BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015006
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 165/324 (50%), Gaps = 40/324 (12%)
Query: 51 MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 161
F GEG +P G E ++ M GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 162 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 221
E+ L FEK K+ ++ + ++++ ++ G FKEGK++ A +Y+K++ + +
Sbjct: 123 ELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 222 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281
+EE + R HLN+A C LKL +IE+CNK L+ + + KGL+RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLA 242
Query: 282 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 338
+ +FE A+ DF+ ++++ P+ AA ++L +Q + ++ +K + +F++ E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 339 ISEVGIENQGEDQAAGKNENDDSE 362
EN+ + +A+ + D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/324 (27%), Positives = 162/324 (50%), Gaps = 40/324 (12%)
Query: 51 MLGDGRLIKRRIRDGKG-EFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
M DG +I+R G+G P + + + L +YK L D + L
Sbjct: 21 MEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------------DQRELR 66
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAY-----DKFLRPANVPEGAHIQW 161
F GEG +P G E ++ GE ++V P YA+ +KF +P A +++
Sbjct: 67 FEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSVGKEKF----QIPPNAELKY 122
Query: 162 EIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP 221
E+ L FEK K+ + + ++++ ++ G FKEGK++ A +Y+K++ + +
Sbjct: 123 ELHLKSFEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS 182
Query: 222 QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281
+EE + R HLN+A C LKL +IE+CNK L+ + + KGL RRG A++A
Sbjct: 183 FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA 242
Query: 282 LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE---SKARKQFKGLFDKKPGE 338
+ +FE A+ DF+ ++++ P+ AA ++L +Q + ++ +K + +F++ E
Sbjct: 243 VNDFELARADFQKVLQLY----PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEE 298
Query: 339 ISEVGIENQGEDQAAGKNENDDSE 362
EN+ + +A+ + D+E
Sbjct: 299 ------ENKAKAEASSGDHPTDTE 316
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 101 bits (251), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 114 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 169
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 170 KPKDWTGLSFDGIMDE----AEKIRVTGNRLFKEGKFELAKAKYEKVLR----DFN---H 218
+ K+ S D ++E A++ ++ GN LFKE K E A +YE + DF +
Sbjct: 160 ETKEGKARS-DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY 218
Query: 219 VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278
QD + + +N HLN+AACL+KL ++I CN VL + K L+RRG A
Sbjct: 219 GKYQD-----MALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 279 YMALGEFEEAQRDFEMMMKVDKSSEPDATA---ALSKLKKQRQEVESKARKQFKGLFDKK 335
LG+ + A+ DF K PD A L L +Q + + K ++ +KG+F K
Sbjct: 274 KAELGQMDSARDDFRKAQKY----APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGK 329
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 140/289 (48%), Gaps = 18/289 (6%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+L DG +I+R R G+G P + + +H +G +VF D + +
Sbjct: 141 DLLEDGGIIRRTKRRGEG---YSNPNEGARVQIHLEGRCGG---RVF-------DCRDVA 187
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIEL 165
F+ GEG +P G + + M E ++ P Y + + +P + A + +E+ L
Sbjct: 188 FTVGEGEDHDIPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTL 247
Query: 166 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 225
FEK K+ + +++A ++ G FK GK+ A +Y K++ ++
Sbjct: 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK 307
Query: 226 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285
E K LN+A C LKL E K++E C+K L + A+ KGLYRRG A + + EF
Sbjct: 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367
Query: 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
E A+ DFE +++V+ ++ A + +K+ +E + R+ + +F K
Sbjct: 368 ESAKGDFEKVLEVNPQNKA-ARLQIFMCQKKAKEHNERDRRTYANMFKK 415
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 63 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFE 122
R G GE + P+ + VHY G L N +K +D+ D + +P FS G+G V + ++
Sbjct: 39 RVGHGE---ETPMIGDRVYVHYNGKLANGKK---FDSSHDRN-EPFVFSIGKGQVIKAWD 91
Query: 123 MCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
+ V M GEI + C P+YAY +P A + +E+ELL F
Sbjct: 92 IGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 137
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 18/289 (6%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+ DG +I+R R G+G P + + +H +G +D R +
Sbjct: 141 DLFEDGGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVA 187
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIEL 165
F+ GEG +P G + + M E ++ P Y + + +P + A + +E+ L
Sbjct: 188 FTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTL 247
Query: 166 LGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE 225
FEK K+ + +++A ++ G FK GK+ A +Y K++ ++
Sbjct: 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEK 307
Query: 226 EGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285
E K LN+A C LKL E K++E C+K L + A+ KGLYRRG A + + EF
Sbjct: 308 ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF 367
Query: 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334
E A+ DFE +++V+ ++ A +S +K+ +E + R+ + +F K
Sbjct: 368 ESAKGDFEKVLEVNPQNKA-ARLQISMCQKKAKEHNERDRRIYANMFKK 415
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 63 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFE 122
R G GE + P+ + VHYKG L N +K +D+ D + +P FS G+G V + ++
Sbjct: 39 RVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLGKGQVIKAWD 91
Query: 123 MCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
+ V M GEI + C P+YAY +P A + +EIELL F
Sbjct: 92 IGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 137
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 6/154 (3%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR--DFNHVNPQDDEEGKVFVGKRNLL 237
D I+ +E ++ GN FK +E+A KY KVLR + + +D + K+ + +
Sbjct: 217 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 276
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
LN+ AC LK+ + + ++++C + L+ +P++ K LYRR + L E+++A D + +
Sbjct: 277 -LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 298 V---DKSSEPDATAALSKLKKQRQEVESKARKQF 328
+ DK+ + + K+K Q+ + ++ K F
Sbjct: 336 IAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 71 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 130
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M
Sbjct: 24 WDTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKK 79
Query: 131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 188
GE AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 80 GENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 139
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 8/125 (6%)
Query: 48 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQP 107
V ++ D +++K+ +++ +G + P +++ V G L ++ VF D +P
Sbjct: 237 VTEIGDDKKILKKVLKEXEG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EP 290
Query: 108 LEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIEL 165
EF + E V EG + V M GE+ALVT PP+YAY + + A VP + + +E+EL
Sbjct: 291 FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVEL 350
Query: 166 LGFEK 170
+ F K
Sbjct: 351 VSFVK 355
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 23/177 (12%)
Query: 2 GIGTMTREEKAVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLI 58
GI TM + E A+ + + + SP P + VRD+ DG +
Sbjct: 73 GIKTMKKGENALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIF 130
Query: 59 KRRIRDG-KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 117
K+ +++G K E P D + V Y+ L D V + + +EF+ +G +
Sbjct: 131 KKILKEGDKWENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHL 178
Query: 118 PEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGFE 169
V+ M GE L+ P Y + + RPA VP A + ++EL+ ++
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWK 235
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Query: 71 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLP 130
D P + VHY G LL+ +K +D+ D D +F G+G V +G++ ++ M
Sbjct: 40 WDTPEVGDEVEVHYTGTLLDGKK---FDSSRDRD-DTFKFKLGQGQVIKGWDQGIKTMKK 95
Query: 131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWT--GLSFDGIMDEAEK 188
GE AL T PP+ AY + P +P A +Q+++ELL + +D G F I+ E +K
Sbjct: 96 GENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDK 155
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 69/128 (53%), Gaps = 8/128 (6%)
Query: 48 VRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQP 107
V ++ D +++K+ +++ +G + P +++ V G L ++ VF D +P
Sbjct: 253 VTEIGDDKKILKKVLKEXEG---YERPNEGAVVTVKITGKL--QDGTVFLKKGHDEQ-EP 306
Query: 108 LEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY--DKFLRPANVPEGAHIQWEIEL 165
EF + E V EG + V M GE+ALVT PP+YAY + + A VP + + +E+EL
Sbjct: 307 FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVEL 366
Query: 166 LGFEKPKD 173
+ F K K+
Sbjct: 367 VSFVKDKE 374
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 23/176 (13%)
Query: 2 GIGTMTREEKAVIYVTSQYL---TPSPLMPVVEGCXXXXXXXXXXXXIQVRDMLGDGRLI 58
GI TM + E A+ + + + SP P + VRD+ DG +
Sbjct: 89 GIKTMKKGENALFTIPPELAYGESGSP--PTIPANATLQFDVELLSWTSVRDIAKDGGIF 146
Query: 59 KRRIRDG-KGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 117
K+ +++G K E P D + V Y+ L D V + + +EF+ +G +
Sbjct: 147 KKILKEGDKWENPKDP----DEVFVKYEARL--------EDGTVVSKSEGVEFTVKDGHL 194
Query: 118 PEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-----NVPEGAHIQWEIELLGF 168
V+ M GE L+ P Y + + RPA VP A + ++EL+ +
Sbjct: 195 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSW 250
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 34 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 87 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 245
I GNRL++EG + A AKY + ++ ++ ++ + L LN C
Sbjct: 17 IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 76
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305
L + E + ++ C+ +L+ +VK ++RG A+ A+ +EAQ DF ++++D + P
Sbjct: 77 LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 136
Query: 306 ATAALSKLKKQRQEVESKARKQFKGLF 332
+ L L+ + ++ + + + +F+G+F
Sbjct: 137 VSRELQALEARIRQKDEEDKARFRGIF 163
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R G GE + P+ + VHYKG L N +K +D+ D + +P FS G
Sbjct: 18 DRGVLKIVKRVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLG 70
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 71 KGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 126
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 15/119 (12%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 239
DG + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 7 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 58
Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
LG+ ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 59 RTECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 110
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 63 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFE 122
R G GE + P+ + VHYKG L N +K +D+ D + +P FS G+G V + ++
Sbjct: 43 RVGNGE---ETPMIGDKVYVHYKGKLSNGKK---FDSSHDRN-EPFVFSLGKGQVIKAWD 95
Query: 123 MCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+ V M GEI + C P+YAY +P A + +EIELL F+
Sbjct: 96 IGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFK 142
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+ DG +I+R R G+G P + + +H +G +D R +
Sbjct: 145 DLFEDGGIIRRTKRKGEG---YSNPNEGATVEIHLEGRCGGR----MFDCR------DVA 191
Query: 110 FSSGEGL---VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIEL 165
F+ GEG +P G + + M E ++ P Y + + +P + A + +E+ L
Sbjct: 192 FTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTL 251
Query: 166 LGFEKPKD-W 174
FEK K+ W
Sbjct: 252 KSFEKAKESW 261
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 12/154 (7%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL---LHLNVAACL 245
I+ GN FK+ + A KY++ L F H DD+ + K+N+ +LN+A C
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--ILLDKKKNIEISCNLNLATCY 98
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS--- 302
K + K+I+ +KVL + +VK LY+ G+A M G EEA+ + ++ ++
Sbjct: 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
Query: 303 EPDATAALSKLKKQRQEVESKARKQFKGLFDKKP 336
++KLK+ R+ K + F G+FDK P
Sbjct: 159 RNSYELCVNKLKEARK----KDKLTFGGMFDKGP 188
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 29 DEGVLKVIKREGTG---TETPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 81
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ V M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 82 KGEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 137
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 30 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 82
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 83 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 138
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 20/175 (11%)
Query: 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN 240
G + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 1 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIE----LNPSN----AIYYGNRSLAYLR 52
Query: 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
LG+ ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 53 TECYGYALGDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV-- 103
Query: 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEVGIENQG-EDQAAG 354
+P A K ++ + V+ KA ++ + K + + IE+ ED+ +G
Sbjct: 104 --KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 34 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 86
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F+
Sbjct: 87 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 142
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHL 239
DG + AE+++ N FK +E A Y + + +NP + ++ G R+L +L
Sbjct: 15 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAI----ELNPSN----AIYYGNRSLAYL 66
Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
L + ++IE K ++KG YRR + MALG+F A RD+E ++KV
Sbjct: 67 RTECYGYALNDATRAIELDKK-------YIKGYYRRAASNMALGKFRAALRDYETVVKV 118
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 7/115 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++K R+G G + P+ + VHY G LL+ K +D+ +D + F G
Sbjct: 50 DEGVLKVIKREGTG---TEMPMIGDRVFVHYTGWLLDGTK---FDSSLDRKDK-FSFDLG 102
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
+G V + +++ + M GE+ +TC P+YAY P +P A + +E+EL F
Sbjct: 103 KGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 157
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 54 DGRLIKRRIRDGKGEF-PMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSS 112
DG +I+R G+G P + + + L +YK L ++ + F E
Sbjct: 167 DGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF------------EIGE 214
Query: 113 GEGL-VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPA-NVPEGAHIQWEIELLGFEK 170
GE L +P G E ++ M GE ++V P YA+ + +P A +++E+ L FEK
Sbjct: 215 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEK 274
Query: 171 PKD 173
K+
Sbjct: 275 AKE 277
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 55.8 bits (133), Expect = 5e-08, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P + VHY G L + KVF +R G+P F+ G G V G++ V M G+
Sbjct: 17 PKAGQVAVVHYTGTL--ADGKVFDSSRTR--GKPFRFTVGRGEVIRGWDEGVAQMSVGQR 72
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A + C PDYAY P +P A + +++ELL E
Sbjct: 73 AKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML N +K +D+ D + +P +F G+ V +GFE M G+
Sbjct: 16 PKKGQTCVVHYTGMLQNGKK---FDSSRDRN-KPFKFRIGKQEVIKGFEEGAAQMSLGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +TC PD AY P +P A + +++ELL E
Sbjct: 72 AKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 107
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 15/118 (12%)
Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
A++ + GN FK+G + A +R +N +D E +L+ N AACL
Sbjct: 13 AQEEKNKGNEYFKKGDYPTA-------MRHYNEAVKRDPENA--------ILYSNRAACL 57
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
KL E +++++ C+ + + +KG R+ +A+ E+ +AQR +E ++VD S+E
Sbjct: 58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V GFE V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGFEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL 246
E++R GN LFK G + A A Y + L PQD + +LH N AAC L
Sbjct: 29 EQLRKEGNELFKCGDYGGALAAYTQAL--GLDATPQD----------QAVLHRNRAACHL 76
Query: 247 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
KL + K+ +K ++ + VK LYRR A LG ++A D + + ++
Sbjct: 77 KLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 3/129 (2%)
Query: 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG---KRNLLHLNVAACL 245
I GNRL++EG + A AKY + ++ ++ ++ + L LN C
Sbjct: 11 IHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCK 70
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305
L + E + ++ C+ +L+ +VK ++RG A+ A+ +EAQ DF ++++D + P
Sbjct: 71 LVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDPALAPV 130
Query: 306 ATAALSKLK 314
+ L L+
Sbjct: 131 VSRELQALE 139
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFVLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 107
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
DG ++K ++G+G P + + VHY G L N K +D+ D G F+ G
Sbjct: 13 DGGVLKLIKKEGQGVVK---PTTGTTVKVHYVGTLENGTK---FDSSRDR-GDQFSFNLG 65
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
G V +G+++ V M GE+A T DY Y P +P GA + +E+EL
Sbjct: 66 RGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELF 118
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 18 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 73
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 74 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 109
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGLEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDKN--KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGVPGIIPPHATLVFDVELLKLE 107
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 81 CVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPP 140
VHY GML E+ K F +R N +P +F G+ V G+E V M G+ A +T P
Sbjct: 23 VVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78
Query: 141 DYAYDKFLRPANVPEGAHIQWEIELLGFE 169
DYAY P +P A + +++ELL E
Sbjct: 79 DYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G++ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWQEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 181 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 237
G MD AE + GN +K+G ++ A Y+K L ++P +
Sbjct: 1 GAMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALE----LDPNNASA----------- 45
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
N+ K G+ +K+IE K L+ +P + K YRRG AY G++++A D++ ++
Sbjct: 46 WYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Query: 298 VDKSSEPDATAALSKLKKQRQE 319
+D P+ A L +Q+
Sbjct: 106 LD----PNNAKAKQNLGNAKQK 123
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
DG ++K +R G+G + P + + VHY G L KVF +R N P +F G
Sbjct: 14 DGGVVKTILRKGEGG-EENAPKKGNEVTVHYVGKL-ESSGKVFDSSRERN--VPFKFHLG 69
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
+G V +G+++CV M E V Y Y + ++P + + +EIEL+ F
Sbjct: 70 QGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 3/156 (1%)
Query: 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD--EEGKVFVGKRNL- 236
D + E +R GN LF + ++ A Y L + + ++ E V + ++N+
Sbjct: 5 DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
L+ N++ C L +G+ ++ E ++VL + K L+RR A +A + +EA+ D ++++
Sbjct: 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124
Query: 297 KVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332
+ ++ + + ++R E ++ +R + +F
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML E+ K F +R N +P +F G+ V G+ V M G+
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRN--KPFKFMLGKQEVIRGWAEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML + KKV D+ D + +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGML-EDGKKV--DSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133
P VHY GML + +K D+ D + +P +F G+ V G+E V M G+
Sbjct: 16 PKRGQTCVVHYTGMLEDGKK---MDSSRDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQR 71
Query: 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169
A +T PDYAY P +P A + +++ELL E
Sbjct: 72 AKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 107
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
+G + RI G G P L+ +HY G L N +K +D+ VD G P + + G
Sbjct: 5 EGNVKIDRISPGDGA---TFPKTGDLVTIHYTGTLENGQK---FDSSVDR-GSPFQCNIG 57
Query: 114 EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
G V +G+++ + + GE A +T P YAY P +P + + +++ELL
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELL 110
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 21/140 (15%)
Query: 156 GAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 215
G+H+ E ++ + GLS A +++ GN F F A Y+ +
Sbjct: 1 GSHMNGEPDIAQLK------GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIE- 53
Query: 216 FNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275
++P + + + N++AC + G+ K IE K L+ P H K L RR
Sbjct: 54 ---LDPNEP-----------VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRR 99
Query: 276 GMAYMALGEFEEAQRDFEMM 295
A +LG F +A D ++
Sbjct: 100 ASANESLGNFTDAMFDLSVL 119
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
K +D NP + Y RG Y L +++ A+ DF+
Sbjct: 301 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295
+ + N++AC + G+ K IE K L+ P H K L RR A +LG F +A D ++
Sbjct: 56 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
K +D NP + Y RG Y L +++ A+ DF+
Sbjct: 297 KAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 330
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEG 115
+L K+ + G G + P + VHY G + K F +R + G+P +F+ G G
Sbjct: 25 QLEKKVLTPGDG---VTKPQAGKKVTVHYDGRF--PDGKQFDSSR--SRGKPFQFTLGAG 77
Query: 116 LVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
V +G++ V M GE AL T P AY + P +P A + +E+ELL
Sbjct: 78 EVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELL 128
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
+ VHY G L + +K +D+ D + P EF G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FGSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAAGVIPPNATLVFEVELL 207
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
++ DG +IK ++ G E + P + + VHY G L E +D+ D + P +
Sbjct: 11 ELTADGGVIKTILKKGD-EGEENIPKKGNEVTVHYVGKL--ESTGKVFDSSFDRN-VPFK 66
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168
F +G V +G+++CV M E LV Y Y ++P + + +EIELL F
Sbjct: 67 FHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
+ VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCP 139
+ VHY G L + +K F ++ ND P F G G+V +G++ V+ M G + +T P
Sbjct: 125 VSVHYTGWLTDGQK--FDSSKDRND--PFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIP 180
Query: 140 PDYAYDKFLRPANVPEGAHIQWEIELL 166
P Y +P A + +E+ELL
Sbjct: 181 PQLGYGARGAGGVIPPNATLVFEVELL 207
>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
pdb|2F4E|B Chain B, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana
Length = 180
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 12/124 (9%)
Query: 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSG 113
D ++ K+ I++G G P S +HY+ N + K F DT ++ QP+E G
Sbjct: 48 DEKVSKQIIKEGHGSKPSKY----STCFLHYRAWTKNSQHK-FEDTW--HEQQPIELVLG 100
Query: 114 -EGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDK---FLRPANVPEGAHIQWEIELLGFE 169
E G + V M GE ALV + AY K F P NVP A + +E+E++GF+
Sbjct: 101 KEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFP-NVPPMADLLYEVEVIGFD 159
Query: 170 KPKD 173
+ K+
Sbjct: 160 ETKE 163
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 79 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 138
+L +HY G L E +D+ + + QP FS G G V +G++ + M GE +
Sbjct: 11 VLHMHYTGKL---EDGTEFDSSLPQN-QPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVI 66
Query: 139 PPDYAYDKFLRPANVPEGAHIQWEIELLGFEK 170
P + Y + P +P GA + +E+ELL E+
Sbjct: 67 PSELGYGERGAPPKIPGGATLVFEVELLKIER 98
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 15/123 (12%)
Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
D A ++ GN F++G + A Y + ++ NP+D + L+ N AA
Sbjct: 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR----NPKDAK-----------LYSNRAA 58
Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
C KL E + +++ C + + P +KG R+ A A+ ++ +A ++ + +D S +
Sbjct: 59 CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118
Query: 304 PDA 306
A
Sbjct: 119 EAA 121
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 47 QVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQ 106
++ D+ GD ++K IR+G G D D+ + V Y G L + ++ +D+
Sbjct: 18 RMLDISGDRGVLKDVIREGAG----DLVAPDASVLVKYSGYLEHMDRP--FDSNYFRK-T 70
Query: 107 PLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELL 166
P GE + G E+ + M GE+A P+YAY P +P + +EIELL
Sbjct: 71 PRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELL 130
Query: 167 GF 168
F
Sbjct: 131 DF 132
>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25
Length = 116
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 71 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 124
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 14 TNFPKKGDVVHCWYTGTL---QDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEA 70
Query: 125 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELL 166
+ M GE A + P++AY K +P A +P A + +E+EL+
Sbjct: 71 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 82 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 51 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 106
Query: 142 YAYDKFLRPANVPEGAHIQWEIELL 166
Y +P A + +E+ELL
Sbjct: 107 LGYGARGAGGVIPPNATLVFEVELL 131
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 82 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 35 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 90
Query: 142 YAYDKFLRPANVPEGAHIQWEIELL 166
Y +P A + +E+ELL
Sbjct: 91 LGYGARGAGGVIPPNATLVFEVELL 115
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 79 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTC 138
L+ VHY+G L ++ +F+ T N+GQP+ F+ G +G++ ++ M GE +
Sbjct: 34 LMLVHYEGYL-EKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLII 92
Query: 139 PPDYAYDKFLRPANVPEGAHIQWEIELL 166
PP Y K + +P + + + I+LL
Sbjct: 93 PPALGYGKEGK-GKIPPESTLIFNIDLL 119
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC 244
EAE+++ GN K FE A Y K + +NP + + N AA
Sbjct: 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIE----LNPANA-----------VYFCNRAAA 55
Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304
KLG +++ C + + +PA+ K R G+A +L + EA ++ +++D P
Sbjct: 56 YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELD----P 111
Query: 305 DATAALSKLK 314
D S LK
Sbjct: 112 DNETYKSNLK 121
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 82 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
VHY G L + +K +D+ D + P F G G V +G++ V+ M G + +T PP
Sbjct: 31 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPPQ 86
Query: 142 YAYDKFLRPANVPEGAHIQWEIELL 166
Y +P A + +E+ELL
Sbjct: 87 LGYGARGAGGVIPPNATLVFEVELL 111
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 82 VHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPD 141
VHY G L + +K +D+ D + P F G G+V +G++ V+ M G + +T PP
Sbjct: 31 VHYTGWLTDGQK---FDSSKDRN-DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQ 86
Query: 142 YAYDKFLRPANVPEGAHIQWEIELL 166
Y +P A + +E+ELL
Sbjct: 87 LGYGAGGAGGVIPPNATLVFEVELL 111
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 181 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 237
G MD AE GN +K+G ++ A Y+K L ++P + E
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE----LDPNNAEA----------- 45
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
N+ K G+ ++IE K L+ +P + + Y G AY G+++EA ++ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 298 VDKSSEPDATAALSKLKKQRQE 319
+D P+ A L +Q+
Sbjct: 106 LD----PNNAEAKQNLGNAKQK 123
>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex
Length = 119
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 71 MDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDN------DGQPLEFSSGEGLVPEGFEMC 124
+ P ++ Y G L + +DT + + +PL F G G V G++
Sbjct: 17 TNFPKKGDVVHCWYTGTLPDG---TVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEA 73
Query: 125 VRLMLPGEIALVTCPPDYAYDKFLRP-ANVPEGAHIQWEIELL 166
+ M GE A + P++AY K +P A +P + +E+EL+
Sbjct: 74 LLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
GN +K+G ++ A Y+K L ++P+ E N+ K G+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALE----LDPRSAEA-----------WYNLGNAYYKQGDYD 52
Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
++IE K L+ +P + Y G AY G+++EA ++ +++D S
Sbjct: 53 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECR 252
GN +K+G ++ A Y+K L ++P+ E N+ K G+
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALE----LDPRSAEA-----------WYNLGNAYYKQGDYD 86
Query: 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302
++IE K L+ +P + Y G AY G+++EA ++ +++D S
Sbjct: 87 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
N+ K G+ ++IE K L+ +P + Y G AY G+++EA ++ +++D
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 300 KSS 302
S
Sbjct: 66 PRS 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 247
K+ + L ++G++ A +KYE V++ P E K + H C K
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVMK----TEPSIAE--YTVRSKERICH-----CFSK 307
Query: 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 307
+ ++I C++VL P +V L R AY+ ++EA +D+E + +E D
Sbjct: 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET---AQEHNENDQQ 364
Query: 308 AALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV 342
K QR +S+ R +K L K+ + E+
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
HL + LL G+ ++ + +D +P + YRR ++A+G+ + A D +++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 298 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 347
+ + D TAA +L++ +Q +A FK + P E E ++Q
Sbjct: 89 L----KMDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
DE +++R F G + A A +K+L +V V L L A
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKIL--------------EVCVWDAELRELR-AE 185
Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
C +K GE RK+I + + Y+ Y LG+ E + + +K+D+
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298
N+ K G+ ++IE K L+ +P + + Y G AY G+++EA ++ +++
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72
Query: 299 DKSSEPDATAALSKLKKQRQ 318
D P+ A L +Q
Sbjct: 73 D----PNNAEAKQNLGNAKQ 88
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 14/155 (9%)
Query: 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 247
K+ + L ++G++ A +KYE V + P E K + H C K
Sbjct: 259 KLIESAEELIRDGRYTDATSKYESVXK----TEPSIAE--YTVRSKERICH-----CFSK 307
Query: 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 307
+ ++I C++VL P +V L R AY+ ++EA +D+E + +E D
Sbjct: 308 DEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQ---EHNENDQQ 364
Query: 308 AALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV 342
K QR +S+ R +K L K+ + E+
Sbjct: 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEI 399
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
HL + LL G+ ++ + +D +P + YRR ++A G+ + A D +++
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQ 88
Query: 298 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 347
+ + D TAA +L++ +Q +A FK + P E E ++Q
Sbjct: 89 L----KXDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 15/117 (12%)
Query: 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA 243
DE +++R F G + A A +K+L +V V L L A
Sbjct: 141 DEXQRLRSQALNAFGSGDYTAAIAFLDKIL--------------EVCVWDAELRELR-AE 185
Query: 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300
C +K GE RK+I + + Y+ Y LG+ E + + +K+D+
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242
>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human
Fkbp38
pdb|3EY6|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Human
Fkbp38
Length = 121
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 6 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 55
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 165
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 56 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 111
>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding
Protein 8
Length = 118
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 8 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 57
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIEL 165
F+ G+ V + ++ V LM GE A+VT Y Y R +P A + E+ L
Sbjct: 58 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTL 113
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK 247
K+ + L ++G++ A +KYE V + P E K + H C K
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVXK----TEPSVAE--YTVRSKERICH-----CFSK 284
Query: 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293
+ ++I C++VL P +V L R AY+ ++EA +D+E
Sbjct: 285 DEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYE 330
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
HL + LL G+ ++ + +D +P + YRR ++A G+ + A D ++
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIA 65
Query: 298 VDKSSEPDATAALSKLKK----QRQEVESKARKQFKGLFDKKPGEISEVGIENQ 347
+ + D TAA +L++ +Q +A FK + P E E E+Q
Sbjct: 66 L----KXDFTAA--RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
A++++ GNRLF K+ A A Y + + NP V + + N A C
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NP--------LVA---VYYTNRALCY 48
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKVDKS 301
LK+ + +++ C + L+ + VK + G + + ++EA QR + + + +
Sbjct: 49 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
Query: 302 SEPDATAALSKLKKQR 317
D +AL KK+R
Sbjct: 109 FGDDIPSALRIAKKKR 124
>pdb|2LKN|A Chain A, Solution Structure Of The Ppiase Domain Of Human
Aryl-Hydrocarbon Receptor-Interacting Protein (Aip)
Length = 165
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 59 KRRIRDGKGEFPMDCPLHD-SLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLV 117
KR I++G+GE P D + HY+ + ++E V D+R G+P+E G+
Sbjct: 14 KRVIQEGRGELP---DFQDGTKATFHYRTLHSDDEGTVLDDSRAR--GKPMELIIGKKFK 68
Query: 118 PEGFEMCVRLMLPGEIALVTC 138
+E V M GEIA C
Sbjct: 69 LPVWETIVCTMREGEIAQFLC 89
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 22/142 (15%)
Query: 181 GIMD---EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLL 237
G MD AE GN +K+G ++ A Y+K L + P + E
Sbjct: 1 GAMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELY----PNNAEA----------- 45
Query: 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297
N+ K G+ ++IE K L+ P + + Y G AY G+++EA ++ ++
Sbjct: 46 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
Query: 298 VDKSSEPDATAALSKLKKQRQE 319
+ P+ A L +Q+
Sbjct: 106 L----YPNNAEAKQNLGNAKQK 123
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 102 DNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY 144
D + +PLEF GEG + +GFE V M G+ V P + AY
Sbjct: 39 DREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81
>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
Fkbp38 (Fkbp38ntd)
Length = 157
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 38 DILGNGLLRKKTLVPGPPG--SSRPVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 87
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAY-DKFLRPANVPEGAHIQWEIEL 165
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 88 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 144
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVA 242
M + EK + GN LFK+G + A Y++++ PQ+ VG + N A
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLIT----AQPQNP------VG-----YSNKA 45
Query: 243 ACLLKLGECRKSIEACNKVL--DANPAHV----KGLYRRGMAYMALGEFE 286
L+KLGE ++I+ C + L + HV K YR +A A+G +
Sbjct: 46 MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95
Score = 28.9 bits (63), Expect = 5.6, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303
L K G R+++ ++++ A P + G + MA + LGE+ +A + + ++ ++E
Sbjct: 14 LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 19/136 (13%)
Query: 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL 245
A++++ GNRLF K+ A A Y + + NP V + + N A C
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR----NP--------LVA---VYYTNRALCY 53
Query: 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEA----QRDFEMMMKVDKS 301
LK+ + +++ C + L+ + VK + G + + ++EA QR + + + +
Sbjct: 54 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
Query: 302 SEPDATAALSKLKKQR 317
D +AL KK+R
Sbjct: 114 FGDDIPSALRIAKKKR 129
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 240 NVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299
N+ K G+ ++IE K L+ +P + Y G AY G+++EA ++ +++D
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 300 KSS 302
S
Sbjct: 68 PRS 70
>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human
Cdna
Length = 135
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 50 DMLGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE 109
D+LG+G L K+ + G P+ ++ VH + L N TRV + + L
Sbjct: 12 DILGNGLLRKKTLVPGPPGSSR--PVKGQVVTVHLQTSLEN-------GTRVQEEPE-LV 61
Query: 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGAHIQWEIEL 165
F+ G+ V + ++ V LM GE A+VT Y Y + R +P A + E+ L
Sbjct: 62 FTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTL 118
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 231 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 290
+G+ +++++ G+ +I A KVL A+P +V+ L + G YM +G +A
Sbjct: 1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIE 60
Query: 291 DFEMMMKVDKSS 302
+ + +D +S
Sbjct: 61 SLKKFVVLDTTS 72
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDF 292
+GE K+IEA K + P ++ G+AY G +EA + F
Sbjct: 120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 262 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQR 317
+DA+P +K LY + + AL ++ R+F ++V D PD + L K
Sbjct: 259 IDASPLPLKTLYYKKIDTSALKSIRDSCRNFPGYVRVVYEEDSGILPDLMGEIDNLVK-- 316
Query: 318 QEVESKARKQFKGLFDKKPGEISE 341
+E K+R++ + + + P E E
Sbjct: 317 --IERKSRREIEEVLRESPEEFKE 338
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 262 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV----DKSSEPDATAALSKLKKQR 317
+DA+P +K LY + + AL + R+F ++V D PD + L K
Sbjct: 259 IDASPLPLKTLYYKKIDTSALKSIRDFCRNFPGYVRVVYEEDSGILPDLXGEIDNLVK-- 316
Query: 318 QEVESKARKQFKGLFDKKPGEISE 341
+E K+R++ + + + P E E
Sbjct: 317 --IERKSRREIEEVLRESPEEFKE 338
>pdb|2OT2|A Chain A, Solution Structure Of Hypc
Length = 90
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 224 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266
DE G+ VG+ L+H+ A ++ E R +++A + D P
Sbjct: 37 DENGQPRVGQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEP 79
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIAL 137
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 260 KVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296
KV +ANP + +R G+A LG F+EA F++ +
Sbjct: 101 KVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,508,921
Number of Sequences: 62578
Number of extensions: 536859
Number of successful extensions: 1367
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1204
Number of HSP's gapped (non-prelim): 130
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)