RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015003
(414 letters)
>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
[TaxId: 350]}
Length = 268
Score = 239 bits (612), Expect = 8e-78
Identities = 113/269 (42%), Positives = 156/269 (57%), Gaps = 4/269 (1%)
Query: 13 RDVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANL 72
+ I ART +G F G+ ++ A +LG+ I L+RA V V EV G VL A
Sbjct: 3 PSIVIASAARTAVGSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGE 62
Query: 73 GQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
GQ PARQAA+ AG+P +N++ SG++AV L Q I G I+VAGGMESMS A
Sbjct: 63 GQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMA 122
Query: 133 PKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIR 192
P + A R G ++G ++D M+KDGL D + + MG AE A + ++RDEQD++A+
Sbjct: 123 P-HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181
Query: 193 SFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLRPSFKEGG 251
S + AAQ G F EI P + +G I VD DE + + KLRP+F + G
Sbjct: 182 SQNKAEAAQKDGRFKDEIVPFIVKGRKGD--ITVDADEYIRHGATLDSMAKLRPAFDKEG 239
Query: 252 SVTAGNASIISDGAAALVLVSGVKALELG 280
+VTAGNAS ++DGAAA +L+S +A G
Sbjct: 240 TVTAGNASGLNDGAAAALLMSEAEASRRG 268
>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 273
Score = 207 bits (527), Expect = 5e-65
Identities = 98/275 (35%), Positives = 148/275 (53%), Gaps = 9/275 (3%)
Query: 14 DVCIVGVARTPMGGFLGSLSSVSATKLGSIAIECALKRANVKPLLVQEVFFGNVLSANLG 73
+ IV RTP+G G+L+SV L + A+ + R+ V V++V+ G A
Sbjct: 1 EAWIVEAVRTPIGKHGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGED 60
Query: 74 QA-PARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNA 132
AR A L AG P V T+N++C SG++AV AA++I G + + G+ESMS A
Sbjct: 61 NRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSRA 120
Query: 133 PKYLAEARKGSRLGHDTIVDG-----MLKDGLWDVYNDFGMGVCAEICANKHTITRDEQD 187
P + + +G G+ + D + + +Y MG AE A + I R+EQD
Sbjct: 121 PYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQD 180
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKF-DAAKLMKLRPS 246
+A+ S ++ + A G F E+ PV + G+ I+V++DEG + KL LRP
Sbjct: 181 RFALLSHQKAVRAWEEGRFQDEVVPVPVKRGKE--EILVEQDEGPRRDTSLEKLAALRPV 238
Query: 247 FKEGGSVTAGNASIISDGAAALVLVSGVKALELGL 281
F+EGG+VTAGN+S ++DGAAA++LVS A GL
Sbjct: 239 FREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273
>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 269
Score = 160 bits (406), Expect = 3e-47
Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 11 KARDVCIVGVARTPMG-GFLGSLSSVSATKLGSIAIECALKRA----NVKPLLVQEVFFG 65
+ DV IV R+ +G GF G+ V+ L + + R L++EV G
Sbjct: 8 RPEDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACG 67
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
NVL+ G R A L +GIP S +N+ CSSG+ AV A I++G DI +A G
Sbjct: 68 NVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALG 127
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+ESM+N K + I L+ MG+ E A I+R +
Sbjct: 128 VESMTNNYKNVNP--------LGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKD 179
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGL-EKFDAAKLMKLR 244
QD +A S+++ A+N GLF EI P+++ G I DEG A L +R
Sbjct: 180 QDEFAANSYQKAYKAKNEGLFEDEILPIKLPDGS-----ICQSDEGPRPNVTAESLSSIR 234
Query: 245 PSF-KEGGSVTAGNASIISDGAAALVLVSGVKA 276
P+F K+ G+ TAGNAS +SDG A ++L A
Sbjct: 235 PAFIKDRGTTTAGNASQVSDGVAGVLLARRSVA 267
>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 262
Score = 156 bits (395), Expect = 1e-45
Identities = 84/275 (30%), Positives = 132/275 (48%), Gaps = 17/275 (6%)
Query: 9 SIKARDVCIVGVARTPMGGFLGSLSS-VSATKLGSIAIECALKR-ANVKPLLVQEV-FFG 65
S+ RDV IV RTPMG G + A + + I L+R + V P V++V +
Sbjct: 1 SLNPRDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGC 60
Query: 66 NVLSANLGQAPARQAALGAGIPNSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGG 125
+ G AR A+L IP++ T++++C S M A+ AAQ+I G D+ V GG
Sbjct: 61 VNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGG 120
Query: 126 MESMSNAPKYLAEARKGSRLGHDTIVDGMLKDGLWDVYNDFGMGVCAEICANKHTITRDE 185
+E M + VD L+ MG+ AE+ H I+R++
Sbjct: 121 VEHMGHVS-------------MMHGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQ 167
Query: 186 QDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRP 245
QD++A+RS + A G F EI P++ G I + L L+P
Sbjct: 168 QDAFAVRSHQLAHKATVEGKFKDEIIPMQGYDENGFLKIFDYDETIRPDTTLESLAALKP 227
Query: 246 SFK-EGGSVTAGNASIISDGAAALVLVSGVKALEL 279
+F +GG+VTAG +S I+DGA+ ++++S +A +L
Sbjct: 228 AFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDL 262
>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
ramigera [TaxId: 350]}
Length = 124
Score = 127 bits (320), Expect = 2e-36
Identities = 49/122 (40%), Positives = 71/122 (58%)
Query: 281 LQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQK 340
+Q + +I +A P+ T P A KA+ AG + +D E NEAF+ A A K
Sbjct: 1 IQPLGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNK 60
Query: 341 LLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHKKGKYGVGGICNGGGGASALV 400
LG DP VN +GGA+++GHP+G SGARIL TLL ++ + + G+ +C GGG A+
Sbjct: 61 DLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRGARKGLATLCIGGGMGVAMC 120
Query: 401 LE 402
+E
Sbjct: 121 IE 122
>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 124
Score = 113 bits (284), Expect = 4e-31
Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 279 LGLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIAN 338
L L V+ + F PE P+ AIPK + GL+ ID +EINEAF+ A+
Sbjct: 1 LNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYC 60
Query: 339 QKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHKKGKYGVGGICNGGGGASA 398
LG+D +VN GGA++LGHPLGC+GAR + T+L L+ K + GV +C G G +A
Sbjct: 61 IHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELK--KDQIGVVSMCIGTGMGAA 118
Query: 399 LVLE 402
+
Sbjct: 119 AIFI 122
>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 111 bits (279), Expect = 2e-30
Identities = 49/123 (39%), Positives = 75/123 (60%), Gaps = 2/123 (1%)
Query: 284 IAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQK--L 341
+A++R A A P P A KA+ AGL S + E+NEAF+ A+A +
Sbjct: 3 LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWS 62
Query: 342 LGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHKKGKYGVGGICNGGGGASALVL 401
L ++ +++N +GGA++LGHPLG SGARIL TL+ +R +K ++G+ +C G G A+V+
Sbjct: 63 LSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRKVQFGLATMCIGVGQGIAVVV 122
Query: 402 ELM 404
E M
Sbjct: 123 EGM 125
>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
(3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
296]}
Length = 128
Score = 103 bits (258), Expect = 2e-27
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 280 GLQVIAKIRGFADAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIA-- 337
GL+ +A IR A A P P A KA+ AGL + ID+ E+NEAF+ A+
Sbjct: 1 GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVL 60
Query: 338 -NQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHKKGKYGVGGICNGGGGA 396
+ K+L E+VN HGGA++LGHP GCSGARI TLL V++ G +G+ +C G G
Sbjct: 61 KDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGGTFGLSTMCIGLGQG 120
Query: 397 SALVLE 402
A V E
Sbjct: 121 IATVFE 126
>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
[TaxId: 1902]}
Length = 208
Score = 37.4 bits (85), Expect = 0.002
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 99 CSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYLAEARKG 142
+ G+ A+ A ++I+ G +VV+GG++S + ++++ G
Sbjct: 160 QAGGLDALGHARRTIRRG-TPLVVSGGVDSALDPWGWVSQIASG 202
>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 216
Score = 35.4 bits (80), Expect = 0.008
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 88 NSVVCTTINKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSN 131
T ++ C+SG+ +V A ++I+ G D++ AG ++
Sbjct: 156 AEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADTPIT 199
>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 372
Score = 34.4 bits (78), Expect = 0.023
Identities = 15/119 (12%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 292 DAAQAPEWFTTAPSLAIPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNA 351
+ P + + + + + + + GL+ S ID + I+ + + + LG+ E
Sbjct: 256 LSENLPGYIFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQ 315
Query: 352 HGGAVS-LGHPLGCSGARILVTLLGVLRHKKGKYG--VGGICNGGGGAS--ALVLELMQ 405
++ G+ ++ L +++ + G G G + ++ ++++
Sbjct: 316 SWDVLARFGN---MLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 371
>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase
RmlC {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 32.5 bits (73), Expect = 0.058
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 160 WDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGL-FAWEIAPVEMSSG 218
+Y G+ ++ + + I A + L W +
Sbjct: 109 RTIYVSEGLAHGFLAL-QDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVD------ 161
Query: 219 RGKPFIIVDKDEGLEKFDAAKLMKLRPSFKE 249
G + D+D F+ + L P +++
Sbjct: 162 -GAAPSLSDRDAAAPSFEDVRASGLLPRWEQ 191
>d1mzra_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.8 bits (63), Expect = 1.1
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 281 LQVIAKIRGFADAAQAPEWFTTAPSLAIPKA---------IANAGLEASQIDYYEINEAF 331
++ +A G A W + + IPK+ + + EI +
Sbjct: 201 IRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAK-- 258
Query: 332 SVVAIANQKLLGLDPEQ 348
+ K LG DP+Q
Sbjct: 259 ----LDQGKRLGPDPDQ 271
>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
[TaxId: 1902]}
Length = 205
Score = 28.2 bits (62), Expect = 1.3
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 10/118 (8%)
Query: 260 IISDGAAALVLVSGVKALELGLQVIAKIRGFADAAQ-----APEWFTTAPSLAIPKAIAN 314
++++GAA VL AL G ++ A+I G+A + + I A+
Sbjct: 18 VLAEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDE 77
Query: 315 AGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVS-----LGHPLGCSGA 367
+ +A+ IDY + + + ++ +A VS +GH LG G+
Sbjct: 78 SRTDATDIDYINAHGSGTRQNDRHETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGS 135
>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 25.7 bits (57), Expect = 1.8
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 190 AIRSFKRGIAAQNSGLFAWEI 210
I +KR QN +FAWEI
Sbjct: 17 KIAEYKR----QNPTMFAWEI 33
>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
isomerase, PRAI {Escherichia coli [TaxId: 562]}
Length = 198
Score = 27.6 bits (60), Expect = 2.1
Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 12/204 (5%)
Query: 96 NKVCSSGMKAVMLAAQSIQLGINDIVVAGGMESMSNAPKYL-AEARKGSRLGHDTIVDGM 154
NKVC G+ A + G GG+ ++ +P+ + E + G+
Sbjct: 3 NKVC--GLTRGQDAKAAYDAGAI----YGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGV 56
Query: 155 LKDGLWDVYNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVE 214
++ D + + D+ R A L E P
Sbjct: 57 FRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTL--REALPAHVAIWKALSVGETLPAR 114
Query: 215 MSSGRGKPFIIVDKDEGLEKFDAAKLMKL-RPSFKEGGSVTAGN-ASIISDGAAALVLVS 272
K + + ++FD + L + G + A N G A L S
Sbjct: 115 EFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNS 174
Query: 273 GVKALELGLQVIAKIRGFADAAQA 296
V++ + G++ + +A
Sbjct: 175 AVES-QPGIKDARLLASVFQTLRA 197
>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 90
Score = 25.6 bits (56), Expect = 4.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 372 TLLGVLRHKKGKYGVGGICNGGGGASALVL 401
TLL LR K G G C GG + V+
Sbjct: 23 TLLAYLRRKLGLRGTKLGCGEGGCGACTVM 52
>d2nn6g2 b.84.4.2 (G:16-106) Ribosomal RNA-processing protein 40,
RRP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 25.5 bits (55), Expect = 4.7
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 354 GAVSLGHPLGCSGARILVTLLGVLRHKKGKYGVGG 388
V G L G R+LVT G LRHK+ G GG
Sbjct: 47 VRVVCGPGLRRCGDRLLVTKCGRLRHKEPGSGSGG 81
>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 65
Score = 25.0 bits (55), Expect = 4.7
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 191 IRSFKRGIAAQNSGLFAWEI 210
I +K+ + +FAWEI
Sbjct: 16 IAQYKQ----ECPSIFAWEI 31
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium
falciparum [TaxId: 5833]}
Length = 246
Score = 26.4 bits (57), Expect = 5.8
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 16/121 (13%)
Query: 163 YNDFGMGVCAEICANKHTITRDEQDSYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKP 222
N + E + E + +++F I ++ + +E P+
Sbjct: 117 NNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILVYE--PLWAIGTGKTA 174
Query: 223 FIIVDKDEGLEKFDAAKLMKLRPSFKE-----GGSVTAGNASIIS-----DGAAALVLVS 272
+ E K + GGSV N S + DG LV
Sbjct: 175 TPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGF----LVG 230
Query: 273 G 273
Sbjct: 231 N 231
>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
{Streptomyces coelicolor [TaxId: 1902]}
Length = 148
Score = 25.7 bits (56), Expect = 7.1
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 5/98 (5%)
Query: 308 IPKAIANAGLEASQIDYYEINEAFSVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGA 367
+ + G +AS +D+Y ++ + L +DP +L + A
Sbjct: 49 LKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFS--RATLTEYGNIASA 106
Query: 368 RILVTLLGVLRHKKGKYGVGGICNG-GGG--ASALVLE 402
+L L + + G G+ G G G A +
Sbjct: 107 VVLDALRRLFDEGGVEEGARGLLAGFGPGITAEMSLGC 144
>d1cf5a_ d.165.1.1 (A:) Beta-momorcharin {Bitter gourd (Momordica
charantia) [TaxId: 3673]}
Length = 249
Score = 26.0 bits (57), Expect = 9.1
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%)
Query: 188 SYAIRSFKRGIAAQNSGLFAWEIAPVEMSSGRGKPFIIVDKDEGLEKFDAAKLMKLRPS 246
S I +A G F PV++ G+ F + + D + K + L+ R S
Sbjct: 194 SKQIF-----LAQNQGGKFRN---PVDLIKPTGQRFQVTNVDSDVVKGNIKLLLNSRAS 244
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,452,612
Number of extensions: 67289
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 30
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)