BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015003
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 340 bits (872), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 184/368 (50%), Positives = 248/368 (67%), Gaps = 4/368 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
++V IV RTP+G FLGSLS + ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQAP RQA LGAG+P S CTTINKVC+SGMKA+M+A+QS+ G D++VAGGMESMSN
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 127
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + R + G + D ++KDGL DVYN MG CAE A K I R+EQD+YAI
Sbjct: 128 PYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPSF-KEGG 251
S+ R AA +G F E+ PV ++ +G+P ++V +DE ++ D +K+ KL+ F KE G
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENG 244
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKA 311
+VTA NAS ++DGAAALVL++ A L + +A+I FADAA P F AP A
Sbjct: 245 TVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMV 304
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILV 371
+ + GL+ I +E+NEAFS+V +AN K+L +DP++VN +GGAVSLGHP+G SGARI+
Sbjct: 305 LKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVG 364
Query: 372 TLLGVLRH 379
L L+
Sbjct: 365 HLTHALKQ 372
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 183/368 (49%), Positives = 247/368 (67%), Gaps = 4/368 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
++V IV RTP+G FLGSLS + ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 8 KEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGGE 67
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQAP RQA LGAG+P S CTTINKV +SGMKA+M+A+QS+ G D++VAGGMESMSN
Sbjct: 68 GQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNV 127
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + R + G + D ++KDGL DVYN MG CAE A K I R+EQD+YAI
Sbjct: 128 PYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 185
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPSF-KEGG 251
S+ R AA +G F E+ PV ++ +G+P ++V +DE ++ D +K+ KL+ F KE G
Sbjct: 186 SYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENG 244
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKA 311
+VTA NAS ++DGAAALVL++ A L + +A+I FADAA P F AP A
Sbjct: 245 TVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMV 304
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILV 371
+ + GL+ I +E+NEAFS+V +AN K+L +DP++VN +GGAVSLGHP+G SGARI+
Sbjct: 305 LKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVG 364
Query: 372 TLLGVLRH 379
L L+
Sbjct: 365 HLTHALKQ 372
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 335 bits (858), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 183/370 (49%), Positives = 247/370 (66%), Gaps = 4/370 (1%)
Query: 11 KARDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSA 70
+ +V IV RTP+G FLGSLS + ATKLGSIAI+ A+++A + V+E + GNVL
Sbjct: 17 RGSEVVIVSATRTPIGSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 76
Query: 71 NLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 130
GQAP RQA LGAG+P S CTTINKV +SGMKA+M+A+QS+ G D++VAGGMESMS
Sbjct: 77 GEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMS 136
Query: 131 NAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYA 190
N P + R + G + D ++KDGL DVYN MG CAE A K I R+EQD+YA
Sbjct: 137 NVPYVM--NRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYA 194
Query: 191 IRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPSF-KE 249
I S+ R AA +G F E+ PV ++ +G+P ++V +DE ++ D +K+ KL+ F KE
Sbjct: 195 INSYTRSKAAWEAGKFGNEVIPVTVTV-KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKE 253
Query: 250 GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIP 309
G+VTA NAS ++DGAAALVL++ A L + +A+I FADAA P F AP A
Sbjct: 254 NGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAAS 313
Query: 310 KAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 369
+ + GL+ I +E+NEAFS+V +AN K+L +DP++VN +GGAVSLGHP+G SGARI
Sbjct: 314 MVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARI 373
Query: 370 LVTLLGVLRH 379
+ L L+
Sbjct: 374 VGHLTHALKQ 383
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 318 bits (814), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 178/373 (47%), Positives = 241/373 (64%), Gaps = 8/373 (2%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+DV IV RTP+G F G + SA +LG+IA++ A+ R + + EV GNVL L
Sbjct: 5 KDVVIVSAVRTPIGSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ ARQ A+ AGIPNSV T+NK+C SG+K+V LAAQSI G ND+V+AGG E+MS A
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + AR GS++G+ T+VD ML DGL D +N + MG+ AE A K TR+ QD A+
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYHMGITAENIATKFEFTREMQDKLALE 184
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDE----GLEKFDAAKLMKLRPSFK 248
S + A + F EI PV++ RGK +DKDE G+ F+ L KL+P+FK
Sbjct: 185 SQNKAENAIKNNRFKEEIVPVDVLIRRGK-IETIDKDEYPKLGM-TFEG--LSKLKPAFK 240
Query: 249 EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAI 308
+ G+VTAGNAS I+DGAA L+L+S KA ELG++ +AKI+ +A A PE T P A
Sbjct: 241 KDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGTGPIPAT 300
Query: 309 PKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGAR 368
KA+ AGL + ID E NEAF+ A+A + L +D ++N +GGA++LGHP+G SGAR
Sbjct: 301 RKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGAR 360
Query: 369 ILVTLLGVLRHKK 381
ILVTL+ ++ +K
Sbjct: 361 ILVTLIYEMQKRK 373
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/369 (45%), Positives = 233/369 (63%), Gaps = 3/369 (0%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
R+V I ART +G F G+ SVSA +LG A + A+KRAN+ P ++ E G VL+A L
Sbjct: 7 REVVIASAARTAVGSFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ ARQ ALGAGIP TIN VC SG+++V +A+Q I LG DI++ GG E+MS +
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + AR G+R+G VD M+KDGL D++N++ MG+ AE A + ITR+EQD A+
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALA 186
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEK-FDAAKLMKLRPSFKEGG 251
S + AQ G F EI PV + +G +VDKDE ++ KL KLRP+FK+ G
Sbjct: 187 SQNKAEKAQAEGKFDEEIVPVVIKGRKGD--TVVDKDEYIKPGTTMEKLAKLRPAFKKDG 244
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKA 311
+VTAGNAS I+DGAA LV+++ KA ELG++ +A I + A P+ P A KA
Sbjct: 245 TVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKA 304
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILV 371
+ A + ID E NEAF+ ++A + L +D +VN +GGA+++GHP+GCSGARIL
Sbjct: 305 LEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGARILT 364
Query: 372 TLLGVLRHK 380
TLL ++ +
Sbjct: 365 TLLYEMKRR 373
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 170/368 (46%), Positives = 226/368 (61%), Gaps = 6/368 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
V IV ART +G F G+L++V LGS I+ LKRA V P V EV FG+VL+A GQ
Sbjct: 8 VVIVSAARTIIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAGCGQ 67
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
P RQA++GAGIP SV + + SG+KAV LA QSI +G + IVVAGGME+MS AP
Sbjct: 68 NPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSKAP- 126
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+LA R G ++G + D +L DGL D +++ MG+ AE A K ++R++QD A+ S
Sbjct: 127 HLAYLRTGVKIGEMPLTDSILCDGLTDAFHNCHMGITAENVAKKWQVSREDQDKVAVLSQ 186
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSF-KEG-G 251
R AQ +G F EI PV +S+ +G I V DE + M KL+P F +G G
Sbjct: 187 NRTENAQKAGHFDKEIVPVLVSTRKG--LIEVKTDEFPRHGSNIEAMSKLKPYFLTDGTG 244
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKA 311
+VT NAS I+DGAAA+VL+ +A + GL +A+I ++ P P AI +A
Sbjct: 245 TVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQA 304
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILV 371
+ AG +D +EINEAF+ V+ A K LGL+PE+VN GGA++LGHPLG SG RILV
Sbjct: 305 VTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILV 364
Query: 372 TLLGVLRH 379
TLL L
Sbjct: 365 TLLHTLER 372
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 120
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 181 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 238
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 298
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 299 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 358
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 359 LFEMKRR 365
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E +EAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E +EAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 262 bits (669), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A G
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGA 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G+P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/373 (40%), Positives = 220/373 (58%), Gaps = 12/373 (3%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+V I R+P+G F G+L +V+ +L ++ A+KR V+P V EV G+ +
Sbjct: 5 HNVVITAAVRSPIGTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
AR AAL AG P++V TI + SSGM+A+M AA IQLG++++VVAGG+E+MS++
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYND----FGMGVCAEICANKHTITRDEQDS 188
P L + R G RL H G ++D +W+V D MG AE ++ ITR+EQD
Sbjct: 125 PYALKQHRWGQRLQH-----GEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDE 179
Query: 189 YAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLE-KFDAAKLMKLRPSF 247
A+RS + A SG F +I P+ + R + ++ KDE A KL L+P+F
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIKERRKE--VVFSKDEHPRADITAEKLAGLKPAF 237
Query: 248 KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLA 307
++ GSVTAGNAS ++DG+A LVL+S KA E GLQ +A+I G++ A P+ P+ A
Sbjct: 238 RKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPA 297
Query: 308 IPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGA 367
I K + D EINEAF+ +A +K L LD E+VN +G V LGHP+GC+GA
Sbjct: 298 IRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGA 357
Query: 368 RILVTLLGVLRHK 380
RI V+L+ L+ +
Sbjct: 358 RITVSLIHELKRR 370
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 2 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 61
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 62 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 120
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 181 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 238
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 239 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 298
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 299 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 358
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 359 LFEMKRR 365
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 261 bits (666), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 260 bits (665), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 259 bits (663), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 216/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E +EAF+ A A K LG DP VN +GGA+++G+P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 257 bits (657), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G+P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 214/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 214/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E NEAF+ A A K LG DP VN +GGA+++G P+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 251 bits (642), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 156/367 (42%), Positives = 215/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++C SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E EAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 247 bits (631), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 155/367 (42%), Positives = 214/367 (58%), Gaps = 4/367 (1%)
Query: 15 VCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLGQ 74
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A GQ
Sbjct: 5 IVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEGQ 64
Query: 75 APARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPK 134
PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS AP
Sbjct: 65 NPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP- 123
Query: 135 YLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSF 194
+ A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+ S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 195 KRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLM-KLRPSFKEGGSV 253
+ AAQ G F EI P + +G I VD DE + M KLRP+F + G+V
Sbjct: 184 NKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEGTV 241
Query: 254 TAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIA 313
TAGNAS ++DGAAA +L+S +A G+Q + +I +A P+ T P A KA+
Sbjct: 242 TAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASRKALE 301
Query: 314 NAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTL 373
AG + +D E EAF+ A A K LG DP VN +GGA+++GHP+G SGARIL TL
Sbjct: 302 RAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTL 361
Query: 374 LGVLRHK 380
L ++ +
Sbjct: 362 LFEMKRR 368
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/377 (37%), Positives = 213/377 (56%), Gaps = 11/377 (2%)
Query: 14 DVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL- 72
+ IV RTP+G G+L+SV L + A+ + R+ V V++V+ G A
Sbjct: 3 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 62
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
+ AR A L AG P V T+N++C SG++AV AA++I G + + G+ESMS A
Sbjct: 63 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 122
Query: 133 PKYLAEARKGSRLGHDTIVDGML-----KDGLWDVYNDFGMGVCAEICANKHTITRDEQD 187
P + + +G G+ + D L + +Y MG AE A + I R+EQD
Sbjct: 123 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 182
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDA-AKLMKLRPS 246
+A+ S ++ + A G F E+ PV + RGK I+V++DEG + + KL LRP
Sbjct: 183 RFALLSHQKAVRAWEEGRFQDEVVPVPVK--RGKEEILVEQDEGPRRDTSLEKLAALRPV 240
Query: 247 FKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPSL 306
F+EGG+VTAGN+S ++DGAAA++LVS A GL+ +A++R A A P P
Sbjct: 241 FREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVPPRIMGIGPVP 300
Query: 307 AIPKAIANAGLEASQIDYYEINEAFSVVAIA--NQKLLGLDPEQVNAHGGAVSLGHPLGC 364
A KA+ AGL S + E+NEAF+ A+A + L ++ +++N +GGA++LGHPLG
Sbjct: 301 ATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGA 360
Query: 365 SGARILVTLLGVLRHKK 381
SGARIL TL+ +R +K
Sbjct: 361 SGARILTTLVHEMRRRK 377
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 147/378 (38%), Positives = 211/378 (55%), Gaps = 24/378 (6%)
Query: 12 ARDVCIVGVARTPM-----GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGN 66
A DV +V RT + GGF + +L S + LK N++P + ++ GN
Sbjct: 29 AADVVVVHGRRTAICRAGRGGF----KDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGN 84
Query: 67 VLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGM 126
VL G AR A + IP +V +T+N+ CSSG++AV A I+ G DI +A G+
Sbjct: 85 VLQPGAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGV 144
Query: 127 ESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
ESMS A + SRL M K+ D MG+ +E A + I+R++Q
Sbjct: 145 ESMSLADRG-NPGNITSRL--------MEKEKARDCL--IPMGITSENVAERFGISREKQ 193
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAPVEMS--SGRG-KPFIIVDKDEGLEKFDAAK-LMK 242
D++A+ S ++ AQ+ G F EI PV + +G K I V +DEG+ + L K
Sbjct: 194 DTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDKGTKRSITVTQDEGIRPSTTMEGLAK 253
Query: 243 LRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTT 302
L+P+FK+ GS TAGN+S +SDGAAA++L KA ELGL ++ +R +A P+
Sbjct: 254 LKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGI 313
Query: 303 APSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPL 362
P+ AIP A+ AGL S +D +EINEAF+ A + L L PE+VN GGAV+LGHPL
Sbjct: 314 GPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPL 373
Query: 363 GCSGARILVTLLGVLRHK 380
GC+GAR ++TLL L+ +
Sbjct: 374 GCTGARQVITLLNELKRR 391
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 205/380 (53%), Gaps = 20/380 (5%)
Query: 9 SIKARDVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNV 67
S+ DV IV RTP+ G+ L + + +++ N+ P V ++ G V
Sbjct: 26 SLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTV 85
Query: 68 LSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGM 126
L+ +A R AA AG P +V T+N+ CSSG++AV A +I+ G DI + G+
Sbjct: 86 LAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 145
Query: 127 ESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
ESM+ P A +GS V+ +K MGV +E A + ++R EQ
Sbjct: 146 ESMTTNPM----AWEGS-------VNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQ 194
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAPVEMS-----SGRGKPFIIVDKDEGLEKFDA-AKL 240
D A+ S ++ AA +G F EI PV+ +G KP I V D+G+ A L
Sbjct: 195 DQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKP-ITVSVDDGIRPTTTLASL 253
Query: 241 MKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWF 300
KL+P FK+ G+ TAGN+S +SDGA A++L+ A++ GL V+ R FA P
Sbjct: 254 GKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIM 313
Query: 301 TTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGH 360
P++AIP A+ AGLE ID +EINEAF+ + + LGLDPE++N +GGA+++GH
Sbjct: 314 GIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGH 373
Query: 361 PLGCSGARILVTLLGVLRHK 380
PLG +GAR + TLL ++ +
Sbjct: 374 PLGATGARCVATLLHEMKRR 393
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/380 (35%), Positives = 208/380 (54%), Gaps = 20/380 (5%)
Query: 9 SIKARDVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNV 67
S+ DV IV R+P+ G L + + ++ +++ N+ P V ++ G+V
Sbjct: 29 SVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIVVGSV 88
Query: 68 LSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGM 126
L A +A R AA AG P +V T+N+ CSSG++AV A +I+ G DI + G+
Sbjct: 89 LGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 148
Query: 127 ESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
ESM+ P A +GS + +D L MG+ +E A K +ITR EQ
Sbjct: 149 ESMTANPM----AWEGS-VNPKVKTMAQAQDCL------LPMGITSENVAQKFSITRQEQ 197
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAP-----VEMSSGRGKPFIIVDKDEGLEKFDA-AKL 240
D A+ S ++ AA +G F EI P V+ +G KP + + D+G+ + A L
Sbjct: 198 DQAAVGSHRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKP-VTISVDDGIRPGTSLADL 256
Query: 241 MKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWF 300
KL+P F++ GS TAG +S +SDGA A++L+ AL+ GL ++ R FA P
Sbjct: 257 AKLKPVFRKDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIM 316
Query: 301 TTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGH 360
P++AIP A+ AGL+ ID +EINEAF+ + QK L +DP+++N +GGA+++GH
Sbjct: 317 GIGPAVAIPAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGH 376
Query: 361 PLGCSGARILVTLLGVLRHK 380
PLG +GAR + TLL ++ +
Sbjct: 377 PLGATGARCVATLLHEMKRR 396
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 203 bits (517), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/380 (36%), Positives = 205/380 (53%), Gaps = 20/380 (5%)
Query: 9 SIKARDVCIVGVARTPM-GGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNV 67
S+ DV IV RTP+ G+ L + + +++ N+ P V ++ G V
Sbjct: 9 SLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIVVGTV 68
Query: 68 LSANLGQAP-ARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGM 126
L+ +A R AA AG P +V T+N+ CSSG++AV A +I+ G DI + G+
Sbjct: 69 LAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 128
Query: 127 ESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQ 186
ESM+ P A +GS V+ +K MGV +E A + ++R EQ
Sbjct: 129 ESMTTNPM----AWEGS-------VNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQ 177
Query: 187 DSYAIRSFKRGIAAQNSGLFAWEIAPVEMS-----SGRGKPFIIVDKDEGLEKFDA-AKL 240
D A+ S ++ AA +G F EI PV+ +G KP I V D+G+ A L
Sbjct: 178 DQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKP-ITVSVDDGIRPTTTLASL 236
Query: 241 MKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWF 300
KL+P FK+ G+ TAGN+S +SDGA A++L+ A++ GL V+ R FA P
Sbjct: 237 GKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIM 296
Query: 301 TTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGH 360
P++AIP A+ AGLE ID +EINEAF+ + + LGLDPE++N +GGA+++GH
Sbjct: 297 GIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGH 356
Query: 361 PLGCSGARILVTLLGVLRHK 380
PLG +GAR + TLL ++ +
Sbjct: 357 PLGATGARCVATLLHEMKRR 376
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 208/384 (54%), Gaps = 30/384 (7%)
Query: 9 SIKARDVCIVGVARTPMGGFLGSLS-SVSATKLGSIAIECALKR-ANVKPLLVQEVFFGN 66
S+ RDV IV RTPMG G + + A + + I L+R + V P V++V +G
Sbjct: 1 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGC 60
Query: 67 V-LSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
V + G AR A+L IP++ T++++C S M A+ AAQ+I G D+ V GG
Sbjct: 61 VNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFG---MGVCAEICANKHTIT 182
+E M GH +++ G+ + +Y MG+ AE+ H I+
Sbjct: 121 VEHM----------------GHVSMMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGIS 164
Query: 183 RDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFI-IVDKDEGLEKFDAAK-L 240
R++QD++A+RS + A G F EI P++ G F+ I D DE + + L
Sbjct: 165 REQQDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENG--FLKIFDYDETIRPDTTLESL 222
Query: 241 MKLRPSFK-EGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEW 299
L+P+F +GG+VTAG +S I+DGA+ ++++S +A +LGL+ +A IR A A P
Sbjct: 223 AALKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAI 282
Query: 300 FTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVA---IANQKLLGLDPEQVNAHGGAV 356
P A KA+ AGL + ID+ E+NEAF+ A + + K+L E+VN HGGA+
Sbjct: 283 MGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAI 342
Query: 357 SLGHPLGCSGARILVTLLGVLRHK 380
+LGHP GCSGARI TLL V++
Sbjct: 343 ALGHPFGCSGARISGTLLNVMKQN 366
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 194 bits (493), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 197/386 (51%), Gaps = 36/386 (9%)
Query: 11 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPL-----LVQEVFF 64
+ DV IV R+ +G GF G+ V+ L + + R +PL L++EV
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRF-PEPLRADLNLIEEVAC 66
Query: 65 GNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAG 124
GNVL+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A
Sbjct: 67 GNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLAL 126
Query: 125 GMESMSNAPKYL-------AEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICAN 177
G+ESM+N K + +E + +R ++ MG+ E A
Sbjct: 127 GVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP---------------MGITNENVAA 171
Query: 178 KHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLE-KFD 236
I+R +QD +A S+++ A+N GLF EI P+++ G I DEG
Sbjct: 172 NFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVT 226
Query: 237 AAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQ 295
A L +RP+F K+ G+ TAGNAS +SDG A ++L A +L L V+ + F
Sbjct: 227 AESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGV 286
Query: 296 APEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGA 355
PE P+ AIPK + GL+ ID +EINEAF+ A+ LG+D +VN GGA
Sbjct: 287 PPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGA 346
Query: 356 VSLGHPLGCSGARILVTLLGVLRHKK 381
++LGHPLGC+GAR + T+L L+ +
Sbjct: 347 IALGHPLGCTGARQVATILRELKKDQ 372
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 194 bits (492), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 135/386 (34%), Positives = 197/386 (51%), Gaps = 36/386 (9%)
Query: 11 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRANVKPL-----LVQEVFF 64
+ DV IV R+ +G GF G+ V+ L + + R +PL L++EV
Sbjct: 5 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRF-PEPLRADLNLIEEVAC 63
Query: 65 GNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAG 124
GNVL+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A
Sbjct: 64 GNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLAL 123
Query: 125 GMESMSNAPKYL-------AEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICAN 177
G+ESM+N K + +E + +R ++ MG+ E A
Sbjct: 124 GVESMTNNYKNVNPLGMISSEELQKNREAKKCLIP---------------MGITNENVAA 168
Query: 178 KHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLE-KFD 236
I+R +QD +A S+++ A+N GLF EI P+++ G I DEG
Sbjct: 169 NFKISRKDQDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVT 223
Query: 237 AAKLMKLRPSF-KEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQ 295
A L +RP+F K+ G+ TAGNAS +SDG A ++L A +L L V+ + F
Sbjct: 224 AESLSSIRPAFIKDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGV 283
Query: 296 APEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGA 355
PE P+ AIPK + GL+ ID +EINEAF+ A+ LG+D +VN GGA
Sbjct: 284 PPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGA 343
Query: 356 VSLGHPLGCSGARILVTLLGVLRHKK 381
++LGHPLGC+GAR + T+L L+ +
Sbjct: 344 IALGHPLGCTGARQVATILRELKKDQ 369
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 161 bits (407), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 137/378 (36%), Positives = 187/378 (49%), Gaps = 30/378 (7%)
Query: 15 VCIVGVARTPMGGFLG-SLSSVSATKLGSIAIECALKR-ANVKPLLVQEVFFGNVLSA-N 71
V IV RTP G G + +V A L + L R ++ + ++++G V
Sbjct: 4 VVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQTLE 63
Query: 72 LGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
G AR AAL A IP+SV T+N++C S +A+ AA+ I G + + GG+E +
Sbjct: 64 QGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHXGH 123
Query: 132 APKYLAEARKGSRLGHDTIVDGMLKDGL-WDVYNDFG-MGVCAEICANKHTITRDEQDSY 189
P VD GL +V G G+ AE + H I+R+ QD +
Sbjct: 124 VPXSHG-------------VD--FHPGLSRNVAKAAGXXGLTAEXLSRLHGISREXQDQF 168
Query: 190 AIRSFKRGIAAQNSGLFAWEIAPVEMSSGRG--KPFIIVDKDEGLE-KFDAAKLMKLRPS 246
A RS R AA SG F EI P G K F + DE + + L LRP+
Sbjct: 169 AARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQF---NYDEVIRPETTVEALSTLRPA 225
Query: 247 FKE-GGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS 305
F G+VTAG +S +SDGAAA ++ S +A ELGL+ A+IR A P P
Sbjct: 226 FDPVSGTVTAGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPV 285
Query: 306 LAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDP---EQVNAHGGAVSLGHPL 362
A A+ AGL AS ID +E NEAF+ + K LGL E++N +GGA++LGHPL
Sbjct: 286 PASKLALKKAGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPL 345
Query: 363 GCSGARILVTLLGVLRHK 380
GCSGARI TL+ + K
Sbjct: 346 GCSGARISTTLINLXERK 363
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 129/393 (32%), Positives = 190/393 (48%), Gaps = 57/393 (14%)
Query: 22 RTPMGGFL-GSLSSVSATKLG-SIAIECALKRANVKPLLVQEVFFGNVLS-ANLGQAPAR 78
RTP G GSL+ V L + E + ++ L+ ++ G V + G AR
Sbjct: 16 RTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVGDQGGDIAR 75
Query: 79 QAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAE 138
A L AG+P + +N+ C+SG++AV AAQ ++ G +D+V+AGG+ESMS P
Sbjct: 76 TAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMSRVP----- 130
Query: 139 ARKGSRLGHDTIVDGMLKDGLW--DVYNDFGMG-----VCAEICANKHTITRDEQDSYAI 191
+G D G W D ++ +G + A++ A +R++ D+YA+
Sbjct: 131 ------MGSDG--------GAWATDPETNYRIGFVPQGIGADLIATLEGFSREDVDAYAL 176
Query: 192 RSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDE---------GLEK-------- 234
RS ++ AA + G FA + PV +G +I+D DE GL K
Sbjct: 177 RSQQKAAAAWSGGYFAKSVVPVRDQNG----LVILDHDEHMRPDTTMEGLAKLKTAFDGV 232
Query: 235 -----FDAAKLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKA-LELGLQVIAKIR 288
FD L K K T GN+S I DGAA LVLV KA GL A+I
Sbjct: 233 GEMGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAA-LVLVGSEKAGKSQGLTPRARIV 291
Query: 289 GFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQ 348
A + P T P+ A K + AGL ID +E+NEAF+ V + QK L + E+
Sbjct: 292 ATATSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEK 351
Query: 349 VNAHGGAVSLGHPLGCSGARILVTLLGVLRHKK 381
+N +GGA+++GHPLG +GA I T++ L +
Sbjct: 352 LNVNGGAIAMGHPLGATGAMITGTMVDELERRN 384
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
VC +IN CSS A+ A +SI+ G D+++ GG E+
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 257 NASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-----LAIPKA 311
N ++ +G+ LVL S A + G ++A++ G+ + A + P AI A
Sbjct: 246 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 305
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQK-----LLGLDPEQVNAHGGAVSLGHPLGCSG 366
+ A + Q+ Y A AN+K ++ + ++V GH LG +G
Sbjct: 306 LEEAEISPEQVAYVN---AHGTSTPANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAG 362
Query: 367 ARILVTLLGVLRHK 380
A + + +RH
Sbjct: 363 AVEAIVTIEAMRHN 376
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
VC +IN CSS A+ A +SI+ G D+++ GG E+
Sbjct: 176 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 213
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 13/134 (9%)
Query: 257 NASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-----LAIPKA 311
N ++ +G+ LVL S A + G ++A++ G+ + A + P AI A
Sbjct: 247 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 306
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQK-----LLGLDPEQVNAHGGAVSLGHPLGCSG 366
+ A + Q+ Y +N A + AN+K ++ + ++V GH LG +G
Sbjct: 307 LEEAEISPEQVAY--VNAAGTSTP-ANEKGESGAIVAVLGKEVPVSSTKSFTGHLLGAAG 363
Query: 367 ARILVTLLGVLRHK 380
A + + +RH
Sbjct: 364 AVEAIVTIEAMRHN 377
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
VC +IN CSS A+ A +SI+ G D+++ GG E+
Sbjct: 175 VCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEA 212
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 17/136 (12%)
Query: 257 NASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-----LAIPKA 311
N ++ +G+ LVL S A + G ++A++ G+ + A + P AI A
Sbjct: 246 NGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLA 305
Query: 312 IANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSL-------GHPLGC 364
+ A + Q+ Y A AN+K G V G AV + GH LG
Sbjct: 306 LEEAEISPEQVAYVN---AHGTSTPANEK--GESGAIVAVLGKAVPVSSTKSFTGHLLGA 360
Query: 365 SGARILVTLLGVLRHK 380
+GA + + +RH
Sbjct: 361 AGAVEAIVTIEAMRHN 376
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-----SLAIPKAIAN 314
++ +GA LVL + A + G ++ A++ GF +A A P +LA+ +A+ +
Sbjct: 228 VMGEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKD 287
Query: 315 AGLEASQIDYYEINEAFSVVA-----IANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 369
AG+ Q+ Y + + V +A +++ G +++ +GH LG +GA
Sbjct: 288 AGIAPEQVGYINAHGTSTPVGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVE 347
Query: 370 LVTLLGVLRH 379
+ + L H
Sbjct: 348 AIATVQALYH 357
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 63 FFGNVLSANLGQAPARQAALGAGI--PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDI 120
FF ++ AN+ A A+ G P+S V T C++G A+ A + IQLG D+
Sbjct: 130 FFIPMMIANMASA---HIAMRYGFTGPSSTVVTA----CATGADALGSALRMIQLGEADL 182
Query: 121 VVAGGMES 128
V+AGG E+
Sbjct: 183 VLAGGTEA 190
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
PN V T CS+G A+ AA+ I LG D+++AGG ES N
Sbjct: 166 PNHSVVT----ACSTGAHAIGDAARLIALGDADVMLAGGTESPIN 206
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 13/114 (11%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-------LAIPKAI 312
++ +GAA +VL A + G ++ A+I G+ + A + TAPS ++ A+
Sbjct: 242 VMGEGAAIVVLEELEHAKKRGARIYAEIIGYGLSGDA--YHITAPSESGEGAQRSMMAAL 299
Query: 313 ANAGLEASQIDYYEINEAFSVVAI----ANQKLLGLDPEQVNAHGGAVSLGHPL 362
A + S++DY + ++ + A +++LG QV+ S+GH L
Sbjct: 300 KRAQVNVSELDYINAHGTSTMADVIELAAVERVLGYYAPQVSMSSTKSSIGHLL 353
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 87 PNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMES 128
PN V T C++G A+ AA+ I G D++VAGG ES
Sbjct: 170 PNHSVVT----ACATGTHAIGDAARLIAFGDADVMVAGGTES 207
>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
Length = 332
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 233 EKFDAAKLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFAD 292
EK DAA+ ++ F + G I++ + AL+ G LG+ + FA
Sbjct: 67 EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFAT 126
Query: 293 AAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIAN----QKLLGLDPEQ 348
+ PE A LAI AG +A ID ++N+ + +A ++ PE+
Sbjct: 127 SVGIPEALDKALKLAI------AG-DAIAIDMAQVNKQTCFINMATGGFGTRITTETPEK 179
Query: 349 VNAHGGAVS 357
+ A G+VS
Sbjct: 180 LKAALGSVS 188
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 94 TINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKGSRLGHD 148
T++ CSSG+ A+ LA +S++ + +AGG+ ++ ++P E R L D
Sbjct: 194 TVDTACSSGLTALHLAXESLRRDECGLALAGGV-TVXSSPGAFTEFRSQGGLAAD 247
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 261 ISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS-----LAIPKAIANA 315
+++GA LVL A G V+A +RG A TAPS I +A+ NA
Sbjct: 262 LAEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 316 GLEASQIDYYEIN 328
G+ A +DY E +
Sbjct: 322 GVRAGDVDYVEAH 334
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 14/120 (11%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-------SLAIPKAI 312
++ DGA LVL A + G ++ A++ GF ++ A + T+P +LA+ A+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANAL 302
Query: 313 ANAGLEASQIDYYEINEAFS-----VVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGA 367
+AG+EASQI Y + + A A + + G +V A GH LG +GA
Sbjct: 303 RDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTASMTGHLLGAAGA 362
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 94 TINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
+I C+SG+ + AA+ I G D++VAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 47 CALKRANVKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAV 106
C + + P + ++ N+ S ++ Q PN T C++G ++
Sbjct: 138 CEKRLRRLSPFFIPKILV-NMASGHVSMKYGFQG------PNHAAVT----ACATGAHSI 186
Query: 107 MLAAQSIQLGINDIVVAGGMESMSNA 132
A + IQ G D++VAGG ES +A
Sbjct: 187 GDATRMIQFGDADVMVAGGTESSIDA 212
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAPS------LAIPKAIA 313
+I +G+ +VL A G ++ A++ G+ + A T P LA+ +A+
Sbjct: 247 VIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDA-HHITQPPEDGKGAVLAMTRALR 305
Query: 314 NAGLEASQIDY 324
+GL +QIDY
Sbjct: 306 QSGLCPNQIDY 316
>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
Length = 299
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 11/129 (8%)
Query: 233 EKFDAAKLMKLRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFAD 292
EK DAA+ ++ F + G I++ + AL+ G LG+ + FA
Sbjct: 42 EKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFAT 101
Query: 293 AAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIAN----QKLLGLDPEQ 348
+ PE A LAI AG +A ID ++N+ + A ++ PE+
Sbjct: 102 SVGIPEALDKALKLAI------AG-DAIAIDXAQVNKQTCFINXATGGFGTRITTETPEK 154
Query: 349 VNAHGGAVS 357
+ A G+VS
Sbjct: 155 LKAALGSVS 163
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 54 VKPLLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSI 113
V PL VQ+ + N +A +G R A G P S C+SG +A+ A Q I
Sbjct: 153 VSPLTVQK-YMPNGAAAAVGLE--RHAKAGVMTPVSA--------CASGAEAIARAWQQI 201
Query: 114 QLGINDIVVAGGMES 128
LG D + GG+E+
Sbjct: 202 VLGEADAAICGGVET 216
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 155 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 193
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 167 VNYSISSACATSAHCIGNAVEQIQLGKQDIVFAGGGEEL 205
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-------SLAIPKAI 312
++ DGA LVL A + G ++ A++ GF ++ A + T+P +LA+ A+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANAL 302
Query: 313 ANAGLEASQIDY 324
+AG+EASQI Y
Sbjct: 303 RDAGIEASQIGY 314
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-------SLAIPKAI 312
++ DGA LVL A + G ++ A++ GF ++ A + T+P +LA+ A+
Sbjct: 230 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANAL 287
Query: 313 ANAGLEASQIDY 324
+AG+EASQI Y
Sbjct: 288 RDAGIEASQIGY 299
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 94 TINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
+I C+SG+ + AA+ I G D++VAGG E S
Sbjct: 158 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 195
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-------SLAIPKAI 312
++ DGA LVL A + G ++ A++ GF ++ A + T+P +LA+ A+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANAL 302
Query: 313 ANAGLEASQIDY 324
+AG+EASQI Y
Sbjct: 303 RDAGIEASQIGY 314
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 94 TINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
+I C+SG+ + AA+ I G D++VAGG E S
Sbjct: 173 SIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKAST 210
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTTAP-------SLAIPKAI 312
++ DGA LVL A + G ++ A++ GF ++ A + T+P +LA+ A+
Sbjct: 245 VLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDA--YHMTSPPENGAGAALAMANAL 302
Query: 313 ANAGLEASQIDY 324
+AG+EASQI Y
Sbjct: 303 RDAGIEASQIGY 314
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 91 VCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESM 129
V +I+ C++ + A + IQLG DIV AGG E +
Sbjct: 159 VNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEEL 197
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 243 LRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTT 302
L ++KE G+ A ++ DG ++SG E+ ++ IR + + +A + T
Sbjct: 402 LNAAYKEIGNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTP 461
Query: 303 APSLAIPKAIANAGL 317
+AI +A+AN +
Sbjct: 462 QVHVAISQALANFSI 476
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 243 LRPSFKEGGSVTAGNASIISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQAPEWFTT 302
L ++KE G+ A ++ DG ++SG E+ ++ IR + + +A + T
Sbjct: 387 LNAAYKEIGNPPKYYAILVMDGDDMGKVISGEVLGEISTRIHPNIRDYVEIPEAKYYSTP 446
Query: 303 APSLAIPKAIANAGL 317
+AI +A+AN +
Sbjct: 447 QVHVAISQALANFSI 461
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 96 NKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMS 130
+ C+SG +A+ A ++I +G +++AGG E +S
Sbjct: 165 SSACASGSQAIGYAYENIAMGKQTLMLAGGAEELS 199
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 265 AAALVLVSGVKALELGLQVIAKIRGFADAAQAPE-WFTTAPSLAIPKAIANAGLEASQI 322
AAA + V+ EL LQ ++ +R FAD + A +A+P A+ G E SQI
Sbjct: 55 AAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINNAGIMAVPYALTVDGFE-SQI 112
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 99 CSSGMKAVMLAAQSIQLGINDIVVAGGME 127
CSSG +A+ A + I +G D+ V GG+E
Sbjct: 171 CSSGSEAIAHAWRQIVMGDADVAVCGGVE 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,857,244
Number of Sequences: 62578
Number of extensions: 426049
Number of successful extensions: 1372
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 94
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)