538 20 IIPFIEGDGIGDEITRAIWKVIDAAVEKAYGGERKIEWKEVDAGEKARDKTGDQLPIETLEAIKKYGVAIKGPLTTPVGK 99 (407)
T ss_pred ccceEecCCCcHHHHHHHHHHHHHHHHhhcCCcceeEEEEEecchHHHHhhcCcCCHHHHHHHHHhCEEeeccccCcccc
Confidence 45699999999999999998764 345 89999999999999999999999999999999999999999999753
Q ss_pred hHHHHHhhhcCCCcchhHhhhcCceEEeeeeecc-CCCCCCC-CCCCCEEEEeeccCCccccccccccCCCcceeeeecC
Q 015002 84 RVKEFVLKQMWKSPNGTIRNILNGTVFREPIICK-NVPRLIP-GWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE 161 (414)
Q Consensus 84 ~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~-~~~~l~~-~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~ 161 (414)
+|+|||++||+.||||+|+|||++. ++|++.+ +|.+||||+||||||.|.|+||...+++..++.++.+
T Consensus 100 ---------g~rSlNvtlRq~Ldly~~~rPv~y~~gvPspvk~pe~~dmVIfRenteDiYagiE~~~~s~~a~kl~~fl~ 170 (407)
T COG0538 100 ---------GWRSLNVTLRQILDLYVFRRPVRYFPGVPSPVKRPEKVDMVIFRENTEDIYAGIEWKAGSPEALKLIFFLE 170 (407)
T ss_pred ---------cccCchHHHHHHcCceEeeeeEEecCCCCCCCCCcccCCeEEEeccccchhheeeeccCCcchhhhhhhhh
Confidence 8999999999999999999999995 9995544 4899999999999999999999999999999887755
Q ss_pred CCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHh-hc--
Q 015002 162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEA-NW-- 237 (414)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~-~y-- 237 (414)
++ .++.+.+|+.+.++++ +.+|+++++|++|.||+||.+++| .||++||.||||+|+|.|++|++|||.+ +|
T Consensus 171 ~e---~~~~~i~~pe~~GIgi-kp~s~~~s~Rlvr~ai~yAi~~~r~~VtlvhKgnImK~teGaFkdw~yeva~~~ef~~ 246 (407)
T COG0538 171 DE---MGVKKIRFPEDSGIGI-KPISKEGSIRLVRAAIEYAIENKRKSVTLVHKGNIMKFTEGAFKDWGYEVAEEEEFGD 246 (407)
T ss_pred cc---cccceEecCCCCceEE-EecCchhhHHHHHHHHHHHHHcCCceEEEEecCeeeecccchHHHHHHHHHhhhcccc
Confidence 33 2345556664456666 888999999999999999999985 6999999999999999999999999876 34
Q ss_pred -----CCccccCC----eEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEE
Q 015002 238 -----KSKFEAAG----IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEA 307 (414)
Q Consensus 238 -----p~~~~~~~----I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~F 307 (414)
..+++..+ |.++|+++|+|.+|++++|+.| ||+|.||.||++||.+|+++|||||+||+|+| ++ +++|
T Consensus 247 ~~~~~~~~~~~~~~~gkI~~~driaD~mlqQil~r~~eydViA~~NlnGDy~SDa~Aa~vGglGi~pgani~-~~-~~~f 324 (407)
T COG0538 247 EVVTGKEKFELKGPKGKIVYKDRIADDMLQQILLRPGEYDVIATKNLNGDYISDALAAQVGGLGLAPGANIG-DG-TAEF 324 (407)
T ss_pred cccccchhhhccCcCceEEEehhhHHHHHHHHhcCCCCceEEEeccCCccHHHHHHHHhcCCccccccceec-Cc-eEEE
Confidence 44566666 9999999999999999999999 99999999999999999999999999999999 44 7999
Q ss_pred ccccCcccccccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcC
Q 015002 308 EAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM 387 (414)
Q Consensus 308 Ep~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~ 387 (414)
||+|||||+ .+||+. +||+|.|||+.|||+|+|| .++|+.|+.||..|+++|++|+||+.++.|.
T Consensus 325 EA~HGTapk-----~aG~~~-~Np~a~Ils~~~ml~~~Gw-------~eaa~li~~a~~~ti~~~~vT~DlArl~~~~-- 389 (407)
T COG0538 325 EATHGTAPK-----YAGKDS-TNPIASILSGTMMLRHRGW-------LEAADLIEKAVEDTIESGKVTYDLARLMGGA-- 389 (407)
T ss_pred EeccCcccc-----ccCcCC-CCcHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHhCceeHHHHHhhCCC--
Confidence 999999994 559988 9999999999999999998 5799999999999999999999999877542
Q ss_pred CcccccCHHHHHHHHHHHHH
Q 015002 388 TREHYLNTEEFIDAVADDLR 407 (414)
Q Consensus 388 ~~~~~~sT~e~~daV~~~l~ 407 (414)
.+.++|+||+|+|+++|+
T Consensus 390 --~~~v~tsEF~d~ii~~l~ 407 (407)
T COG0538 390 --KRYLSTSEFADAIIENLK 407 (407)
T ss_pred --ccceeHHHHHHHHHHhcC
Confidence 137999999999999873
No 29
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-84 Score=628.74 Aligned_cols=325 Identities=22% Similarity=0.245 Sum_probs=297.6
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchhHHHH
Q 015002 9 ANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEF 88 (414)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~~~e~ 88 (414)
.+++++|||||||||++.++.+++.+.++|++|+++++++ -.+.++..+++++++|++.+|+|||-+.||...
T Consensus 42 ~~tVTlipGdGIGpe~~~~V~~v~~a~~~PV~fE~i~v~~--~~~~~~~~~~e~v~Si~rNkValkG~i~t~~~~----- 114 (375)
T KOG0784|consen 42 RHTVTLIPGDGIGPELTNAVREVFSAAHAPVEFEEIEVSG--SNKESSEDLDEAVESIKRNKVALKGNIETPDLP----- 114 (375)
T ss_pred cceEEEeCCCCcCHHHHHHHHHHHHhcCCCeeEEEEEccC--CccccchhHHHHHHHHHhcceeEeecccCCCCc-----
Confidence 4889999999999999999999999999999999999987 223345578999999999999999999999422
Q ss_pred HhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCC-CCCEEEEeeccCCccccccccccCCCcceeeeecCCCCccc
Q 015002 89 VLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW-TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKT 167 (414)
Q Consensus 89 ~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~-~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~g~~~~ 167 (414)
++..|.|+.||++||||||+-- |+++|+++.+. ++||||+||||||+|+|.||...
T Consensus 115 ---g~~~s~n~~LR~~LDLyanvv~--~~slpG~~tRh~~vDiviIRENTEGEYs~LEHE~V------------------ 171 (375)
T KOG0784|consen 115 ---GGAKSLNVKLRKELDLYANVVH--CKSLPGVKTRHENVDIVIIRENTEGEYSGLEHESV------------------ 171 (375)
T ss_pred ---cchhhhHHHHHHhhhhhhheee--eeccCCcccccCCccEEEEecCCcccccccccccC------------------
Confidence 2567999999999999999954 67889888776 89999999999999999998532
Q ss_pred hhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCC
Q 015002 168 ELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKW-PLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAG 245 (414)
Q Consensus 168 ~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~-~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~ 245 (414)
++|..+ +++|++.+|||+||||+||.+.+| |||.|||||+||..||||+++|+||+ +.|| +
T Consensus 172 ----------pGVVEsLKVvT~~kseRIaryAF~yA~k~gRKkVTaVHKAnimKL~DGlFle~~~eva-~~Yp------~ 234 (375)
T KOG0784|consen 172 ----------PGVVESLKVVTRFKSERIARYAFEYAKKNGRKKVTAVHKANIMKLGDGLFLESCQEVA-KKYP------D 234 (375)
T ss_pred ----------cchhheeeeehhhhhHHHHHHHHHHHHHhCCceEEEEeccCceecchhhHHHHHHHHH-hcCC------C
Confidence 456667 999999999999999999999875 79999999999999999999999997 5699 9
Q ss_pred eEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEcc--ccCcccccccccc
Q 015002 246 IWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEA--AHGTVTRHYRVHQ 322 (414)
Q Consensus 246 I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp--~HGSAP~~~~~dI 322 (414)
|+++.++||++|||||.+|++| |+|+|||||.|+|.+||+|+||.|+.|++|+|++ +++||| .|++. ++
T Consensus 235 I~~e~miVDN~~MQlvs~P~qFDvmv~pnlYgniisNiaaGlvGG~Glv~G~n~G~~--yAVFE~g~r~~~~------~~ 306 (375)
T KOG0784|consen 235 ITFEEMIVDNACMQLVSRPQQFDVMVMPNLYGNIISNIAAGLVGGAGLVSGANYGDD--YAVFEPGARHTGT------SI 306 (375)
T ss_pred ccHHHhhHHHhHHHhhcCchheeeEechHHHHHHHHHHHHHhcCCCCcccccccccc--eEEecccccccch------hh
Confidence 9999999999999999999999 9999999999999999999999999999999988 799999 57774 69
Q ss_pred cCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC-CCccchhhhccCCcCCcccccCHHHHHHH
Q 015002 323 KGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG-KMTKDLALIIHGSKMTREHYLNTEEFIDA 401 (414)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G-~~T~Dlg~~~~G~~~~~~~~~sT~e~~da 401 (414)
+||++ |||+|||+|.+|||+||| ++..|++|+.||.+|+.+| ++|+||| | ..||++|+++
T Consensus 307 ~g~~~-aNPtA~llss~~MLrHL~-------l~~~Ad~i~~Av~~vi~egk~rT~DlG----G-------~~Tt~dvi~a 367 (375)
T KOG0784|consen 307 AGKNI-ANPTAMLLSSVDMLRHLG-------LPSHADRISTAVKRVIDEGKIRTKDLG----G-------QSTTQDVIDA 367 (375)
T ss_pred hcccc-cCcHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHhcCcccccccC----C-------CcchHHHHHH
Confidence 99999 999999999999999998 3899999999999999999 8999998 7 7999999999
Q ss_pred HHHHHH
Q 015002 402 VADDLR 407 (414)
Q Consensus 402 V~~~l~ 407 (414)
|+.+|+
T Consensus 368 vI~~l~ 373 (375)
T KOG0784|consen 368 VIANLR 373 (375)
T ss_pred HHHHhc
Confidence 999986
No 30
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-80 Score=582.96 Aligned_cols=339 Identities=21% Similarity=0.181 Sum_probs=299.5
Q ss_pred cccEEEECCCCchHHHHHHHHHHHhcC----CCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015002 9 ANPIVEMDGDEMTRVFWKSIKDKLIFP----FLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR 84 (414)
Q Consensus 9 ~~~I~vi~GDGIGpEv~~~~~~v~~~~----~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~ 84 (414)
.|+|+++|||||||||+..+.+||.+. +++|+|++..+|+.+.+.+|-|+|+|++++-+++|+.|.|+++.+.+..
T Consensus 4 ~~~i~llpgd~ig~ev~s~a~~vlq~~~~l~~vefdf~~~~iggaald~~gvplpeet~~aak~sdavllgaigg~kw~~ 83 (363)
T KOG0786|consen 4 RYNITLLPGDGIGPEVISVAKNVLQKAGSLEGVEFDFEEMPIGGAALDLVGVPLPEETLTAAKKSDAVLLGAIGGYKWDK 83 (363)
T ss_pred cceEEEcCCCCcCHHHHHHHHHHHHHhccccceeeccccCcccccchhccCCCCCHHHHhhhhhcceeEeecccCcccCc
Confidence 489999999999999999999998765 6899999999999999999999999999999999999999999887642
Q ss_pred HHHHHhhhcCCCcchhHhhhcCceEEeeeeec-cCC---CCCCCCC--CCCEEEEeeccCCccccccccccCCCcceeee
Q 015002 85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIIC-KNV---PRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVF 158 (414)
Q Consensus 85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~-~~~---~~l~~~~--~iDivivREnteg~Y~g~e~~~~~~g~~~~~~ 158 (414)
+..++... .+.||+.|.+|+|+||+.+ +.+ .++++.. ++|++||||.|+|+|+|....
T Consensus 84 ----~~lrpe~g-ll~ir~~lkvfanlrp~~~~~qlvd~s~lk~e~aeg~d~mvvrel~ggiyfge~r~----------- 147 (363)
T KOG0786|consen 84 ----NHLRPEMG-LLKIRRDLKVFANLRPATVLPQLVDASTLKKEVAEGVDMMVVRELTGGIYFGEPRN----------- 147 (363)
T ss_pred ----CCcChhhh-HHHHHHHHHHHhcCCcchhhHhhhccccccHHHhcCcceEEeeeecCceeecCccc-----------
Confidence 11112222 3689999999999999865 222 1555554 799999999999999996431
Q ss_pred ecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCC--CCEEEEeCCCcccccchHHHHHHHHHHHh
Q 015002 159 VPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKK--WPLYLSTKNTILKKYDGRFKDIFQEVYEA 235 (414)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~--~~Vt~v~KaNvl~~tdglf~~~~~eva~~ 235 (414)
++ + ++++++ .+|+-.++.||+|.||+.|++|+ .++|+++|+||+. ++.|||+.+.+..+.
T Consensus 148 --en-------------g-~gva~dte~Ya~~Ev~RIaR~Aa~~A~~~~pp~pl~slDKANVLa-aSrLWRKtV~~~~k~ 210 (363)
T KOG0786|consen 148 --EN-------------G-EGVAFDTEIYAAHEVDRIARVAAETARKRRPPGPLCSLDKANVLA-ASRLWRKTVTKALKS 210 (363)
T ss_pred --CC-------------C-cceeeccccccHHHHHHHHHHHHHHHHhhCCCCCccccchhhHHH-HHHHHHHHHHHHHHh
Confidence 12 2 678888 99999999999999999999998 5899999999997 899999999988788
Q ss_pred hcCCccccCCeEEeeeeHHHHHHHHhhCCCcc--EEEeCCcchhhHhhhhhhhcCCccccccceec-----CCCceEEEc
Q 015002 236 NWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY--VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVC-----PDGKTIEAE 308 (414)
Q Consensus 236 ~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~f--Viv~~NlfGDILSDlaa~l~GglGlapSanig-----~~~~~a~FE 308 (414)
||| ++++.|++||+++|+||++|.+| +|||.|+||||+||.++.+.||+||.||++++ +.+ +++||
T Consensus 211 EyP------~l~l~hqliDsAAM~Lvk~P~~lng~ivT~NiFGDIiSDEASvIpGSlGlLPSASLs~v~~~es~-~gL~E 283 (363)
T KOG0786|consen 211 EYP------DLELSHQLIDSAAMQLVKDPKQLNGTIVTNNIFGDIISDEASVIPGSLGLLPSASLSGVVSEESG-PGLFE 283 (363)
T ss_pred hCC------CcchhhhhhhHHHHHHhcCchhcCceEEeccchhhhhccccccccCccccccchhhcCCcccccC-Ccccc
Confidence 999 99999999999999999999999 99999999999999999999999999999998 444 79999
Q ss_pred cccCcccccccccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCC
Q 015002 309 AAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMT 388 (414)
Q Consensus 309 p~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~ 388 (414)
|+||||| ||+||++ +||+|+|||++|||.| .++ ++++|++|++||..++..|.+|.||| |
T Consensus 284 PiHGSAP-----Diagk~k-vNPlaTILSAamlLky--gLn----~pkeakaIEdAV~kvLd~G~rTgDlg----g---- 343 (363)
T KOG0786|consen 284 PIHGSAP-----DIAGKDK-VNPLATILSAAMLLKY--GLN----EPKEAKAIEDAVVKVLDKGFRTGDLG----G---- 343 (363)
T ss_pred cCCCCCC-----CcCCCCc-cChHHHHHHHHHHHHh--cCC----ChhhHHHHHHHHHHHHhccccccccC----C----
Confidence 9999999 9999999 9999999999999999 576 58999999999999999999999998 6
Q ss_pred cccccCHHHHHHHHHHHHHHHh
Q 015002 389 REHYLNTEEFIDAVADDLRARL 410 (414)
Q Consensus 389 ~~~~~sT~e~~daV~~~l~~~~ 410 (414)
..||.+.+++|.+.+..++
T Consensus 344 ---~~st~~~~kav~EEv~Kil 362 (363)
T KOG0786|consen 344 ---PGSTLVGCKAVGEEVLKIL 362 (363)
T ss_pred ---CCcchhhHHHHHHHHHHhc
Confidence 5777788888877776655
No 31
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=8.2e-75 Score=556.98 Aligned_cols=411 Identities=77% Similarity=1.253 Sum_probs=394.2
Q ss_pred CCccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCC
Q 015002 1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITP 80 (414)
Q Consensus 1 ~~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp 80 (414)
++|+||++.+|||.+.||+|.+.||..+.+.|+-+++++++.+||+|.+++++|.+.++.|+++|+++++|++||++.||
T Consensus 10 ~~~~kikv~~pvVemdGDEmTRiIW~~Ik~KLIlPyldldlkyyDLgie~RD~T~DqVTid~A~A~lky~V~iKCATITP 89 (422)
T KOG1526|consen 10 SGMSKIKVANPVVEMDGDEMTRIIWKLIKEKLILPYLDLDLKYYDLGIENRDATNDQVTIDAAEAILKYNVGIKCATITP 89 (422)
T ss_pred chhceeeccCCeEEecccHHHHHHHHHHHhhcccceeeeceeeeecCCcccccccceeeHHHHHHHHHhCceeEEeecCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeec
Q 015002 81 DEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVP 160 (414)
Q Consensus 81 ~~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~ 160 (414)
+..++.|++|++.|+|||.+||..|+..+++.||.|+++|.|.|+|..+|+|-|+..+|.|...+....+||.+++.|.|
T Consensus 90 DEaRv~Ef~LkkMWkSPNGTIRNILgGTVFREpIi~kniPrlVpgW~kPI~IGRHAfgDQYkatD~vv~~~gkl~l~f~~ 169 (422)
T KOG1526|consen 90 DEARVEEFNLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPIIIGRHAFGDQYKATDFVVPGPGKLELVFTP 169 (422)
T ss_pred cHHHHHHhhhHHHhcCCCcchhhhcCceeeccceecCCcccccCCCccceEEeeccccccceeeeEeecCCCeEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCc
Q 015002 161 EGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240 (414)
Q Consensus 161 ~~g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~ 240 (414)
.+|.....+.+++|++ ++++..+.+|.+.++-+|+.+|++|.+++.++++.+|-.|||.+||-|.++|+|++.++|+.+
T Consensus 170 ~dg~~~~~~~V~~f~~-~G~~~~m~~~dds~~~FAhssf~~Al~kk~pLylsTKNTILKkYDgrFKdiFqeiye~~yk~k 248 (422)
T KOG1526|consen 170 SDGTQKVTLKVYDFKG-SGVAAMMYNTDDSIRGFAHSSFQYALQKKWPLYLSTKNTILKKYDGRFKDIFQEIYEKQYKSK 248 (422)
T ss_pred CCCCcceeEEEEecCC-CceeEEEeeccchhhHHHHHHHHHHHHhcCceeeeccchHHHHhCChHHHHHHHHHHHHHHHH
Confidence 8887777788999988 788877889999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccc
Q 015002 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRV 320 (414)
Q Consensus 241 ~~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~ 320 (414)
|+..+|+|+|++||+|.+|++++-+.|||.|.|+.||.-||+.|+-.|||||+.|..++|+|++-.-|+.|||..|||+.
T Consensus 249 fe~~~IwYEHRLIDDmVAqa~KS~GGfvwAcKNYDGDVqSD~vAQg~GSLGlMTSVLv~pdGKT~EaEAAHGTVtRHyr~ 328 (422)
T KOG1526|consen 249 FEALGIWYEHRLIDDMVAQAMKSEGGFVWACKNYDGDVQSDIVAQGYGSLGLMTSVLVCPDGKTVEAEAAHGTVTRHYRM 328 (422)
T ss_pred HHhhcchhhhhhHHHHHHHHHhcCCceEEEeecCCCchhhhHHHhcccchhhheeEEEcCCCCeeeeeccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877889999999999999
Q ss_pred cccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHH
Q 015002 321 HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFID 400 (414)
Q Consensus 321 dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~d 400 (414)
+..|+..|.||||.|+||.--|.|+|.++.|+.+..+|+.||.|+..|+++|..|.||+..++| ..+|...++|+||.|
T Consensus 329 hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~~F~~~LE~aci~tve~G~MTKDLal~i~g-~~~r~~y~~T~eFid 407 (422)
T KOG1526|consen 329 HQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALAKFANALEKACIETVESGKMTKDLALCIHG-KVERSDYLNTEEFID 407 (422)
T ss_pred HhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhccchHhHHHHhcC-CccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877766 445667899999999
Q ss_pred HHHHHHHHHhhcC
Q 015002 401 AVADDLRARLSGK 413 (414)
Q Consensus 401 aV~~~l~~~~~~~ 413 (414)
+|.++|+..|.+.
T Consensus 408 av~~~L~~~~~~~ 420 (422)
T KOG1526|consen 408 AVASNLKKKLAQA 420 (422)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 32
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=96.93 E-value=0.019 Score=61.57 Aligned_cols=180 Identities=17% Similarity=0.185 Sum_probs=105.8
Q ss_pred ceEEEeeeCHHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeeeeH-HHH
Q 015002 179 GVALSMYNTDESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLI-DDM 256 (414)
Q Consensus 179 ~va~~~~~Tr~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~~V-Da~ 256 (414)
+++..+.--...++-+++.|..+|+..+-+ |.-.++.-. -|. +....| +.|=..+...++.+.-+-- |++
T Consensus 450 DIwRmcq~KD~pI~DWVkLAV~Rar~tg~paiFWLD~~RA---HDa---~lI~kV--~~yL~~hdt~gldi~Im~P~~A~ 521 (735)
T PF03971_consen 450 DIWRMCQTKDAPIRDWVKLAVNRARATGTPAIFWLDENRA---HDA---ELIKKV--EKYLKDHDTSGLDIRIMSPVEAT 521 (735)
T ss_dssp -EEEEEEE-HHHHHHHHHHHHHHHHHHT--EEEE--TTSH---HHH---HHHHHH--HHHHTTS--TT--EEEE-HHHHH
T ss_pred cchhhhcccCchHHHHHHHHHHHHHhhCCCeEEecCCCCc---cHH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHH
Confidence 454434445667899999999999998876 444443322 132 334444 2343333344677776654 444
Q ss_pred HHHH--hhCCCccEEEeCCcchhhHhhhhhhhc-C-C---ccccccceecCCCceEEEcc-ccCccccccccccc-CCCC
Q 015002 257 VAYA--LKSEGGYVWACKNYDGDVQSDFLAQGF-G-S---LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQK-GGET 327 (414)
Q Consensus 257 ~~~l--v~~P~~fViv~~NlfGDILSDlaa~l~-G-g---lGlapSanig~~~~~a~FEp-~HGSAP~~~~~dIa-Gk~i 327 (414)
-.-| ++.-..-+-||.|..=|+|+||.--|- | | |-+.|=-| . -++||. .-||||+|..+=+. |-=.
T Consensus 522 ~~sler~r~G~dTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLm~---G--GGLFETGAGGSAPKHVqQf~eEnhLR 596 (735)
T PF03971_consen 522 RFSLERIRAGKDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMN---G--GGLFETGAGGSAPKHVQQFVEENHLR 596 (735)
T ss_dssp HHHHHHHHTT---EEEE-HHHHHHHHHHHHHHHHS-STTSEEEEEBTT---S---EEEES-SS---HHHHHHHCCCS---
T ss_pred HHHHHHHHcCCCeEEeechHHHhhhcchhhhhhhccchhhhhhhhccc---C--CceeccCCCCCccHHHHHHHHcCccc
Confidence 3333 334444488999999999999997653 1 1 12222221 2 389999 78999998843222 2222
Q ss_pred ccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC
Q 015002 328 STNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 372 (414)
Q Consensus 328 ~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G 372 (414)
=+.+|-+||.+--|+||+...+|+...-.|+.|.+|+...|+++
T Consensus 597 -WDSLGEFlALa~Sle~l~~~~~n~ka~vLa~tLd~At~~~L~n~ 640 (735)
T PF03971_consen 597 -WDSLGEFLALAVSLEHLAQKTGNPKAKVLADTLDAATGKFLENN 640 (735)
T ss_dssp ---THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred -ccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 68899999999999999988888777788999999999999876
No 33
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=96.58 E-value=0.043 Score=59.04 Aligned_cols=171 Identities=14% Similarity=0.176 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-EEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeeee-HHHHHH--HHhhC
Q 015002 188 DESIRAFAEASMNTAYQKKWP-LYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRL-IDDMVA--YALKS 263 (414)
Q Consensus 188 r~~~eRiar~AFe~A~~r~~~-Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~~-VDa~~~--~lv~~ 263 (414)
...++-+++.|..+|+..+-+ |.-.++.-.- |. +....| +.|=......++.++-+- ++++-. .-+++
T Consensus 463 D~pI~DWVkLAV~Rar~sg~pavFWLD~~RaH---Da---~lI~kV--~~yL~~hdt~gldi~Im~p~~A~~~slerir~ 534 (741)
T TIGR00178 463 DAPIQDWVKLAVTRARATGTPAVFWLDPARAH---DA---QLIKKV--ETYLKDHDTEGLDIQILSPVEATRFSLARIRR 534 (741)
T ss_pred CchHHHHHHHHHHHHHhcCCCeEEEeCCCchh---HH---HHHHHH--HHHHHhcCCCCCceEeeCHHHHHHHHHHHHHc
Confidence 456888999999999998876 4444432111 22 223333 123212223366666664 444432 23344
Q ss_pred CCccEEEeCCcchhhHhhhhhhhcCC-----ccccccceecCCCceEEEcc-ccCcccccccccc-cCCCCccChhHHHH
Q 015002 264 EGGYVWACKNYDGDVQSDFLAQGFGS-----LGLMTSVLVCPDGKTIEAEA-AHGTVTRHYRVHQ-KGGETSTNSIASIF 336 (414)
Q Consensus 264 P~~fViv~~NlfGDILSDlaa~l~Gg-----lGlapSanig~~~~~a~FEp-~HGSAP~~~~~dI-aGk~i~ANP~a~Il 336 (414)
-+.-+-||.|..=|+|+||.--|-=| |-+.|=-| . -++||. .-||||+|..+=+ -|-=. =+.+|-+|
T Consensus 535 G~dTISVTGNVLRDYLTDLFPILElGTSAKMLSIVPLm~---G--GGLFETGAGGSAPKHVqQf~eEnhLR-WDSLGEFl 608 (741)
T TIGR00178 535 GEDTISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMA---G--GGLFETGAGGSAPKHVQQFLEENHLR-WDSLGEFL 608 (741)
T ss_pred CCCeEEEechhHHhhhcchhhhhhhccchhhhhhhhccc---C--CceecCCCCCCccHHHHHHHHcCccc-ccchhhHH
Confidence 44448899999999999998765311 11222222 2 279999 7899999884422 23223 68899999
Q ss_pred HHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC
Q 015002 337 AWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 372 (414)
Q Consensus 337 S~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G 372 (414)
+.+--|+||+...+|+.-.-.|+.|++|+...|+++
T Consensus 609 ALa~Sle~la~~~~n~ka~vLa~tLd~At~k~L~n~ 644 (741)
T TIGR00178 609 ALAASLEHLGNATGNPKALVLADTLDAATGKLLDNN 644 (741)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHhCC
Confidence 999999999988777777778999999999999876
No 34
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion]
Probab=94.90 E-value=0.89 Score=48.38 Aligned_cols=176 Identities=18% Similarity=0.174 Sum_probs=109.4
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeee-eHHHHHHH--H
Q 015002 184 MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHR-LIDDMVAY--A 260 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~-~VDa~~~~--l 260 (414)
+......++-+++.|.++||..+-++.+---.+ +..|.-...-++..- +++ ...++.+.-+ .+.+|-.- .
T Consensus 461 cq~kdapi~dWVkLaV~RarlS~~pavFWLDp~--Rahd~~li~kV~~yL-kdh----dt~GldI~Ilsp~ea~~~sl~r 533 (744)
T COG2838 461 CQVKDAPIRDWVKLAVTRARLSGMPAVFWLDPY--RAHDKELIKKVEAYL-KDH----DTNGLDIQILSPVEAMRYSLER 533 (744)
T ss_pred HhcccchHHHHHHHHHHHHhhcCCceEEEeCcC--ccchHHHHHHHHHHh-hhc----CCCCcceEEecHHHHHHHHHHH
Confidence 334556788999999999999887643321111 112322333232221 221 1124444443 34444333 3
Q ss_pred hhCCCccEEEeCCcchhhHhhhhhhhcCCcccccccee---cC--CCceEEEcc-ccCcccccccccccCCC-CccChhH
Q 015002 261 LKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLV---CP--DGKTIEAEA-AHGTVTRHYRVHQKGGE-TSTNSIA 333 (414)
Q Consensus 261 v~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSani---g~--~~~~a~FEp-~HGSAP~~~~~dIaGk~-i~ANP~a 333 (414)
+++-++-+-||.|..-|+|+||.--|- || .|+-+ =| .| .+|||. ..||||+|..+= .-.| .-=+.+|
T Consensus 534 l~~G~DtIsvTGNvLRDYlTDLFPIlE--LG--TSAKMLSiVPlmaG-GgmfETGAGGSAPKhVqQ~-~eENhLRWDSLG 607 (744)
T COG2838 534 LRRGEDTISVTGNVLRDYLTDLFPILE--LG--TSAKMLSIVPLMAG-GGMFETGAGGSAPKHVQQL-VEENHLRWDSLG 607 (744)
T ss_pred HHcCCceeEecchHHHHHHhhhhhHhh--cc--cccchheeeeeccC-CceeecCCCCCCcHHHHHH-HHhcccchhhHH
Confidence 345455588999999999999987753 22 23321 01 12 379999 689999887332 2222 1157889
Q ss_pred HHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcC
Q 015002 334 SIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESG 372 (414)
Q Consensus 334 ~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G 372 (414)
-+|+.+.-|+|+|.--+|+.-+-.|+.|+.|..+.|.+.
T Consensus 608 EFLALa~sle~~~~k~gn~kAkvLa~~LD~AtgklLdn~ 646 (744)
T COG2838 608 EFLALAASLEHLGNKTGNAKAKVLAKALDAATGKLLDNN 646 (744)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999977777667778899999999888654
No 35
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=93.75 E-value=0.045 Score=54.93 Aligned_cols=137 Identities=20% Similarity=0.089 Sum_probs=72.1
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--CCEEEEeCCCcccccchHHH-H----HHHHHHHhhcCCccccCCeEEe-eeeHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQK-K--WPLYLSTKNTILKKYDGRFK-D----IFQEVYEANWKSKFEAAGIWYE-HRLID 254 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--~~Vt~v~KaNvl~~tdglf~-~----~~~eva~~~yp~~~~~~~I~~~-~~~VD 254 (414)
..+|.+.+.+.++...+.-++. + ++-..|-=-|=-.--.|+|= | +.-.+.+..-. +|.+. ..=.|
T Consensus 150 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~------gi~v~GP~paD 223 (298)
T PF04166_consen 150 KLITKERILEKIRLLHKSLKRDFGIENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAE------GIDVFGPYPAD 223 (298)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTT-SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHT------THEEEEEE-HH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhC------CCceECCCccH
Confidence 5578888888888877666552 2 22222222232221244443 1 11112111112 66655 44556
Q ss_pred HHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhH
Q 015002 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (414)
Q Consensus 255 a~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a 333 (414)
++-.+- .-++| ++|+ || -|++-.=.=.+++--+.|+--.--.----|.||||- ||||||+ |||.+
T Consensus 224 t~F~~~--~~~~fD~vva--MY----HDQGlip~K~l~f~~gVnvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~~~s 289 (298)
T PF04166_consen 224 TVFGKA--NRGKFDAVVA--MY----HDQGLIPFKLLGFDEGVNVTLGLPIIRTSPDHGTAF-----DIAGKGI-ADPSS 289 (298)
T ss_dssp HHTSHH--HHTT-SEEEE--SS----HHHHHHHHHHHCTTTSEEEEESSSSEEEEESS-S-C-----CGTTTTT-S-THH
T ss_pred Hhhhcc--hhccCCEEEE--ee----cccCccceeecccccceEEecCCCeeeecCCCCchh-----hhhCCCC-CChHH
Confidence 664443 33566 5555 44 567666666667767777642110223458999999 9999999 99999
Q ss_pred HHHHHHH
Q 015002 334 SIFAWSR 340 (414)
Q Consensus 334 ~IlS~am 340 (414)
|+-|.-+
T Consensus 290 ~~~Ai~~ 296 (298)
T PF04166_consen 290 MIEAIKL 296 (298)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 36
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=93.00 E-value=0.073 Score=54.04 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=82.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEEe-eeeHHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~~-~~~VDa 255 (414)
..+|.+.+.+.++.+.+.-++-+ + |+ .+.-..+.- -.|+| +|..+.+. -++.. +.++.+. ..=.|+
T Consensus 176 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAi~~~~----~~G~~v~GP~paDt 249 (326)
T PRK03371 176 DTLNTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAG--ENGLFGDEEIRIVTPAIEAMR----AKGMDVYGPCPPDT 249 (326)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHHH----HCCCcccCCCCchh
Confidence 45788888888888777555322 2 43 333333443 35677 44333321 01110 1133332 344455
Q ss_pred HHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhHH
Q 015002 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 334 (414)
Q Consensus 256 ~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~ 334 (414)
+-.+-.+ ++| ++|| || -|++-.-.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|
T Consensus 250 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkG~-A~~~S~ 315 (326)
T PRK03371 250 VFLQAYE--GQYDMVVA--MY----HDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAF-----DIAWTGK-AKSESM 315 (326)
T ss_pred hcccccc--cCCCEEEE--cc----ccccchhheecccccceEEecCCCeeEecCCCCchh-----hhhcCCc-CCHHHH
Confidence 5433333 467 5555 33 467777777788888888752210122357899999 9999999 999999
Q ss_pred HHHHHHHHH
Q 015002 335 IFAWSRGLA 343 (414)
Q Consensus 335 IlS~ammL~ 343 (414)
+-|.-+..+
T Consensus 316 ~~Ai~lA~~ 324 (326)
T PRK03371 316 AVSIKLAMQ 324 (326)
T ss_pred HHHHHHHHH
Confidence 998766543
No 37
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=92.96 E-value=0.073 Score=54.18 Aligned_cols=141 Identities=16% Similarity=0.044 Sum_probs=81.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC--C-CE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEEe-eeeHHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQKK--W-PL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~--~-~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~~-~~~VDa 255 (414)
..+|.+.+.+.++.+.+.-++.+ + |+ .+.-..+.= -.|+| +|..+.+. -++. ++.++.+. ..=.|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAI~~~----~~~G~~v~GP~paDt 250 (332)
T PRK00232 177 DAITPERLEEVIRILHADLRRKGIAEPRIAVCGLNPHAG--EGGHFGREEIDIIIPALEEL----RAEGINLVGPLPADT 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeeCCCCC--CCCCCCHHHHHHHHHHHHHH----HhCCCCcCCCCCchh
Confidence 55788999988888887666333 2 43 222223332 24565 33222210 0000 00133332 344555
Q ss_pred HHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhHH
Q 015002 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 334 (414)
Q Consensus 256 ~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~ 334 (414)
+-.+-.+ +.| ++|| || -|++-.=+=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|
T Consensus 251 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAf-----DIAGkg~-A~~~S~ 316 (332)
T PRK00232 251 LFQPAYL--GDADAVLA--MY----HDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTAL-----DLAGKGI-ADVGSF 316 (332)
T ss_pred hcccccc--CCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHH
Confidence 5444333 467 5555 33 467766677778878888752210122357899999 9999999 999999
Q ss_pred HHHHHHHHHH
Q 015002 335 IFAWSRGLAH 344 (414)
Q Consensus 335 IlS~ammL~~ 344 (414)
+-|.-+..+.
T Consensus 317 ~~Ai~lA~~~ 326 (332)
T PRK00232 317 ITALNLAIRM 326 (332)
T ss_pred HHHHHHHHHH
Confidence 9997776554
No 38
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.76 E-value=0.081 Score=53.86 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=84.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCC---CCE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEEe-eeeHHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQKK---WPL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLIDD 255 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~---~~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~~-~~~VDa 255 (414)
..+|.+.+.+.++.+.+.-++-+ -|+ .+.-..+.- -.|+| +|..+-+. -++. ++.++.++ ..=.|.
T Consensus 177 ~~it~e~i~~~i~~~~~~l~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAI~~~----~~~g~~v~GP~paDt 250 (332)
T PRK03743 177 DYVTKERVLDYIQRCTKALEKLGIKNPKIAVAGLNPHSG--EHGLFGDEEVDEIIPAVEAA----QEMGINVEGPVPADS 250 (332)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHH----HHCCCcccCCCCchh
Confidence 55789999999998888766433 243 333333443 24666 33222210 0010 01133333 444555
Q ss_pred HHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhHH
Q 015002 256 MVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIAS 334 (414)
Q Consensus 256 ~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~ 334 (414)
+-.+-.+ ++| ++|| || -|++-.-.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+|
T Consensus 251 ~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DIAGkg~-A~~~S~ 316 (332)
T PRK03743 251 VFHLALQ--GRYDAVLS--LY----HDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAF-----DIAGTGK-ASSVSM 316 (332)
T ss_pred hcccccc--cCCCEEEE--cc----cccCChhheecccCCceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHHH
Confidence 5444333 457 5555 33 577777777788888888752210123357899999 9999999 999999
Q ss_pred HHHHHHHHHH
Q 015002 335 IFAWSRGLAH 344 (414)
Q Consensus 335 IlS~ammL~~ 344 (414)
+-|.-+..+.
T Consensus 317 ~~Ai~lA~~~ 326 (332)
T PRK03743 317 EEAILLAAKY 326 (332)
T ss_pred HHHHHHHHHH
Confidence 9997776655
No 39
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.60 E-value=0.088 Score=53.02 Aligned_cols=135 Identities=10% Similarity=0.024 Sum_probs=79.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHhCCCCE-EEEeCCCcccccchHH-HH------HHHHHHHhhcCCccccCCeEEe--eeeH
Q 015002 184 MYNTDESIRAFAEASMNTAYQKKWPL-YLSTKNTILKKYDGRF-KD------IFQEVYEANWKSKFEAAGIWYE--HRLI 253 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r~~~V-t~v~KaNvl~~tdglf-~~------~~~eva~~~yp~~~~~~~I~~~--~~~V 253 (414)
..+|.+.+.+.++.+.+.-+ .-|+ .+.-..+.= -.|+| +| ..++. ++ -. ++.+. ..=.
T Consensus 157 ~~it~~~i~~~i~~~~~~l~--~PrIaV~gLNPHAG--E~G~~G~EE~iI~PAi~~~-~~-~~------g~~~~~GP~pa 224 (307)
T PRK03946 157 QLIKVKKLVKFLLDFYKSTK--FKKIGVLGLNPHAG--DNGVIGGEEEEIKKAIKKA-NQ-FL------GFEIFFGPLVP 224 (307)
T ss_pred HHhCHHHHHHHHHHHHHHhc--CCCEEEEeeCCCCC--CCCCCCcchHHHHHHHHHH-HH-hc------CCCcccCCcCc
Confidence 45788888887777666433 2343 333333332 23555 22 22222 10 11 34444 5556
Q ss_pred HHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCC-CccCh
Q 015002 254 DDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE-TSTNS 331 (414)
Q Consensus 254 Da~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~-i~ANP 331 (414)
|++-.+-.+ ++| ++|| || -|++-.=+=.+++-.+.|+--.--.----|-||||- |||||| + |||
T Consensus 225 Dt~F~~~~~--~~~D~vla--MY----HDQGlip~K~l~F~~gVnvTlGLP~iRTSpDHGTAf-----DIAGkg~~-A~~ 290 (307)
T PRK03946 225 DSAFTPNKR--KKFNYYVA--MY----HDQGLAPLKALYFDESINVSLNLPILRTSVDHGTAF-----DIAYKNAK-ANT 290 (307)
T ss_pred hhhcccccc--cCCCEEEE--Cc----cccCchhheeeccCcceEEecCCCEeEecCCCCchh-----hhcCCCCc-CCH
Confidence 666544333 577 6665 33 467666677777778888642110122357899999 999999 9 999
Q ss_pred hHHHHHHHHHHHH
Q 015002 332 IASIFAWSRGLAH 344 (414)
Q Consensus 332 ~a~IlS~ammL~~ 344 (414)
.+|+-|.-+..+.
T Consensus 291 ~S~~~Ai~lA~~~ 303 (307)
T PRK03946 291 KSYLNAIKYAINL 303 (307)
T ss_pred HHHHHHHHHHHHH
Confidence 9999997665554
No 40
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=92.55 E-value=0.089 Score=53.47 Aligned_cols=141 Identities=12% Similarity=-0.039 Sum_probs=85.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEEe-eeeHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~~-~~~VD 254 (414)
..+|.+.+.+.++.+.+.-++. + + |+ .+.-..+.- -+|+| +|-.+.+. -++. ++.++.+. ..=.|
T Consensus 172 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAi~~~----~~~Gi~v~GP~paD 245 (329)
T PRK01909 172 AALTIDGLVETLAIIDRDLRRDFGLAAPRILVTGLNPHAG--ENGYLGREEIDVIEPALARA----RAAGIDARGPYPAD 245 (329)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHH----HHCCCCccCCCCch
Confidence 5578999999999988876643 2 2 44 333333333 25666 44332221 0000 01133322 44456
Q ss_pred HHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhH
Q 015002 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (414)
Q Consensus 255 a~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a 333 (414)
++-.+..+ +.| ++|| || -|++-.-.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+
T Consensus 246 t~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkg~-A~~~S 311 (329)
T PRK01909 246 TLFQPRYL--EDADCVLA--MF----HDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTAL-----DLAGTGR-ADPGS 311 (329)
T ss_pred hhcccccc--cCCCEEEE--cc----ccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHH
Confidence 65544443 457 6655 33 577777777788888888752210123357899999 9999999 99999
Q ss_pred HHHHHHHHHHH
Q 015002 334 SIFAWSRGLAH 344 (414)
Q Consensus 334 ~IlS~ammL~~ 344 (414)
|+-|.-+..+.
T Consensus 312 ~~~Ai~lA~~~ 322 (329)
T PRK01909 312 MIAAIDTAVTM 322 (329)
T ss_pred HHHHHHHHHHH
Confidence 99997766554
No 41
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.44 E-value=0.094 Score=53.45 Aligned_cols=141 Identities=18% Similarity=0.063 Sum_probs=82.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C---CCE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEE-eeeeHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQK-K---WPL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWY-EHRLID 254 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~---~~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~-~~~~VD 254 (414)
..+|.+.+.+.++.+.+.-++. + -|+ .+.-..+.- -.|+| +|-.+.+. -++. ++.++.+ -..=.|
T Consensus 181 ~~it~e~i~~~i~l~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAI~~~----~~~Gi~v~GP~paD 254 (336)
T PRK05312 181 AALTPELIVATARITAADLRRRFGIASPRLAVAGLNPHAG--EGGALGREDIDIIAPAIEQL----RAEGIDARGPLPAD 254 (336)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHH----HHCCCCccCCCCch
Confidence 5578999999999888866633 2 244 333333333 24666 33322221 0010 0013322 233445
Q ss_pred HHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhH
Q 015002 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (414)
Q Consensus 255 a~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a 333 (414)
.+-.+-.+ ++| ++|+ || -|++-.-.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+
T Consensus 255 t~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAf-----DIAGkg~-A~~~S 320 (336)
T PRK05312 255 TMFHAAAR--ATYDAAIC--MY----HDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAF-----DIAGKGI-ARPDS 320 (336)
T ss_pred hhcccccc--cCCCEEEE--cc----cccCChhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHH
Confidence 55443322 467 5555 33 467766677778878888752210122347899999 9999999 99999
Q ss_pred HHHHHHHHHHH
Q 015002 334 SIFAWSRGLAH 344 (414)
Q Consensus 334 ~IlS~ammL~~ 344 (414)
|+-|.-+..+.
T Consensus 321 ~~~Ai~lA~~~ 331 (336)
T PRK05312 321 LIAALRLAAQM 331 (336)
T ss_pred HHHHHHHHHHH
Confidence 99997776654
No 42
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=92.36 E-value=0.097 Score=53.47 Aligned_cols=140 Identities=10% Similarity=-0.060 Sum_probs=84.3
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C--C-CE-EEEeCCCcccccchHH-HHH-------HHHHHHhhcCCccccCCeEEe-
Q 015002 184 MYNTDESIRAFAEASMNTAYQK-K--W-PL-YLSTKNTILKKYDGRF-KDI-------FQEVYEANWKSKFEAAGIWYE- 249 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~--~-~V-t~v~KaNvl~~tdglf-~~~-------~~eva~~~yp~~~~~~~I~~~- 249 (414)
..+|.+.+.+.++.+.+.-++. + + |+ .+.-..+.- -.|+| +|- .++. +++.+ ++.+.
T Consensus 179 ~~it~~~I~~~i~~~~~~l~~~~gi~~PrIaV~GLNPHAG--E~G~~G~EE~~iI~PAIe~~-r~~g~------g~~v~G 249 (345)
T PRK02746 179 KTLTPELITSKLDLLIDFLQRDFGIEKPRIAIAGLNPHAG--EQGQLGTEEKDWLIPWLESW-RQKNP------DIQLLG 249 (345)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCcEEEEeeCCCCC--CCCCCcHHHHHHHHHHHHHH-HhcCC------CceeeC
Confidence 4578888888888777655532 2 2 44 333333333 24555 332 2222 22222 34443
Q ss_pred eeeHHHHHHHHhhC------CCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccc
Q 015002 250 HRLIDDMVAYALKS------EGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQ 322 (414)
Q Consensus 250 ~~~VDa~~~~lv~~------P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dI 322 (414)
..=.|.+-.+-.+. .+.| ++|| || -|++-.=+=.+++-.+.|+--.--.----|-||||- ||
T Consensus 250 P~paDt~F~~~~~~~~~~~~~~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAf-----DI 318 (345)
T PRK02746 250 PIPPDTCWVSPAQAWYGKGVAEAPDGYLA--LY----HDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAF-----DI 318 (345)
T ss_pred CCCchhhccccccccccccccCCCCEEEE--Cc----ccCCChhheeeccCcceEEecCCCeeEeCCCCcchh-----hh
Confidence 45566665555442 2568 6666 33 567777777788888888752210122357899999 99
Q ss_pred cCCCCccChhHHHHHHHHHHHH
Q 015002 323 KGGETSTNSIASIFAWSRGLAH 344 (414)
Q Consensus 323 aGk~i~ANP~a~IlS~ammL~~ 344 (414)
||||+ |||.+|+-|.-+..+.
T Consensus 319 AGkg~-A~~~S~~~Ai~lA~~l 339 (345)
T PRK02746 319 AGKGI-ARPQSMKAAIKLAWEL 339 (345)
T ss_pred hcCCC-CCHHHHHHHHHHHHHH
Confidence 99999 9999999997766554
No 43
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=92.27 E-value=0.096 Score=52.90 Aligned_cols=59 Identities=20% Similarity=0.062 Sum_probs=42.9
Q ss_pred hhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhHHHHHHHHHHHH
Q 015002 280 SDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAH 344 (414)
Q Consensus 280 SDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a~IlS~ammL~~ 344 (414)
-|++-.-.-=+|+--|.|+.-.--.----|-||||- ||||||| |||.+++-|..+.-+.
T Consensus 267 HDQgliplK~l~Fd~~VNvtlGLPfiRTS~DHGTAf-----DiAgkGi-A~~~S~~~Ai~lA~~l 325 (332)
T COG1995 267 HDQGLIPLKYLGFDRGVNVTLGLPFIRTSVDHGTAF-----DIAGKGI-ADPGSLIAAIKLAAKL 325 (332)
T ss_pred ccccchhhhhhccccceEEecCCCeeeecCCccchh-----hhhcCCc-CCchHHHHHHHHHHHH
Confidence 366666666677888888763210223357899999 9999999 9999999887665544
No 44
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=92.23 E-value=0.1 Score=52.84 Aligned_cols=140 Identities=15% Similarity=0.011 Sum_probs=81.0
Q ss_pred eeeCHHHHHHHHHHHHHHHHhC-C---CCE-EEEeCCCcccccchHH-HHHHHHHH--HhhcCCccccCCeEEe-eeeHH
Q 015002 184 MYNTDESIRAFAEASMNTAYQK-K---WPL-YLSTKNTILKKYDGRF-KDIFQEVY--EANWKSKFEAAGIWYE-HRLID 254 (414)
Q Consensus 184 ~~~Tr~~~eRiar~AFe~A~~r-~---~~V-t~v~KaNvl~~tdglf-~~~~~eva--~~~yp~~~~~~~I~~~-~~~VD 254 (414)
..+|.+.+.+-++.+.+.-++. + -|+ .+.-..+.- -.|+| +|-.+.+. -++. ++.++.++ ..=.|
T Consensus 169 ~~it~~~i~~~i~~~~~~l~~~~gi~~PrIaV~gLNPHAG--E~G~~G~EE~~iI~PAI~~~----~~~G~~v~GP~paD 242 (320)
T TIGR00557 169 AALTPELLVEKLRILHADLRRDFGIARPRIAVAGLNPHAG--EGGHLGREEIDIIIPALEAL----RAEGIDLIGPLPAD 242 (320)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCCCCC--CCCCCcHHHHHHHHHHHHHH----HHCCCcccCCCCch
Confidence 4478999999998888877643 2 244 333333333 24665 33222110 0000 00133332 34445
Q ss_pred HHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCcccccccccccCCCCccChhH
Q 015002 255 DMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIA 333 (414)
Q Consensus 255 a~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~i~ANP~a 333 (414)
++-.+-.+ ++| ++|| || -|++-.=.=.+++-.+.|+--.--.----|-||||- ||||||+ |||.+
T Consensus 243 t~F~~~~~--~~~D~vva--MY----HDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAf-----DIAGkg~-A~~~S 308 (320)
T TIGR00557 243 TLFHPAAL--AKYDAVLA--MY----HDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAF-----DIAGKGK-ADPGS 308 (320)
T ss_pred hhcccccc--cCCCEEEE--Cc----ccccchhheecccCcceEEecCCCeeEeCCCCcchh-----hhhcCCC-CCHHH
Confidence 55433322 567 6665 33 467777777778888888752210122347899999 9999999 99999
Q ss_pred HHHHHHHHHH
Q 015002 334 SIFAWSRGLA 343 (414)
Q Consensus 334 ~IlS~ammL~ 343 (414)
|+-|.-+..+
T Consensus 309 ~~~Ai~~A~~ 318 (320)
T TIGR00557 309 LIAAIKLAIE 318 (320)
T ss_pred HHHHHHHHHH
Confidence 9988666543
No 45
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=88.37 E-value=0.24 Score=51.69 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=19.4
Q ss_pred CCCEEEEeecc-CCcccccccc
Q 015002 127 TKPICIGRHAF-GDQYRATDTV 147 (414)
Q Consensus 127 ~iDivivREnt-eg~Y~g~e~~ 147 (414)
++|++|+|||| ||+|+|.++.
T Consensus 140 ~iD~vivREnt~Eg~Y~g~e~~ 161 (409)
T TIGR00127 140 ATDFVVPGPGKLELVYKPKDGT 161 (409)
T ss_pred ceEEEEecCCeeeEEEECCCCC
Confidence 79999999999 9999999863
No 46
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=84.60 E-value=0.46 Score=49.71 Aligned_cols=15 Identities=7% Similarity=0.649 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhcC
Q 015002 224 RFKDIFQEVYEANWK 238 (414)
Q Consensus 224 lf~~~~~eva~~~yp 238 (414)
.|++++.++++++||
T Consensus 228 ~~~eva~~~~~~eyp 242 (410)
T PLN00103 228 IFQEVYEAQWKSKFE 242 (410)
T ss_pred HHHHHHHhhhhhhCC
Confidence 566666555555565
No 47
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=51.65 E-value=7.9 Score=40.71 Aligned_cols=18 Identities=0% Similarity=-0.020 Sum_probs=17.3
Q ss_pred CCCEEEEeecc-CCccccc
Q 015002 127 TKPICIGRHAF-GDQYRAT 144 (414)
Q Consensus 127 ~iDivivREnt-eg~Y~g~ 144 (414)
++|++|+|||| ||+|++.
T Consensus 143 ~id~vi~rent~e~~y~~~ 161 (413)
T PTZ00435 143 ATDFVVDGPGKLELVFTPA 161 (413)
T ss_pred ceEEEEecCCEEEEEEecC
Confidence 79999999999 9999998
No 48
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=50.89 E-value=12 Score=38.22 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.0
Q ss_pred ecccEEEECCC--CchHHHHHHHH
Q 015002 8 VANPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~~ 29 (414)
|+.+|++-.|| ||||||+-.++
T Consensus 1 ~~~~iaIT~GDpaGIGpEii~ka~ 24 (326)
T PRK03371 1 MTKIIAVTMGDPAGIGPEIIIKSL 24 (326)
T ss_pred CCCcEEEeCCCCcchHHHHHHHHh
Confidence 67889999999 99999987664
No 49
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=39.56 E-value=24 Score=36.11 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=18.4
Q ss_pred ecccEEEECCC--CchHHHHHHHH
Q 015002 8 VANPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 8 m~~~I~vi~GD--GIGpEv~~~~~ 29 (414)
|..+|++--|| ||||||+-.++
T Consensus 3 ~~p~iaIT~GDpaGIGpEIi~ka~ 26 (332)
T PRK00232 3 MKPRIAITPGDPAGIGPELVAKLL 26 (332)
T ss_pred CCCcEEEeCCCCcccHHHHHHHHH
Confidence 34689999999 99999987665
No 50
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=39.27 E-value=17 Score=34.64 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=25.3
Q ss_pred ccccccceecCCCceEEEccccCcccccccccccCCC
Q 015002 290 LGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGE 326 (414)
Q Consensus 290 lGlapSanig~~~~~a~FEp~HGSAP~~~~~dIaGk~ 326 (414)
||..|-+|-|+.+ ..|-|.|||-- |+.|+=
T Consensus 156 LGCVp~~~AGd~g--g~~CPCHGSHY-----dasGRI 185 (210)
T KOG1671|consen 156 LGCVPIANAGDYG--GYYCPCHGSHY-----DASGRI 185 (210)
T ss_pred ccccccccccccC--ceecccccccc-----cccCce
Confidence 6888999999875 78999999977 888863
No 51
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=38.55 E-value=25 Score=36.09 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=17.7
Q ss_pred cccEEEECCC--CchHHHHHHHH
Q 015002 9 ANPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 9 ~~~I~vi~GD--GIGpEv~~~~~ 29 (414)
..+|++-.|| ||||||+-.++
T Consensus 3 ~p~iaIT~GDpaGIGpEii~ka~ 25 (336)
T PRK05312 3 MRPLALSLGDPAGIGPEIALKAW 25 (336)
T ss_pred CCeEEEeCCCCcchHHHHHHHHH
Confidence 4689999999 99999987664
No 52
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type. The monomeric type of isocitrate dehydrogenase has been found so far in a small number of species, including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. It is NADP-specific.
Probab=36.22 E-value=90 Score=34.56 Aligned_cols=112 Identities=18% Similarity=0.310 Sum_probs=66.6
Q ss_pred CCccccccccc-cCCCcceeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCC
Q 015002 138 GDQYRATDTVI-QGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKN 215 (414)
Q Consensus 138 eg~Y~g~e~~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~Ka 215 (414)
+|+|....... ...+++++.|+..+|+.. .+ .....-..+-.++ .++|.+....+.+..++-|++.+--..+=-|+
T Consensus 179 gDFy~~EkSvt~~~a~~~~Ie~~~~~G~~~-vL-K~~~~l~~gEviDat~ms~~aL~~F~~~~i~~Ak~~gvLfSlHlKA 256 (741)
T TIGR00178 179 GDFYGSEKSATIDAAGSVKIELIAKDGSST-VL-KAKLPLLDGEIIDSSVMSKKALRNFIEEEIEDAKEEGVLLSLHLKA 256 (741)
T ss_pred CCCcCCceeEEecCCCeEEEEEEcCCCCEE-Ee-cCCCccCCCCEeehhhhCHHHHHHHHHHHHHHHHHcCcEEEeeehh
Confidence 45555543332 356677778887766421 11 1111111334456 88999999999999999999876545555599
Q ss_pred CcccccchH-HH---H-HHHHHHHhhcCCccccCCeEEeeee
Q 015002 216 TILKKYDGR-FK---D-IFQEVYEANWKSKFEAAGIWYEHRL 252 (414)
Q Consensus 216 Nvl~~tdgl-f~---~-~~~eva~~~yp~~~~~~~I~~~~~~ 252 (414)
+-||.+|-. |- + -|.+++ +.|.+.|+..++..+.=+
T Consensus 257 TMMKVSDPIiFGhaV~vffkdvF-~k~~~~~~~~Gvn~nnGl 297 (741)
T TIGR00178 257 TMMKVSDPIMFGHAVREFYKDAF-AKHAEVLKQLGVDVNNGI 297 (741)
T ss_pred eeecccCceehhHHHHHHHHHHH-HHHHHHHHHcCCCcCcch
Confidence 999999863 21 2 233444 245555555555555433
No 53
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=34.79 E-value=36 Score=34.86 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.4
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 015002 10 NPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~~ 29 (414)
.+|++-.|| ||||||+-.++
T Consensus 6 p~iaIT~GDpaGIGpEii~kal 27 (329)
T PRK01909 6 LQIAITTGEPAGVGPELTVRAL 27 (329)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 578999999 99999987775
No 54
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=34.37 E-value=37 Score=34.99 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=19.0
Q ss_pred eecccEEEECCC--CchHHHHHHHH
Q 015002 7 KVANPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 7 ~m~~~I~vi~GD--GIGpEv~~~~~ 29 (414)
.|..+|++-.|| ||||||+-.++
T Consensus 7 ~~~p~IaIT~GDpaGIGPEii~ka~ 31 (345)
T PRK02746 7 DPRPRLAITLGDPAGIGPEVILKAL 31 (345)
T ss_pred CCCCcEEEeCCCCcchHHHHHHHHH
Confidence 344689999999 99999987765
No 55
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=34.32 E-value=32 Score=35.28 Aligned_cols=20 Identities=15% Similarity=-0.082 Sum_probs=17.3
Q ss_pred ccEEEECCC--CchHHHHHHHH
Q 015002 10 NPIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~~ 29 (414)
.+|++-.|| ||||||+-.++
T Consensus 4 p~iaIT~GDpaGIGpEii~ka~ 25 (332)
T PRK03743 4 PIIAIPIGDPAGIGPEIVVKTL 25 (332)
T ss_pred CeEEEeCCCCcchHHHHHHHHH
Confidence 579999999 99999987664
No 56
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=33.09 E-value=2.3e+02 Score=32.34 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHHHHHhCCC--CEEEE---eCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEe-eeeHHHHHHHH
Q 015002 187 TDESIRAFAEASMNTAYQKKW--PLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 260 (414)
Q Consensus 187 Tr~~~eRiar~AFe~A~~r~~--~Vt~v---~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~~~~l 260 (414)
|-+..-.|+..|-++|+.-+. ||-+. ++.|.--...-.-++.++-+ ++.+| ++.++ ++.+|++.-.-
T Consensus 602 taeqLa~IA~~aa~~ar~lGiePRVALLS~Sn~Gse~~k~~~~vreA~~ll-k~~~~------~l~~dGemq~D~Al~~~ 674 (752)
T PRK07232 602 TAEELAEIALMAAEEVRRFGIEPRVALLSHSNFGSSDSPSARKMREAVELL-RERAP------DLEVDGEMHGDAALNEE 674 (752)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCeEEEEeccccCCCCCCcHHHHHHHHHHH-HhhCC------CcEEEEechHHHhCCHH
Confidence 556777788888999987653 67776 55553322333455555554 45678 67776 56677774332
Q ss_pred h---hCCCc-c-----EEEeCCcc-hhhHhhhhhhhcCCc
Q 015002 261 L---KSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGSL 290 (414)
Q Consensus 261 v---~~P~~-f-----Viv~~Nlf-GDILSDlaa~l~Ggl 290 (414)
+ +-|.. . |+|.||+. |+|+.-+.--+.|+.
T Consensus 675 va~~K~p~s~vaG~ANVLIfPdLeaGNI~yKllq~l~g~~ 714 (752)
T PRK07232 675 IRKDLYPFSRLKGPANVLVMPNLEAANISYNLLKELGGGV 714 (752)
T ss_pred HHHhhCCCCccCCcCCEEEeCCchhhHHHHHHHHHhcCCe
Confidence 2 23322 2 99999986 899888887776653
No 57
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.76 E-value=3.5e+02 Score=25.37 Aligned_cols=95 Identities=16% Similarity=0.150 Sum_probs=66.1
Q ss_pred eCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEee-eeHHHHHHHHhhCC
Q 015002 186 NTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEH-RLIDDMVAYALKSE 264 (414)
Q Consensus 186 ~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~-~~VDa~~~~lv~~P 264 (414)
..-+..||++--|.+.|.+. ..|.++|----|...+.-|++..+++...+-| =|..-| ..-|-..+++-+.+
T Consensus 81 V~v~~le~i~~~al~rA~~~-aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp------liatlHrrsr~P~v~~ik~~~ 153 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEE-ADVIIIDEIGPMELKSKKFREAVEEVLKSGKP------LIATLHRRSRHPLVQRIKKLG 153 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhc-CCEEEEecccchhhccHHHHHHHHHHhcCCCc------EEEEEecccCChHHHHhhhcC
Confidence 45678999999999999987 67999999999999999999999999744434 233333 33344444444444
Q ss_pred CccEEEeCCcchhhHhhhhhhhc
Q 015002 265 GGYVWACKNYDGDVQSDFLAQGF 287 (414)
Q Consensus 265 ~~fViv~~NlfGDILSDlaa~l~ 287 (414)
.-+|++++-=-+-|+..+.+.|-
T Consensus 154 ~v~v~lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 154 GVYVFLTPENRNRILNEILSVLK 176 (179)
T ss_pred CEEEEEccchhhHHHHHHHHHhc
Confidence 44464776444477777776654
No 58
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.00 E-value=28 Score=36.31 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeeeeHHHHHHHHhhCCCcc----
Q 015002 192 RAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGY---- 267 (414)
Q Consensus 192 eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa~~~~lv~~P~~f---- 267 (414)
-|++|-.|++|+.+.-.+.+++- ...++++.|- .=.--+.-|-...|+|+..=.+|
T Consensus 230 aRlVRelF~lArekaPsIIFiDE--------------IDAIg~kR~d------~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDE--------------IDAIGAKRFD------SGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEec--------------hhhhhccccc------CCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 48999999999997655665553 3445555553 22334566778889999877777
Q ss_pred ---EEEeCCcchhhH
Q 015002 268 ---VWACKNYDGDVQ 279 (414)
Q Consensus 268 ---Viv~~NlfGDIL 279 (414)
||.++|-. |||
T Consensus 290 nvKVI~ATNR~-D~L 303 (406)
T COG1222 290 NVKVIMATNRP-DIL 303 (406)
T ss_pred CeEEEEecCCc-ccc
Confidence 99999987 444
No 59
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=29.41 E-value=1.2e+02 Score=24.04 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcC
Q 015002 190 SIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWK 238 (414)
Q Consensus 190 ~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp 238 (414)
-...+++.|+++|++++.+|.. ++.+-..++++- .+|.
T Consensus 39 ia~~L~~~~l~~a~~~~~kv~p---------~C~y~~~~~~~h--pey~ 76 (78)
T PF14542_consen 39 IAKKLVEAALDYARENGLKVVP---------TCSYVAKYFRRH--PEYQ 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEE---------TSHHHHHHHHH---GGGT
T ss_pred HHHHHHHHHHHHHHHCCCEEEE---------ECHHHHHHHHhC--cccc
Confidence 3678999999999999988765 567777766653 3455
No 60
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=27.42 E-value=2.3e+02 Score=26.41 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=52.2
Q ss_pred EEEECC-CCchHHHHHHHHHHHhcCCCceEEEEEe-c---Cch----hhhhcCCCCCHHH----HHHHHcCCeeeecccC
Q 015002 12 IVEMDG-DEMTRVFWKSIKDKLIFPFLELDIKYFD-L---GLP----NRDATDDKVTVES----AEATLKYNVAIKCATI 78 (414)
Q Consensus 12 I~vi~G-DGIGpEv~~~~~~v~~~~~~~i~~~~~~-~---G~~----~~~~~g~~lp~~~----~dai~~~~v~lkg~~~ 78 (414)
|...|= +|-...+.+++++-+.+.|.+++..... . ++. ++.+..+.+++|+ .+.++.+|++++|.
T Consensus 6 I~gs~r~~G~t~~l~~~~~~g~~~~G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~gs-- 83 (207)
T COG0655 6 INGSPRSNGNTAKLAEAVLEGAEEAGAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIFGS-- 83 (207)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHcCCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEEeC--
Confidence 444443 8888899999988777777777666543 2 222 2222226777655 45599999998864
Q ss_pred CCCchhHHHHHhhhcCCCcchhHhhhcCc
Q 015002 79 TPDEARVKEFVLKQMWKSPNGTIRNILNG 107 (414)
Q Consensus 79 tp~~~~~~e~~l~~~~~s~~~~LRk~ldl 107 (414)
|.. +.++..+|+.-+|-
T Consensus 84 -Pvy-----------~g~vsa~~K~fiDR 100 (207)
T COG0655 84 -PVY-----------FGNVSAQMKAFIDR 100 (207)
T ss_pred -Cee-----------cCCchHHHHHHHhh
Confidence 432 23445678888884
No 61
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=27.38 E-value=68 Score=25.95 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEe
Q 015002 188 DESIRAFAEASMNTAYQKKWPLYLST 213 (414)
Q Consensus 188 r~~~eRiar~AFe~A~~r~~~Vt~v~ 213 (414)
...+++.+++|+++|...+-+|+++|
T Consensus 12 ~~~~~~al~~a~~la~~~~~~i~~l~ 37 (140)
T PF00582_consen 12 SEESRRALRFALELAKRSGAEITLLH 37 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 35677999999999999877766654
No 62
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=26.97 E-value=65 Score=35.58 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=62.8
Q ss_pred ccCCccccccccc-cCCCcceeeeecCCCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEe
Q 015002 136 AFGDQYRATDTVI-QGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLST 213 (414)
Q Consensus 136 nteg~Y~g~e~~~-~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~ 213 (414)
..+|+|....... ...+++++.|+..+|... .+ .....-..+-.++ .++|.+..+.+.+..++.|++.+--..+=-
T Consensus 173 ~~gDFy~nEkS~t~~~~~~~~Ie~~~~~G~~~-vL-K~~~~l~~gEviDat~Ms~~aL~~F~~~~i~~AK~~~vLfSlHl 250 (735)
T PF03971_consen 173 SGGDFYGNEKSVTVDKATTVRIEFVGKDGSVT-VL-KEGLPLLAGEVIDATFMSAKALRAFYEEQIEDAKEEGVLFSLHL 250 (735)
T ss_dssp SSSSHHHH-EEEE-SSSEEEEEEEEETTS-EE-EE-EEEEEE-TT-EEEEEEE-HHHHHHHHHHHHHHHHHHT-EEEE-B
T ss_pred CCCCCCCCceEEEecCCCeEEEEEEcCCCCEE-ec-cCCCcCCCCcEeehhhccHHHHHHHHHHHHHHHHhcCCeEEeee
Confidence 3455555433222 346667778887776421 11 1011111233455 899999999999999999999775555556
Q ss_pred CCCcccccchH-HHH----HHHHHHHhhcCCccccCCeEEee
Q 015002 214 KNTILKKYDGR-FKD----IFQEVYEANWKSKFEAAGIWYEH 250 (414)
Q Consensus 214 KaNvl~~tdgl-f~~----~~~eva~~~yp~~~~~~~I~~~~ 250 (414)
|++-||.+|-. |-- -|.+|+ +.|.+.|+..+|..+.
T Consensus 251 KATMMKVSDPIiFGhaV~v~f~~vF-~k~~~~~~~~Gvn~nn 291 (735)
T PF03971_consen 251 KATMMKVSDPIIFGHAVKVFFKDVF-EKHGDTFKELGVNPNN 291 (735)
T ss_dssp -TTTSTTHHHHHHHHHHHHHCHHHH-HHCHHHHHHCT-SCCC
T ss_pred hhhhhhccCccHHHHHHHHHHHHHH-HHHHHHHHHcCCCccc
Confidence 99999999964 332 234454 3466666655665443
No 63
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.47 E-value=1.1e+02 Score=31.14 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEeeeeHHH
Q 015002 196 EASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDD 255 (414)
Q Consensus 196 r~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~~~~VDa 255 (414)
.||+|+|+ |+.+|.++. .|-.-...+..|+. +.|+ +++....+|-
T Consensus 64 ayA~eLAk-rG~nvvLIs------Rt~~KL~~v~kEI~-~~~~-------vev~~i~~Df 108 (312)
T KOG1014|consen 64 AYARELAK-RGFNVVLIS------RTQEKLEAVAKEIE-EKYK-------VEVRIIAIDF 108 (312)
T ss_pred HHHHHHHH-cCCEEEEEe------CCHHHHHHHHHHHH-HHhC-------cEEEEEEEec
Confidence 47899998 677787765 36677888888885 5675 5555555553
No 64
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=26.19 E-value=47 Score=33.67 Aligned_cols=19 Identities=16% Similarity=-0.036 Sum_probs=16.2
Q ss_pred ccEEEECCC--CchHHHHHHH
Q 015002 10 NPIVEMDGD--EMTRVFWKSI 28 (414)
Q Consensus 10 ~~I~vi~GD--GIGpEv~~~~ 28 (414)
.+|++-.|| ||||||+-.+
T Consensus 2 p~iaiT~GDpaGIGpEii~ka 22 (307)
T PRK03946 2 KKIAISIGDINGIGLEIALKS 22 (307)
T ss_pred CeEEEcCCCCcccHHHHHHHh
Confidence 478899999 9999998665
No 65
>PRK12861 malic enzyme; Reviewed
Probab=25.92 E-value=4e+02 Score=30.56 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHHHHHhCCC--CEEEEe---CCCcccccchHHHHHHHHHHHhhcCCccccCCeEEe-eeeHHHHHHHH
Q 015002 187 TDESIRAFAEASMNTAYQKKW--PLYLST---KNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAYA 260 (414)
Q Consensus 187 Tr~~~eRiar~AFe~A~~r~~--~Vt~v~---KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~~~~l 260 (414)
|-+....|+..|.++|+.-+. ||-+.. +.+.--.+....++..+-+ .+.+| ++.++ ++..|++.-.-
T Consensus 611 ~aeqla~Ia~~aa~~ak~lGiePkVAlLS~St~GS~~~~~~~km~eA~~l~-~~~~p------d~~vdGemq~DaAl~~e 683 (764)
T PRK12861 611 DAEQIAEFTIAAARQMEWLNLTPKVALLSRSNFGSGSAASGVKMRRALEIV-REQAP------DLEADGEMHGDCALDEG 683 (764)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCCCCchhHHHHHHHHH-HhhCC------CcEEEecCcHHHhCCHH
Confidence 556667778888888887654 565554 3222222334567776654 55788 66666 56677664332
Q ss_pred h---hCCCc-c-----EEEeCCc-chhhHhhhhhhhcCC
Q 015002 261 L---KSEGG-Y-----VWACKNY-DGDVQSDFLAQGFGS 289 (414)
Q Consensus 261 v---~~P~~-f-----Viv~~Nl-fGDILSDlaa~l~Gg 289 (414)
+ +-|.. + |+|+||+ =|+|+-.++-.+.|+
T Consensus 684 ~a~~K~p~s~vaG~ANVLVfPnLeAGNI~yKll~~l~g~ 722 (764)
T PRK12861 684 LRARLLPMSPLKGAANLLVCPNVDAGNIAYNLLKTEAGS 722 (764)
T ss_pred HHHhcCCCCcCCCcCCEEEECCcchhhHHHHHHHHHcCC
Confidence 2 23322 2 9999999 899999988887654
No 66
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=25.52 E-value=51 Score=33.76 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=14.3
Q ss_pred ccEEEECCC--CchHHHH
Q 015002 10 NPIVEMDGD--EMTRVFW 25 (414)
Q Consensus 10 ~~I~vi~GD--GIGpEv~ 25 (414)
.+|++-.|| ||||||+
T Consensus 4 ~~iAit~GDPaGIGPEi~ 21 (332)
T COG1995 4 PRIAITMGDPAGIGPELV 21 (332)
T ss_pred CceEecCCCcccCCHHHH
Confidence 588999999 9999993
No 67
>TIGR00651 pta phosphate acetyltransferase. Model contains a gene from E.coli coding for ethanolamine utilization protein (euti) and also contains similarity to malate oxidoreductases
Probab=25.14 E-value=3.6e+02 Score=27.19 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHHHHHhCC-C--CEEEE---eCCCcccccchHHHHHHHHHHHhhcCCccccCCeEEe-eeeHHHHHHH
Q 015002 187 TDESIRAFAEASMNTAYQKK-W--PLYLS---TKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYE-HRLIDDMVAY 259 (414)
Q Consensus 187 Tr~~~eRiar~AFe~A~~r~-~--~Vt~v---~KaNvl~~tdglf~~~~~eva~~~yp~~~~~~~I~~~-~~~VDa~~~~ 259 (414)
|-+..-.|+..|-++|+.-+ . ||-+. +|.|---.+.-.-++.+.-+ .+++| ++.++ ++.+|++.-.
T Consensus 157 ~~e~l~~ia~~a~~~a~~lg~~~PkVAlLs~S~~gs~~~~~~~kv~eA~~l~-~~~~~------~~~vdG~l~~D~Al~~ 229 (303)
T TIGR00651 157 NAEQLAEIAIQSAKSAKSFGEIEPKVALLSYSTKGSGSGEDVEKVREATRIA-KEKRP------DLTIDGELQFDAAFVE 229 (303)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCCCccHHHHHHHHHH-hccCC------CeEEEecCchhhhCCH
Confidence 55667778899999998765 2 55443 34443222334456666544 45788 66666 4556766422
Q ss_pred H---hhCCCc-c-----EEEeCCcc-hhhHhhhhhhhcCC
Q 015002 260 A---LKSEGG-Y-----VWACKNYD-GDVQSDFLAQGFGS 289 (414)
Q Consensus 260 l---v~~P~~-f-----Viv~~Nlf-GDILSDlaa~l~Gg 289 (414)
= .+-|.. + |+|+||++ |+|+--+.-.+.|+
T Consensus 230 ~~a~~K~~~s~v~G~AdvLV~Pnl~aGNi~~K~~~~~~~~ 269 (303)
T TIGR00651 230 KVAEKKAPNSPVAGSANVFVFPDLDAGNIGYKIVQRLGDA 269 (303)
T ss_pred HHHHhhCCCCccCCcCCEEEeCCchHHHHHHHHHHHhcCC
Confidence 1 233432 2 99999988 78877766665544
No 68
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=22.83 E-value=67 Score=32.77 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=15.4
Q ss_pred cEEEECCC--CchHHHHHHHH
Q 015002 11 PIVEMDGD--EMTRVFWKSIK 29 (414)
Q Consensus 11 ~I~vi~GD--GIGpEv~~~~~ 29 (414)
+|++-.|| ||||||+-.++
T Consensus 1 ~iaIT~GDp~GIGpEii~ka~ 21 (320)
T TIGR00557 1 RIAITLGDPAGIGPEIILKAL 21 (320)
T ss_pred CEEEecCCCcchHHHHHHHHH
Confidence 47788899 99999987664
No 69
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=21.82 E-value=1.1e+02 Score=25.09 Aligned_cols=27 Identities=11% Similarity=0.001 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCC
Q 015002 189 ESIRAFAEASMNTAYQKKWPLYLSTKN 215 (414)
Q Consensus 189 ~~~eRiar~AFe~A~~r~~~Vt~v~Ka 215 (414)
+.+++++++|+.+|++.+-+|+++|=.
T Consensus 10 ~~~~~~l~~a~~la~~~~~~v~ll~v~ 36 (132)
T cd01988 10 NTARDLLELAAALARAQNGEIIPLNVI 36 (132)
T ss_pred hhHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 468899999999999877777766643
Done!