Query 015006
Match_columns 414
No_of_seqs 440 out of 3950
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:11:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 1.4E-61 3E-66 457.6 34.6 310 1-345 53-366 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 3.3E-37 7.2E-42 272.0 17.4 275 55-333 10-328 (329)
3 KOG0549 FKBP-type peptidyl-pro 100.0 8.7E-28 1.9E-32 203.4 15.0 161 2-171 15-178 (188)
4 KOG0544 FKBP-type peptidyl-pro 99.9 9.8E-27 2.1E-31 173.9 11.1 106 56-168 2-107 (108)
5 COG0545 FkpA FKBP-type peptidy 99.9 2.7E-23 5.8E-28 180.4 11.8 105 54-168 100-204 (205)
6 KOG0553 TPR repeat-containing 99.9 6.6E-22 1.4E-26 181.2 12.4 125 181-321 76-200 (304)
7 KOG4234 TPR repeat-containing 99.8 1.6E-20 3.5E-25 162.0 14.4 137 179-326 88-224 (271)
8 PRK11570 peptidyl-prolyl cis-t 99.8 7E-19 1.5E-23 158.0 12.9 105 54-168 101-205 (206)
9 TIGR03516 ppisom_GldI peptidyl 99.8 1.9E-18 4E-23 151.6 13.2 110 53-169 67-176 (177)
10 KOG0552 FKBP-type peptidyl-pro 99.8 1.7E-18 3.6E-23 154.4 11.7 108 52-168 117-225 (226)
11 PF00254 FKBP_C: FKBP-type pep 99.7 2.6E-17 5.7E-22 130.2 10.7 90 73-166 4-94 (94)
12 KOG4648 Uncharacterized conser 99.7 1.3E-17 2.8E-22 154.6 10.1 121 179-315 90-210 (536)
13 KOG0548 Molecular co-chaperone 99.7 3.4E-17 7.3E-22 160.0 12.6 116 186-317 358-473 (539)
14 KOG0547 Translocase of outer m 99.7 8.9E-17 1.9E-21 155.1 14.1 109 175-298 104-212 (606)
15 PRK10902 FKBP-type peptidyl-pr 99.7 1.2E-16 2.7E-21 148.7 13.7 108 53-171 144-251 (269)
16 KOG0551 Hsp90 co-chaperone CNS 99.7 1.7E-16 3.7E-21 146.8 11.8 107 185-302 80-186 (390)
17 KOG0543 FKBP-type peptidyl-pro 99.7 1.3E-15 2.8E-20 145.4 15.0 219 63-303 1-291 (397)
18 KOG0550 Molecular chaperone (D 99.7 3.6E-16 7.9E-21 148.3 10.9 128 181-321 244-371 (486)
19 KOG0548 Molecular co-chaperone 99.6 9.5E-16 2.1E-20 150.0 11.2 113 186-314 2-114 (539)
20 TIGR00990 3a0801s09 mitochondr 99.6 2E-14 4.2E-19 151.8 17.8 136 152-304 94-229 (615)
21 PLN03088 SGT1, suppressor of 99.6 1.2E-14 2.7E-19 142.7 15.0 119 186-320 2-120 (356)
22 KOG0546 HSP90 co-chaperone CPR 99.6 6.1E-15 1.3E-19 138.0 11.0 243 80-333 111-372 (372)
23 PRK15359 type III secretion sy 99.5 4E-13 8.7E-18 114.9 14.6 113 189-317 27-139 (144)
24 KOG4642 Chaperone-dependent E3 99.5 2E-13 4.4E-18 121.3 10.7 118 185-317 9-130 (284)
25 KOG0376 Serine-threonine phosp 99.5 9.2E-14 2E-18 135.2 7.1 121 185-321 3-123 (476)
26 TIGR02552 LcrH_SycD type III s 99.4 1.7E-11 3.7E-16 103.2 13.6 114 186-315 17-130 (135)
27 KOG0544 FKBP-type peptidyl-pro 99.3 1.2E-12 2.6E-17 98.6 4.6 45 1-45 62-107 (108)
28 PRK15095 FKBP-type peptidyl-pr 99.3 6.6E-12 1.4E-16 108.1 8.1 69 75-147 6-74 (156)
29 PRK15363 pathogenicity island 99.3 7E-11 1.5E-15 100.4 14.1 102 186-302 35-136 (157)
30 PF13414 TPR_11: TPR repeat; P 99.3 1.6E-11 3.4E-16 90.9 8.2 66 235-300 3-69 (69)
31 PRK11189 lipoprotein NlpI; Pro 99.2 9.5E-11 2.1E-15 112.5 13.3 103 185-302 63-165 (296)
32 PRK10370 formate-dependent nit 99.2 3.7E-10 8E-15 101.8 14.4 103 186-303 73-178 (198)
33 KOG4626 O-linked N-acetylgluco 99.2 1.1E-10 2.3E-15 116.2 9.8 80 235-315 388-467 (966)
34 KOG4626 O-linked N-acetylgluco 99.2 3.1E-10 6.7E-15 113.1 12.2 114 189-318 289-402 (966)
35 PRK10737 FKBP-type peptidyl-pr 99.1 1.7E-10 3.6E-15 102.2 8.9 68 75-147 4-71 (196)
36 KOG1308 Hsp70-interacting prot 99.1 5.4E-11 1.2E-15 111.3 4.9 123 176-315 104-226 (377)
37 TIGR00990 3a0801s09 mitochondr 99.1 1.4E-09 3.1E-14 115.0 16.0 113 186-314 331-443 (615)
38 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.3E-09 2.8E-14 89.0 12.2 104 187-302 3-109 (119)
39 PRK02603 photosystem I assembl 99.1 2.3E-09 4.9E-14 94.5 13.8 111 181-303 30-154 (172)
40 KOG0624 dsRNA-activated protei 99.1 9.4E-10 2E-14 102.9 11.7 103 185-302 37-139 (504)
41 PF12895 Apc3: Anaphase-promot 99.0 6.1E-10 1.3E-14 85.9 7.3 83 199-295 2-84 (84)
42 COG1047 SlpA FKBP-type peptidy 99.0 7.4E-10 1.6E-14 95.2 8.0 69 75-147 4-72 (174)
43 PF13432 TPR_16: Tetratricopep 99.0 1.2E-09 2.7E-14 79.7 7.8 64 239-302 1-64 (65)
44 PRK09782 bacteriophage N4 rece 99.0 6.7E-09 1.4E-13 113.7 16.5 116 187-318 610-725 (987)
45 CHL00033 ycf3 photosystem I as 99.0 9.9E-09 2.1E-13 90.0 14.6 113 183-307 32-158 (168)
46 KOG0547 Translocase of outer m 99.0 3.6E-09 7.8E-14 103.1 12.6 103 185-302 325-427 (606)
47 KOG0624 dsRNA-activated protei 99.0 1.5E-09 3.3E-14 101.5 8.9 133 175-319 258-390 (504)
48 cd00189 TPR Tetratricopeptide 99.0 3.9E-09 8.5E-14 80.7 9.9 98 189-301 3-100 (100)
49 PF13414 TPR_11: TPR repeat; P 99.0 1.1E-09 2.3E-14 81.0 5.8 66 186-266 3-69 (69)
50 KOG1173 Anaphase-promoting com 98.9 8.5E-09 1.8E-13 102.2 12.4 118 188-314 416-533 (611)
51 PRK10370 formate-dependent nit 98.9 3.3E-08 7.1E-13 89.1 15.1 127 198-341 51-180 (198)
52 PRK15359 type III secretion sy 98.9 1.4E-08 3E-13 86.8 11.5 108 206-333 13-120 (144)
53 TIGR03302 OM_YfiO outer membra 98.9 3.6E-08 7.8E-13 91.1 15.2 114 185-311 32-156 (235)
54 KOG1126 DNA-binding cell divis 98.9 3.9E-09 8.5E-14 106.4 7.8 116 186-317 421-536 (638)
55 PRK12370 invasion protein regu 98.9 3.8E-08 8.3E-13 102.7 14.8 103 185-302 301-405 (553)
56 PRK12370 invasion protein regu 98.9 6.5E-08 1.4E-12 101.0 16.5 129 188-333 340-469 (553)
57 KOG1125 TPR repeat-containing 98.9 5.1E-09 1.1E-13 104.1 7.5 98 189-301 433-530 (579)
58 KOG4555 TPR repeat-containing 98.8 1.6E-07 3.6E-12 76.4 14.6 117 180-314 37-157 (175)
59 PRK11189 lipoprotein NlpI; Pro 98.8 8.2E-08 1.8E-12 92.2 15.3 106 199-316 39-144 (296)
60 COG3063 PilF Tfp pilus assembl 98.8 5.5E-08 1.2E-12 86.8 12.8 116 183-302 32-172 (250)
61 PF13371 TPR_9: Tetratricopept 98.8 2.1E-08 4.6E-13 74.8 8.7 67 242-309 2-68 (73)
62 PRK15179 Vi polysaccharide bio 98.8 4.6E-08 9.9E-13 103.4 14.4 115 186-316 86-200 (694)
63 TIGR02521 type_IV_pilW type IV 98.8 1.2E-07 2.7E-12 85.7 15.3 112 189-314 102-213 (234)
64 PRK09782 bacteriophage N4 rece 98.8 7.4E-08 1.6E-12 105.6 16.0 104 199-319 589-692 (987)
65 PRK15331 chaperone protein Sic 98.8 6.7E-08 1.4E-12 82.7 12.2 101 186-302 37-137 (165)
66 TIGR02552 LcrH_SycD type III s 98.8 6.2E-08 1.3E-12 81.3 11.7 111 207-334 4-114 (135)
67 TIGR02521 type_IV_pilW type IV 98.8 1.6E-07 3.5E-12 84.9 15.3 99 185-298 30-128 (234)
68 KOG1126 DNA-binding cell divis 98.8 7.4E-08 1.6E-12 97.3 13.0 119 187-321 490-608 (638)
69 PRK15174 Vi polysaccharide exp 98.8 1.1E-07 2.3E-12 101.2 14.5 105 193-313 219-327 (656)
70 PF14559 TPR_19: Tetratricopep 98.7 3.4E-08 7.4E-13 72.6 7.1 67 245-312 1-67 (68)
71 PRK10803 tol-pal system protei 98.7 2.3E-07 5E-12 87.0 14.5 107 190-309 146-256 (263)
72 KOG1155 Anaphase-promoting com 98.7 1E-07 2.3E-12 92.6 12.1 126 190-332 334-459 (559)
73 KOG0553 TPR repeat-containing 98.7 5.9E-08 1.3E-12 89.9 9.7 99 239-339 85-183 (304)
74 PRK15174 Vi polysaccharide exp 98.7 2E-07 4.4E-12 99.1 14.8 100 188-302 248-351 (656)
75 PLN02789 farnesyltranstransfer 98.7 3.3E-07 7.2E-12 88.5 14.9 112 187-314 72-186 (320)
76 PRK10866 outer membrane biogen 98.7 8E-07 1.7E-11 82.7 16.7 125 186-322 32-179 (243)
77 PRK15179 Vi polysaccharide bio 98.7 2.9E-07 6.3E-12 97.4 15.4 115 186-315 120-234 (694)
78 PF13512 TPR_18: Tetratricopep 98.7 3.1E-07 6.8E-12 76.9 12.3 105 186-302 10-132 (142)
79 COG5010 TadD Flp pilus assembl 98.7 3.2E-07 7E-12 83.5 13.1 115 187-317 101-215 (257)
80 KOG1155 Anaphase-promoting com 98.7 4.5E-07 9.8E-12 88.2 14.7 130 186-332 364-493 (559)
81 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 1E-07 2.2E-12 93.8 9.8 64 235-298 75-141 (453)
82 PF13525 YfiO: Outer membrane 98.7 6.5E-07 1.4E-11 81.1 14.4 124 186-321 5-144 (203)
83 PF13424 TPR_12: Tetratricopep 98.7 7.1E-08 1.5E-12 73.0 6.7 66 233-298 3-75 (78)
84 KOG0550 Molecular chaperone (D 98.6 4.9E-07 1.1E-11 86.9 13.1 114 185-302 202-320 (486)
85 PRK10049 pgaA outer membrane p 98.6 5.2E-07 1.1E-11 97.7 15.0 112 186-314 49-160 (765)
86 PRK11447 cellulose synthase su 98.6 5.5E-07 1.2E-11 101.9 15.5 123 186-313 303-428 (1157)
87 COG3063 PilF Tfp pilus assembl 98.6 6.5E-07 1.4E-11 80.1 12.5 104 186-302 103-206 (250)
88 PRK11788 tetratricopeptide rep 98.6 9.2E-07 2E-11 87.8 14.8 112 191-312 146-257 (389)
89 KOG1310 WD40 repeat protein [G 98.6 1.7E-07 3.6E-12 92.3 9.0 109 179-302 367-478 (758)
90 PF13432 TPR_16: Tetratricopep 98.6 1.4E-07 3E-12 68.7 6.1 64 191-269 2-65 (65)
91 TIGR02917 PEP_TPR_lipo putativ 98.6 1.2E-06 2.6E-11 95.4 15.9 113 185-313 124-236 (899)
92 PRK11447 cellulose synthase su 98.6 1.2E-06 2.6E-11 99.1 16.3 120 187-311 386-536 (1157)
93 PF13429 TPR_15: Tetratricopep 98.6 2.6E-07 5.6E-12 87.9 9.2 117 186-318 146-262 (280)
94 PLN02789 farnesyltranstransfer 98.5 1.7E-06 3.6E-11 83.7 14.5 108 196-319 47-157 (320)
95 TIGR02917 PEP_TPR_lipo putativ 98.5 1.5E-06 3.2E-11 94.7 15.9 129 188-335 705-833 (899)
96 PF06552 TOM20_plant: Plant sp 98.5 1.3E-06 2.7E-11 75.6 11.8 101 202-318 7-128 (186)
97 PF00254 FKBP_C: FKBP-type pep 98.5 9.4E-08 2E-12 75.3 4.4 42 2-43 51-94 (94)
98 cd00189 TPR Tetratricopeptide 98.5 2.3E-06 5E-11 65.0 12.2 82 237-319 2-83 (100)
99 TIGR03302 OM_YfiO outer membra 98.5 2.1E-06 4.5E-11 79.3 13.9 122 187-320 71-219 (235)
100 PRK11788 tetratricopeptide rep 98.5 2.7E-06 5.8E-11 84.5 15.5 131 187-335 181-312 (389)
101 KOG1840 Kinesin light chain [C 98.5 9.4E-07 2E-11 89.6 12.0 145 182-334 237-396 (508)
102 PLN03088 SGT1, suppressor of 98.5 1.4E-06 3E-11 85.8 12.8 82 238-320 5-86 (356)
103 CHL00033 ycf3 photosystem I as 98.5 3E-06 6.5E-11 74.2 13.5 110 192-315 5-117 (168)
104 PRK15363 pathogenicity island 98.5 1.8E-06 3.8E-11 73.7 11.3 97 236-334 36-132 (157)
105 KOG4162 Predicted calmodulin-b 98.5 9.1E-07 2E-11 90.8 11.0 102 186-302 684-787 (799)
106 PRK10049 pgaA outer membrane p 98.5 2.1E-06 4.6E-11 93.0 14.5 100 188-302 361-460 (765)
107 COG4785 NlpI Lipoprotein NlpI, 98.5 3E-07 6.5E-12 81.4 6.2 133 153-303 35-167 (297)
108 PF14559 TPR_19: Tetratricopep 98.4 5.5E-07 1.2E-11 66.1 6.1 67 196-277 1-67 (68)
109 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.6E-06 1E-10 67.7 11.8 100 236-336 3-107 (119)
110 PF09976 TPR_21: Tetratricopep 98.4 2.4E-06 5.3E-11 72.9 10.0 95 189-296 51-145 (145)
111 PF13424 TPR_12: Tetratricopep 98.4 8E-07 1.7E-11 67.2 6.1 72 185-264 4-75 (78)
112 KOG2002 TPR-containing nuclear 98.4 4.4E-06 9.4E-11 87.9 13.0 118 187-317 271-389 (1018)
113 PRK02603 photosystem I assembl 98.4 5.1E-06 1.1E-10 73.1 11.6 81 234-315 34-117 (172)
114 COG4235 Cytochrome c biogenesi 98.4 6.8E-06 1.5E-10 76.7 12.8 103 186-303 156-261 (287)
115 KOG2003 TPR repeat-containing 98.3 3.2E-06 7E-11 82.0 10.8 112 186-313 490-601 (840)
116 COG1729 Uncharacterized protei 98.3 6.4E-06 1.4E-10 76.0 12.1 106 186-303 141-249 (262)
117 PF13371 TPR_9: Tetratricopept 98.3 2.5E-06 5.5E-11 63.4 7.6 69 194-277 3-71 (73)
118 TIGR00115 tig trigger factor. 98.3 3.4E-06 7.3E-11 84.8 10.8 86 74-171 147-232 (408)
119 PRK10902 FKBP-type peptidyl-pr 98.3 6.1E-07 1.3E-11 84.0 5.0 45 2-46 205-249 (269)
120 KOG2076 RNA polymerase III tra 98.3 1.5E-05 3.3E-10 83.3 15.5 125 185-315 138-285 (895)
121 PF12688 TPR_5: Tetratrico pep 98.3 1.5E-05 3.2E-10 65.6 11.6 97 189-297 4-103 (120)
122 PF12968 DUF3856: Domain of Un 98.3 1.6E-05 3.5E-10 63.7 11.0 106 190-298 13-129 (144)
123 KOG1129 TPR repeat-containing 98.3 4.2E-06 9.1E-11 78.4 8.9 82 235-317 358-442 (478)
124 PRK14574 hmsH outer membrane p 98.2 2E-05 4.3E-10 85.1 14.6 149 186-341 34-205 (822)
125 PF00515 TPR_1: Tetratricopept 98.2 2.2E-06 4.7E-11 53.7 4.4 33 269-301 1-33 (34)
126 KOG2003 TPR repeat-containing 98.2 4E-06 8.8E-11 81.4 7.9 98 190-298 241-338 (840)
127 COG5010 TadD Flp pilus assembl 98.2 2.9E-05 6.4E-10 70.9 12.5 78 237-315 102-179 (257)
128 COG4783 Putative Zn-dependent 98.2 3.8E-05 8.3E-10 75.7 14.1 89 235-324 340-428 (484)
129 COG4783 Putative Zn-dependent 98.1 2.8E-05 6E-10 76.7 12.5 109 192-316 346-454 (484)
130 PRK01490 tig trigger factor; P 98.1 1.2E-05 2.5E-10 81.6 10.4 86 74-171 158-243 (435)
131 KOG1840 Kinesin light chain [C 98.1 1.7E-05 3.6E-10 80.6 11.1 109 184-299 281-397 (508)
132 KOG2076 RNA polymerase III tra 98.1 1.2E-05 2.7E-10 84.0 9.7 102 185-300 413-514 (895)
133 PRK14574 hmsH outer membrane p 98.1 3.7E-05 8.1E-10 83.1 13.4 101 200-317 116-216 (822)
134 KOG2002 TPR-containing nuclear 98.1 3E-05 6.5E-10 81.8 11.9 129 186-320 452-580 (1018)
135 cd05804 StaR_like StaR_like; a 98.1 3.4E-05 7.3E-10 75.7 11.9 112 187-302 44-181 (355)
136 PF07719 TPR_2: Tetratricopept 98.1 8.7E-06 1.9E-10 50.8 5.0 34 269-302 1-34 (34)
137 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 4.2E-05 9.1E-10 75.6 12.2 69 185-265 74-142 (453)
138 PRK10803 tol-pal system protei 98.1 4.6E-05 1E-09 71.6 11.9 102 236-338 143-250 (263)
139 KOG4151 Myosin assembly protei 98.0 1.5E-05 3.2E-10 82.7 8.4 115 177-302 44-160 (748)
140 PF13431 TPR_17: Tetratricopep 98.0 6.3E-06 1.4E-10 51.7 3.6 33 258-290 2-34 (34)
141 PF03704 BTAD: Bacterial trans 98.0 0.0003 6.5E-09 59.9 15.3 109 189-297 9-124 (146)
142 PF15015 NYD-SP12_N: Spermatog 98.0 3.9E-05 8.4E-10 74.1 10.4 113 185-298 175-291 (569)
143 KOG1128 Uncharacterized conser 98.0 3.3E-05 7.2E-10 79.3 10.4 113 190-318 489-601 (777)
144 cd05804 StaR_like StaR_like; a 98.0 5.1E-05 1.1E-09 74.4 11.5 99 187-300 115-217 (355)
145 PF00515 TPR_1: Tetratricopept 98.0 1.3E-05 2.9E-10 50.1 4.6 33 236-268 2-34 (34)
146 PRK10153 DNA-binding transcrip 98.0 0.00011 2.5E-09 75.6 14.0 113 186-303 339-487 (517)
147 COG2956 Predicted N-acetylgluc 98.0 0.00013 2.9E-09 68.4 12.9 141 176-319 100-264 (389)
148 PF13429 TPR_15: Tetratricopep 98.0 3.6E-05 7.9E-10 73.1 9.6 118 190-321 114-231 (280)
149 PF12895 Apc3: Anaphase-promot 98.0 2.4E-05 5.1E-10 60.1 6.4 74 248-323 2-77 (84)
150 PRK11906 transcriptional regul 97.9 0.00016 3.5E-09 71.6 13.4 77 235-312 295-380 (458)
151 KOG1125 TPR repeat-containing 97.9 7.9E-05 1.7E-09 74.8 10.8 91 235-326 430-520 (579)
152 TIGR00540 hemY_coli hemY prote 97.9 0.0006 1.3E-08 68.6 16.9 115 180-298 78-216 (409)
153 PF14938 SNAP: Soluble NSF att 97.9 9.6E-05 2.1E-09 70.4 10.4 109 185-302 113-229 (282)
154 PRK14720 transcript cleavage f 97.9 0.00021 4.5E-09 77.1 13.8 109 188-314 33-160 (906)
155 PRK10747 putative protoheme IX 97.9 0.00067 1.4E-08 68.0 16.6 121 181-317 79-200 (398)
156 PF09976 TPR_21: Tetratricopep 97.8 0.0011 2.3E-08 56.5 15.3 100 183-294 8-110 (145)
157 KOG1174 Anaphase-promoting com 97.8 0.0004 8.6E-09 67.3 13.6 134 186-337 334-503 (564)
158 PF13428 TPR_14: Tetratricopep 97.8 5E-05 1.1E-09 50.6 5.5 40 270-310 2-41 (44)
159 COG0544 Tig FKBP-type peptidyl 97.8 6.4E-05 1.4E-09 75.4 8.6 84 75-172 159-244 (441)
160 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 0.00013 2.9E-09 50.5 7.6 48 270-318 2-49 (53)
161 COG4105 ComL DNA uptake lipopr 97.8 0.0017 3.6E-08 59.7 16.3 124 186-321 34-170 (254)
162 KOG4234 TPR repeat-containing 97.8 0.00068 1.5E-08 59.7 12.8 97 241-339 101-202 (271)
163 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00015 3.3E-09 71.7 10.0 60 235-294 234-293 (395)
164 KOG1130 Predicted G-alpha GTPa 97.8 4.3E-05 9.2E-10 73.8 5.9 111 180-299 189-305 (639)
165 COG1729 Uncharacterized protei 97.8 0.00035 7.6E-09 64.6 11.6 101 238-339 144-249 (262)
166 KOG1129 TPR repeat-containing 97.7 0.00017 3.6E-09 67.9 9.4 96 191-302 228-323 (478)
167 PF13428 TPR_14: Tetratricopep 97.7 8.6E-05 1.9E-09 49.4 5.4 42 237-278 3-44 (44)
168 PRK11906 transcriptional regul 97.7 0.00029 6.2E-09 69.9 11.1 87 201-302 319-405 (458)
169 KOG4648 Uncharacterized conser 97.7 8.6E-05 1.9E-09 70.2 6.9 63 239-301 101-163 (536)
170 PF12688 TPR_5: Tetratrico pep 97.7 0.00087 1.9E-08 55.1 12.0 66 236-301 2-70 (120)
171 KOG1173 Anaphase-promoting com 97.7 0.00018 4E-09 72.0 9.4 132 186-318 346-503 (611)
172 PF14938 SNAP: Soluble NSF att 97.7 0.00014 3.1E-09 69.3 8.0 106 183-298 32-144 (282)
173 PF07719 TPR_2: Tetratricopept 97.6 0.00013 2.8E-09 45.3 5.0 33 236-268 2-34 (34)
174 COG4700 Uncharacterized protei 97.6 0.0022 4.7E-08 56.0 13.7 102 187-302 90-193 (251)
175 KOG3060 Uncharacterized conser 97.6 0.00091 2E-08 61.0 11.9 122 192-318 92-239 (289)
176 PF13181 TPR_8: Tetratricopept 97.6 0.00011 2.4E-09 45.7 4.2 32 270-301 2-33 (34)
177 KOG1156 N-terminal acetyltrans 97.6 0.00052 1.1E-08 69.9 10.7 115 189-319 10-124 (700)
178 KOG1128 Uncharacterized conser 97.6 0.00027 5.9E-09 72.8 8.7 84 236-320 486-569 (777)
179 COG2956 Predicted N-acetylgluc 97.6 0.0023 5.1E-08 60.3 14.1 116 182-314 176-292 (389)
180 TIGR00540 hemY_coli hemY prote 97.6 0.00089 1.9E-08 67.3 12.3 119 186-319 263-385 (409)
181 PF13525 YfiO: Outer membrane 97.6 0.0019 4.1E-08 58.4 13.3 69 235-303 5-76 (203)
182 PRK10747 putative protoheme IX 97.5 0.0032 6.9E-08 63.1 15.6 100 191-304 123-222 (398)
183 PF12569 NARP1: NMDA receptor- 97.5 0.0015 3.3E-08 67.1 13.3 68 235-302 194-261 (517)
184 KOG1174 Anaphase-promoting com 97.5 0.0014 3E-08 63.7 11.9 113 186-302 232-367 (564)
185 PRK10941 hypothetical protein; 97.5 0.0014 3.1E-08 61.5 11.9 74 232-306 178-251 (269)
186 PRK10866 outer membrane biogen 97.5 0.002 4.3E-08 60.0 12.7 69 235-303 32-103 (243)
187 COG4235 Cytochrome c biogenesi 97.5 0.0043 9.3E-08 58.2 14.8 125 201-342 137-264 (287)
188 KOG4555 TPR repeat-containing 97.4 0.00092 2E-08 54.9 8.3 61 241-301 49-109 (175)
189 KOG3060 Uncharacterized conser 97.4 0.0041 9E-08 56.8 13.3 51 235-285 188-241 (289)
190 KOG4507 Uncharacterized conser 97.4 0.00075 1.6E-08 68.0 9.0 111 189-314 610-720 (886)
191 PRK14720 transcript cleavage f 97.4 0.0011 2.4E-08 71.6 10.9 62 236-298 117-178 (906)
192 KOG1130 Predicted G-alpha GTPa 97.4 0.0015 3.3E-08 63.4 10.5 103 187-298 236-344 (639)
193 PF04733 Coatomer_E: Coatomer 97.4 0.00098 2.1E-08 63.7 9.3 80 237-317 165-248 (290)
194 PF13512 TPR_18: Tetratricopep 97.3 0.0058 1.3E-07 51.4 12.1 69 235-303 10-81 (142)
195 PF04733 Coatomer_E: Coatomer 97.3 0.0015 3.2E-08 62.4 9.6 87 201-302 182-269 (290)
196 COG4785 NlpI Lipoprotein NlpI, 97.3 0.00072 1.6E-08 60.3 6.7 72 232-303 62-133 (297)
197 KOG4642 Chaperone-dependent E3 97.3 0.0006 1.3E-08 61.6 6.0 73 241-314 16-88 (284)
198 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0016 3.4E-08 45.1 6.6 39 237-275 3-41 (53)
199 KOG4162 Predicted calmodulin-b 97.2 0.0035 7.5E-08 65.2 11.7 115 191-321 655-771 (799)
200 KOG1156 N-terminal acetyltrans 97.2 0.0039 8.5E-08 63.7 11.6 97 188-299 77-173 (700)
201 KOG4340 Uncharacterized conser 97.2 0.0021 4.4E-08 60.1 8.7 92 186-292 144-264 (459)
202 KOG1127 TPR repeat-containing 97.1 0.0022 4.7E-08 68.4 9.2 77 238-315 565-641 (1238)
203 KOG1127 TPR repeat-containing 97.1 0.002 4.3E-08 68.6 8.9 98 188-300 564-661 (1238)
204 PF13181 TPR_8: Tetratricopept 97.1 0.00095 2.1E-08 41.4 4.2 33 236-268 2-34 (34)
205 PRK15331 chaperone protein Sic 97.1 0.012 2.5E-07 50.8 11.8 81 237-318 39-119 (165)
206 COG2976 Uncharacterized protei 97.0 0.01 2.2E-07 52.3 11.1 100 188-302 91-192 (207)
207 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.015 3.2E-07 57.8 13.7 107 199-324 182-288 (395)
208 PF13174 TPR_6: Tetratricopept 97.0 0.0013 2.7E-08 40.4 4.1 31 271-301 2-32 (33)
209 KOG3364 Membrane protein invol 97.0 0.0097 2.1E-07 49.2 9.8 83 235-318 32-119 (149)
210 KOG0495 HAT repeat protein [RN 97.0 0.012 2.5E-07 60.5 12.5 122 191-317 589-732 (913)
211 smart00028 TPR Tetratricopepti 96.9 0.0017 3.7E-08 38.5 3.9 32 270-301 2-33 (34)
212 KOG4814 Uncharacterized conser 96.9 0.0056 1.2E-07 62.5 9.5 103 187-298 355-457 (872)
213 PF13431 TPR_17: Tetratricopep 96.9 0.001 2.3E-08 41.5 2.9 33 208-255 1-33 (34)
214 KOG2796 Uncharacterized conser 96.9 0.017 3.7E-07 53.2 11.6 114 189-302 180-319 (366)
215 KOG0551 Hsp90 co-chaperone CNS 96.7 0.016 3.5E-07 55.0 10.4 67 237-303 83-153 (390)
216 KOG3785 Uncharacterized conser 96.7 0.0071 1.5E-07 57.8 8.0 108 192-315 63-196 (557)
217 KOG0376 Serine-threonine phosp 96.7 0.0024 5.2E-08 63.3 5.1 66 237-302 6-71 (476)
218 KOG3785 Uncharacterized conser 96.6 0.011 2.5E-07 56.4 9.0 87 195-295 31-117 (557)
219 PF13176 TPR_7: Tetratricopept 96.6 0.0041 8.9E-08 39.3 4.3 29 271-299 1-29 (36)
220 PF09986 DUF2225: Uncharacteri 96.6 0.058 1.3E-06 49.1 13.4 102 193-302 84-198 (214)
221 KOG0549 FKBP-type peptidyl-pro 96.6 0.0019 4.1E-08 55.9 3.3 40 110-149 1-40 (188)
222 KOG1941 Acetylcholine receptor 96.6 0.015 3.3E-07 55.8 9.5 118 185-302 5-155 (518)
223 COG4976 Predicted methyltransf 96.5 0.0042 9.2E-08 55.9 5.3 60 244-303 4-63 (287)
224 PF10300 DUF3808: Protein of u 96.5 0.018 3.8E-07 58.9 10.3 99 189-299 270-377 (468)
225 KOG2376 Signal recognition par 96.4 0.064 1.4E-06 54.6 13.3 121 187-314 13-156 (652)
226 PF06552 TOM20_plant: Plant sp 96.4 0.027 6E-07 49.1 9.4 63 251-314 7-79 (186)
227 PF12569 NARP1: NMDA receptor- 96.4 0.033 7.2E-07 57.4 11.6 77 237-314 6-82 (517)
228 KOG2376 Signal recognition par 96.4 0.14 3.1E-06 52.2 15.3 131 191-339 84-258 (652)
229 PF13174 TPR_6: Tetratricopept 96.3 0.0068 1.5E-07 37.0 4.0 32 237-268 2-33 (33)
230 smart00028 TPR Tetratricopepti 96.3 0.0069 1.5E-07 35.7 4.0 33 236-268 2-34 (34)
231 KOG1941 Acetylcholine receptor 96.3 0.01 2.2E-07 56.9 6.8 99 191-298 127-235 (518)
232 PF13176 TPR_7: Tetratricopept 96.3 0.0075 1.6E-07 38.1 4.1 29 237-265 1-29 (36)
233 KOG0545 Aryl-hydrocarbon recep 96.2 0.028 6.1E-07 51.3 8.7 98 235-335 178-294 (329)
234 COG0457 NrfG FOG: TPR repeat [ 96.2 0.075 1.6E-06 46.2 11.7 95 195-301 139-234 (291)
235 KOG3824 Huntingtin interacting 96.2 0.025 5.3E-07 53.2 8.4 68 236-303 117-184 (472)
236 COG3071 HemY Uncharacterized e 96.2 0.18 3.9E-06 49.1 14.5 118 181-314 79-197 (400)
237 PF14561 TPR_20: Tetratricopep 96.0 0.049 1.1E-06 42.3 8.3 65 254-318 7-72 (90)
238 KOG1586 Protein required for f 96.0 0.14 3.1E-06 46.5 12.0 103 191-302 118-228 (288)
239 COG0457 NrfG FOG: TPR repeat [ 95.9 0.085 1.9E-06 45.8 10.7 102 185-301 94-199 (291)
240 COG4105 ComL DNA uptake lipopr 95.9 0.063 1.4E-06 49.5 9.6 69 235-303 34-105 (254)
241 PF04781 DUF627: Protein of un 95.8 0.059 1.3E-06 43.2 7.8 103 192-299 2-108 (111)
242 COG2912 Uncharacterized conser 95.7 0.1 2.2E-06 48.6 10.3 71 232-302 178-248 (269)
243 PF08631 SPO22: Meiosis protei 95.7 0.3 6.4E-06 46.4 13.8 123 176-300 25-152 (278)
244 KOG1308 Hsp70-interacting prot 95.6 0.0041 8.9E-08 59.2 0.7 59 245-303 124-182 (377)
245 KOG2396 HAT (Half-A-TPR) repea 95.6 0.69 1.5E-05 46.6 16.0 110 202-327 87-197 (568)
246 PF10602 RPN7: 26S proteasome 95.5 0.17 3.6E-06 44.7 10.4 102 186-299 36-143 (177)
247 COG3118 Thioredoxin domain-con 95.4 0.56 1.2E-05 44.2 14.0 111 189-314 137-282 (304)
248 KOG0495 HAT repeat protein [RN 95.4 0.19 4E-06 52.0 11.5 122 198-337 663-785 (913)
249 PRK10153 DNA-binding transcrip 95.4 0.059 1.3E-06 55.7 8.3 66 189-270 423-488 (517)
250 PF10952 DUF2753: Protein of u 95.3 0.21 4.5E-06 40.7 9.4 115 189-311 4-123 (140)
251 KOG4340 Uncharacterized conser 95.3 0.17 3.6E-06 47.7 10.1 83 198-295 22-104 (459)
252 PRK04841 transcriptional regul 95.3 0.12 2.6E-06 57.3 11.0 65 235-299 531-603 (903)
253 PF13374 TPR_10: Tetratricopep 95.3 0.041 8.9E-07 35.3 4.5 30 235-264 2-31 (42)
254 PLN03081 pentatricopeptide (PP 95.2 0.15 3.3E-06 54.9 11.2 112 186-298 426-557 (697)
255 KOG2053 Mitochondrial inherita 95.0 0.49 1.1E-05 50.6 13.6 112 196-325 19-131 (932)
256 KOG3081 Vesicle coat complex C 94.9 0.3 6.5E-06 45.3 10.5 77 239-316 173-253 (299)
257 PRK04841 transcriptional regul 94.9 0.2 4.4E-06 55.5 11.6 64 236-299 574-642 (903)
258 KOG3824 Huntingtin interacting 94.7 0.075 1.6E-06 50.1 6.2 84 183-281 113-196 (472)
259 PRK15095 FKBP-type peptidyl-pr 94.7 0.033 7.1E-07 48.1 3.7 24 2-25 51-74 (156)
260 PF10579 Rapsyn_N: Rapsyn N-te 94.7 0.18 4E-06 37.7 7.0 68 185-264 5-72 (80)
261 KOG2471 TPR repeat-containing 94.7 0.11 2.3E-06 52.0 7.4 95 186-282 283-382 (696)
262 KOG2471 TPR repeat-containing 94.6 0.059 1.3E-06 53.7 5.5 118 189-313 243-378 (696)
263 PF10516 SHNi-TPR: SHNi-TPR; 94.4 0.076 1.7E-06 34.0 3.8 30 270-299 2-31 (38)
264 COG3071 HemY Uncharacterized e 94.0 0.75 1.6E-05 44.9 11.4 107 190-316 267-373 (400)
265 PF04184 ST7: ST7 protein; In 93.9 0.45 9.8E-06 47.9 10.0 123 174-296 179-322 (539)
266 PF13374 TPR_10: Tetratricopep 93.9 0.14 3.1E-06 32.7 4.6 30 269-298 2-31 (42)
267 KOG1585 Protein required for f 93.8 0.5 1.1E-05 43.3 9.2 131 191-333 115-251 (308)
268 KOG4507 Uncharacterized conser 93.8 0.28 6E-06 50.1 8.3 101 191-304 217-318 (886)
269 KOG2610 Uncharacterized conser 93.7 0.51 1.1E-05 45.2 9.5 107 187-293 104-233 (491)
270 PLN03218 maturation of RBCL 1; 93.7 0.84 1.8E-05 51.4 12.9 62 237-298 581-643 (1060)
271 PF03704 BTAD: Bacterial trans 93.5 1.6 3.4E-05 36.7 11.6 75 241-316 12-108 (146)
272 COG4700 Uncharacterized protei 93.4 0.83 1.8E-05 40.3 9.6 66 236-301 90-156 (251)
273 PF07079 DUF1347: Protein of u 93.4 2 4.4E-05 42.9 13.4 72 242-317 469-543 (549)
274 KOG1915 Cell cycle control pro 93.4 1.6 3.5E-05 43.7 12.6 99 189-302 76-174 (677)
275 KOG3081 Vesicle coat complex C 93.3 1.8 3.8E-05 40.4 12.0 88 200-302 187-275 (299)
276 PLN03077 Protein ECB2; Provisi 93.3 1.4 3.1E-05 48.7 13.9 53 244-296 666-718 (857)
277 PF08631 SPO22: Meiosis protei 93.2 3.3 7.2E-05 39.2 14.6 100 196-302 3-120 (278)
278 PF12862 Apc5: Anaphase-promot 93.1 0.5 1.1E-05 36.8 7.3 56 245-300 8-72 (94)
279 PF05843 Suf: Suppressor of fo 93.1 1.5 3.2E-05 41.7 11.9 89 199-302 14-103 (280)
280 PF06957 COPI_C: Coatomer (COP 92.9 0.41 8.8E-06 47.8 8.0 117 186-302 204-333 (422)
281 KOG1915 Cell cycle control pro 92.9 1.6 3.5E-05 43.8 11.8 99 185-299 403-501 (677)
282 COG3947 Response regulator con 92.7 0.71 1.5E-05 43.4 8.7 72 224-295 268-339 (361)
283 PF02259 FAT: FAT domain; Int 92.6 1 2.2E-05 43.8 10.5 111 191-301 189-341 (352)
284 PF12968 DUF3856: Domain of Un 92.6 0.7 1.5E-05 37.6 7.4 75 186-264 55-129 (144)
285 KOG1586 Protein required for f 92.6 3 6.4E-05 38.2 12.1 98 193-300 41-145 (288)
286 PLN03218 maturation of RBCL 1; 92.5 2.7 5.8E-05 47.5 14.5 61 237-297 651-712 (1060)
287 KOG4814 Uncharacterized conser 92.3 1.5 3.3E-05 45.4 11.1 67 236-302 355-427 (872)
288 PF12862 Apc5: Anaphase-promot 92.0 0.71 1.5E-05 36.0 6.9 64 196-265 8-71 (94)
289 PLN03081 pentatricopeptide (PP 92.0 0.74 1.6E-05 49.7 9.4 110 188-302 292-426 (697)
290 COG3629 DnrI DNA-binding trans 91.8 1.4 3.1E-05 41.5 9.8 72 227-298 145-216 (280)
291 KOG0686 COP9 signalosome, subu 91.6 0.66 1.4E-05 45.5 7.3 96 189-296 153-256 (466)
292 PRK10737 FKBP-type peptidyl-pr 91.3 0.26 5.5E-06 44.1 4.1 24 2-25 48-71 (196)
293 KOG1585 Protein required for f 91.2 5.5 0.00012 36.8 12.3 104 186-298 31-139 (308)
294 PRK10941 hypothetical protein; 90.8 1.6 3.4E-05 41.3 9.0 76 189-279 184-259 (269)
295 COG2976 Uncharacterized protei 90.8 2.2 4.7E-05 37.9 9.1 103 193-295 38-152 (207)
296 PF04184 ST7: ST7 protein; In 90.6 2.2 4.9E-05 43.1 10.1 52 269-320 259-311 (539)
297 PLN03077 Protein ECB2; Provisi 90.5 3 6.4E-05 46.2 12.5 121 188-313 556-700 (857)
298 PF02259 FAT: FAT domain; Int 90.1 7.2 0.00016 37.7 13.6 121 185-317 145-305 (352)
299 PHA02537 M terminase endonucle 90.1 6.1 0.00013 36.2 11.9 118 197-319 94-226 (230)
300 PF07720 TPR_3: Tetratricopept 90.1 1.1 2.3E-05 28.3 5.0 33 270-302 2-36 (36)
301 KOG1070 rRNA processing protei 89.9 5.4 0.00012 45.2 13.1 66 236-301 1531-1596(1710)
302 KOG3364 Membrane protein invol 89.9 0.73 1.6E-05 38.3 5.1 40 236-275 72-111 (149)
303 COG4976 Predicted methyltransf 89.8 0.66 1.4E-05 42.2 5.2 59 195-268 4-62 (287)
304 KOG2796 Uncharacterized conser 89.6 10 0.00022 35.5 12.7 79 235-314 212-296 (366)
305 PF07721 TPR_4: Tetratricopept 89.4 0.54 1.2E-05 27.1 3.0 24 270-293 2-25 (26)
306 PF10255 Paf67: RNA polymerase 88.9 1.8 3.9E-05 43.1 8.1 100 234-334 163-266 (404)
307 PF10300 DUF3808: Protein of u 88.8 7.3 0.00016 39.9 12.8 67 235-301 267-337 (468)
308 PRK13184 pknD serine/threonine 88.4 5.1 0.00011 44.4 11.8 107 193-313 482-595 (932)
309 PF09986 DUF2225: Uncharacteri 88.4 3.5 7.6E-05 37.5 9.1 85 185-278 124-209 (214)
310 TIGR03504 FimV_Cterm FimV C-te 88.1 2.1 4.5E-05 28.3 5.5 25 273-297 3-27 (44)
311 PF04910 Tcf25: Transcriptiona 87.9 4.4 9.5E-05 40.0 10.1 102 199-303 7-137 (360)
312 KOG2422 Uncharacterized conser 87.8 9.1 0.0002 39.5 12.2 110 117-267 257-374 (665)
313 PF09613 HrpB1_HrpK: Bacterial 87.8 9.8 0.00021 32.8 10.9 82 235-317 10-91 (160)
314 cd02683 MIT_1 MIT: domain cont 87.8 1.2 2.6E-05 33.4 4.8 34 185-218 5-38 (77)
315 COG1047 SlpA FKBP-type peptidy 87.6 0.69 1.5E-05 40.3 3.8 25 2-26 49-73 (174)
316 cd02682 MIT_AAA_Arch MIT: doma 87.3 2.1 4.6E-05 31.9 5.7 35 184-218 4-38 (75)
317 KOG0292 Vesicle coat complex C 87.0 3.8 8.2E-05 44.2 9.3 120 183-302 988-1117(1202)
318 cd02681 MIT_calpain7_1 MIT: do 86.8 2.3 5E-05 31.8 5.7 35 184-218 4-38 (76)
319 KOG2300 Uncharacterized conser 86.6 9.5 0.00021 38.6 11.4 98 186-299 367-475 (629)
320 cd02684 MIT_2 MIT: domain cont 86.6 1.7 3.6E-05 32.4 4.9 36 183-218 3-38 (75)
321 COG3898 Uncharacterized membra 86.6 7.6 0.00017 38.3 10.5 74 234-310 229-302 (531)
322 COG3914 Spy Predicted O-linked 86.4 11 0.00023 39.1 11.9 103 195-313 76-185 (620)
323 PF14561 TPR_20: Tetratricopep 85.8 8.6 0.00019 29.7 8.7 48 206-268 8-55 (90)
324 COG5191 Uncharacterized conser 85.7 2.4 5.1E-05 40.4 6.4 78 235-313 107-185 (435)
325 cd02677 MIT_SNX15 MIT: domain 85.2 2.2 4.9E-05 31.8 5.0 36 183-218 3-38 (75)
326 cd02656 MIT MIT: domain contai 85.2 2.5 5.4E-05 31.3 5.3 36 183-218 3-38 (75)
327 PF10516 SHNi-TPR: SHNi-TPR; 85.0 1.9 4.2E-05 27.5 3.9 29 237-265 3-31 (38)
328 KOG1550 Extracellular protein 85.0 8.5 0.00018 40.4 11.0 91 191-300 293-395 (552)
329 PF04910 Tcf25: Transcriptiona 84.1 10 0.00022 37.4 10.6 78 186-267 40-135 (360)
330 cd02678 MIT_VPS4 MIT: domain c 83.7 2.5 5.3E-05 31.4 4.7 36 183-218 3-38 (75)
331 PF11817 Foie-gras_1: Foie gra 83.1 2.9 6.3E-05 38.9 6.0 59 235-293 178-242 (247)
332 PF10373 EST1_DNA_bind: Est1 D 82.8 5.9 0.00013 37.0 8.2 62 254-316 1-62 (278)
333 PF10345 Cohesin_load: Cohesin 82.2 16 0.00035 38.8 11.9 127 186-312 301-455 (608)
334 PF14863 Alkyl_sulf_dimr: Alky 82.1 4.5 9.7E-05 34.2 6.2 49 237-285 72-120 (141)
335 PF07721 TPR_4: Tetratricopept 81.5 2.3 5E-05 24.4 3.0 23 237-259 3-25 (26)
336 cd02680 MIT_calpain7_2 MIT: do 81.4 4.6 9.9E-05 30.1 5.3 35 184-218 4-38 (75)
337 PF10602 RPN7: 26S proteasome 81.0 38 0.00082 29.7 12.6 65 235-299 36-103 (177)
338 PF10255 Paf67: RNA polymerase 80.8 2.6 5.6E-05 42.0 4.9 59 238-297 125-192 (404)
339 TIGR03504 FimV_Cterm FimV C-te 80.5 3.2 6.9E-05 27.4 3.7 26 239-264 3-28 (44)
340 smart00745 MIT Microtubule Int 80.3 7.2 0.00016 28.9 6.2 36 183-218 5-40 (77)
341 KOG2053 Mitochondrial inherita 80.2 9.6 0.00021 41.3 9.0 96 192-303 49-144 (932)
342 KOG1463 26S proteasome regulat 80.2 26 0.00057 34.0 11.1 120 186-318 209-332 (411)
343 PF04212 MIT: MIT (microtubule 80.0 2 4.4E-05 31.2 3.0 35 183-217 2-36 (69)
344 PF13281 DUF4071: Domain of un 79.8 11 0.00024 37.2 8.9 66 237-302 181-259 (374)
345 PF09613 HrpB1_HrpK: Bacterial 79.8 28 0.0006 30.0 10.3 110 186-313 10-119 (160)
346 COG3118 Thioredoxin domain-con 79.3 10 0.00022 36.0 8.1 54 241-294 140-193 (304)
347 COG3898 Uncharacterized membra 79.2 16 0.00035 36.1 9.5 103 192-316 269-374 (531)
348 PF14863 Alkyl_sulf_dimr: Alky 79.0 21 0.00045 30.2 9.2 52 267-319 68-119 (141)
349 KOG1839 Uncharacterized protei 78.8 5.9 0.00013 44.6 7.3 107 185-298 972-1086(1236)
350 PF05843 Suf: Suppressor of fo 78.8 21 0.00045 33.8 10.4 66 238-303 4-70 (280)
351 PF07720 TPR_3: Tetratricopept 78.8 6.1 0.00013 24.8 4.5 31 238-268 4-36 (36)
352 COG3914 Spy Predicted O-linked 77.5 28 0.0006 36.2 11.0 69 241-310 73-142 (620)
353 cd02682 MIT_AAA_Arch MIT: doma 77.4 14 0.00031 27.5 6.8 17 286-302 30-46 (75)
354 PF10373 EST1_DNA_bind: Est1 D 77.0 9 0.00019 35.8 7.3 62 205-281 1-62 (278)
355 PF09670 Cas_Cas02710: CRISPR- 76.8 32 0.00069 34.2 11.4 66 185-263 130-197 (379)
356 PF11817 Foie-gras_1: Foie gra 76.7 26 0.00056 32.5 10.1 28 271-298 180-207 (247)
357 KOG1070 rRNA processing protei 76.5 21 0.00046 40.8 10.5 109 179-302 1520-1633(1710)
358 PF00244 14-3-3: 14-3-3 protei 75.8 9.4 0.0002 35.3 6.8 53 202-262 142-196 (236)
359 COG4455 ImpE Protein of avirul 75.6 31 0.00067 31.5 9.6 64 244-307 10-73 (273)
360 KOG1839 Uncharacterized protei 75.1 11 0.00024 42.5 8.1 107 184-298 930-1044(1236)
361 KOG1310 WD40 repeat protein [G 74.8 11 0.00024 38.6 7.3 72 249-321 388-462 (758)
362 COG0790 FOG: TPR repeat, SEL1 72.8 67 0.0015 30.1 12.2 80 203-302 172-270 (292)
363 PF13281 DUF4071: Domain of un 72.8 46 0.001 32.9 11.1 102 235-336 141-257 (374)
364 COG0790 FOG: TPR repeat, SEL1 72.7 50 0.0011 31.0 11.3 86 199-300 126-222 (292)
365 PF09205 DUF1955: Domain of un 72.1 54 0.0012 27.6 9.5 62 237-298 87-149 (161)
366 KOG0985 Vesicle coat protein c 72.0 8.3 0.00018 42.5 6.0 100 188-316 1196-1325(1666)
367 PF15015 NYD-SP12_N: Spermatog 71.8 29 0.00063 34.7 9.2 84 242-326 183-284 (569)
368 TIGR02561 HrpB1_HrpK type III 71.6 60 0.0013 27.7 9.9 80 237-317 12-91 (153)
369 KOG1550 Extracellular protein 71.2 32 0.00069 36.1 10.3 74 237-315 290-371 (552)
370 KOG2422 Uncharacterized conser 70.2 67 0.0015 33.5 11.6 109 190-301 239-374 (665)
371 KOG2300 Uncharacterized conser 70.1 48 0.001 33.8 10.4 100 185-292 45-150 (629)
372 PF10579 Rapsyn_N: Rapsyn N-te 70.0 44 0.00095 25.2 7.8 56 241-296 12-70 (80)
373 PF04781 DUF627: Protein of un 69.6 58 0.0013 26.2 10.2 62 241-302 2-77 (111)
374 TIGR02710 CRISPR-associated pr 69.4 52 0.0011 32.7 10.6 64 186-259 130-195 (380)
375 cd02679 MIT_spastin MIT: domai 69.2 29 0.00064 26.1 6.9 35 183-217 5-39 (79)
376 KOG2041 WD40 repeat protein [G 66.6 16 0.00035 38.7 6.5 29 266-294 849-877 (1189)
377 KOG2581 26S proteasome regulat 66.6 23 0.00049 35.2 7.2 67 236-302 210-280 (493)
378 KOG1464 COP9 signalosome, subu 65.5 19 0.00041 33.9 6.2 52 246-297 38-93 (440)
379 COG2912 Uncharacterized conser 65.0 20 0.00042 33.7 6.3 70 194-278 189-258 (269)
380 TIGR00115 tig trigger factor. 64.9 10 0.00023 38.0 5.0 41 2-46 190-230 (408)
381 COG4941 Predicted RNA polymera 63.9 67 0.0015 31.2 9.7 66 237-302 331-398 (415)
382 PF11846 DUF3366: Domain of un 63.3 29 0.00063 30.7 7.1 51 251-302 127-177 (193)
383 KOG0739 AAA+-type ATPase [Post 61.9 36 0.00079 32.6 7.5 36 182-217 6-41 (439)
384 KOG2047 mRNA splicing factor [ 60.9 59 0.0013 34.4 9.3 115 182-301 421-582 (835)
385 COG4649 Uncharacterized protei 59.5 46 0.00099 29.3 7.1 97 189-297 97-195 (221)
386 KOG2561 Adaptor protein NUB1, 59.1 41 0.00089 33.8 7.5 112 183-298 160-296 (568)
387 COG5091 SGT1 Suppressor of G2 58.9 46 0.00099 31.2 7.4 124 193-323 2-131 (368)
388 PF04053 Coatomer_WDAD: Coatom 58.1 33 0.00072 34.9 7.2 75 201-288 324-408 (443)
389 KOG3617 WD40 and TPR repeat-co 58.1 2.5E+02 0.0054 31.0 13.4 64 198-261 1092-1171(1416)
390 COG2909 MalT ATP-dependent tra 57.9 2.8E+02 0.0061 30.6 14.0 104 190-299 419-527 (894)
391 PF11207 DUF2989: Protein of u 57.4 91 0.002 28.0 8.9 53 236-289 142-198 (203)
392 PF08424 NRDE-2: NRDE-2, neces 57.0 1.5E+02 0.0034 28.5 11.4 82 202-298 47-131 (321)
393 PF10345 Cohesin_load: Cohesin 56.8 2.7E+02 0.0058 29.6 14.3 105 185-299 58-169 (608)
394 smart00101 14_3_3 14-3-3 homol 56.6 40 0.00086 31.3 6.8 53 202-262 144-198 (244)
395 smart00745 MIT Microtubule Int 56.5 57 0.0012 23.9 6.6 14 288-301 34-47 (77)
396 KOG0499 Cyclic nucleotide-gate 55.7 56 0.0012 34.1 8.1 52 251-302 627-685 (815)
397 KOG0985 Vesicle coat protein c 55.1 1.5E+02 0.0033 33.3 11.5 101 192-298 1054-1162(1666)
398 KOG3617 WD40 and TPR repeat-co 55.1 30 0.00065 37.6 6.3 43 248-295 951-993 (1416)
399 cd02683 MIT_1 MIT: domain cont 53.8 90 0.002 23.2 9.0 30 273-302 10-46 (77)
400 PF04053 Coatomer_WDAD: Coatom 52.9 16 0.00035 37.1 3.9 47 246-297 329-375 (443)
401 KOG0546 HSP90 co-chaperone CPR 51.9 13 0.00028 36.1 2.9 48 235-282 309-356 (372)
402 PF11207 DUF2989: Protein of u 51.6 32 0.00069 30.9 5.1 57 188-256 143-199 (203)
403 cd09034 BRO1_Alix_like Protein 51.0 1.2E+02 0.0025 29.5 9.7 30 269-298 251-280 (345)
404 PF08238 Sel1: Sel1 repeat; I 50.3 38 0.00082 20.7 4.1 30 269-298 1-37 (39)
405 TIGR02561 HrpB1_HrpK type III 49.2 1.7E+02 0.0037 25.0 9.0 74 237-313 46-119 (153)
406 smart00671 SEL1 Sel1-like repe 49.2 42 0.00092 20.0 4.1 29 270-298 2-34 (36)
407 KOG2047 mRNA splicing factor [ 49.1 2.7E+02 0.0058 29.8 11.7 99 237-337 552-654 (835)
408 PF10952 DUF2753: Protein of u 48.6 98 0.0021 25.6 6.9 60 238-297 4-78 (140)
409 PRK15180 Vi polysaccharide bio 48.1 35 0.00075 34.7 5.2 98 185-297 288-385 (831)
410 KOG1464 COP9 signalosome, subu 48.1 72 0.0016 30.1 6.9 104 192-298 151-260 (440)
411 PF12854 PPR_1: PPR repeat 47.9 50 0.0011 20.0 4.2 27 268-294 6-32 (34)
412 cd02681 MIT_calpain7_1 MIT: do 47.9 41 0.00089 25.1 4.4 27 272-298 9-35 (76)
413 PRK15180 Vi polysaccharide bio 47.6 1.2E+02 0.0026 31.0 8.8 59 243-301 365-423 (831)
414 COG2909 MalT ATP-dependent tra 47.6 1.5E+02 0.0032 32.7 10.0 84 191-284 463-552 (894)
415 KOG3783 Uncharacterized conser 47.3 1.6E+02 0.0034 30.5 9.8 70 192-275 273-342 (546)
416 PF03097 BRO1: BRO1-like domai 47.1 2E+02 0.0043 28.3 10.7 30 269-298 239-268 (377)
417 KOG2114 Vacuolar assembly/sort 46.8 49 0.0011 35.9 6.3 31 186-216 368-398 (933)
418 cd09241 BRO1_ScRim20-like Prot 46.3 2.4E+02 0.0051 27.7 10.9 29 269-297 237-265 (355)
419 PF01535 PPR: PPR repeat; Int 45.9 34 0.00074 19.4 3.2 25 238-262 3-27 (31)
420 KOG0276 Vesicle coat complex C 45.6 58 0.0012 34.2 6.4 51 243-298 645-695 (794)
421 COG4649 Uncharacterized protei 45.5 2.2E+02 0.0047 25.2 11.8 85 196-293 68-156 (221)
422 KOG4459 Membrane-associated pr 44.8 44 0.00095 33.7 5.4 121 189-314 34-177 (471)
423 KOG4563 Cell cycle-regulated h 44.8 38 0.00082 33.2 4.8 37 181-217 36-72 (400)
424 cd02656 MIT MIT: domain contai 44.7 1.2E+02 0.0026 22.1 7.2 19 279-297 16-34 (75)
425 cd02680 MIT_calpain7_2 MIT: do 44.5 1.3E+02 0.0028 22.4 7.9 26 273-298 10-35 (75)
426 PF04212 MIT: MIT (microtubule 44.3 1.2E+02 0.0025 21.7 8.7 25 273-297 9-33 (69)
427 KOG1497 COP9 signalosome, subu 43.8 3.2E+02 0.0068 26.6 12.6 91 231-323 99-199 (399)
428 KOG3616 Selective LIM binding 43.3 79 0.0017 34.0 7.1 22 274-295 770-791 (1636)
429 KOG0739 AAA+-type ATPase [Post 43.2 3.2E+02 0.0069 26.5 11.2 44 251-302 7-50 (439)
430 PRK01490 tig trigger factor; P 42.4 41 0.00088 34.1 5.0 41 2-46 201-241 (435)
431 KOG1811 Predicted Zn2+-binding 42.1 66 0.0014 33.7 6.2 62 247-311 568-629 (1141)
432 COG3947 Response regulator con 42.0 98 0.0021 29.6 6.9 73 173-260 264-338 (361)
433 PF13812 PPR_3: Pentatricopept 41.7 70 0.0015 18.6 4.2 26 237-262 3-28 (34)
434 PF08424 NRDE-2: NRDE-2, neces 41.3 3.3E+02 0.0072 26.2 15.5 53 251-303 47-99 (321)
435 PF01239 PPTA: Protein prenylt 40.5 77 0.0017 18.6 4.4 28 254-281 2-29 (31)
436 KOG0530 Protein farnesyltransf 40.4 1.9E+02 0.004 27.4 8.3 95 243-338 51-146 (318)
437 smart00386 HAT HAT (Half-A-TPR 40.1 71 0.0015 18.1 4.4 19 284-302 2-20 (33)
438 PF07219 HemY_N: HemY protein 40.1 1.9E+02 0.004 22.9 7.6 46 238-283 62-107 (108)
439 KOG2610 Uncharacterized conser 40.1 2E+02 0.0043 28.2 8.6 60 243-302 145-208 (491)
440 cd09239 BRO1_HD-PTP_like Prote 39.9 2.1E+02 0.0045 28.3 9.4 29 269-297 252-280 (361)
441 KOG0889 Histone acetyltransfer 39.3 2.3E+02 0.005 36.2 10.9 84 233-318 2810-2901(3550)
442 KOG0529 Protein geranylgeranyl 39.0 3.4E+02 0.0073 27.3 10.3 68 245-313 85-154 (421)
443 PF08969 USP8_dimer: USP8 dime 38.6 38 0.00082 27.3 3.3 43 175-217 27-69 (115)
444 PF10938 YfdX: YfdX protein; 38.3 1.1E+02 0.0024 26.1 6.4 69 185-263 74-145 (155)
445 KOG3783 Uncharacterized conser 38.0 3.4E+02 0.0074 28.2 10.5 66 237-302 451-524 (546)
446 KOG3540 Beta amyloid precursor 37.9 4.2E+02 0.0092 27.1 10.8 53 250-302 327-381 (615)
447 TIGR00756 PPR pentatricopeptid 37.8 71 0.0015 18.4 3.9 25 238-262 3-27 (35)
448 COG3629 DnrI DNA-binding trans 36.4 1.4E+02 0.0029 28.4 7.1 61 186-261 153-213 (280)
449 PF15469 Sec5: Exocyst complex 36.1 74 0.0016 27.8 5.1 23 195-217 95-117 (182)
450 KOG0529 Protein geranylgeranyl 36.0 4.6E+02 0.01 26.3 11.2 87 202-303 91-183 (421)
451 PF02064 MAS20: MAS20 protein 34.7 1.3E+02 0.0028 24.7 5.8 29 273-301 67-95 (121)
452 cd02678 MIT_VPS4 MIT: domain c 33.9 1.9E+02 0.0041 21.2 9.1 25 273-297 10-34 (75)
453 PRK13184 pknD serine/threonine 33.9 4.4E+02 0.0096 29.7 11.5 64 237-302 554-624 (932)
454 COG5159 RPN6 26S proteasome re 33.8 4.4E+02 0.0095 25.3 10.1 116 186-314 206-326 (421)
455 KOG4014 Uncharacterized conser 33.4 3.5E+02 0.0077 24.2 8.8 13 202-214 128-140 (248)
456 PRK11619 lytic murein transgly 33.4 2.1E+02 0.0046 30.7 8.8 54 244-297 321-374 (644)
457 COG4455 ImpE Protein of avirul 33.3 3.9E+02 0.0085 24.6 11.0 92 195-301 10-118 (273)
458 KOG0276 Vesicle coat complex C 33.1 1.9E+02 0.0041 30.6 7.8 27 188-214 668-694 (794)
459 cd02677 MIT_SNX15 MIT: domain 33.0 2E+02 0.0044 21.2 8.7 49 276-329 13-68 (75)
460 cd00280 TRFH Telomeric Repeat 32.1 2E+02 0.0043 25.6 6.8 30 241-271 117-146 (200)
461 KOG0880 Peptidyl-prolyl cis-tr 31.3 67 0.0014 28.7 3.8 40 80-125 135-177 (217)
462 PF15127 DUF4565: Protein of u 30.4 28 0.00061 26.6 1.2 22 392-413 65-86 (91)
463 COG3014 Uncharacterized protei 30.3 3.5E+02 0.0075 26.6 8.6 31 269-299 125-155 (449)
464 PF00244 14-3-3: 14-3-3 protei 30.2 3.1E+02 0.0066 25.2 8.3 30 273-302 5-34 (236)
465 KOG2041 WD40 repeat protein [G 29.8 89 0.0019 33.5 5.0 45 235-287 796-840 (1189)
466 cd09240 BRO1_Alix Protein-inte 29.1 5.5E+02 0.012 25.1 13.0 30 269-298 255-284 (346)
467 PF09797 NatB_MDM20: N-acetylt 29.1 2.5E+02 0.0054 27.5 8.1 45 250-294 198-242 (365)
468 PRK10869 recombination and rep 28.9 6.4E+02 0.014 26.5 11.4 49 253-301 248-296 (553)
469 KOG4014 Uncharacterized conser 28.8 4.3E+02 0.0093 23.7 10.4 81 200-299 87-198 (248)
470 PF12739 TRAPPC-Trs85: ER-Golg 28.6 4E+02 0.0086 26.7 9.5 102 188-298 210-329 (414)
471 PF07163 Pex26: Pex26 protein; 28.6 3.4E+02 0.0073 25.9 8.1 110 191-302 40-150 (309)
472 PF04010 DUF357: Protein of un 28.5 59 0.0013 24.2 2.6 37 178-214 27-63 (75)
473 cd00632 Prefoldin_beta Prefold 28.4 2.9E+02 0.0063 21.6 9.4 57 236-297 17-73 (105)
474 PF09122 DUF1930: Domain of un 28.3 83 0.0018 22.4 3.1 23 119-141 35-57 (68)
475 cd02679 MIT_spastin MIT: domai 27.8 2.6E+02 0.0057 20.9 8.2 15 251-265 5-19 (79)
476 KOG3616 Selective LIM binding 27.7 2.2E+02 0.0048 30.9 7.4 36 267-302 993-1028(1636)
477 KOG4563 Cell cycle-regulated h 26.9 1.2E+02 0.0025 29.9 4.9 52 240-291 46-105 (400)
478 cd09243 BRO1_Brox_like Protein 26.2 3.4E+02 0.0074 26.7 8.2 29 269-297 248-276 (353)
479 COG1747 Uncharacterized N-term 25.3 4.4E+02 0.0095 27.5 8.7 108 195-302 140-292 (711)
480 cd02684 MIT_2 MIT: domain cont 25.2 2.8E+02 0.0061 20.4 8.4 24 274-297 11-34 (75)
481 PF12652 CotJB: CotJB protein; 25.1 3E+02 0.0065 20.6 6.0 53 277-334 3-55 (78)
482 KOG4056 Translocase of outer m 24.7 3.7E+02 0.0081 22.6 6.8 39 177-215 72-110 (143)
483 PF07219 HemY_N: HemY protein 24.5 2.3E+02 0.0049 22.4 5.6 36 179-214 52-87 (108)
484 PF07079 DUF1347: Protein of u 24.0 5.2E+02 0.011 26.5 8.9 98 189-296 9-106 (549)
485 KOG2396 HAT (Half-A-TPR) repea 23.9 2.5E+02 0.0055 28.9 6.8 57 201-272 120-177 (568)
486 COG5191 Uncharacterized conser 23.5 87 0.0019 30.2 3.3 61 198-273 119-180 (435)
487 COG5600 Transcription-associat 23.5 5.4E+02 0.012 25.6 8.7 104 194-301 138-252 (413)
488 KOG3677 RNA polymerase I-assoc 22.7 82 0.0018 31.5 3.1 51 243-297 243-300 (525)
489 COG4499 Predicted membrane pro 22.5 6.1E+02 0.013 25.3 8.8 52 236-290 282-334 (434)
490 PF13041 PPR_2: PPR repeat fam 22.4 2.3E+02 0.005 18.4 6.1 28 237-264 5-32 (50)
491 KOG2709 Uncharacterized conser 22.2 4.5E+02 0.0098 26.5 8.0 29 236-264 23-51 (560)
492 PF02255 PTS_IIA: PTS system, 22.2 1.5E+02 0.0032 23.1 4.0 30 267-296 12-41 (96)
493 cd09246 BRO1_Alix_like_1 Prote 21.9 2.8E+02 0.0062 27.2 6.9 29 269-297 247-275 (353)
494 COG1447 CelC Phosphotransferas 21.5 2E+02 0.0043 22.9 4.5 33 263-295 13-45 (105)
495 KOG1463 26S proteasome regulat 21.3 7.5E+02 0.016 24.4 9.1 65 233-297 126-196 (411)
496 PF08311 Mad3_BUB1_I: Mad3/BUB 21.2 4.6E+02 0.0099 21.4 8.3 57 238-296 68-126 (126)
497 cd00215 PTS_IIA_lac PTS_IIA, P 21.1 1.7E+02 0.0037 22.9 4.1 31 266-296 12-42 (97)
498 PLN00122 serine/threonine prot 20.9 5.1E+02 0.011 22.6 7.3 67 266-332 94-160 (170)
499 PF14689 SPOB_a: Sensor_kinase 20.3 2.6E+02 0.0056 19.7 4.6 24 272-295 26-49 (62)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-61 Score=457.58 Aligned_cols=310 Identities=40% Similarity=0.627 Sum_probs=286.4
Q ss_pred CccccCCcCcEEEEEEcCCCcCCC-CCCCCCCCCCeeeEEEEeeEEEeeeeecCCCceEEEEeecccCCCCCCCCCCCCe
Q 015006 1 MGIGTMTREEKAVIYVTSQYLTPS-PLMPVVEGCEEVHFEVELVHLIQVRDMLGDGRLIKRRIRDGKGEFPMDCPLHDSL 79 (414)
Q Consensus 1 ~~~~~m~~Ge~~~~~i~~~~~~g~-~~~~~ip~~~~l~~~vel~~~~~~~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~~ 79 (414)
+|+.||++ |+ +.||.||++++|.|+|+|+ ||+|+|+|+++|.|. ..+|..|..
T Consensus 53 ~gv~tm~~--------------g~~~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd--~~~P~~g~~ 106 (397)
T KOG0543|consen 53 LGVATMKK--------------GEAGSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGD--YSRPNKGAV 106 (397)
T ss_pred cccccccc--------------cccCCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCC--CCCCCCCcE
Confidence 47777877 44 6789999999999999998 899999999999996 367899999
Q ss_pred EEEEEEEEeecCCCceEeeeccCCCCCceEEEcCC-CCchHHHHHHhhhcCCCCeEEEEecCCCccc-cCCCCCCCCCCc
Q 015006 80 LCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGE-GLVPEGFEMCVRLMLPGEIALVTCPPDYAYD-KFLRPANVPEGA 157 (414)
Q Consensus 80 v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~-~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg-~~~~~~~ip~~~ 157 (414)
|+|||.|++.+ + +|+++.. .|+|.+|+ ..||.||+.||++|++||++.|+|+|+|+|| ..+.++.||||+
T Consensus 107 V~v~~~G~~~~--~-~f~~~~~-----~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA 178 (397)
T KOG0543|consen 107 VKVHLEGELED--G-VFDQREL-----RFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNA 178 (397)
T ss_pred EEEEEEEEECC--c-ceecccc-----ceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCc
Confidence 99999999965 4 7755433 48999998 5799999999999999999999999999999 556679999999
Q ss_pred ceEEEEEEcccC-CCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhH
Q 015006 158 HIQWEIELLGFE-KPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNL 236 (414)
Q Consensus 158 ~l~~eieL~~~~-~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~ 236 (414)
+|.|+|+|++|. .....|.|..+++++.|...|+.||.+|+.|+|..|+..|.+|+.++.+..+.++++.+....++..
T Consensus 179 ~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~ 258 (397)
T KOG0543|consen 179 TLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA 258 (397)
T ss_pred eEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH
Confidence 999999999999 6777888888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
+|+|+|+||+|+++|..|+..|++||+++|+|+||+||+|+|++.+++|+.|+.+|++|++++|+| ++++.+|..|+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k 337 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQK 337 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCccccccc
Q 015006 317 RQEVESKARKQFKGLFDKKPGEISEVGIE 345 (414)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (414)
.++++.+++++|++||.+......+....
T Consensus 338 ~~~~~~kekk~y~~mF~k~~~~~~k~~s~ 366 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLAEESAKTKSE 366 (397)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccc
Confidence 99999999999999999987766555444
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-37 Score=271.98 Aligned_cols=275 Identities=26% Similarity=0.377 Sum_probs=241.0
Q ss_pred CceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeE
Q 015006 55 GRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIA 134 (414)
Q Consensus 55 g~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~ 134 (414)
.+|.|+||..|.|..|..+ +|+.|++||.....++.+++++||+- .|+|+++.+|.-+-.+.||.+|.+|+++|++
T Consensus 10 ~gv~Kril~~G~g~l~e~~--dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva 85 (329)
T KOG0545|consen 10 EGVKKRILHGGTGELPEFI--DGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEVA 85 (329)
T ss_pred hhhhHhhccCCCccCcccc--CCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence 3789999999999988775 59999999999988888999988875 6999999999999999999999999999999
Q ss_pred EEEecCCCc--ccc---------CCCCCC------------C--------------CCCcceEEEEEEcccCCCC----C
Q 015006 135 LVTCPPDYA--YDK---------FLRPAN------------V--------------PEGAHIQWEIELLGFEKPK----D 173 (414)
Q Consensus 135 ~v~i~~~~~--yg~---------~~~~~~------------i--------------p~~~~l~~eieL~~~~~~~----~ 173 (414)
.|+|.-... |.- .|..|. + ..-.+|+|.++|+.++.|. +
T Consensus 86 qF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e 165 (329)
T KOG0545|consen 86 QFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRE 165 (329)
T ss_pred HhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhccc
Confidence 999864321 210 011000 0 0115799999999998765 6
Q ss_pred CCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCC---CChHHHHHHhhhhhHHHHHHHHHHHHcCC
Q 015006 174 WTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP---QDDEEGKVFVGKRNLLHLNVAACLLKLGE 250 (414)
Q Consensus 174 ~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p---~~~~e~~~~~~~~~~~~~N~a~~~~kl~~ 250 (414)
.|.|+.++++..+..+.++||.+|+.|+|.+|..+|..|+..+.++.. ..+.++.++......+++|.|.|+++.++
T Consensus 166 ~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e 245 (329)
T KOG0545|consen 166 TWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEE 245 (329)
T ss_pred cccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHH
Confidence 789999999999999999999999999999999999999988766521 23457888888889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKG 330 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 330 (414)
|-+++++|+.+|..+|.|+|||||||+|+...-+..+|.++|.++|+++|.-.+.+.++|..+..++++.+...+..+++
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~k 325 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCRK 325 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred hcc
Q 015006 331 LFD 333 (414)
Q Consensus 331 ~~~ 333 (414)
||+
T Consensus 326 mfs 328 (329)
T KOG0545|consen 326 MFS 328 (329)
T ss_pred hcC
Confidence 996
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.7e-28 Score=203.45 Aligned_cols=161 Identities=22% Similarity=0.304 Sum_probs=131.1
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEEee---eeecCCCceEEEEeecccCCCCCCCCCCCC
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLIQV---RDMLGDGRLIKRRIRDGKGEFPMDCPLHDS 78 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~~~---~dv~~dg~~~k~i~~~G~g~~~~~~p~~~~ 78 (414)
|+.+|+.||+..+.|||+.+||.++... -..+.|.+.++..... +....+..+...+++.-.. .......||
T Consensus 15 ~~~g~c~ge~rkvv~pp~l~fg~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~--C~~kak~GD 89 (188)
T KOG0549|consen 15 ALEGMCNGEKRKVVIPPHLGFGEGGRGD---LNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEE--CPEKAKKGD 89 (188)
T ss_pred HhhhhhccccceeccCCccccccccccc---ccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCcc--ccccccCCC
Confidence 6789999999999999999999544322 1446677776665432 2223455666677776222 223346899
Q ss_pred eEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcc
Q 015006 79 LLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAH 158 (414)
Q Consensus 79 ~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~ 158 (414)
.|++||+|.+.| |++| ||++. +++|++|+||.|+||+|||.+|.+|++||+..++|||+++||+.|.++.||++++
T Consensus 90 ~l~~HY~g~leD--Gt~f-dSS~~-rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~ 165 (188)
T KOG0549|consen 90 TLHVHYTGSLED--GTKF-DSSYS-RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGDAV 165 (188)
T ss_pred EEEEEEEEEecC--CCEE-eeecc-CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCCee
Confidence 999999999976 9998 77776 7899999999999999999999999999999999999999999999988999999
Q ss_pred eEEEEEEcccCCC
Q 015006 159 IQWEIELLGFEKP 171 (414)
Q Consensus 159 l~~eieL~~~~~~ 171 (414)
|+|+|||+.+...
T Consensus 166 LiFdiELv~i~~~ 178 (188)
T KOG0549|consen 166 LIFDIELVKIERG 178 (188)
T ss_pred EEEEEEEEEeecC
Confidence 9999999998764
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.8e-27 Score=173.93 Aligned_cols=106 Identities=36% Similarity=0.607 Sum_probs=98.6
Q ss_pred ceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEE
Q 015006 56 RLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIAL 135 (414)
Q Consensus 56 ~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~ 135 (414)
++-+.+|+.|.|. ..|..|++|++||+|++.| |+.| ||+.| +++||.|.+|.|+||.|||.++..|.+||++.
T Consensus 2 Gv~~~~i~~Gdg~---tfpK~Gqtvt~hYtg~L~d--G~kf-DSs~d-r~kPfkf~IGkgeVIkGwdegv~qmsvGekak 74 (108)
T KOG0544|consen 2 GVEKQVISPGDGR---TFPKKGQTVTVHYTGTLQD--GKKF-DSSRD-RGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAK 74 (108)
T ss_pred CceeEEeeCCCCc---ccCCCCCEEEEEEEeEecC--CcEe-ecccc-cCCCeeEEecCcceeechhhcchhccccccce
Confidence 3678999999995 3468999999999999987 9998 78887 78999999999999999999999999999999
Q ss_pred EEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006 136 VTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168 (414)
Q Consensus 136 v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~ 168 (414)
++|+|+||||..|.+..||||++|+|+|||+++
T Consensus 75 Lti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 75 LTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred eeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 999999999999999999999999999999976
No 5
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-23 Score=180.36 Aligned_cols=105 Identities=32% Similarity=0.552 Sum_probs=97.4
Q ss_pred CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133 (414)
Q Consensus 54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~ 133 (414)
.++|..++++.|.|..| ..+++|+|||+|+|.| |++| |++++ +++|+.|.|| .||+||+.+|..|++|++
T Consensus 100 ~sgl~y~~~~~G~G~~~----~~~~~V~vhY~G~l~~--G~vF-DsS~~-rg~p~~f~l~--~vI~Gw~egl~~M~vG~k 169 (205)
T COG0545 100 PSGLQYKVLKAGDGAAP----KKGDTVTVHYTGTLID--GTVF-DSSYD-RGQPAEFPLG--GVIPGWDEGLQGMKVGGK 169 (205)
T ss_pred CCCcEEEEEeccCCCCC----CCCCEEEEEEEEecCC--CCcc-ccccc-cCCCceeecC--CeeehHHHHHhhCCCCce
Confidence 46788999999999755 6899999999999987 9998 78877 7999999999 799999999999999999
Q ss_pred EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168 (414)
Q Consensus 134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~ 168 (414)
+.++|||++|||..|.+..||||++|+|+|+|+++
T Consensus 170 ~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 170 RKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDV 204 (205)
T ss_pred EEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence 99999999999999988779999999999999976
No 6
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.87 E-value=6.6e-22 Score=181.20 Aligned_cols=125 Identities=27% Similarity=0.471 Sum_probs=119.1
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
+-..+|+.+|.+||.+++.++|.+|+.+|++||. ++|.+ +.+|+|+|++|.++|.|..|+++|..
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~----l~P~n-----------AVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIE----LDPTN-----------AVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----cCCCc-----------chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6677899999999999999999999999999999 88888 88999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
||.+||.+.|||-|+|.||+.+|+|++|++.|++||+++|+| ...+..|..+++++.+..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999 689999999988877654
No 7
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=161.96 Aligned_cols=137 Identities=32% Similarity=0.548 Sum_probs=122.6
Q ss_pred hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 258 (414)
Q Consensus 179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~ 258 (414)
.+..+..+..+|..||.+|+.|+|.+|...|..||..|+.+. .+.+..||+|+|+|++|++.|+.|+.+|
T Consensus 88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dc 157 (271)
T KOG4234|consen 88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDC 157 (271)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHH
Confidence 344577899999999999999999999999999999654322 3567889999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006 259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARK 326 (414)
Q Consensus 259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~ 326 (414)
.+||+++|.+.||+.|||.+|.++..|++|+++|++.++++|.+ ..++..+.++..++.+.+++.+.
T Consensus 158 sKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~-~ear~~i~rl~~~i~ernEkmKe 224 (271)
T KOG4234|consen 158 SKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSR-REAREAIARLPPKINERNEKMKE 224 (271)
T ss_pred HhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch-HHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 68998998888888777666544
No 8
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=7e-19 Score=158.02 Aligned_cols=105 Identities=31% Similarity=0.492 Sum_probs=95.0
Q ss_pred CCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCe
Q 015006 54 DGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEI 133 (414)
Q Consensus 54 dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~ 133 (414)
..++.++|+++|.|.. |..++.|+|||+|++.| |++| ++++. ++.|++|.+| .+++||+.+|.+|++|++
T Consensus 101 ~sGl~y~vi~~G~G~~----p~~~d~V~v~Y~g~l~d--G~vf-dss~~-~g~P~~f~l~--~vipG~~eaL~~M~~G~k 170 (206)
T PRK11570 101 ESGLQFRVLTQGEGAI----PARTDRVRVHYTGKLID--GTVF-DSSVA-RGEPAEFPVN--GVIPGWIEALTLMPVGSK 170 (206)
T ss_pred CCCcEEEEEeCCCCCC----CCCCCEEEEEEEEEECC--CCEE-EeccC-CCCCeEEEee--chhhHHHHHHcCCCCCCE
Confidence 4578899999999975 46899999999999975 9998 66665 6789999996 599999999999999999
Q ss_pred EEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006 134 ALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168 (414)
Q Consensus 134 ~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~ 168 (414)
+.|.|||+++||..+.++.|||+++|+|+|+|++|
T Consensus 171 ~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 171 WELTIPHELAYGERGAGASIPPFSTLVFEVELLEI 205 (206)
T ss_pred EEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence 99999999999999988899999999999999976
No 9
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.78 E-value=1.9e-18 Score=151.60 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006 53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 132 (414)
Q Consensus 53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE 132 (414)
...++...++..+.|.. ..|..|+.|++||.+++.+ |++|+++. +..|++|.+|.+.+++||+.+|.+|++||
T Consensus 67 t~sGl~Y~v~~~~~g~g--~~p~~gd~V~v~Y~~~~~d--G~v~~ss~---~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge 139 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEG--TTPEFGDLVTFEYDIRALD--GDVIYSEE---ELGPQTYKVDQQDLFSGLRDGLKLMKEGE 139 (177)
T ss_pred CCCccEEEEEEecCCCC--CcCCCCCEEEEEEEEEeCC--CCEEEeCC---CCCCEEEEeCCcchhHHHHHHHcCCCCCC
Confidence 34567777776644431 2357899999999999976 99985543 34599999999999999999999999999
Q ss_pred eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccC
Q 015006 133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFE 169 (414)
Q Consensus 133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~ 169 (414)
++.|.+||++|||..+.+..||+|++|+|+|+|+++.
T Consensus 140 ~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 140 TATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence 9999999999999999888899999999999999874
No 10
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.7e-18 Score=154.38 Aligned_cols=108 Identities=31% Similarity=0.504 Sum_probs=96.9
Q ss_pred cCCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceE-EEcCCCCchHHHHHHhhhcCC
Q 015006 52 LGDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLE-FSSGEGLVPEGFEMCVRLMLP 130 (414)
Q Consensus 52 ~~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~-f~lG~~~v~~gle~~l~~M~~ 130 (414)
+-.|+|+.+-++.|.|..+ ..|+.|.|||.|++.. +|.+| |+++ .++|+. |++|.+.||+||+.+|.+|++
T Consensus 117 tl~~Gl~y~D~~vG~G~~a----~~G~rV~v~Y~Gkl~~-~GkvF-d~~~--~~kp~~~f~lg~g~VIkG~d~gv~GMkv 188 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSGPSA----KKGKRVSVRYIGKLKG-NGKVF-DSNF--GGKPFKLFRLGSGEVIKGWDVGVEGMKV 188 (226)
T ss_pred ecCCCcEEEEEEecCCCCC----CCCCEEEEEEEEEecC-CCeEe-eccc--CCCCccccccCCCCCCchHHHhhhhhcc
Confidence 3356788888899999765 5899999999999985 59998 5555 578999 999999999999999999999
Q ss_pred CCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEccc
Q 015006 131 GEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGF 168 (414)
Q Consensus 131 GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~ 168 (414)
|.+.+|+|||.+|||..+.+ .||||++|+|+|+|+.+
T Consensus 189 GGkRrviIPp~lgYg~~g~~-~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 189 GGKRRVIIPPELGYGKKGVP-EIPPNSTLVFDVELLSV 225 (226)
T ss_pred CCeeEEEeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence 99999999999999999987 89999999999999875
No 11
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.73 E-value=2.6e-17 Score=130.25 Aligned_cols=90 Identities=36% Similarity=0.605 Sum_probs=81.0
Q ss_pred CCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCC-CC
Q 015006 73 CPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR-PA 151 (414)
Q Consensus 73 ~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~-~~ 151 (414)
.|..||.|+|||++++.+ |++| ++++. .+.|++|.+|.+.+++||+.+|.+|++||++.|.+|++++||..+. ..
T Consensus 4 ~~~~gd~V~i~y~~~~~~--g~~~-~~~~~-~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~ 79 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLED--GKVF-DSSYQ-EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPP 79 (94)
T ss_dssp SBSTTSEEEEEEEEEETT--SEEE-EETTT-TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTT
T ss_pred cCCCCCEEEEEEEEEECC--CcEE-EEeee-cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCC
Confidence 467999999999999864 8888 45543 5789999999999999999999999999999999999999999887 45
Q ss_pred CCCCCcceEEEEEEc
Q 015006 152 NVPEGAHIQWEIELL 166 (414)
Q Consensus 152 ~ip~~~~l~~eieL~ 166 (414)
.||++++|+|+|+|+
T Consensus 80 ~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 80 KIPPNSTLVFEIELL 94 (94)
T ss_dssp TBTTTSEEEEEEEEE
T ss_pred CcCCCCeEEEEEEEC
Confidence 799999999999985
No 12
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.73 E-value=1.3e-17 Score=154.59 Aligned_cols=121 Identities=26% Similarity=0.432 Sum_probs=111.8
Q ss_pred hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHH
Q 015006 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEAC 258 (414)
Q Consensus 179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~ 258 (414)
.++.+..+..+|++||.||++|+|.+|+.||.+++. +.|.+ ..+|.|+|.+|++++.|..|..+|
T Consensus 90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia----~~P~N-----------pV~~~NRA~AYlk~K~FA~AE~DC 154 (536)
T KOG4648|consen 90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIA----VYPHN-----------PVYHINRALAYLKQKSFAQAEEDC 154 (536)
T ss_pred HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhc----cCCCC-----------ccchhhHHHHHHHHHHHHHHHHhH
Confidence 467788899999999999999999999999999999 67766 679999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 259 NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 259 ~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
+.|+.+|...+|||.|||.|...+|+..+|.++|+.+|+|+|++ .+++..++.+..
T Consensus 155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~-~ELkK~~a~i~S 210 (536)
T KOG4648|consen 155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN-IELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc-HHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999997 567777666654
No 13
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.4e-17 Score=160.04 Aligned_cols=116 Identities=29% Similarity=0.543 Sum_probs=108.5
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+...+..||++|+.|+|..|+..|++||. .+|.+ ..+|+|||+||++++.+..|+.+|+++++++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIk----r~P~D-----------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIK----RDPED-----------ARLYSNRAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHh----cCCch-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 77889999999999999999999999999 78888 8899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
|++.|+|+|.|.|+..+.+|+.|++.|+++++++|++ .++...+.+|...+
T Consensus 423 p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 423 PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVEAQ 473 (539)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999997 66777777776544
No 14
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=8.9e-17 Score=155.11 Aligned_cols=109 Identities=31% Similarity=0.536 Sum_probs=100.5
Q ss_pred CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006 175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 254 (414)
Q Consensus 175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A 254 (414)
..++.+++++.|..+|.+||.+|+.|+|.+||++|+.||. +.|+. ...|.|||+||..+|+|++.
T Consensus 104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~----l~p~e-----------piFYsNraAcY~~lgd~~~V 168 (606)
T KOG0547|consen 104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIE----LCPDE-----------PIFYSNRAACYESLGDWEKV 168 (606)
T ss_pred hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHh----cCCCC-----------chhhhhHHHHHHHHhhHHHH
Confidence 4578899999999999999999999999999999999999 55554 57899999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+++|++||+++|+++|||+||+.||-.+|++.+|+.++.-..-+
T Consensus 169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~ 212 (606)
T KOG0547|consen 169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCIL 212 (606)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHh
Confidence 99999999999999999999999999999999999998754433
No 15
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=1.2e-16 Score=148.69 Aligned_cols=108 Identities=28% Similarity=0.509 Sum_probs=95.1
Q ss_pred CCCceEEEEeecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCC
Q 015006 53 GDGRLIKRRIRDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGE 132 (414)
Q Consensus 53 ~dg~~~k~i~~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE 132 (414)
.+.++.++|+++|+|.. |..||.|+|||.|++.| |++| ++++. ++.|++|.+| .+++||+.+|.+|++|+
T Consensus 144 t~sGl~y~Vi~~G~G~~----p~~gD~V~V~Y~g~l~d--G~vf-dss~~-~g~p~~f~l~--~vipG~~EaL~~Mk~Ge 213 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEA----PKDSDTVVVNYKGTLID--GKEF-DNSYT-RGEPLSFRLD--GVIPGWTEGLKNIKKGG 213 (269)
T ss_pred CCCccEEEEEeCCCCCC----CCCCCEEEEEEEEEeCC--CCEe-ecccc-CCCceEEecC--CcchHHHHHHhcCCCCc
Confidence 35578999999999975 46899999999999865 9998 55554 5789999986 59999999999999999
Q ss_pred eEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCC
Q 015006 133 IALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKP 171 (414)
Q Consensus 133 ~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~ 171 (414)
++.|.||++++||..+.+ .||+|++|+|+|+|+++...
T Consensus 214 k~~l~IP~~laYG~~g~~-gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 214 KIKLVIPPELAYGKAGVP-GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred EEEEEECchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence 999999999999999865 79999999999999998654
No 16
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=146.82 Aligned_cols=107 Identities=29% Similarity=0.436 Sum_probs=99.3
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.|..+|+.||.+|+.++|..|+.+|+++|. ..+.+ .++.+.+|+|||+|++-+|+|..|+.+|.+|+.+
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk----~kc~D-------~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLK----KKCAD-------PDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHh----hcCCC-------ccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999 56666 4567899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+|.+.||+||-|+|++.|.+|.+|..+++..+.++-++
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999999998888776443
No 17
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.3e-15 Score=145.43 Aligned_cols=219 Identities=22% Similarity=0.351 Sum_probs=142.0
Q ss_pred ecccCCCCCCCCCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCC
Q 015006 63 RDGKGEFPMDCPLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDY 142 (414)
Q Consensus 63 ~~G~g~~~~~~p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~ 142 (414)
++|.|+ ..|..|+.|.+||+|++.| |+.| |++.+ +.|+.|.+|.|.++.||+.++.+|+.
T Consensus 1 ~eg~g~---~~p~~g~~v~~hytg~l~d--gt~f-dss~d--~~~~~~~lg~g~vi~~~~~gv~tm~~------------ 60 (397)
T KOG0543|consen 1 KEGTGT---ETPMTGDKVEVHYTGTLLD--GTKF-DSSRD--GDPFKFDLGKGSVIKGWDLGVATMKK------------ 60 (397)
T ss_pred CCCCCc---cCCCCCceeEEEEeEEecC--Ceec-ccccC--CCceeeecCCCccccccccccccccc------------
Confidence 468886 3467999999999999987 9998 66654 88999999999999999999999998
Q ss_pred ccccCCCCCCCCCCcceEEEEEEcc------cCCCCCC-CCCchhhh---------hHHHHHHHhhhccccccccHHHHH
Q 015006 143 AYDKFLRPANVPEGAHIQWEIELLG------FEKPKDW-TGLSFDGI---------MDEAEKIRVTGNRLFKEGKFELAK 206 (414)
Q Consensus 143 ~yg~~~~~~~ip~~~~l~~eieL~~------~~~~~~~-~~~~~~e~---------~~~a~~~k~~Gn~~fk~g~y~~A~ 206 (414)
|..+.+|.||++++|.|+|+|.+ +....+. ...+.+.. +.--.-....=+..|..|+-..-+
T Consensus 61 --g~~~~pp~ip~~a~l~fe~el~Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi 138 (397)
T KOG0543|consen 61 --GEAGSPPKIPSNATLLFEVELLDGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVI 138 (397)
T ss_pred --cccCCCCCCCCCcceeeeecccCCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceeccccceEEecCCccchh
Confidence 66677889999999999999843 1111111 00000000 000000001111344555411122
Q ss_pred HHHHHHHhhc-----------------------ccCCCCC---------------hHHHHHHhh---hhhHHHHHHHHHH
Q 015006 207 AKYEKVLRDF-----------------------NHVNPQD---------------DEEGKVFVG---KRNLLHLNVAACL 245 (414)
Q Consensus 207 ~~Y~~al~~~-----------------------~~~~p~~---------------~~e~~~~~~---~~~~~~~N~a~~~ 245 (414)
.-...|+..+ ..+.|.. .+.+..... -.+...--.|..|
T Consensus 139 ~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~ 218 (397)
T KOG0543|consen 139 EGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFELKEDESWKMFAEERLEAADRKKERGNVL 218 (397)
T ss_pred HHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeeecCcccccccchHHHHHHHHHHHHhhhHH
Confidence 2222222211 1111111 011111111 0122344578899
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 246 LKLGECRKSIEACNKVLDANP---------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 246 ~kl~~~~~A~~~~~~al~~dp---------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
+|.++|..|...|.+|+..-. .-..++.++|.|+.++++|.+|+..+.++|.++|+|.
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 999999999999999875432 1267899999999999999999999999999999984
No 18
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.6e-16 Score=148.30 Aligned_cols=128 Identities=27% Similarity=0.420 Sum_probs=114.5
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
-..+..+.+++.||.+|+.|+|..|.++|+.||. ++|.+ .+..+.||.|+|.+..++|+..+|+.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~----idP~n-------~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN----IDPSN-------KKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc----CCccc-------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 3455788899999999999999999999999999 78887 456688999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
|+.+||...|||.|+|+||+.+++|++|+++|++|+++..+ ..+++.|..++..++..+
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s--~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD--CEIRRTLREAQLALKKSK 371 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999876 457777777766665444
No 19
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.5e-16 Score=149.97 Aligned_cols=113 Identities=27% Similarity=0.456 Sum_probs=107.2
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+++.||.+|..|+|..|+.+|+.||. +.|.+ ..+|+|+++||.++++|.+|+.+..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~----l~p~n-----------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIM----LSPTN-----------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHc----cCCCc-----------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56789999999999999999999999999 78877 7899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
|.++|+|.|+|.|+..+|+|++|+..|.+.|+.+|+| +.+...|..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n-~~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSN-KQLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCch-HHHHHhHHHhh
Confidence 9999999999999999999999999999999999998 67887777776
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=2e-14 Score=151.78 Aligned_cols=136 Identities=26% Similarity=0.389 Sum_probs=118.8
Q ss_pred CCCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHh
Q 015006 152 NVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV 231 (414)
Q Consensus 152 ~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~ 231 (414)
.+|++..+.+.+++..+.. ...+.++.+++...+..+++.||.+|+.|+|..|+..|+++|. +.|.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~----~~p~--------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEIDE-SSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIE----CKPD--------- 159 (615)
T ss_pred CCCCCCCCCccccccccch-hhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc---------
Confidence 4566666666666655444 4567899999999999999999999999999999999999999 5553
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304 (414)
Q Consensus 232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~ 304 (414)
..+|+|+|.||+++++|++|+.+|.+||+++|+++++++++|.+|..+|+|++|+.+|..++.+++.+..
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~ 229 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNE 229 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccH
Confidence 2479999999999999999999999999999999999999999999999999999999999888876533
No 21
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.60 E-value=1.2e-14 Score=142.70 Aligned_cols=119 Identities=22% Similarity=0.377 Sum_probs=110.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..++..|+.+|..|+|..|+..|.+||. +.|.+ ..+|+|+|.||+++|+|.+|+.++.+||.++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~----~~P~~-----------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAID----LDPNN-----------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999999 77777 6799999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 320 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~ 320 (414)
|.++.+|+++|.+|+.+|+|++|+..|++|++++|++ ..+...+..|..++...
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~-~~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGD-SRFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998 67888888887777543
No 22
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.1e-15 Score=138.04 Aligned_cols=243 Identities=25% Similarity=0.363 Sum_probs=174.2
Q ss_pred EEEEEEEEeecCCCceEeeeccCC---CCCceEEEcCCCCchHHHHHH--hhhcCCCCe----EEEEec--CCCccccC-
Q 015006 80 LCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMC--VRLMLPGEI----ALVTCP--PDYAYDKF- 147 (414)
Q Consensus 80 v~v~y~g~~~~~~g~~~~~s~~~~---~~~p~~f~lG~~~v~~gle~~--l~~M~~GE~----~~v~i~--~~~~yg~~- 147 (414)
+.+.-.| +|++|+.||-|+... +|+.++| |+||.|++.+ |...+..+. +-|.|. .++.-+..
T Consensus 111 LSMAN~G--pNTNgSQFFITT~p~PHLdGkHVVF----GqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~ 184 (372)
T KOG0546|consen 111 LSMANRG--PNTNGSQFFITTVPTPHLDGKHVVF----GQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKV 184 (372)
T ss_pred hhhhcCC--CCCCCcceEEeCCCCCCcCCceeEE----eeEeechhHHHHHhccccccCCCCccceEecccccccccccc
Confidence 3444455 467799999998653 6677777 4677666543 333334333 222221 12211100
Q ss_pred --CCCCCCCCCcceEEEEEEcccCC-CCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh
Q 015006 148 --LRPANVPEGAHIQWEIELLGFEK-PKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD 224 (414)
Q Consensus 148 --~~~~~ip~~~~l~~eieL~~~~~-~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~ 224 (414)
.....-+.+..-.++ ++.. ...|...+....+..++..++.||..|+.++|..|...|.++++++......+.
T Consensus 185 ~~~~~a~~~~~sgd~~~----d~p~~~~~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~ 260 (372)
T KOG0546|consen 185 KEDAGASEPDETGDSYE----DYPKDDRSWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDRE 260 (372)
T ss_pred cccccCCCCCCCCCccc----ccccccccccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccc
Confidence 000000111111111 1111 122334456777888999999999999999999999999999998875222222
Q ss_pred HH----HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 225 EE----GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 225 ~e----~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
.+ ...+..++..++.|++.|-++++.|..|+..|..+++.+++..+||||++++++.+.++++|+++++.|....|
T Consensus 261 ~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p 340 (372)
T KOG0546|consen 261 KEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAP 340 (372)
T ss_pred cccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCc
Confidence 11 13356777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006 301 SSEPDATAALSKLKKQRQEVESKARKQFKGLFD 333 (414)
Q Consensus 301 ~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (414)
++ ..+...+..+.++...++.++++.+.+||+
T Consensus 341 ~d-~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s 372 (372)
T KOG0546|consen 341 ND-KAIEEELENVRQKKKQYNRKQKKALSKMFS 372 (372)
T ss_pred ch-HHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 97 789999999999999999999999998874
No 23
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.51 E-value=4e-13 Score=114.88 Aligned_cols=113 Identities=17% Similarity=0.273 Sum_probs=102.5
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|..++..|+|.+|+..|.+++. ..|.+ ..++.++|.++.++|+|++|+..+.+++.++|++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM----AQPWS-----------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 45678999999999999999999999 78877 7799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
+.+++++|.++..+|++++|+..|.+|+++.|++ ......+..++..+
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~-~~~~~~~~~~~~~l 139 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD-ASWSEIRQNAQIMV 139 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 56666665554443
No 24
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2e-13 Score=121.33 Aligned_cols=118 Identities=26% Similarity=0.365 Sum_probs=105.4
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+.++++.||.+|..+.|..|+.+|.+||. ++|.. ++.|.|+|.||+++++|+.+..+|.+|+++
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~----~nP~~-----------~~Y~tnralchlk~~~~~~v~~dcrralql 73 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAIC----INPTV-----------ASYYTNRALCHLKLKHWEPVEEDCRRALQL 73 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHh----cCCCc-----------chhhhhHHHHHHHhhhhhhhhhhHHHHHhc
Confidence 589999999999999999999999999999 77766 789999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHHH
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD----KSSEPDATAALSKLKKQR 317 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~----P~n~~~~~~~l~~~~~~~ 317 (414)
+|+.+|++|-+|++++....|++|+..+++|+.+- +++..++-.+|..++.+.
T Consensus 74 ~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 74 DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence 99999999999999999999999999999997662 223346777777776543
No 25
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.46 E-value=9.2e-14 Score=135.18 Aligned_cols=121 Identities=30% Similarity=0.460 Sum_probs=113.5
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.|+.++.++|.+|+.+.|..|+..|.+||+ ++|.. +..+.|+|.+++|.++|..|+.++.+|+++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~----ldpnc-----------a~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIE----LDPNC-----------AIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHh----cCCcc-----------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 478899999999999999999999999999 77776 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
+|...|||+|+|.+++.+++|.+|+.+|++...+.|+. +.+++.+..|.....+++
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd-~~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPND-PDATRKIDECNKIVSEEK 123 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCc-HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997 789999999988777544
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=1.7e-11 Score=103.22 Aligned_cols=114 Identities=19% Similarity=0.369 Sum_probs=101.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+...|..++..|+|.+|...|++++. ..|.+ ..++.++|.|++++++|.+|+..+.+++.++
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAA----YDPYN-----------SRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH----hCCCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44567888999999999999999999998 56666 6789999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
|.++..++.+|.++..+|++++|+..|+++++++|++ ........++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~ 130 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN-PEYSELKERAEA 130 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 455544544443
No 27
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.2e-12 Score=98.61 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=41.4
Q ss_pred CccccCCcCcEEEEEEcCCCcCCCC-CCCCCCCCCeeeEEEEeeEE
Q 015006 1 MGIGTMTREEKAVIYVTSQYLTPSP-LMPVVEGCEEVHFEVELVHL 45 (414)
Q Consensus 1 ~~~~~m~~Ge~~~~~i~~~~~~g~~-~~~~ip~~~~l~~~vel~~~ 45 (414)
.||+.|-+||+|.++|+|+||||.. .|+.||||++|+|+|||++.
T Consensus 62 egv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 62 EGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKV 107 (108)
T ss_pred hcchhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEec
Confidence 4899999999999999999999985 46789999999999999975
No 28
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.30 E-value=6.6e-12 Score=108.13 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=62.0
Q ss_pred CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006 75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 147 (414)
Q Consensus 75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~ 147 (414)
..|+.|++||++++.| |++| ++++. .+.|+.|.+|.|.+++||+.+|.+|++|+++.|.|||+.|||..
T Consensus 6 ~~~~~V~v~Y~~~~~d--G~v~-dst~~-~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 6 QSNSAVLVHFTLKLDD--GSTA-ESTRN-NGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred CCCCEEEEEEEEEeCC--CCEE-EECCC-CCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 5789999999999865 8988 66553 47899999999999999999999999999999999999999954
No 29
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.30 E-value=7e-11 Score=100.38 Aligned_cols=102 Identities=9% Similarity=0.090 Sum_probs=94.2
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
.+.+-..|..++..|++.+|...|+-... .+|.+ ...++|+|.|+..+|+|.+|+..|.+|+.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~----~Dp~~-----------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTI----YDAWS-----------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45567788999999999999999999988 67777 7799999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
|+++.++++.|.|++.+|+.+.|++.|+.|+...-.+
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999987443
No 30
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=1.6e-11 Score=90.93 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~P 300 (414)
+.++.++|.+++.+++|++|+.+|+++|+++|+++.+++++|.++..+| ++++|+++|++|++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5688999999999999999999999999999999999999999999999 79999999999999998
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=9.5e-11 Score=112.51 Aligned_cols=103 Identities=22% Similarity=0.244 Sum_probs=98.4
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+.++|..+...|++..|+..|++++. ..|.+ ..+|+++|.++..+|+|++|+..+.+++++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALA----LRPDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999 78877 679999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+|++..+++++|.++...|++++|+.+|+++++++|++
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999997
No 32
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=3.7e-10 Score=101.79 Aligned_cols=103 Identities=15% Similarity=0.250 Sum_probs=95.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHH-HHcCC--HHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACL-LKLGE--CRKSIEACNKVL 262 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~-~kl~~--~~~A~~~~~~al 262 (414)
+..+...|..+...|+|..|+..|.+|+. +.|.+ ..+++++|.|+ ...|+ +.+|+..+.+++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~----l~P~~-----------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQ----LRGEN-----------AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 55688889999999999999999999999 78887 77999999985 67787 599999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
+++|+++.+++.+|.+++.+|+|++|+..|+++++++|.+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999864
No 33
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-10 Score=116.23 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+.+++|+|..|-.+|++++|+.+++.||+++|..+.||.++|+.|..+|+...|+.+|.+|+.++|.. +++..+|..+.
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~ 466 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIY 466 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHh
Confidence 56788888888888888888888888888888888888888888888888888888888888888876 67777777765
Q ss_pred H
Q 015006 315 K 315 (414)
Q Consensus 315 ~ 315 (414)
+
T Consensus 467 k 467 (966)
T KOG4626|consen 467 K 467 (966)
T ss_pred h
Confidence 4
No 34
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.15 E-value=3.1e-10 Score=113.05 Aligned_cols=114 Identities=24% Similarity=0.317 Sum_probs=84.9
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+-+.|-.|+.+|..+.||..|++||. +.|.. ..+|+|+|.++-..|+..+|..++++||.+.|++
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~----~~P~F-----------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h 353 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALE----LQPNF-----------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH 353 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHh----cCCCc-----------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence 33444455555555555555555555 44444 4588888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
+.+++++|+++.++|.+++|...|.+||+..|.. ..+..+|..+.+...
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqg 402 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQG 402 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh-hhhhhhHHHHHHhcc
Confidence 8888888888888888888888888888888886 667777777765443
No 35
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.14 E-value=1.7e-10 Score=102.23 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=60.5
Q ss_pred CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006 75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 147 (414)
Q Consensus 75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~ 147 (414)
..++.|+|+|++++.+ |++| +++. ...|++|.+|.+.++|+||.+|.+|.+|++..|+|+|+.|||..
T Consensus 4 ~~~~vV~l~Y~l~~~d--G~v~-dst~--~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 4 AKDLVVSLAYQVRTED--GVLV-DESP--VSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred CCCCEEEEEEEEEeCC--CCEE-EecC--CCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCC
Confidence 3688999999999865 9988 5554 36899999999999999999999999999999999999999954
No 36
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.12 E-value=5.4e-11 Score=111.25 Aligned_cols=123 Identities=27% Similarity=0.439 Sum_probs=111.3
Q ss_pred CCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006 176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 255 (414)
Q Consensus 176 ~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~ 255 (414)
....++.+++|...+-.+.+++..|.+..|+..|+.||. ++|.. +.+|.+++.++++++.+..|+
T Consensus 104 ~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~----lnp~~-----------a~l~~kr~sv~lkl~kp~~ai 168 (377)
T KOG1308|consen 104 AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIE----LNPPL-----------AILYAKRASVFLKLKKPNAAI 168 (377)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccc----cCCch-----------hhhcccccceeeeccCCchhh
Confidence 345688999999999999999999999999999999999 77776 789999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
.+|..|++++|+.++.|-.+|.|+..+|+|++|..+|..|++++-+ .++-..|..+..
T Consensus 169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d--E~~~a~lKeV~p 226 (377)
T KOG1308|consen 169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD--EANSATLKEVFP 226 (377)
T ss_pred hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc--HHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999865 345555665543
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.11 E-value=1.4e-09 Score=114.96 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=87.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+...|..++..|++.+|+..|.+++. +.|.. ..+|.++|.++..+|+|++|+.++.++++++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~----l~P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIE----LDPRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44567788899999999999999999998 66665 4567777777777778888888777777777
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
|+++.+++.+|.++..+|++++|+.+|+++++++|++ ..+...+..+.
T Consensus 396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~-~~~~~~la~~~ 443 (615)
T TIGR00990 396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF-IFSHIQLGVTQ 443 (615)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-HHHHHHHHHHH
Confidence 7777777788887777788888888888887777776 44554454444
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.11 E-value=1.3e-09 Score=89.04 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=91.8
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+...|..+++.|+|.+|+..|.+++. ..|.+. ....+++++|.++++.++|..|+..+..++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK----KYPKST--------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcc--------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 4566788899999999999999999998 344331 1245788999999999999999999999999998
Q ss_pred Cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 267 AH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 267 ~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
++ +.+++.+|.++..++++++|+..|.++++..|++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 85 6789999999999999999999999999999997
No 39
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=2.3e-09 Score=94.52 Aligned_cols=111 Identities=21% Similarity=0.315 Sum_probs=95.6
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
.....+..+...|..++..|+|.+|+.+|.+++.. .+...+ ...++.|+|.++.++|+|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKL----EEDPND--------RSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hhccch--------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556888899999999999999999999999983 332210 146899999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q 015006 261 VLDANPAHVKGLYRRGMAYMALGE--------------FEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 261 al~~dp~~~ka~~r~g~a~~~l~~--------------~~eA~~~~~~al~l~P~n~ 303 (414)
++.+.|.+..+++.+|.++..+|+ +++|++.+++++.++|++-
T Consensus 98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999999988 6788888888888888863
No 40
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.09 E-value=9.4e-10 Score=102.89 Aligned_cols=103 Identities=22% Similarity=0.449 Sum_probs=98.4
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+.+..+.|+.++.+|+|..|+..|..|++ .+|.+ ..+++.+|.+|+-+|+-.-|+.++.++|++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~-----------Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNN-----------YQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchh-----------HHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 477788999999999999999999999999 78877 778999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.|+..-|...||.+++++|++++|..+|.++|+.+|++
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999976
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=6.1e-10 Score=85.90 Aligned_cols=83 Identities=29% Similarity=0.514 Sum_probs=71.6
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
.|+|..|+..|.+++. ..|.+. ....++++|.||+++|+|++|+..+++ +..++.++..++-+|+|
T Consensus 2 ~~~y~~Ai~~~~k~~~----~~~~~~---------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE----LDPTNP---------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHH----HHCGTH---------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHH----HCCCCh---------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 5899999999999999 344321 145778899999999999999999999 88999999999999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 015006 279 YMALGEFEEAQRDFEMM 295 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~a 295 (414)
+..+|+|++|+..|++|
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 42
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.4e-10 Score=95.15 Aligned_cols=69 Identities=26% Similarity=0.396 Sum_probs=61.5
Q ss_pred CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccC
Q 015006 75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKF 147 (414)
Q Consensus 75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~ 147 (414)
..|+.|+++|++++.| |++| ||+.. ...|+.|.+|.|++++|||.||.+|.+|+...|.|||+.|||..
T Consensus 4 ~k~~~V~i~Y~~~~~d--g~v~-Dtt~e-~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~ 72 (174)
T COG1047 4 EKGDVVSLHYTLKVED--GEVV-DTTDE-NYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEY 72 (174)
T ss_pred cCCCEEEEEEEEEecC--CcEE-Ecccc-cCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCC
Confidence 3689999999999976 8888 55542 36799999999999999999999999999999999999999954
No 43
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.02 E-value=1.2e-09 Score=79.74 Aligned_cols=64 Identities=22% Similarity=0.416 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+++|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3589999999999999999999999999999999999999999999999999999999999987
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.01 E-value=6.7e-09 Score=113.71 Aligned_cols=116 Identities=11% Similarity=0.101 Sum_probs=97.2
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+...|..+.+.|++.+|+..|.+++. +.|.+ ..+++|+|.++..+|++++|+..+.++++++|
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~----l~Pd~-----------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALE----LEPNN-----------SNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 3455667777788888888888888887 67776 67899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
+++.+++++|.++..+|++++|+..|++|++++|++ ..+......+..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRF 725 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999987 566665555544433
No 45
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.01 E-value=9.9e-09 Score=90.02 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=93.2
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
...+..+...|..++..|+|.+|+..|.+|+.. .+... ....++.|+|.++.++|++++|+..+.+++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l----~~~~~--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL----EIDPY--------DRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cccch--------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346888899999999999999999999999983 33221 124589999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCHHHHH
Q 015006 263 DANPAHVKGLYRRGMAYM-------ALGEFE-------EAQRDFEMMMKVDKSSEPDAT 307 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~-------~l~~~~-------eA~~~~~~al~l~P~n~~~~~ 307 (414)
.++|.+..+++.+|.++. .+|+++ +|+..|++++.++|.+...+.
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~ 158 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQ 158 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHH
Confidence 999999999999999999 777776 556666677888988644333
No 46
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.6e-09 Score=103.11 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=98.0
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.|..+.-+|..+|-.|++..|...+.++|. +.|.+ ..+|.-||..|+..++-.+-..++++|..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~-----------~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAF-----------NSLYIKRAAAYADENQSEKMWKDFNKAEDL 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHh----cCccc-----------chHHHHHHHHHhhhhccHHHHHHHHHHHhc
Confidence 588899999999999999999999999999 67766 567999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
||.|+..||.||+.++-+++|++|+.+|++|+.|+|+|
T Consensus 390 dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~ 427 (606)
T KOG0547|consen 390 DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPEN 427 (606)
T ss_pred CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh
Confidence 99999999999999999999999999999999999997
No 47
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=1.5e-09 Score=101.47 Aligned_cols=133 Identities=21% Similarity=0.342 Sum_probs=112.9
Q ss_pred CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006 175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 254 (414)
Q Consensus 175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A 254 (414)
...++-.+++.+.+..+.+......++|.+++..+.+.++ ..|.. ...+...+--++.|+..-+++-+|
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk----~ep~~-------~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK----NEPEE-------TMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh----cCCcc-------cceeeeeeheeeecccccCCHHHH
Confidence 3456778888888888888999999999999999999998 45542 112233455578999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
|+.|+.+|.++|+++.++..||.||+.-..|+.|+.+|++|++++++| ..++.-+.+.++..++
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn-~~~reGle~Akrlkkq 390 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN-TRAREGLERAKRLKKQ 390 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6788888887765443
No 48
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.99 E-value=3.9e-09 Score=80.69 Aligned_cols=98 Identities=33% Similarity=0.587 Sum_probs=87.1
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|..++..|++.+|+..|.+++. ..|.+ ..++.++|.++...+++++|+..+..++.+.|.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE----LDPDN-----------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh----cCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45677888889999999999999998 45554 3578899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
..+++.+|.++..+|+++.|...+.++++++|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999988874
No 49
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.97 E-value=1.1e-09 Score=81.03 Aligned_cols=66 Identities=29% Similarity=0.499 Sum_probs=61.8
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA 264 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~ 264 (414)
|..+...|..++..|+|.+|+..|++|+. ++|.+ ..+++|+|.||.+++ +|.+|+.+++++|++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~----~~p~~-----------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE----LDPNN-----------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH----HSTTH-----------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999 56766 779999999999999 799999999999999
Q ss_pred CC
Q 015006 265 NP 266 (414)
Q Consensus 265 dp 266 (414)
+|
T Consensus 68 ~P 69 (69)
T PF13414_consen 68 DP 69 (69)
T ss_dssp ST
T ss_pred Cc
Confidence 98
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=8.5e-09 Score=102.17 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=101.4
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+++.|...|..+.|.+|...|++++..+....+... ....+++|+|.++.|++.|.+|+..++++|.+.|.
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~--------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKI--------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccccc--------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 4678899999999999999999999965443333220 23578999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
++.+|--.|.+|..+|+++.|+..|.+||.++|+| .-+...|..+-
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n-~~~~~lL~~ai 533 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN-IFISELLKLAI 533 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc-HHHHHHHHHHH
Confidence 99999999999999999999999999999999998 55666666543
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=3.3e-08 Score=89.15 Aligned_cols=127 Identities=11% Similarity=0.121 Sum_probs=106.2
Q ss_pred ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006 198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 277 (414)
Q Consensus 198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~ 277 (414)
..++..+++..|.+++. ..|.+ ...+.++|.+|+.+++++.|+..+.++++++|+++.+++.+|.
T Consensus 51 ~~~~~~~~i~~l~~~L~----~~P~~-----------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIR----ANPQN-----------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 46788999999999999 78888 6799999999999999999999999999999999999999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccc
Q 015006 278 AY-MALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISE 341 (414)
Q Consensus 278 a~-~~l~~--~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (414)
++ ...|+ +++|++.|+++++++|++ ..+...+..+........ .....+.+++...+.+.+.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~-~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYA-QAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCccH
Confidence 86 67787 599999999999999998 678888887766555444 3455677776655544433
No 52
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.91 E-value=1.4e-08 Score=86.76 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=88.3
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006 206 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285 (414)
Q Consensus 206 ~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~ 285 (414)
...|.+++. ++|. .+.++|.++..+|+|++|+..|.+++.++|.+..+++.+|.++..+|++
T Consensus 13 ~~~~~~al~----~~p~--------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 13 EDILKQLLS----VDPE--------------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHHH----cCHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH
Confidence 356777777 4443 2557899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006 286 EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD 333 (414)
Q Consensus 286 ~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (414)
++|+..|.+|++++|++ ..+...+..+.....+..+ ....+.....
T Consensus 75 ~~A~~~y~~Al~l~p~~-~~a~~~lg~~l~~~g~~~e-Ai~~~~~Al~ 120 (144)
T PRK15359 75 TTAINFYGHALMLDASH-PEPVYQTGVCLKMMGEPGL-AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHcCCHHH-HHHHHHHHHH
Confidence 99999999999999998 6788888887765544333 3444444443
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.91 E-value=3.6e-08 Score=91.12 Aligned_cols=114 Identities=20% Similarity=0.288 Sum_probs=97.6
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+...|..++..|+|..|+..|.+++. ..|.++ ....+++++|.+++++++|++|+..+.++++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~----~~p~~~--------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALES----RYPFSP--------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCch--------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 366778899999999999999999999998 556542 12357899999999999999999999999999
Q ss_pred CCCcHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 265 NPAHVK---GLYRRGMAYMAL--------GEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 265 dp~~~k---a~~r~g~a~~~l--------~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
.|+++. ++|.+|.++..+ |++++|+..|++++..+|++ ..+...+.
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~ 156 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKK 156 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHH
Confidence 998876 799999999987 88999999999999999998 44443333
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=3.9e-09 Score=106.37 Aligned_cols=116 Identities=16% Similarity=0.271 Sum_probs=74.8
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
.+.|...||.+--+++++.|+++|.+|+. ++|.. +-+|.-+|.=+....+|+.|..+|.+||.++
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~f-----------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRF-----------AYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCcc-----------chhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 67899999999999999999999999999 67755 3445555555555555555555555555555
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
|.+-.|||-+|.+|+++++++.|.-.|++|++++|.| ..+.-.+..+..++
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n-svi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN-SVILCHIGRIQHQL 536 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc-hhHHhhhhHHHHHh
Confidence 5555555555555555555555555555555555555 33444444443333
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=3.8e-08 Score=102.67 Aligned_cols=103 Identities=16% Similarity=0.044 Sum_probs=87.6
Q ss_pred HHHHHHhhhcc--ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNR--LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 185 ~a~~~k~~Gn~--~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
.+..+...++. +...+++.+|+..+.+|+. ++|.+ ..++.++|.++..+|++++|+..+++|+
T Consensus 301 La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~----ldP~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al 365 (553)
T PRK12370 301 LAECYLSMAQMGIFDKQNAMIKAKEHAIKATE----LDHNN-----------PQALGLLGLINTIHSEYIVGSLLFKQAN 365 (553)
T ss_pred HHHHHHHHHHcCCcccchHHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34444444432 3366789999999999999 78887 5688889999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+++|+++.+++.+|.++..+|++++|+..|++|++++|.+
T Consensus 366 ~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 366 LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999987
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=98.86 E-value=6.5e-08 Score=100.96 Aligned_cols=129 Identities=11% Similarity=0.087 Sum_probs=106.1
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+...|..+...|++.+|+..|.+|+. +.|.+ ..+++++|.++..+|++++|+..+.++++++|.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANL----LSPIS-----------ADIKYYYGWNLFMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 355678888899999999999999999 78887 668999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-KSSEPDATAALSKLKKQRQEVESKARKQFKGLFD 333 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~-P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (414)
++.+++.++.+++.+|++++|+..++++++.. |++ +.+...+..+.....+..+. ...+.++..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~-~~~~~~la~~l~~~G~~~eA-~~~~~~~~~ 469 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN-PILLSMQVMFLSLKGKHELA-RKLTKEIST 469 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHhCCCHHHH-HHHHHHhhh
Confidence 99888888888999999999999999999886 555 66777777776554433333 334454443
No 57
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=5.1e-09 Score=104.05 Aligned_cols=98 Identities=27% Similarity=0.399 Sum_probs=92.3
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
....|..|+-.|+|.+|+.+|+.||. ..|.+ ..+++.+|+.+..-.+..+|+..|.+||.+.|..
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~----v~Pnd-----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQ----VKPND-----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHh----cCCch-----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 34578888899999999999999999 89988 7899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
+.+.|++|.+++.+|.|++|+..|..||.+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999765
No 58
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.84 E-value=1.6e-07 Score=76.44 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=99.4
Q ss_pred hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259 (414)
Q Consensus 180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~ 259 (414)
..-++....+--+|..+-..|+...|++.|.++|. +.|.. .++|+|+|.++.-.++.++|+.+.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~----l~P~r-----------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALC----LAPER-----------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH----hcccc-----------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 44566777888889999999999999999999999 45554 7899999999999999999999999
Q ss_pred HHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 260 KVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 260 ~al~~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+|+++.... ..+|..||..|..+|+-+.|..+|+.|-++-... ++..|-.+.
T Consensus 102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F---Ar~QLV~lN 157 (175)
T KOG4555|consen 102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF---AREQLVELN 157 (175)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH---HHHHHHhcC
Confidence 999987543 5689999999999999999999999999997543 555554443
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=8.2e-08 Score=92.19 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=89.4
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
.+..+.++..+.++|.. .+.++ ......|+++|.+|..+|++.+|+.++.++++++|+++.+|+.+|.+
T Consensus 39 ~~~~e~~i~~~~~~l~~----~~~~~-------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~ 107 (296)
T PRK11189 39 TLQQEVILARLNQILAS----RDLTD-------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY 107 (296)
T ss_pred chHHHHHHHHHHHHHcc----ccCCc-------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35677899999998862 22221 12356899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
+..+|++++|+..|++|++++|++ ..+...+..+...
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~ 144 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLELDPTY-NYAYLNRGIALYY 144 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 999999999999999999999998 5666666665443
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=5.5e-08 Score=86.83 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=73.7
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------------HHhhhhhHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------------VFVGKRNLLHL 239 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------------~~~~~~~~~~~ 239 (414)
-..+....+.|..++..|++..|....++||+ .+|++..... .+..-...+++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~----~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLN 107 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALE----HDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhh
Confidence 34577788999999999999999999999999 6776621100 01111223445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 240 NVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 240 N~a~~~~kl~~~~~A~~~~~~al~~--dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
|-|.-+..+|.|++|...+.+|+.. -+.-+..+-++|.|.++.|+++.|...|+++|+++|++
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 5555555555555555555555432 12335666677777777777777777777777777776
No 61
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.84 E-value=2.1e-08 Score=74.85 Aligned_cols=67 Identities=24% Similarity=0.431 Sum_probs=61.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006 242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 309 (414)
Q Consensus 242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~ 309 (414)
...|++.++|..|+..+++++.++|+++.+++.+|.++..+|+|.+|+.+|++++++.|++ ..+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~-~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD-PDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc-HHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999987 444433
No 62
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.83 E-value=4.6e-08 Score=103.39 Aligned_cols=115 Identities=7% Similarity=0.052 Sum_probs=99.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+...|......|.|++|...+..++. +.|++ ..+..|+|.++.+++++++|+..|.++|..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~-----------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDS-----------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCc-----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 66677788888899999999999999999 77877 7789999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
|+++.+++.+|.++.++|+|++|++.|++++..+|++ +.+.-.+..+-+.
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~-~~~~~~~a~~l~~ 200 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF-ENGYVGWAQSLTR 200 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988876 5566666555443
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.82 E-value=1.2e-07 Score=85.71 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=86.1
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|..++..|+|.+|+..|.+++.. .+. .....++.++|.|+..+|++.+|+..+.+++..+|.+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIED----PLY---------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc----ccc---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 445566666777777777777777762 110 1124578889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+.+++.+|.++..+|++++|+..+++++.+.|.+ ......+..+.
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 213 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIA 213 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 9999999999999999999999999999997776 44444444443
No 64
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.82 E-value=7.4e-08 Score=105.64 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=88.1
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
.|++.+|+..|.+++. +.|. ..++.|+|.++.++|++++|+..+.+++.++|+++.+++++|.+
T Consensus 589 ~Gr~~eAl~~~~~AL~----l~P~------------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 589 PGQPELALNDLTRSLN----IAPS------------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred CCCHHHHHHHHHHHHH----hCCC------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3666666666666665 3442 45789999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
+..+|++++|+..|++|++++|++ ..+...+..+......
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~-~~a~~nLA~al~~lGd 692 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDD-PALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCC
Confidence 999999999999999999999998 6788777777655443
No 65
>PRK15331 chaperone protein SicA; Provisional
Probab=98.82 E-value=6.7e-08 Score=82.68 Aligned_cols=101 Identities=9% Similarity=0.157 Sum_probs=89.8
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
.+.+-..|-.+|..|+|.+|...|+-... .++.+ ...+..+|.|+..+++|++|+..+..|..++
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCI----YDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44566778889999999999999987666 56665 4578999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
++++...|+.|+|++.+|+.+.|+..|..|+. .|.+
T Consensus 102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999999999999998 4554
No 66
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.81 E-value=6.2e-08 Score=81.33 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=90.0
Q ss_pred HHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 015006 207 AKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFE 286 (414)
Q Consensus 207 ~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~ 286 (414)
..|.+++. ..|.+ ...+.++|.++++.+++.+|+..+.+++.++|.++.+++++|.++..+|+++
T Consensus 4 ~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 4 ATLKDLLG----LDSEQ-----------LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hhHHHHHc----CChhh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 35677777 66665 5678899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006 287 EAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334 (414)
Q Consensus 287 eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (414)
+|+..|+++++++|++ ......+..+........+ ....+......
T Consensus 69 ~A~~~~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~-A~~~~~~al~~ 114 (135)
T TIGR02552 69 EAIDAYALAAALDPDD-PRPYFHAAECLLALGEPES-ALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHhcCCCC-hHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh
Confidence 9999999999999997 6777777777655543332 23344444443
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.80 E-value=1.6e-07 Score=84.94 Aligned_cols=99 Identities=26% Similarity=0.369 Sum_probs=77.0
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+...|..++..|+|.+|+..|.+++. ..|.+ ..++.++|.++..+|++++|+..+.+++++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALE----HDPDD-----------YLAYLALALYYQQLGELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 366677788888888899999998888887 44544 456777777888888888888888888887
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.|.+..+++++|.++..+|++++|+..|++++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 95 NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 7777777777787777778888887777777765
No 68
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=7.4e-08 Score=97.30 Aligned_cols=119 Identities=19% Similarity=0.337 Sum_probs=101.1
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
+.|.-.|..|.|+++|+.|.-.|++|+. ++|.+ ..+.+-++..+.++|+.++|+..+++|+.+||
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~----INP~n-----------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVE----INPSN-----------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhc----CCccc-----------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 3566778888888888888888888888 78877 66777788889999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
.|+-..|.+|..+..+++|++|+..|++.-++-|++ .-+...+.++.+++....
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTD 608 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccch
Confidence 999999999999999999999999999999999986 678888888877776544
No 69
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.76 E-value=1.1e-07 Score=101.17 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=64.8
Q ss_pred hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCc
Q 015006 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK----SIEACNKVLDANPAH 268 (414)
Q Consensus 193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~----A~~~~~~al~~dp~~ 268 (414)
|..++..|++.+|+..|.+++. ..|.+ ..++.++|.++..+|++.+ |+..|.++++++|++
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~----~~p~~-----------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~ 283 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALA----RGLDG-----------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN 283 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC
Confidence 5566677888888888888877 44544 3455556666666666654 566666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
+.++..+|.++..+|++++|+..|++++.++|++ ..+...+..+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~-~~a~~~La~~ 327 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDL-PYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 6666666666666666666666666666666655 3444444433
No 70
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.74 E-value=3.4e-08 Score=72.59 Aligned_cols=67 Identities=28% Similarity=0.489 Sum_probs=60.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~ 312 (414)
+++.|+|.+|+..+++++..+|++..+++.+|.+++..|++++|...|++++..+|++ +.+...+..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~-~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN-PEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH-HHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH-HHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999996 666655544
No 71
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.74 E-value=2.3e-07 Score=87.05 Aligned_cols=107 Identities=11% Similarity=0.153 Sum_probs=89.3
Q ss_pred Hhhhccc-cccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 015006 190 RVTGNRL-FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA- 267 (414)
Q Consensus 190 k~~Gn~~-fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~- 267 (414)
...+..+ ++.|+|.+|+..|.+.+. ..|.+. ....+++-+|.+|+..|+|++|+..|.+++...|+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~----~yP~s~--------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK----KYPDST--------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3444444 567999999999999999 455441 22457888999999999999999999999998887
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006 268 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 309 (414)
Q Consensus 268 --~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~ 309 (414)
.+.|++++|.++..+|++++|+..|+++++..|++ ..+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s-~~a~~A 256 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT-DGAKQA 256 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHH
Confidence 47899999999999999999999999999999997 344433
No 72
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-07 Score=92.56 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=103.2
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
--.||-+--+++.+.|+..|++||+ ++|.. ..++.-+|.=|+.|++-..|+..+.+|++++|.+-
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALk----LNp~~-----------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy 398 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALK----LNPKY-----------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY 398 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHh----cCcch-----------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH
Confidence 3468888888999999999999999 78776 67888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (414)
+|||-+|++|.-++...-|+-.|++|+++.|++ +.+...|..|..++....+ ..+.|++..
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnD-sRlw~aLG~CY~kl~~~~e-AiKCykrai 459 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPND-SRLWVALGECYEKLNRLEE-AIKCYKRAI 459 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHHhccHHH-HHHHHHHHH
Confidence 999999999988888888888899999988886 6788888888766654333 244454444
No 73
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=5.9e-08 Score=89.90 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
=+-|.-+++.++|.+|+..|++||+++|.|+--|.+||.||.+||+|+.|+++++.||.+||.. ..+.-.|..+.-.+.
T Consensus 85 K~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-skay~RLG~A~~~~g 163 (304)
T KOG0553|consen 85 KNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-SKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH-HHHHHHHHHHHHccC
Confidence 3566777899999999999999999999999999999999999999999999999999999986 567777777766665
Q ss_pred HHHHHHHHHHHhhccCCCCCc
Q 015006 319 EVESKARKQFKGLFDKKPGEI 339 (414)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~ 339 (414)
+....... |++.+.-.+...
T Consensus 164 k~~~A~~a-ykKaLeldP~Ne 183 (304)
T KOG0553|consen 164 KYEEAIEA-YKKALELDPDNE 183 (304)
T ss_pred cHHHHHHH-HHhhhccCCCcH
Confidence 55555444 777777665544
No 74
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.71 E-value=2e-07 Score=99.09 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=90.9
Q ss_pred HHHhhhccccccccHHH----HHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 188 KIRVTGNRLFKEGKFEL----AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~----A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
.+...|..++..|++.+ |+..|++++. +.|.+ ..++.++|.++.++|++++|+..+++++.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~----l~P~~-----------~~a~~~lg~~l~~~g~~~eA~~~l~~al~ 312 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ----FNSDN-----------VRIVTLYADALIRTGQNEKAIPLLQQSLA 312 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34567888899999986 8999999999 67776 67899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
++|+++.+++.+|.++..+|++++|+..|++++..+|++
T Consensus 313 l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 313 THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999999999986
No 75
>PLN02789 farnesyltranstransferase
Probab=98.71 E-value=3.3e-07 Score=88.54 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 015006 187 EKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--RKSIEACNKVLD 263 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~--~~A~~~~~~al~ 263 (414)
..+..+|..+.+.| ++.+|+..+.+++. .+|.+ ..++++++.++.+++.+ .+++..+.++|+
T Consensus 72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~----~npkn-----------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 72 TVWHFRRLCLEALDADLEEELDFAEDVAE----DNPKN-----------YQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHH----HCCcc-----------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 34555666666666 57888888888888 67776 66899999999999874 788999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
++|.|..||+.|+.++..+|+|++|++.+.++|+++|.| ..+......+.
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N-~sAW~~R~~vl 186 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN-NSAWNQRYFVI 186 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc-hhHHHHHHHHH
Confidence 999999999999999999999999999999999999998 45665555543
No 76
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.70 E-value=8e-07 Score=82.67 Aligned_cols=125 Identities=25% Similarity=0.325 Sum_probs=100.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-..|..++..|+|..|+..|++.+. ..|..+ ....+.+++|.+|+++++|.+|+..+++.++..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~----~yP~s~--------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDN----RYPFGP--------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCh--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 44566778888999999999999999999 555552 234567899999999999999999999999999
Q ss_pred CCc---HHHHHHHHHHHHHcCC------------------HHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHHH
Q 015006 266 PAH---VKGLYRRGMAYMALGE------------------FEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVES 322 (414)
Q Consensus 266 p~~---~ka~~r~g~a~~~l~~------------------~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~~ 322 (414)
|++ ..|+|.+|.++..++. ...|+..|+..++..|+.. ++++..+..++.++.+.+-
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 876 5689999999866651 3578899999999999864 4566666777766665543
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.9e-07 Score=97.39 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=101.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+......++.+++.+++++|+..+.+++. ..|++ ...++++|.|+.++|+|++|+..|++++..+
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~----~~p~~-----------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFS----GGSSS-----------AREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh----cCCCC-----------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 55677889999999999999999999999 78888 7899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
|++++++..+|.+++.+|+.++|...|++|+++..+-.+.....+..+..
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA 234 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976543333344444443
No 78
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.70 E-value=3.1e-07 Score=76.89 Aligned_cols=105 Identities=23% Similarity=0.386 Sum_probs=90.4
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-..|...++.|+|..|++.|+.... .-|.. +....+.++++-+|++.++|..|+..+++-|++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~----ryP~g--------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDT----RYPFG--------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh----cCCCC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 55666778888999999999999998887 34443 2234688899999999999999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCC
Q 015006 266 PAHV---KGLYRRGMAYMALGE---------------FEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 266 p~~~---ka~~r~g~a~~~l~~---------------~~eA~~~~~~al~l~P~n 302 (414)
|.++ -|+|++|.+++.+.. ...|..+|++.+..-|++
T Consensus 78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 9875 589999999999987 889999999999999987
No 79
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.69 E-value=3.2e-07 Score=83.51 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=103.8
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..++..|..+|..|+|..|+..+.++.. ..|.+ ..+++-+|.||.++|+++.|...+.+++++.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~----l~p~d-----------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~ 165 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAAR----LAPTD-----------WEAWNLLGAALDQLGRFDEARRAYRQALELAP 165 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhc----cCCCC-----------hhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence 3445589999999999999999999999 88888 66899999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
+.+..+-++|..++-.|+++.|...+..+...-+.+ ..+..+|..+-...
T Consensus 166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad-~~v~~NLAl~~~~~ 215 (257)
T COG5010 166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD-SRVRQNLALVVGLQ 215 (257)
T ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHhhc
Confidence 999999999999999999999999999999887766 67888888775443
No 80
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.5e-07 Score=88.22 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=110.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
...+--.|-++...++-..|+..|++|++ ++|.+ ..+++-+|.+|--|+...=|+-++++|+.+.
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvd----i~p~D-----------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVD----INPRD-----------YRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHh----cCchh-----------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 34455678889999999999999999999 77877 7899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (414)
|++...|--+|+||.++++.++|+.+|.+|+...-.+ ..+...|.++.+.+...++. .+.|.+..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~~l~~LakLye~l~d~~eA-a~~yek~v 493 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GSALVRLAKLYEELKDLNEA-AQYYEKYV 493 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHhHHHH-HHHHHHHH
Confidence 9999999999999999999999999999999997765 56777888888777765543 33444333
No 81
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.67 E-value=1e-07 Score=93.78 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG---LYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka---~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
...++|+|.+|+++++|++|+..|++||+++|++..+ ||++|.||..+|++++|+++|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6799999999999999999999999999999999865 999999999999999999999999997
No 82
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.66 E-value=6.5e-07 Score=81.09 Aligned_cols=124 Identities=24% Similarity=0.347 Sum_probs=96.5
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-..|..+|..|+|.+|+..|++.+.. .|.+ .....+.+.+|.++++.++|..|+..++..+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~----~P~s--------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR----YPNS--------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-----TTS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCCC--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 667788999999999999999999999984 3433 2335678899999999999999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 015006 266 PAHV---KGLYRRGMAYMALG-----------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE 321 (414)
Q Consensus 266 p~~~---ka~~r~g~a~~~l~-----------~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~ 321 (414)
|.++ .|+|.+|.+++.+. ...+|+..|+..++..|++. .+++..+..+...+.+.+
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH
Confidence 9764 59999999987764 34589999999999999874 456666677766665544
No 83
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=7.1e-08 Score=73.04 Aligned_cols=66 Identities=24% Similarity=0.405 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDAN-------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d-------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
..+.+++|+|.+|..+|+|++|+.++++++.+. |..+.+++++|.++..+|++++|++.|++|+++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 457799999999999999999999999999762 234789999999999999999999999999986
No 84
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.9e-07 Score=86.91 Aligned_cols=114 Identities=24% Similarity=0.350 Sum_probs=97.7
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhh-hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG-KRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~-~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
.+..++-+|..++-..+...|+..|+++|+ +.|...+....... -.....-+.|.-.+|.|+|..|.+.|+.+|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~----ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~ 277 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALR----LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN 277 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhc----cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence 367888999999999999999999999999 78876554433222 2234566788889999999999999999999
Q ss_pred hCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 264 ANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 264 ~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+||+| ++.|++||.+...+|+..+|+.++..|++|||.-
T Consensus 278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy 320 (486)
T KOG0550|consen 278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY 320 (486)
T ss_pred CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH
Confidence 99975 7889999999999999999999999999999874
No 85
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.63 E-value=5.2e-07 Score=97.74 Aligned_cols=112 Identities=11% Similarity=0.175 Sum_probs=99.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+...|..+.+.|++.+|+..|.+++. ..|.+ ..++.++|.++...+++.+|+..+.+++..+
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~----~~P~~-----------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~ 113 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALS----LEPQN-----------DDYQRGLILTLADAGQYDEALVKAKQLVSGA 113 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44467788889999999999999999999 67877 5577899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
|+++. ++.+|.++...|++++|+..|+++++++|++ ..+...+..+.
T Consensus 114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~-~~~~~~la~~l 160 (765)
T PRK10049 114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT-QQYPTEYVQAL 160 (765)
T ss_pred CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Confidence 99999 9999999999999999999999999999998 55655555543
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.62 E-value=5.5e-07 Score=101.92 Aligned_cols=123 Identities=18% Similarity=0.296 Sum_probs=96.5
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH---HHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG---KVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~---~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
+..+...|..+++.|++++|+..|++++. ..|.+.... ..+......+..+++.++++.+++++|+..+.+++
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~----~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al 378 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALA----LDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQAR 378 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456778888888888888888888888 455442111 11111223345677899999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
.++|.++.+++.+|.++..+|++++|++.|+++++++|++ ..+...+..+
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~~~L~~l 428 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAVRGLANL 428 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999998 4555555444
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.61 E-value=6.5e-07 Score=80.08 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=92.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+.-+++-|..++.+|+|++|...|.+|+. .|.-. .....+.|++.|.+++|+++.|..+++++|+++
T Consensus 103 GdVLNNYG~FLC~qg~~~eA~q~F~~Al~-----~P~Y~--------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 103 GDVLNNYGAFLCAQGRPEEAMQQFERALA-----DPAYG--------EPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred cchhhhhhHHHHhCCChHHHHHHHHHHHh-----CCCCC--------CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 56688999999999999999999999998 33221 124589999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
|+++-++.-+++.++..|+|-.|...+++...--+-+
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999988776654
No 88
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.60 E-value=9.2e-07 Score=87.85 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=76.0
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 270 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k 270 (414)
..+..+.+.|+|.+|+..|.+++. ..|.+.. .....++.++|.++++.+++++|+..+.++++.+|.+..
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 215 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEK----LGGDSLR------VEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR 215 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHH----hcCCcch------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH
Confidence 344444455555555555555544 2221100 012345678888888889999999999999888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~ 312 (414)
+++.+|.++...|++++|+..|++++..+|.+...+...+..
T Consensus 216 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 888899999999999999999999888888753333333433
No 89
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=1.7e-07 Score=92.31 Aligned_cols=109 Identities=24% Similarity=0.277 Sum_probs=96.4
Q ss_pred hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc---CCHHHHH
Q 015006 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL---GECRKSI 255 (414)
Q Consensus 179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl---~~~~~A~ 255 (414)
+-+..+.++.++.+||..|-.+....|+..|.+++.+ .|.. ..+|.|+|++++|. ++--.|+
T Consensus 367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----~~~~-----------~~~l~nraa~lmkRkW~~d~~~Al 431 (758)
T KOG1310|consen 367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----VPDA-----------IYLLENRAAALMKRKWRGDSYLAL 431 (758)
T ss_pred hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----ccch-----------hHHHHhHHHHHHhhhccccHHHHH
Confidence 3577778999999999999999999999999999984 3333 77999999999986 4677899
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 256 EACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 256 ~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.+|..||+++|...||+||++.|+..++++.+|+.+...+....|.+
T Consensus 432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999999999877766677754
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.58 E-value=1.4e-07 Score=68.71 Aligned_cols=64 Identities=17% Similarity=0.400 Sum_probs=57.1
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
..|..+++.|+|.+|+..|++++. ..|.+ ..+++.+|.|++.+|++++|+..+.++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALK----QDPDN-----------PEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHC----CSTTH-----------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 468889999999999999999999 66766 67999999999999999999999999999999875
No 91
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.57 E-value=1.2e-06 Score=95.38 Aligned_cols=113 Identities=25% Similarity=0.409 Sum_probs=94.2
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+...|..++..|+|.+|+..|.+++. ..|.+ ..++..+|.+++..++|.+|+..+.+++..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~----~~~~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 188 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALA----IDPRS-----------LYAKLGLAQLALAENRFDEARALIDEVLTA 188 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCC-----------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 466777899999999999999999999998 56655 457788888899999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
+|.+..+++.+|.++...|++++|+..|++++.++|.+ ..+...+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~~~~~~ 236 (899)
T TIGR02917 189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN-PAVLLALATI 236 (899)
T ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Confidence 99888999999999999999999999999999998887 4444444433
No 92
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.57 E-value=1.2e-06 Score=99.14 Aligned_cols=120 Identities=17% Similarity=0.185 Sum_probs=96.4
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHH-------------------------------Hhhhhh
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKV-------------------------------FVGKRN 235 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~-------------------------------~~~~~~ 235 (414)
..+...|..++..|++.+|+..|.+++. ..|.+...... ...+..
T Consensus 386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~ 461 (1157)
T PRK11447 386 YAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN 461 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 3456678899999999999999999998 55554321100 011123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
..+.++|.++...+++++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++ ..+...+.
T Consensus 462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~-~~~~~a~a 536 (1157)
T PRK11447 462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND-PEQVYAYG 536 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHH
Confidence 3566788999999999999999999999999999999999999999999999999999999999987 45544443
No 93
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.56 E-value=2.6e-07 Score=87.92 Aligned_cols=117 Identities=24% Similarity=0.272 Sum_probs=95.2
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+...|..+.+.|++.+|+..|++|++ ..|.+ ..+..+++.+++.+|++.++...+.......
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~P~~-----------~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALE----LDPDD-----------PDARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 45577888899999999999999999999 78877 4577788999999999999888888888888
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
|.++..+..+|.++..+|++++|+..|+++++.+|+| +.+...+..+.....
T Consensus 211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PLWLLAYADALEQAG 262 (280)
T ss_dssp HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT---
T ss_pred cCHHHHHHHHHHHhccccccccccccccccccccccc-ccccccccccccccc
Confidence 8888888999999999999999999999999999997 667777776654443
No 94
>PLN02789 farnesyltranstransferase
Probab=98.55 E-value=1.7e-06 Score=83.67 Aligned_cols=108 Identities=15% Similarity=0.128 Sum_probs=93.9
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHH
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDANPAHVKGLYR 274 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~dp~~~ka~~r 274 (414)
+.+.+.+.+|+..+.++|. ++|.+ .+++.+++.++.+++ .+.+++..+++++..+|++..+|+.
T Consensus 47 l~~~e~serAL~lt~~aI~----lnP~~-----------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIR----LNPGN-----------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHH----HCchh-----------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 4566789999999999999 78877 789999999999998 6899999999999999999999999
Q ss_pred HHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 275 RGMAYMALGEF--EEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 275 ~g~a~~~l~~~--~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
|+.++..+++. ++++..+.++++++|.| -.+.....-+...+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkN-y~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKN-YHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhhh
Confidence 99999999974 78899999999999998 5666666665555443
No 95
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.54 E-value=1.5e-06 Score=94.70 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=102.9
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+...|..++..|+|.+|+..|.+++. ..|.+ ..+.+++.++.++|++.+|+..+.++++.+|+
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALK----RAPSS------------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCc------------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 345577888899999999999999998 44443 35678899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK 335 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (414)
++.+++.+|.++..+|++++|+..|+++++.+|++ ..+...+..+...... .+....+.+.+...
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~--~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN-AVVLNNLAWLYLELKD--PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCc--HHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999987 5666666666554443 23455555555543
No 96
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.53 E-value=1.3e-06 Score=75.62 Aligned_cols=101 Identities=28% Similarity=0.316 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCcHHH
Q 015006 202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL----------GECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl----------~~~~~A~~~~~~al~~dp~~~ka 271 (414)
|+.|.+.|..... .+|.+ ...++|-|.+++.+ ..+++|+.-++.||.++|+...|
T Consensus 7 FE~ark~aea~y~----~nP~D-----------adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA 71 (186)
T PF06552_consen 7 FEHARKKAEAAYA----KNPLD-----------ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA 71 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHHH----hCcHh-----------HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 6678888888777 57776 45666666666555 34778899999999999999999
Q ss_pred HHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 272 LYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 272 ~~r~g~a~~~l~~-----------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
++.+|+||..++. |++|..+|++|...+|+| ...+..|....+.-.
T Consensus 72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~~kap~ 128 (186)
T PF06552_consen 72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN-ELYRKSLEMAAKAPE 128 (186)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHhhHH
Confidence 9999999998755 789999999999999998 677777777754433
No 97
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=98.53 E-value=9.4e-08 Score=75.30 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=38.3
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCC--CCCCCCCCeeeEEEEee
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPL--MPVVEGCEEVHFEVELV 43 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~--~~~ip~~~~l~~~vel~ 43 (414)
||.+|++||++.|.|||++|||..+ ++.||++++|+|+|+|+
T Consensus 51 al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 51 ALIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp HHTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred hcccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence 6889999999999999999999854 45699999999999996
No 98
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=2.3e-06 Score=64.98 Aligned_cols=82 Identities=27% Similarity=0.435 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
+++++|.+++..+++.+|+..+.++++..|.+..+++.+|.++...+++++|+..|++++.+.|.+ ..+...+..+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999999987 4555555555544
Q ss_pred HHH
Q 015006 317 RQE 319 (414)
Q Consensus 317 ~~~ 319 (414)
...
T Consensus 81 ~~~ 83 (100)
T cd00189 81 LGK 83 (100)
T ss_pred HHh
Confidence 443
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.52 E-value=2.1e-06 Score=79.28 Aligned_cols=122 Identities=15% Similarity=0.172 Sum_probs=96.5
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--------CCHHHHHHHH
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--------GECRKSIEAC 258 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--------~~~~~A~~~~ 258 (414)
..+...|..+++.|+|..|+..|.++++ ..|.+.. ...+++++|.|++++ +++..|+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~----~~p~~~~--------~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~ 138 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIR----LHPNHPD--------ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF 138 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----HCcCCCc--------hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 3456789999999999999999999999 5555421 123678899999887 8899999999
Q ss_pred HHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHH
Q 015006 259 NKVLDANPAHVKGL-----------------YRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQE 319 (414)
Q Consensus 259 ~~al~~dp~~~ka~-----------------~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~ 319 (414)
.+++..+|++..++ +.+|..++..|++.+|+..|+++++..|++. ..+...+..+...+..
T Consensus 139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 99999999986442 4678899999999999999999999988752 3455566666555444
Q ss_pred H
Q 015006 320 V 320 (414)
Q Consensus 320 ~ 320 (414)
.
T Consensus 219 ~ 219 (235)
T TIGR03302 219 K 219 (235)
T ss_pred H
Confidence 3
No 100
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.51 E-value=2.7e-06 Score=84.50 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=100.0
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+...|..+++.|++.+|+..|.+++. ..|.. ..+++++|.++.+.|++++|+..+.+++..+|
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALA----ADPQC-----------VRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh----HCcCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 3455678888899999999999999998 45544 45788899999999999999999999999998
Q ss_pred Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015006 267 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKK 335 (414)
Q Consensus 267 ~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (414)
.+ ..++..++.+|..+|++++|+..+++++++.|++ ..+ ..+..+....... +.....+..++...
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-~~~-~~la~~~~~~g~~-~~A~~~l~~~l~~~ 312 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-DLL-LALAQLLEEQEGP-EAAQALLREQLRRH 312 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHH-HHHHHHHHHhCCH-HHHHHHHHHHHHhC
Confidence 76 4678899999999999999999999999999986 333 3444443332222 22344455455443
No 101
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.50 E-value=9.4e-07 Score=89.60 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=113.1
Q ss_pred hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
....+..++..|+.+...++|.+|+..|.+|+.++..+...+ ++..+.++.|||.+|.+.|+|++|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 344566677899999999999999999999999887665555 5566889999999999999999999999999
Q ss_pred HHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q 015006 262 LDAN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD-----KSS--EPDATAALSKLKKQRQEVESKARK 326 (414)
Q Consensus 262 l~~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~-----P~n--~~~~~~~l~~~~~~~~~~~~~~~~ 326 (414)
+++- |.-...+...+.++..++++++|+..|++++++- +.| .+.++.+|..+.....+.++. ..
T Consensus 310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea-~~ 388 (508)
T KOG1840|consen 310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEA-EE 388 (508)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHH-HH
Confidence 9774 3346788899999999999999999999999872 222 245667777776665544433 33
Q ss_pred HHHhhccC
Q 015006 327 QFKGLFDK 334 (414)
Q Consensus 327 ~~~~~~~~ 334 (414)
++++...+
T Consensus 389 ~~k~ai~~ 396 (508)
T KOG1840|consen 389 LYKKAIQI 396 (508)
T ss_pred HHHHHHHH
Confidence 44444433
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.50 E-value=1.4e-06 Score=85.83 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
+...|..++..++|..|+..+.+||+++|+++.+|+.+|.+|..+|++++|+.+|++|+.++|++ ..+...+..+...+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHh
Confidence 45578889999999999999999999999999999999999999999999999999999999998 66777777665554
Q ss_pred HHH
Q 015006 318 QEV 320 (414)
Q Consensus 318 ~~~ 320 (414)
.+.
T Consensus 84 g~~ 86 (356)
T PLN03088 84 EEY 86 (356)
T ss_pred CCH
Confidence 433
No 103
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.49 E-value=3e-06 Score=74.19 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=88.5
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH--- 268 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~--- 268 (414)
..+.+|-.+.|..+...+...++ .... .....+++++|.++..+++|++|+..+.+++.+.|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~---------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 71 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILP----TTSG---------EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR 71 (168)
T ss_pred cccccccccccccchhhhhHhcc----CCch---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence 45677777778888777755544 2222 2246789999999999999999999999999987653
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
+-+++++|.++..+|++++|+..|++|+.++|.+ ......+..+..
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~ 117 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHH
Confidence 4589999999999999999999999999999987 556666665554
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.49 E-value=1.8e-06 Score=73.68 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
...+-+|.-++..|++++|...+..++.+||.++..||.+|.++..+|+|.+|+..|.+|+.++|++ +....++..|.-
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHHH
Confidence 4556688889999999999999999999999999999999999999999999999999999999998 678888888876
Q ss_pred HHHHHHHHHHHHHHhhccC
Q 015006 316 QRQEVESKARKQFKGLFDK 334 (414)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ 334 (414)
.+.+... .++.|+..+..
T Consensus 115 ~lG~~~~-A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCY-AIKALKAVVRI 132 (157)
T ss_pred HcCCHHH-HHHHHHHHHHH
Confidence 6654433 34445444443
No 105
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.48 E-value=9.1e-07 Score=90.84 Aligned_cols=102 Identities=24% Similarity=0.333 Sum_probs=95.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH--HHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE--ACNKVLD 263 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~--~~~~al~ 263 (414)
+..+...|..+..+|++.+|...|..|+. ++|.+ ..+..-+|.|+++.|+..-|.. ....+++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~----ldP~h-----------v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALA----LDPDH-----------VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHh----cCCCC-----------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 55678889999999999999999999999 88888 6788889999999999888887 9999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+||.|.+|||.+|.++..+|+.++|.++|..|+++++++
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999887
No 106
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=2.1e-06 Score=93.04 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+...|..+...|++.+|+..+.+++. ..|.+ ..+++++|.++...|++++|+..+++++.++|+
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~----~~P~n-----------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY----NAPGN-----------QGLRIDYASVLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Confidence 344567777889999999999999999 67877 569999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+..+++.+|.+++.+++|++|...++++++.+|++
T Consensus 426 ~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 426 NINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999998
No 107
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=3e-07 Score=81.36 Aligned_cols=133 Identities=21% Similarity=0.232 Sum_probs=111.3
Q ss_pred CCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhh
Q 015006 153 VPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVG 232 (414)
Q Consensus 153 ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~ 232 (414)
+|-..++.-+|.+..+...-....++.+++ |.-+.++|+.+=..|-+..|..-|+++|. +.|.-
T Consensus 35 ~~~qp~lqqEV~iarlsqlL~~~~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLa----i~P~m--------- 98 (297)
T COG4785 35 VPLQPTLQQEVILARMSQILASRALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALA----IRPDM--------- 98 (297)
T ss_pred ccCCccHHHHHHHHHHHHHHHhccCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhh----cCCCc---------
Confidence 444444555555544433323345565554 88899999999999999999999999999 67765
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
..+++-+|.-+...++|+.|.+.++.++++||.+--|+.+||.+++.-|+|.-|.++|.+-..-||+++
T Consensus 99 --~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 99 --PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred --HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 668888999999999999999999999999999999999999999999999999999999999999873
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.43 E-value=5.5e-07 Score=66.07 Aligned_cols=67 Identities=27% Similarity=0.397 Sum_probs=58.4
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~ 275 (414)
+++.|+|.+|+..|++++. ..|.+ ..+++++|.||++.|++++|...+.+++..+|+++..+.-+
T Consensus 1 ll~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ----RNPDN-----------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH----HTTTS-----------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHH----HCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3578999999999999999 67777 66888999999999999999999999999999987777666
Q ss_pred HH
Q 015006 276 GM 277 (414)
Q Consensus 276 g~ 277 (414)
++
T Consensus 66 a~ 67 (68)
T PF14559_consen 66 AQ 67 (68)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=4.6e-06 Score=67.75 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE--PDATAAL 310 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~--~~~~~~l 310 (414)
..++++|.++++.++|.+|+..|.+++...|++ ..+++.+|.++...|++++|+..|++++..+|++. ..+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467889999999999999999999999999877 67999999999999999999999999999999862 3445555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC
Q 015006 311 SKLKKQRQEVESKARKQFKGLFDKKP 336 (414)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
..+....... ......+...+...+
T Consensus 83 ~~~~~~~~~~-~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDK-EKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCCh-HHHHHHHHHHHHHCc
Confidence 5554433322 223345555554443
No 110
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.39 E-value=2.4e-06 Score=72.93 Aligned_cols=95 Identities=21% Similarity=0.370 Sum_probs=54.1
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
....|..++..|+|++|+..|..++. ..++. .+...+.+++|.+++.+++|++|+..+..+ .-.+-.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~----~~~d~--------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~ 117 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALA----NAPDP--------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFK 117 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh----hCCCH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchH
Confidence 34455666666666666666666665 22111 123345566666666666666666666442 222334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
+.++..+|.++...|++++|+..|++||
T Consensus 118 ~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 118 ALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4556666666666666666666666653
No 111
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.38 E-value=8e-07 Score=67.19 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=60.7
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+...|..++..|+|.+|+..|++|+.+.....+ + ....+.++.|+|.|+..+|++++|+.++++|+++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD-D-------HPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT-H-------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC-C-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778899999999999999999999999997443322 2 2334789999999999999999999999999876
No 112
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.37 E-value=4.4e-06 Score=87.90 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=100.7
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+.-.+|.+|-.|+|..+...+..|+..- . ...+.+..++++|.||..+|+|++|..+|.+++..+|
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-----~-------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~ 338 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNT-----E-------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN 338 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhh-----h-------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence 345667888899999999999999888731 1 1234466799999999999999999999999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 267 AH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 267 ~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
++ +-+++.+|+.++..|+++.|+.+|+++++..|+| .+....|.-+....
T Consensus 339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETMKILGCLYAHS 389 (1018)
T ss_pred CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHHHHHHhHHHhh
Confidence 98 9999999999999999999999999999999998 56777777665544
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.36 E-value=5.1e-06 Score=73.08 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006 234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 310 (414)
Q Consensus 234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l 310 (414)
...+++++|.++...|+|++|+.+|.+++.+.|+. +.+++.+|.++..+|++++|+..|.+|+.++|.+ ......+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHH
Confidence 46689999999999999999999999999987653 5799999999999999999999999999999987 5555555
Q ss_pred HHHHH
Q 015006 311 SKLKK 315 (414)
Q Consensus 311 ~~~~~ 315 (414)
..+..
T Consensus 113 g~~~~ 117 (172)
T PRK02603 113 AVIYH 117 (172)
T ss_pred HHHHH
Confidence 55543
No 114
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=6.8e-06 Score=76.73 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=91.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL 262 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al 262 (414)
++.+--.|..++..|++..|...|.+|++ +.|++ ..++.-+|.+++... .-.++...++++|
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n-----------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALR----LAGDN-----------PEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 56688899999999999999999999999 78888 446666676666553 4678899999999
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
.+||.|+.+++-+|..++..|+|.+|+..+++.|.+.|.+.
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999874
No 115
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.2e-06 Score=82.05 Aligned_cols=112 Identities=17% Similarity=0.183 Sum_probs=93.7
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-+.||..|..|+|++|...|+.||. -+. .-..+++|++..+-++|+.++|+.++-+.-.+-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~----nda-----------sc~ealfniglt~e~~~~ldeald~f~klh~il 554 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALN----NDA-----------SCTEALFNIGLTAEALGNLDEALDCFLKLHAIL 554 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHc----Cch-----------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999998 111 114578999999999999999999998876666
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
-+|+..++.+|.+|..+.+-.+|++.|.+|..+-|++ +.+...|..+
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~d-p~ilskl~dl 601 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND-PAILSKLADL 601 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC-HHHHHHHHHH
Confidence 6899999999999999999999999999999999987 5555555543
No 116
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.34 E-value=6.4e-06 Score=76.00 Aligned_cols=106 Identities=17% Similarity=0.302 Sum_probs=91.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
++.+.+.+-.+++.|+|..|...|..-+.-+ |.+ .....+++=|+.|++.+|+|.+|...|..+.+-.
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y----P~s--------~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKY----PNS--------TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC--------cccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 4447788899999999999999999999844 333 1224577779999999999999999999999998
Q ss_pred CCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 266 PAHV---KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 266 p~~~---ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
|+++ .++|.+|.+...+|+-++|...|+++++--|...
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 8764 5699999999999999999999999999999973
No 117
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.32 E-value=2.5e-06 Score=63.44 Aligned_cols=69 Identities=26% Similarity=0.467 Sum_probs=61.9
Q ss_pred ccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 015006 194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY 273 (414)
Q Consensus 194 n~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~ 273 (414)
+.+++.++|..|+..+.+++. +.|.+ ..++.++|.|+.++|+|.+|+.+++++++..|+++.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~----~~p~~-----------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE----LDPDD-----------PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH----hCccc-----------chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 467889999999999999999 67776 779999999999999999999999999999999988876
Q ss_pred HHHH
Q 015006 274 RRGM 277 (414)
Q Consensus 274 r~g~ 277 (414)
-++.
T Consensus 68 ~~a~ 71 (73)
T PF13371_consen 68 LRAM 71 (73)
T ss_pred HHHh
Confidence 5553
No 118
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.32 E-value=3.4e-06 Score=84.77 Aligned_cols=86 Identities=14% Similarity=0.258 Sum_probs=71.2
Q ss_pred CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 153 (414)
Q Consensus 74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i 153 (414)
+..||.|+|+|+|+. +|..| +++ ...++.|.+|.+.+++||+.+|.+|++|+...|.++....|+....
T Consensus 147 ~~~gD~V~v~~~~~~---dg~~~-~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---- 215 (408)
T TIGR00115 147 AEKGDRVTIDFEGFI---DGEAF-EGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---- 215 (408)
T ss_pred cCCCCEEEEEEEEEE---CCEEC-cCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC----
Confidence 367999999999975 37777 433 3568999999999999999999999999999999986556665443
Q ss_pred CCCcceEEEEEEcccCCC
Q 015006 154 PEGAHIQWEIELLGFEKP 171 (414)
Q Consensus 154 p~~~~l~~eieL~~~~~~ 171 (414)
.|.++.|.|++.++...
T Consensus 216 -~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKEK 232 (408)
T ss_pred -CCCeEEEEEEEEEeccC
Confidence 57889999999998764
No 119
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.32 E-value=6.1e-07 Score=83.99 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=42.5
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI 46 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~ 46 (414)
||..|++|+++.|.|||+++||..+.++||||++|+|+|+|+++.
T Consensus 205 aL~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~ 249 (269)
T PRK10902 205 GLKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVK 249 (269)
T ss_pred HHhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEec
Confidence 689999999999999999999998888999999999999999875
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.32 E-value=1.5e-05 Score=83.34 Aligned_cols=125 Identities=19% Similarity=0.308 Sum_probs=95.6
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHh-------hhhh----------------HHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFV-------GKRN----------------LLHLNV 241 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~-------~~~~----------------~~~~N~ 241 (414)
.+..+..++|.+|.+|++.+|.+.+..+|+ .+|.+......+- ++.. ..|.-+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 377888999999999999999999999999 5666543221110 0111 234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
|.-..+++++.+|+-+|.+||..+|.+.+-+++++..|.++|++..|...|.+++.++|. .+....+..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~--~d~er~~d~i~~ 285 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP--VDIERIEDLIRR 285 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc--hhHHHHHHHHHH
Confidence 555667888999999999999999999999999999999999999999999999999994 344444444443
No 121
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=1.5e-05 Score=65.60 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=82.2
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA- 267 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~- 267 (414)
..+.|..+-..|+..+|+..|.+|+. ..... ..+..++.++|.++..+|++++|+..+++++.-.|+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~----~gL~~--------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~ 71 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALA----AGLSG--------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD 71 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCc--------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 45667777888999999999999998 32222 123568889999999999999999999999998887
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 268 --HVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 268 --~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+.....-.+.++..+|+.++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777778889999999999999999988775
No 122
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.26 E-value=1.6e-05 Score=63.69 Aligned_cols=106 Identities=20% Similarity=0.365 Sum_probs=82.1
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA----- 264 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~----- 264 (414)
...|...+..|-|.+|...|++|+..-..+.+....+..-| -.-||.-++.++.++|+|++++..+.++|.+
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GF---DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGF---DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 35666777889999999999999998776665543333332 2568889999999999999999999999954
Q ss_pred --CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 265 --NP----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 265 --dp----~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+. .++.+.|++|.++..+|+.++|+..|+++-++
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 22 36889999999999999999999999998765
No 123
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=4.2e-06 Score=78.38 Aligned_cols=82 Identities=20% Similarity=0.328 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp---~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
..+++|+|.|.+-.++|+-++..+.+|+..-- .-+..||++|.+....|++..|..+|+-||..||+| .++..+|.
T Consensus 358 peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLa 436 (478)
T KOG1129|consen 358 PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLA 436 (478)
T ss_pred hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHH
Confidence 45899999999999999999999999987642 357889999999999999999999999999999998 77888888
Q ss_pred HHHHHH
Q 015006 312 KLKKQR 317 (414)
Q Consensus 312 ~~~~~~ 317 (414)
.++.+.
T Consensus 437 vL~~r~ 442 (478)
T KOG1129|consen 437 VLAARS 442 (478)
T ss_pred HHHhhc
Confidence 886543
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.22 E-value=2e-05 Score=85.13 Aligned_cols=149 Identities=10% Similarity=0.008 Sum_probs=108.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH-----------------HHHHh------hhhhHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFV------GKRNLLHLNVA 242 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e-----------------~~~~~------~~~~~~~~N~a 242 (414)
+......+...++.|+|..|+..|.++++ ..|.+... ...+. ......+..+|
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~----~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA 109 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESK----AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAA 109 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHh----hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 44566778888999999999999999998 45554211 00011 11123444557
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVES 322 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~ 322 (414)
.++..+|+|.+|+..++++++.+|+++.+++-++.++..+++.++|+..+++++..+|.+ ... ..+..+..... ...
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~-~~~-l~layL~~~~~-~~~ 186 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV-QNY-MTLSYLNRATD-RNY 186 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch-HHH-HHHHHHHHhcc-hHH
Confidence 789999999999999999999999999999999999999999999999999999999986 333 33444433322 222
Q ss_pred HHHHHHHhhccCCCCCccc
Q 015006 323 KARKQFKGLFDKKPGEISE 341 (414)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~ 341 (414)
+.-..+++++...+...+-
T Consensus 187 ~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHHHHHHHHhCCCCHHH
Confidence 3677888888887665533
No 125
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.22 E-value=2.2e-06 Score=53.74 Aligned_cols=33 Identities=30% Similarity=0.632 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
+++|+++|.++..+|++++|+.+|++||+++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 356777777777777777777777777777775
No 126
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=4e-06 Score=81.40 Aligned_cols=98 Identities=18% Similarity=0.333 Sum_probs=87.8
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
.+.||.+|++.+|.+|++.|+.||...+.+. ..+++.++.|++..+.++|+|+.|+..+..+++..| |.
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~ 309 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF 309 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence 3789999999999999999999999543332 457789999999999999999999999999999998 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
++-+++-.|++..|+-+.-.+.|++.+.+
T Consensus 310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 310 IAALNLIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence 77789999999999999999999999876
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=2.9e-05 Score=70.88 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
++.-.+..++..|+|..|+..+.++..++|+++++|.-+|-+|.++|++++|...|.+|+++.|++ +.+..++.-..-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~-p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE-PSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-chhhhhHHHHHH
Confidence 444488999999999999999999999999999999999999999999999999999999999987 566666665543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=3.8e-05 Score=75.69 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
..+..-++..+++.++.++|++.+.+++.++|+..-..+.+|++|++.|++.+|+..++..+.-+|++ +.....|.+..
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-p~~w~~LAqay 418 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED-PNGWDLLAQAY 418 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-chHHHHHHHHH
Confidence 44556678889999999999999999999999999999999999999999999999999999999998 78888888887
Q ss_pred HHHHHHHHHH
Q 015006 315 KQRQEVESKA 324 (414)
Q Consensus 315 ~~~~~~~~~~ 324 (414)
..+....+..
T Consensus 419 ~~~g~~~~a~ 428 (484)
T COG4783 419 AELGNRAEAL 428 (484)
T ss_pred HHhCchHHHH
Confidence 6665444433
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=2.8e-05 Score=76.69 Aligned_cols=109 Identities=28% Similarity=0.318 Sum_probs=89.2
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka 271 (414)
.|..+++.+++.+|++.+++++. +.|.. ..+..|+|.++++.|++.+|+...+..+.-+|+++..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~----l~P~~-----------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~ 410 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA----LDPNS-----------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNG 410 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh----cCCCc-----------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchH
Confidence 34455667777777777777777 55554 5688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 272 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 272 ~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
|..+|++|..+|+-.+|...+-.++.+...- ..+...+...+++
T Consensus 411 w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~-~~A~~~l~~A~~~ 454 (484)
T COG4783 411 WDLLAQAYAELGNRAEALLARAEGYALAGRL-EQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHh
Confidence 9999999999999999999998888887764 4455555555443
No 130
>PRK01490 tig trigger factor; Provisional
Probab=98.15 E-value=1.2e-05 Score=81.60 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=69.3
Q ss_pred CCCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCC
Q 015006 74 PLHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANV 153 (414)
Q Consensus 74 p~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~i 153 (414)
+..||.|+|+|.|.. +|..|. +. ...++.|.+|.+.+++||+.+|.+|++|+...|.++.-..|+....
T Consensus 158 ~~~gD~V~vd~~~~~---~g~~~~-~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---- 226 (435)
T PRK01490 158 AENGDRVTIDFVGSI---DGEEFE-GG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---- 226 (435)
T ss_pred CCCCCEEEEEEEEEE---CCEECc-CC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC----
Confidence 468999999999996 377773 33 3568999999999999999999999999999988865444544332
Q ss_pred CCCcceEEEEEEcccCCC
Q 015006 154 PEGAHIQWEIELLGFEKP 171 (414)
Q Consensus 154 p~~~~l~~eieL~~~~~~ 171 (414)
.|.+..|.|+|.++...
T Consensus 227 -agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 227 -AGKEATFKVTVKEVKEK 243 (435)
T ss_pred -CCCeEEEEEEEEEeccC
Confidence 56789999999998764
No 131
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.13 E-value=1.7e-05 Score=80.64 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=94.3
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
..|..+.+.|..+++.|+|.+|..+|.+|+++.......+ .......++|+++.+..+++|++|+..+.++++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 3588899999999999999999999999999877633333 334567899999999999999999999999987
Q ss_pred hC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 264 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 264 ~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
+- +.-++-+-++|.+|..+|+|++|.+.|++|+.+.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 63 2447889999999999999999999999999874
No 132
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.11 E-value=1.2e-05 Score=84.00 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=88.7
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+.-+.+.+..+...|+|.+|+..|..++. ..+.. ..-+|.++|.||..++.|++|+..+.+||.+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~----~~~~~----------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITN----REGYQ----------NAFVWYKLARCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhc----Ccccc----------chhhhHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 355677888888899999999999999887 33322 1568999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
+|++..+...++..+..+|+.++|++.+.....-||
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 999999999999999999999999999988764443
No 133
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.09 E-value=3.7e-05 Score=83.08 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 279 (414)
Q Consensus 200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~ 279 (414)
|+|..|+..|++++. ..|.+ ..++.-++.++..++++.+|+..+.+++..+|.+... .-++.++
T Consensus 116 gdyd~Aiely~kaL~----~dP~n-----------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 116 KRWDQALALWQSSLK----KDPTN-----------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred CCHHHHHHHHHHHHh----hCCCC-----------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 789999999999999 78887 4466678999999999999999999999999985444 3345555
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 280 MALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 280 ~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
..++++.+|++.|+++++++|++ .++...+..+....
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n-~e~~~~~~~~l~~~ 216 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTS-EEVLKNHLEILQRN 216 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Confidence 55777777999999999999998 45554554444433
No 134
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.08 E-value=3e-05 Score=81.78 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=108.2
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
.+-+++.|-.+|..|++..|...|.+|+..+......+ +. .....++.+|+|.|+=.++++..|...|..++...
T Consensus 452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d--e~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh 526 (1018)
T KOG2002|consen 452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD--EG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH 526 (1018)
T ss_pred HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc--cc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 55688999999999999999999999999643221111 11 23447789999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV 320 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~ 320 (414)
|..+.++.|+|......++..+|...++.++.++..| +.++..+..+..+..+.
T Consensus 527 p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n-p~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 527 PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN-PNARSLLGNLHLKKSEW 580 (1018)
T ss_pred chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC-cHHHHHHHHHHHhhhhh
Confidence 9999999999977777789999999999999999998 78999999776555443
No 135
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.08 E-value=3.4e-05 Score=75.67 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=90.0
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH--------------------HHH------hhhhhHHHHH
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG--------------------KVF------VGKRNLLHLN 240 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~--------------------~~~------~~~~~~~~~N 240 (414)
+....+|..++..|++..|...+.+++. ..|.+..-. +.+ ......++.+
T Consensus 44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~----~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 44 ERAHVEALSAWIAGDLPKALALLEQLLD----DYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 3344678888999999999999999988 344433110 001 0111235678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+|.++..+|++.+|+..+.++++++|+++.++..+|.++...|++++|+..|++++...|.+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~ 181 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS 181 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC
Confidence 89999999999999999999999999999999999999999999999999999999998753
No 136
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=8.7e-06 Score=50.78 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+++++.+|.+++.+|+|++|+..|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678888888888888888888888888888875
No 137
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=4.2e-05 Score=75.60 Aligned_cols=69 Identities=29% Similarity=0.374 Sum_probs=61.2
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+.+.|+.+++.|+|++|+..|++||. ++|.+.+ ...+|+|+|.||.++|++++|+.++.+||++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe----L~Pd~ae--------A~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE----LNPNPDE--------AQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCchH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478888999999999999999999999999 7887722 0146999999999999999999999999998
Q ss_pred C
Q 015006 265 N 265 (414)
Q Consensus 265 d 265 (414)
.
T Consensus 142 s 142 (453)
T PLN03098 142 Y 142 (453)
T ss_pred c
Confidence 3
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.07 E-value=4.6e-05 Score=71.59 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=78.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHH
Q 015006 236 LLHLNVAACL-LKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAA 309 (414)
Q Consensus 236 ~~~~N~a~~~-~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~--~~~~~ 309 (414)
...++.|.++ ++.++|++|+..|...+...|++ +.|+|++|.+|+..|+|++|+..|+++++..|++.. ++...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 5677888887 67899999999999999999988 589999999999999999999999999999998732 33333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q 015006 310 LSKLKKQRQEVESKARKQFKGLFDKKPGE 338 (414)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (414)
+..+...+ ....+.+..|..+....++.
T Consensus 223 lg~~~~~~-g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDK-GDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCcCC
Confidence 34443332 23444566666666655543
No 139
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.03 E-value=1.5e-05 Score=82.71 Aligned_cols=115 Identities=30% Similarity=0.519 Sum_probs=102.2
Q ss_pred CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--CCHHHH
Q 015006 177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GECRKS 254 (414)
Q Consensus 177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--~~~~~A 254 (414)
.+....+..+..++.+||.+|.+++|..|...|..++.++ |.+ +...+.++.|++.|++.+ ++|..+
T Consensus 44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~ll----p~~-------~~~~a~~~~~~~s~~m~~~l~~~~~~ 112 (748)
T KOG4151|consen 44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLL----PKD-------HHVVATLRSNQASCYMQLGLGEYPKA 112 (748)
T ss_pred cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheec----ccc-------chhhhhHHHHHHHHHhhcCccchhhh
Confidence 3556677889999999999999999999999999999954 433 233478999999998865 689999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 255 IEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 255 ~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+..|.-|+...|...+++++|+.+|..++.++-|++++.-...++|.+
T Consensus 113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~ 160 (748)
T KOG4151|consen 113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN 160 (748)
T ss_pred cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999999998
No 140
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.03 E-value=6.3e-06 Score=51.71 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=31.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015006 258 CNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 290 (414)
Q Consensus 258 ~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~ 290 (414)
|++||+++|+|+.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999973
No 141
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.03 E-value=0.0003 Score=59.88 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=83.2
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCC-----C--CChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN-----P--QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~-----p--~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
+...|......++...++..|.+++..+..-. . .-......++.....+...++.++...|++..|+..|.++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445555667788999999999998664321 1 1112334566677788889999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 262 LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 262 l~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+.++|-+..++..+-.+|..+|+..+|+..|.++..
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988754
No 142
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=98.02 E-value=3.9e-05 Score=74.14 Aligned_cols=113 Identities=12% Similarity=0.262 Sum_probs=90.4
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccC----CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~----~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
+.......|...|++++|..|+-.|..||++|... .|...+. .....+..-+...+..||+++++.+.|+.+..+
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~-~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASA-EDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCCh-hhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 45555567889999999999999999999987542 2222211 112233345677899999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 261 VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 261 al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.|.++|.+..-++|+|.++..+.+|.+|-..+.-|.-+
T Consensus 254 sI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 254 SINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887766543
No 143
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=3.3e-05 Score=79.26 Aligned_cols=113 Identities=15% Similarity=0.201 Sum_probs=95.2
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
...|+-.+..++|.+|.++++.+++ ++|-. ...|++++.|.++++++..|..+|..++.++|++.
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~----~nplq-----------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ 553 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLE----INPLQ-----------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA 553 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhh----cCccc-----------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch
Confidence 4455666778999999999999998 55443 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
.+|-+++.+|+.+++-.+|...++.|++-+-.| -.+..+...+.-...
T Consensus 554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvg 601 (777)
T KOG1128|consen 554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVG 601 (777)
T ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-Ceeeechhhhhhhcc
Confidence 999999999999999999999999999998665 345555555544433
No 144
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.00 E-value=5.1e-05 Score=74.41 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=86.1
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+...|..+...|++.+|...|++++. ..|.+ ..++.++|.+++..|++++|+..+.+++...|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~----~~p~~-----------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALE----LNPDD-----------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCC-----------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3444667788899999999999999999 67776 56889999999999999999999999999887
Q ss_pred Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 267 AH----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 267 ~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
.+ ...++.+|.++..+|++++|+..|++++...|
T Consensus 180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 43 24567899999999999999999999988777
No 145
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.3e-05 Score=50.08 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
.+|+|+|.||+.+++|++|+.+|++||+++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 479999999999999999999999999999975
No 146
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00011 Score=75.59 Aligned_cols=113 Identities=15% Similarity=0.143 Sum_probs=86.6
Q ss_pred HHHHHhhhccccccc---cHHHHHHHHHHHHhhcccCCCCChH---------------------HHHH-H----------
Q 015006 186 AEKIRVTGNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDE---------------------EGKV-F---------- 230 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~p~~~~---------------------e~~~-~---------- 230 (414)
|-.+.-+|..++..+ .+..|+.+|++|+. ++|.+.. .... .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~----ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILK----SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 344556676666544 48899999999998 4554311 1000 0
Q ss_pred -hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 231 -VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 231 -~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
......+|.-+|..+...|++++|...+++|+.++| ++.+|..+|.++...|++++|++.|++|+.++|.++
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 011124566778888889999999999999999999 588999999999999999999999999999999863
No 147
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=0.00013 Score=68.45 Aligned_cols=141 Identities=14% Similarity=0.206 Sum_probs=105.1
Q ss_pred CCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhh----------cccC-CCCChHHHH-------------HHh
Q 015006 176 GLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD----------FNHV-NPQDDEEGK-------------VFV 231 (414)
Q Consensus 176 ~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~----------~~~~-~p~~~~e~~-------------~~~ 231 (414)
+++++++ ...+.+.|..|+..|-|+.|...|...+.. +-.+ .-..+++.. ...
T Consensus 100 dlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 100 DLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred CCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 3455544 556778888888888888888888765541 0000 000011110 011
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
-..+..|+-+|..++-..+.+.|+....+|+..||.++.|-.-+|.+++..|+|..|++.++.+++.||+--..+...|.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 22356899999999999999999999999999999999999999999999999999999999999999987677777777
Q ss_pred HHHHHHHH
Q 015006 312 KLKKQRQE 319 (414)
Q Consensus 312 ~~~~~~~~ 319 (414)
.+...+.+
T Consensus 257 ~~Y~~lg~ 264 (389)
T COG2956 257 ECYAQLGK 264 (389)
T ss_pred HHHHHhCC
Confidence 77665543
No 148
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.98 E-value=3.6e-05 Score=73.10 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=86.1
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
......++..+++..+...+.++..... .+.+ ..++.-+|.++.+.|++++|+..+.+||+++|++.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-----------~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPA--APDS-----------ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T-----T------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccC--CCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3344456677889999988888775110 1222 56788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
.++..++.++..+|++++|.+.+....+..|++ +.+...+..+...+.+..
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~-~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDD-PDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS-CCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH-HHHHHHHHHHhccccccc
Confidence 999999999999999999998888888887776 456666776666555433
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=2.4e-05 Score=60.05 Aligned_cols=74 Identities=26% Similarity=0.412 Sum_probs=60.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015006 248 LGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 323 (414)
Q Consensus 248 l~~~~~A~~~~~~al~~dp~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~ 323 (414)
.++|+.|+..++++++.+|. +...++.+|.||+.+|+|++|+..+++ ++.+|.+ ..+...+.++.-.+.+..+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHH
Confidence 58899999999999999995 577888999999999999999999999 8888876 56777777776666555544
No 150
>PRK11906 transcriptional regulator; Provisional
Probab=97.94 E-value=0.00016 Score=71.65 Aligned_cols=77 Identities=17% Similarity=0.042 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 015006 235 NLLHLNVAACLLKL---------GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPD 305 (414)
Q Consensus 235 ~~~~~N~a~~~~kl---------~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~ 305 (414)
+.+|.-+|.||+.. ..-.+|+..+.+|+++||.++.|++.+|.++...++++.|...|++|+.++|+. +.
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~-A~ 373 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDI-AS 373 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCcc-HH
Confidence 67888888888765 235678889999999999999999999999999999999999999999999997 56
Q ss_pred HHHHHHH
Q 015006 306 ATAALSK 312 (414)
Q Consensus 306 ~~~~l~~ 312 (414)
+......
T Consensus 374 ~~~~~~~ 380 (458)
T PRK11906 374 LYYYRAL 380 (458)
T ss_pred HHHHHHH
Confidence 6655554
No 151
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=7.9e-05 Score=74.75 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
..++.-||..|+-.++|++|+.+|+.||..+|++..-|-|+|-++..-.+.++|+..|.+||+|.|.. ..++.+|....
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~ 508 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISC 508 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999997 56888888876
Q ss_pred HHHHHHHHHHHH
Q 015006 315 KQRQEVESKARK 326 (414)
Q Consensus 315 ~~~~~~~~~~~~ 326 (414)
--+..+++..+-
T Consensus 509 mNlG~ykEA~~h 520 (579)
T KOG1125|consen 509 MNLGAYKEAVKH 520 (579)
T ss_pred hhhhhHHHHHHH
Confidence 666666655443
No 152
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.88 E-value=0.0006 Score=68.56 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=64.8
Q ss_pred hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh----------------HHH-HHHhh------h-hh
Q 015006 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD----------------EEG-KVFVG------K-RN 235 (414)
Q Consensus 180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~----------------~e~-~~~~~------~-~~ 235 (414)
..+.+++...-.+|-..+..|+|..|.+...++.+ ..|... +.. ..+.. . ..
T Consensus 78 ~r~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l 153 (409)
T TIGR00540 78 GRKRRKAQKQTEEALLKLAEGDYAKAEKLIAKNAD----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI 153 (409)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch
Confidence 33555788888899999999999999999988887 333320 000 00000 0 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.+...++..++..++++.|+..++..++..|+++.+++..+.++...|++++|++.+.+.++.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 122223444555555555555555555555555555555555555555555555555555544
No 153
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=9.6e-05 Score=70.43 Aligned_cols=109 Identities=18% Similarity=0.232 Sum_probs=86.4
Q ss_pred HHHHHHhhhcccccc-ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~-g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
.|..+...|..+... |+++.|+..|.+|+.++.... . ......++.++|.++.++++|.+|+..+.++..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~-------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--S-------PHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--C-------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 477888999999998 999999999999999765332 1 123357899999999999999999999999987
Q ss_pred hCCC------cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 264 ANPA------HVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 264 ~dp~------~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
..-+ +++ .+++.+.|++.+|++..|...|++....+|..
T Consensus 184 ~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 184 KCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp TCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5321 344 45788999999999999999999999999854
No 154
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.00021 Score=77.08 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=74.2
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+-...+.+...+++.+|+..+..++. ..|.. ..+|+-+|..++..+++..|... .++.+-+.
T Consensus 33 a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~-----------i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 33 ELDDLIDAYKSENLTDEAKDICEEHLK----EHKKS-----------ISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcc-----------eehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 344445556677899999999998888 45544 45566666666666665555444 44444443
Q ss_pred cH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 268 HV-------------------KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 268 ~~-------------------ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+. .|++.+|.||-++|++++|.+.|+++|+++|+| ..+...++-..
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n-~~aLNn~AY~~ 160 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN-PEIVKKLATSY 160 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc-HHHHHHHHHHH
Confidence 33 788888888888888888888888888888887 55555555443
No 155
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.85 E-value=0.00067 Score=67.98 Aligned_cols=121 Identities=11% Similarity=0.062 Sum_probs=84.3
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
.+.+++......|-..+-.|+|..|.+...++-.. .+.+ ...|...|.+..+.|+++.|..++.+
T Consensus 79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~-----~~~p----------~l~~llaA~aA~~~g~~~~A~~~l~~ 143 (398)
T PRK10747 79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH-----AEQP----------VVNYLLAAEAAQQRGDEARANQHLER 143 (398)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----ccch----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35557888888899999999999999777765552 1110 22234445555788888888888888
Q ss_pred HHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 261 VLDANPAHVK-GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 261 al~~dp~~~k-a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
+.+.+|++.- ...+.+..+...|++++|+..++++++.+|+| ..+...+..+....
T Consensus 144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~-~~al~ll~~~~~~~ 200 (398)
T PRK10747 144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRH-PEVLRLAEQAYIRT 200 (398)
T ss_pred HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHH
Confidence 8888887743 33455888888888888888888888888887 45555555554333
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.0011 Score=56.50 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=79.7
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
...+..........+..+++..+...+.+.+. ..|.. .....+.+.+|.+++..|+|++|+..+..++
T Consensus 8 ~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~s--------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 8 AEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPSS--------PYAALAALQLAKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCCC--------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566666666666778888888887887777 33433 1234577889999999999999999999999
Q ss_pred HhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 263 DANPAH---VKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 263 ~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
...|+. ..+.+|+|.+++..|+|++|+..++.
T Consensus 76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 76 ANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 987654 56899999999999999999999976
No 157
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0004 Score=67.31 Aligned_cols=134 Identities=11% Similarity=0.117 Sum_probs=89.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH------------
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK------------ 253 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~------------ 253 (414)
...+.-+|+.+...++..+|+-.|+.|.. +.|.. ..+|--+-.||+-.+.+++
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~----Lap~r-----------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQM----LAPYR-----------LEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHh----cchhh-----------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 34567788888888999999999988888 45443 3344444444444444444
Q ss_pred ------------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006 254 ------------------------SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 309 (414)
Q Consensus 254 ------------------------A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~ 309 (414)
|...++++|.++|...+|...+|..+...|.+..++..++++|...|+. .++..
T Consensus 399 ~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~ 476 (564)
T KOG1174|consen 399 QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNH 476 (564)
T ss_pred hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHH
Confidence 5555555667778888888888888888889999999999999888875 46666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 015006 310 LSKLKKQRQEVESKARKQFKGLFDKKPG 337 (414)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
|..+-....+..+. -..|...+...+.
T Consensus 477 Lgd~~~A~Ne~Q~a-m~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 477 LGDIMRAQNEPQKA-MEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhhhHHHH-HHHHHHHHhcCcc
Confidence 77665544443332 2344444444443
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.83 E-value=5e-05 Score=50.60 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 310 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l 310 (414)
.+++.+|.+|..+|++++|++.|+++++.+|+| ..+...|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHh
Confidence 355566666666666666666666666666665 4444443
No 159
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.4e-05 Score=75.44 Aligned_cols=84 Identities=19% Similarity=0.376 Sum_probs=65.4
Q ss_pred CCCCeEEEEEEEEeecCCCceEeeeccCCCCCceEEEcCCCCchHHHHHHhhhcCCCCeEEE--EecCCCccccCCCCCC
Q 015006 75 LHDSLLCVHYKGMLLNEEKKVFYDTRVDNDGQPLEFSSGEGLVPEGFEMCVRLMLPGEIALV--TCPPDYAYDKFLRPAN 152 (414)
Q Consensus 75 ~~~~~v~v~y~g~~~~~~g~~~~~s~~~~~~~p~~f~lG~~~v~~gle~~l~~M~~GE~~~v--~i~~~~~yg~~~~~~~ 152 (414)
..||.|+|+|.|+. +|..| .+. ..+.+.|.||.|.++|||+.+|.+|++|+...| ++|.+|.-+..
T Consensus 159 ~~gD~v~IDf~g~i---Dg~~f-egg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----- 226 (441)
T COG0544 159 ENGDRVTIDFEGSV---DGEEF-EGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----- 226 (441)
T ss_pred ccCCEEEEEEEEEE---cCeec-cCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----
Confidence 58999999999975 37777 333 345799999999999999999999999999774 55666543322
Q ss_pred CCCCcceEEEEEEcccCCCC
Q 015006 153 VPEGAHIQWEIELLGFEKPK 172 (414)
Q Consensus 153 ip~~~~l~~eieL~~~~~~~ 172 (414)
.|....|.|+|..+....
T Consensus 227 --aGK~a~F~V~vkeVk~~e 244 (441)
T COG0544 227 --AGKEATFKVKVKEVKKRE 244 (441)
T ss_pred --CCCceEEEEEEEEEeecC
Confidence 356689999999887643
No 160
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.81 E-value=0.00013 Score=50.47 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
..+|.+|.+++++|+|++|+..++.+|+++|+| ..+......++.++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N-~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN-RQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHh
Confidence 357889999999999999999999999999998 567766666655543
No 161
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.78 E-value=0.0017 Score=59.69 Aligned_cols=124 Identities=22% Similarity=0.297 Sum_probs=99.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-+.|...++.|+|.+|+..|..... ..|.++. .-.+.+.++-+++|.++|..|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~----~~p~s~~--------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS----RHPFSPY--------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCcc--------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 67778889999999999999999999887 5555532 24567789999999999999999999999999
Q ss_pred CCcH---HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHHHHHHH
Q 015006 266 PAHV---KGLYRRGMAYMALG--------EFEEAQRDFEMMMKVDKSSE--PDATAALSKLKKQRQEVE 321 (414)
Q Consensus 266 p~~~---ka~~r~g~a~~~l~--------~~~eA~~~~~~al~l~P~n~--~~~~~~l~~~~~~~~~~~ 321 (414)
|.++ -++|-+|.+++..= --.+|+..|+..+.--|+.. .+++..+..++..+...+
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 8764 57888999987642 24678899999999999863 466667777766665544
No 162
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00068 Score=59.71 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=70.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~-----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
-+.-+++.|+|.+|...|..||++.|.. .-.|.++|.|+++++.++.|+.++.+|++|+|.+.+ +......+..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k-Al~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK-ALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH-HHHHHHHHHH
Confidence 4556789999999999999999999865 346789999999999999999999999999998743 3222233333
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCc
Q 015006 316 QRQEVESKARKQFKGLFDKKPGEI 339 (414)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
++. .-...-.-|+++....++..
T Consensus 180 k~e-k~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KME-KYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhh-hHHHHHHHHHHHHHhCcchH
Confidence 332 22223345666666655443
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00015 Score=71.75 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
..++.-.|..+++.++|+.|+..++++..+.|+..++|+.+|.+|..+|+|+.|+..++.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 345555666666667777777777777777777777777777777777777777655553
No 164
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.76 E-value=4.3e-05 Score=73.77 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=88.1
Q ss_pred hhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006 180 DGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN 259 (414)
Q Consensus 180 ~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~ 259 (414)
.++..+...+-+.||.||-.|+|..|+..-+.-|.+....-. +.....+|.|+|.||+-+++|+.|+++|+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD---------rAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD---------RAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh---------HHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 345556778889999999999999999988887764322110 11224689999999999999999999999
Q ss_pred HHHHhC----C--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 260 KVLDAN----P--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 260 ~al~~d----p--~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
+++.+. . .-+...|.+|++|.-+.+|+.|+.++++-|.+.
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 876543 2 236678999999999999999999999988774
No 165
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.00035 Score=64.62 Aligned_cols=101 Identities=22% Similarity=0.248 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP--DATAALSK 312 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~--~~~~~l~~ 312 (414)
.+|.|.-+++.|+|..|...|..-+..-|++ +.|+|++|++++.+|+|+.|...|..+++-.|++++ ++..-|..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999876 789999999999999999999999999999998742 33333334
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCc
Q 015006 313 LKKQRQEVESKARKQFKGLFDKKPGEI 339 (414)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
+...+. .....+..++.+.++.++..
T Consensus 224 ~~~~l~-~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 224 SLGRLG-NTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHhc-CHHHHHHHHHHHHHHCCCCH
Confidence 433333 34445667777777766544
No 166
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00017 Score=67.90 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=77.3
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 270 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k 270 (414)
+.|..+++.|-+.+|.+.++.+|..+.. ...+.-++.+|.+..+...|+..+...|+.-|.++-
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~----------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT 291 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH----------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT 291 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc----------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh
Confidence 6788999999999999999999984332 235566778888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
-+.-.|++|..++++++|++.|+.+++++|.|
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n 323 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVLKLHPIN 323 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 88888888888888888888888888887766
No 167
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.73 E-value=8.6e-05 Score=49.45 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
++..+|.+|..+|++++|+..++++++.+|+|+.+++.+|++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 678899999999999999999999999999999999998863
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.00029 Score=69.90 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=75.0
Q ss_pred cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006 201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM 280 (414)
Q Consensus 201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~ 280 (414)
.-.+|.+.-.+|++ +++.| ..++..+|.+....++++.|+..+++|+.++|+.+.++|..|..+.
T Consensus 319 ~~~~a~~~A~rAve----ld~~D-----------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~ 383 (458)
T PRK11906 319 AAQKALELLDYVSD----ITTVD-----------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF 383 (458)
T ss_pred HHHHHHHHHHHHHh----cCCCC-----------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 34445555555555 55555 6688889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC
Q 015006 281 ALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 281 ~l~~~~eA~~~~~~al~l~P~n 302 (414)
..|+.++|++.+++|++++|.-
T Consensus 384 ~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 384 HNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HcCCHHHHHHHHHHHhccCchh
Confidence 9999999999999999999973
No 169
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.71 E-value=8.6e-05 Score=70.17 Aligned_cols=63 Identities=21% Similarity=0.342 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 239 LNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 239 ~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
--.|.-|+|+|.|++||.+|.+++.++|.|+-.+-+||.||+++..|..|..+|..|+.|+-.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~ 163 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL 163 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 357889999999999999999999999999999999999999999999999999999999754
No 170
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.70 E-value=0.00087 Score=55.11 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.+++++|.++-.+|+.++|+..|.+++..... -..++..+|.++..+|++++|+..|++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 36789999999999999999999999997543 3679999999999999999999999999999887
No 171
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00018 Score=72.01 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=91.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCC------------ChHHHHHH-------hhhhhHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ------------DDEEGKVF-------VGKRNLLHLNVAACLL 246 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~------------~~~e~~~~-------~~~~~~~~~N~a~~~~ 246 (414)
+..|..-|..+--.+..++|+.+|..|-+.+...... +.+-.+.+ -+.-.-++.-+|.+.+
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 4456667777777777777777777777754332110 00000000 0011235667888999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 247 KLGECRKSIEACNKVLDANP-------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 247 kl~~~~~A~~~~~~al~~dp-------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
+.+.|.+|+.++..+|..-+ .+.-.+.++|.++.++++|++|+..|++||.+.|.+ ..+...+.-+...+.
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~-~~~~asig~iy~llg 503 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD-ASTHASIGYIYHLLG 503 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhc
Confidence 99999999999999983321 234458899999999999999999999999999998 667777766654443
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.66 E-value=0.00014 Score=69.26 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=74.2
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
-..+..+...|+.+-..|+|.+|...|.+|..+..... + ......+|.+.+.||.+. ++.+|+..+.+|+
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~--~-------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~ 101 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG--D-------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAI 101 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC--C-------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence 34577778888888888999999999999988654322 1 112245677777777666 8888888888887
Q ss_pred HhC--C----CcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Q 015006 263 DAN--P----AHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKV 298 (414)
Q Consensus 263 ~~d--p----~~~ka~~r~g~a~~~l-~~~~eA~~~~~~al~l 298 (414)
.+- . .-++++.++|.+|... +++++|++.|++|+.+
T Consensus 102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 652 1 1267778888888887 8888888888888876
No 173
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.64 E-value=0.00013 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
.++.++|.+++++|+|++|+.++.++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 478899999999999999999999999999975
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.62 E-value=0.0022 Score=56.02 Aligned_cols=102 Identities=19% Similarity=0.304 Sum_probs=88.4
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..-...||.+...|+|.+|...|.+++.- +...+ ..+++.+|.+.+.++++..|....++..+.+|
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG---~fA~d-----------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSG---IFAHD-----------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcc---ccCCC-----------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 34456788889999999999999999973 22233 56788899999999999999999999999998
Q ss_pred C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 267 A--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 267 ~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
. .+..+.-.|.++..+|++.+|...|+.++.--|.-
T Consensus 156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 5 57888899999999999999999999999999984
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00091 Score=61.01 Aligned_cols=122 Identities=18% Similarity=0.153 Sum_probs=87.4
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHH-----------------HHhhhh------hHHHHHHHHHHHHc
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGK-----------------VFVGKR------NLLHLNVAACLLKL 248 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~-----------------~~~~~~------~~~~~N~a~~~~kl 248 (414)
.|..+-..|+|.+|++.|...|. -+|.+.--.+ .+.+.. ..++.-+|..|+.+
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~----ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLE----DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhc----cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 34455566889999999999887 5555432111 111111 23677788899999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 249 ~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~---~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
++|.+|+-++++++-+.|-|+-.+-|+|..++-+| ++.-|.+.|.+|++++|.| -.+...+-.+-..+.
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~-~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN-LRALFGIYLCGSALA 239 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh-HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876 5677899999999999865 334444555555554
No 176
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.60 E-value=0.00011 Score=45.74 Aligned_cols=32 Identities=31% Similarity=0.605 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
++|+.+|.++..+|++++|+..|++|++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57788888888888888888888888888874
No 177
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.57 E-value=0.00052 Score=69.88 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=88.7
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+..+.-..|..++|...++.-...|. -.|...+ .+.-.|..+..+|+-++|...+..++..|+.+
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~----k~~eHge-----------slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S 74 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK----KFPEHGE-----------SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS 74 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH----hCCccch-----------hHHhccchhhcccchHHHHHHHHHHhccCccc
Confidence 44455566777788888777777777 3444422 22335666778899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
.-+|.-.|..+....+|++|+++|..||+++|+| ..+.+-|..++.+++.
T Consensus 75 ~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN-~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 75 HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN-LQILRDLSLLQIQMRD 124 (700)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 5677777777665554
No 178
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.57 E-value=0.00027 Score=72.78 Aligned_cols=84 Identities=15% Similarity=0.196 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
.+...+|.-.+..++|.+|..+++..++++|-....||++|.|..+++++..|..+|.+++.++|+| ..+..++....-
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~-~eaWnNls~ayi 564 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN-AEAWNNLSTAYI 564 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc-hhhhhhhhHHHH
Confidence 3333344445567999999999999999999999999999999999999999999999999999998 788888887765
Q ss_pred HHHHH
Q 015006 316 QRQEV 320 (414)
Q Consensus 316 ~~~~~ 320 (414)
++.+.
T Consensus 565 ~~~~k 569 (777)
T KOG1128|consen 565 RLKKK 569 (777)
T ss_pred HHhhh
Confidence 55433
No 179
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.0023 Score=60.32 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=95.8
Q ss_pred hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
.++.|.-+.+.+..+....++..|.....+|+. .+|.. +.+-.-+|..++..|+|..|+..+..+
T Consensus 176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq----a~~~c-----------vRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 176 RVEIAQFYCELAQQALASSDVDRARELLKKALQ----ADKKC-----------VRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----hCccc-----------eehhhhhhHHHHhccchHHHHHHHHHH
Confidence 345677788888888888999999999999998 56655 445555899999999999999999999
Q ss_pred HHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 262 LDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 262 l~~dp~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
++.||+. +..+-.+..||.++|+.++.+..+.++.+..+.. ++...+..+.
T Consensus 241 ~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~li 292 (389)
T COG2956 241 LEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLI 292 (389)
T ss_pred HHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHH
Confidence 9999987 5678889999999999999999999999998874 3444444443
No 180
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.55 E-value=0.00089 Score=67.34 Aligned_cols=119 Identities=18% Similarity=0.035 Sum_probs=91.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
.......|..+...|+++.|.....++++ ..|++... ....-+....+..++...++..++++++.+
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~----~~pd~~~~---------~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLK----KLGDDRAI---------SLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHh----hCCCcccc---------hhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 44555677788899999999999999999 56655210 001112333445688899999999999999
Q ss_pred CCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 266 PAHV--KGLYRRGMAYMALGEFEEAQRDFE--MMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 266 p~~~--ka~~r~g~a~~~l~~~~eA~~~~~--~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
|+++ ..+..+|..++.+|+|++|.+.|+ ++++.+|++ . ....+..+..+..+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~-~~~~La~ll~~~g~ 385 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-N-DLAMAADAFDQAGD 385 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-H-HHHHHHHHHHHcCC
Confidence 9999 788899999999999999999999 688899985 3 34477777665544
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.55 E-value=0.0019 Score=58.41 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
...++..|..++..|+|.+|+..+++++...|.+ .+|.+.+|.+++..|+|++|+..|++.++..|++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 4567889999999999999999999999988764 78999999999999999999999999999999874
No 182
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.51 E-value=0.0032 Score=63.09 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=83.6
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 270 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k 270 (414)
..+....+.|++..|...|.+|.+ ..|++. .....-.+..++..|+++.|+..++++++.+|+++.
T Consensus 123 laA~aA~~~g~~~~A~~~l~~A~~----~~~~~~----------~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~ 188 (398)
T PRK10747 123 LAAEAAQQRGDEARANQHLERAAE----LADNDQ----------LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPE 188 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh----cCCcch----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 334455899999999999999998 555541 122233578899999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~ 304 (414)
++..++.+|...|++++|+..+.+..+..+.++.
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999999999999998888776533
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.50 E-value=0.0015 Score=67.10 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.-+++.+|.+|..+|++.+|+.+.++||+..|..+..|+.+|+++.+.|++.+|.+.++.|-.+|+.+
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh
Confidence 44678899999999999999999999999999999999999999999999999999999999999986
No 184
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0014 Score=63.67 Aligned_cols=113 Identities=17% Similarity=0.215 Sum_probs=86.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHH-----------------HHHHhhhhhH------HHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEE-----------------GKVFVGKRNL------LHLNVA 242 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e-----------------~~~~~~~~~~------~~~N~a 242 (414)
..-+-..|..+|..|++.+|+-.|.++.. ++|..-+. ......+... -++--+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 44566889999999999999999999887 55543111 1111111111 122223
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
...+-.++|..|+.+..++|..+|.+..||.-+|.++..+++.++|+-.|+.|..+.|..
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r 367 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYR 367 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhh
Confidence 345567899999999999999999999999999999999999999999999999999864
No 185
>PRK10941 hypothetical protein; Provisional
Probab=97.49 E-value=0.0014 Score=61.55 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 015006 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDA 306 (414)
Q Consensus 232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~ 306 (414)
.+....+.|+=.+|++.++|..|+.+++.+|.++|+++--+.-||.+|.++|.+..|+.+|+..++..|++ +.+
T Consensus 178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d-p~a 251 (269)
T PRK10941 178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED-PIS 251 (269)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc-hhH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999987 433
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.002 Score=59.99 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK---GLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k---a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
...++..|.-++..|+|.+|+..+++++...|.... +.+.+|.+|+++++|++|+..|++.++++|+++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC
Confidence 445677899999999999999999999999998754 459999999999999999999999999999884
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0043 Score=58.23 Aligned_cols=125 Identities=17% Similarity=0.134 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006 201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM 280 (414)
Q Consensus 201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~ 280 (414)
..+..+...+.-|. .+|.+ ..-+.-+|.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++
T Consensus 137 ~~~~l~a~Le~~L~----~nP~d-----------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 137 EMEALIARLETHLQ----QNPGD-----------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred cHHHHHHHHHHHHH----hCCCC-----------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34455555566666 67777 4556679999999999999999999999999999999999999998
Q ss_pred HcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcccc
Q 015006 281 ALG---EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDKKPGEISEV 342 (414)
Q Consensus 281 ~l~---~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
... .-.+|...|++|+++||+| ..+...|......... -+.....++.|++..+.+..-.
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~-iral~lLA~~afe~g~-~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPAN-IRALSLLAFAAFEQGD-YAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCCCchH
Confidence 864 3678999999999999998 5566666554433332 3344667888888776655443
No 188
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.42 E-value=0.00092 Score=54.90 Aligned_cols=61 Identities=21% Similarity=0.270 Sum_probs=57.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
-|.+....++.+.|++-|.++|.+-|.++-||.+|++++.-.|+-++|+.++++|+++...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence 4666778899999999999999999999999999999999999999999999999999754
No 189
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0041 Score=56.83 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006 235 NLLHLNVAACLLKLG---ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~---~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~ 285 (414)
..++..+|-.++-+| ++.-|..++.++|+++|.+..++|-+-.+...+-+.
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~ 241 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQI 241 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence 556777787777665 678899999999999998888888876666555433
No 190
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.39 E-value=0.00075 Score=67.97 Aligned_cols=111 Identities=20% Similarity=0.291 Sum_probs=94.5
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|-.+-..|+-..|+.+...|+. ..|... -....|+|.+.++-+-...|-....++|.+....
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~----~~p~~~----------~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se 675 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALN----LAPLQQ----------DVPLVNLANLLIHYGLHLDATKLLLQALAINSSE 675 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhc----cChhhh----------cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence 34566666788999999999999998 444321 2356789999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+-.+|-+|++++.+.+.+.|++.|+.|++++|++ ..+...|..+.
T Consensus 676 pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~-~~~~~~l~~i~ 720 (886)
T KOG4507|consen 676 PLTFLSLGNAYLALKNISGALEAFRQALKLTTKC-PECENSLKLIR 720 (886)
T ss_pred chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCC-hhhHHHHHHHH
Confidence 9999999999999999999999999999999998 67777776654
No 191
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.38 E-value=0.0011 Score=71.58 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.++..+|.||-++|++++|...++++|++||+|+-++-+.|..|... ++++|+..+.+|+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999 999999999999876
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.37 E-value=0.0015 Score=63.37 Aligned_cols=103 Identities=21% Similarity=0.219 Sum_probs=83.2
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+-+.||.+.-.|+|+.|++.|++++.....+... ..-+...+.+|.+|.-+++|..||.+..+-|.+..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999988754333221 12245667799999999999999999998776642
Q ss_pred ------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 267 ------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 267 ------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.-..|++.+|+++..+|..+.|+...++.+++
T Consensus 307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45889999999999999999999988888776
No 193
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.36 E-value=0.00098 Score=63.66 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=56.7
Q ss_pred HHHHHHHHHHH--cC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 015006 237 LHLNVAACLLK--LG--ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSK 312 (414)
Q Consensus 237 ~~~N~a~~~~k--l~--~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~ 312 (414)
+..++|.+++. .| .+.+|...|+......+.+++.+..+|.|++.+|+|++|...++.|+..+|.+ +++..++..
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-~d~LaNliv 243 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-PDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-HHHHHHHHH
Confidence 44455554443 33 58888888888777667888888889999999999999999999999988886 666666666
Q ss_pred HHHHH
Q 015006 313 LKKQR 317 (414)
Q Consensus 313 ~~~~~ 317 (414)
+...+
T Consensus 244 ~~~~~ 248 (290)
T PF04733_consen 244 CSLHL 248 (290)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 65443
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.30 E-value=0.0058 Score=51.39 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
...+++.|...++.|+|.+|+..++.+..--|- ...|.+.+|.+|+..++|++|+..+++-++|+|.|+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 446778899999999999999999999888775 478999999999999999999999999999999984
No 195
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.29 E-value=0.0015 Score=62.43 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=68.7
Q ss_pred cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 015006 201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYM 280 (414)
Q Consensus 201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~ 280 (414)
++..|...|..... ..+.+ ..+++.+|.|++.+|+|++|...+.+|+..+|.++.++.++..+..
T Consensus 182 ~~~~A~y~f~El~~----~~~~t-----------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 182 KYQDAFYIFEELSD----KFGST-----------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp CCCHHHHHHHHHHC----CS--S-----------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh----ccCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 46666666666443 11222 4677889999999999999999999999999999999999999999
Q ss_pred HcCCH-HHHHHHHHHHHhhCCCC
Q 015006 281 ALGEF-EEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 281 ~l~~~-~eA~~~~~~al~l~P~n 302 (414)
.+|+- +.+.+.+.+....+|++
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HhCCChhHHHHHHHHHHHhCCCC
Confidence 99998 66777888888899998
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.00072 Score=60.33 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=68.0
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
+.++.+++-+|..|-.+|-|.-|..+++++|.+.|.-+.++-.+|.-+...|+|+.|.+.|...+++||.++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~ 133 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 133 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence 345788999999999999999999999999999999999999999999999999999999999999999873
No 197
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0006 Score=61.62 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=64.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
-+.+++.-+.|..|+..+.+||.++|..+.-+-+++.||+++.+|+.+..++.+|++++|+. ......|....
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~ 88 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWL 88 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999986 45555555543
No 198
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.22 E-value=0.0016 Score=45.14 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~ 275 (414)
+++.+|.+++++|+|..|..+|+.+|+++|+|..|.--+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 667799999999999999999999999999998875443
No 199
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.20 E-value=0.0035 Score=65.21 Aligned_cols=115 Identities=16% Similarity=0.146 Sum_probs=94.3
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK 270 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k 270 (414)
..+..+.+.++-.+|..+..+|-.+ .| +....|+-+|.++...+++.+|...|..|+.+||+++.
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~~----~~-----------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASKI----DP-----------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhc----ch-----------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 3344444556666676677776663 22 23678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 271 GLYRRGMAYMALGEFEEAQR--DFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~--~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
+..-+|.++...|+-.-|.. .+..|+++||.| .++...|..+-+++-..+
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchH
Confidence 99999999999998777777 999999999999 789999999877665444
No 200
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.18 E-value=0.0039 Score=63.70 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=83.1
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+...|-.+-..++|.+|+++|+.|+. +.++| ..++..+|..+.++++|......=.+.|++.|.
T Consensus 77 CwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN-----------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 77 CWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDN-----------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCc-----------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 344566666777899999999999999 77777 678888999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
+-..|+-.|.++..+|++..|...++.-.+..
T Consensus 142 ~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 142 QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998777666654
No 201
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0021 Score=60.06 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=75.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
|....+.|-.+|+.|+|+.|++.|+.|+.+ .... .-+-+|+|.|+++.++|..|+++...+++.-
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqv----sGyq-----------pllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQV----SGYQ-----------PLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhh----cCCC-----------chhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 667788999999999999999999999983 3222 4567899999999999999999999887542
Q ss_pred ----CC-------------------------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 015006 266 ----PA-------------------------HVKGLYRRGMAYMALGEFEEAQRDF 292 (414)
Q Consensus 266 ----p~-------------------------~~ka~~r~g~a~~~l~~~~eA~~~~ 292 (414)
|. -+.|+--++-+++..++++.|.+.+
T Consensus 209 ~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 209 IRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred hhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 21 1567777788889999999888765
No 202
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.11 E-value=0.0022 Score=68.37 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=66.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
+.-+|..|++.+++..|+.+++.||+.+|.+..++.-+|.||...|+|.-|++.|.+|..++|.+ .-.+.-...++.
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMEC 641 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHH
Confidence 34488889999999999999999999999999999999999999999999999999999999997 334443343333
No 203
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.10 E-value=0.002 Score=68.63 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=91.3
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+-.+|-.+.+.+++..|+..|+.|++ .+|.+ ..++.-++.+|...|.|..|++.+++|..++|.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR----~dPkD-----------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALR----TDPKD-----------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhc----CCchh-----------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 455699999999999999999999999 88888 779999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
+.-+.|..|.....+|+|.+|+..+...+....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887643
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.10 E-value=0.00095 Score=41.38 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
.+|.++|.+|.++|++++|+.++.++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 478899999999999999999999999999854
No 205
>PRK15331 chaperone protein SicA; Provisional
Probab=97.07 E-value=0.012 Score=50.79 Aligned_cols=81 Identities=6% Similarity=-0.118 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
..+-.|.-++..|+|++|...|.-...+||.|.+-++-+|-|+..+++|++|+..|..|..+++++ +..-.....|.-.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~ 117 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHH
Confidence 344577778999999999999999999999999999999999999999999999999999998876 4444455555444
Q ss_pred HH
Q 015006 317 RQ 318 (414)
Q Consensus 317 ~~ 318 (414)
+.
T Consensus 118 l~ 119 (165)
T PRK15331 118 MR 119 (165)
T ss_pred hC
Confidence 43
No 206
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.01 Score=52.32 Aligned_cols=100 Identities=17% Similarity=0.238 Sum_probs=79.7
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
...+.+..++..+++..|....+.++. .+.+ ..+...+-.++|.+.+.++.+++|+...+..-. .
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~-----~t~D-------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---~ 155 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALA-----QTKD-------ENLKALAALRLARVQLQQKKADAALKTLDTIKE---E 155 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHc-----cchh-------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---c
Confidence 445667778888999999999999997 3443 235566788999999999999999988765522 3
Q ss_pred cHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 268 HVKG--LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 268 ~~ka--~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+..+ --.+|.+++..|+-++|+..|.+|++.++++
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3333 5678999999999999999999999998664
No 207
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.01 E-value=0.015 Score=57.82 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=90.1
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
.++|..|+..+++... ..|. +..-+|.+++.+++-.+|+....++|...|.+...+.-.|..
T Consensus 182 t~~~~~ai~lle~L~~----~~pe--------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE----RDPE--------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred cccHHHHHHHHHHHHh----cCCc--------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3568888888887666 3332 233488999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 015006 279 YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKA 324 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~ 324 (414)
++..++++.|+...++|.++.|++ -.....|..+.-.+...+..-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999997 678888998887777666543
No 208
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.00 E-value=0.0013 Score=40.36 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
|+|++|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 6778888888888888888888888887776
No 209
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.96 E-value=0.0097 Score=49.20 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGE---CRKSIEACNKVLD-ANPA-HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAA 309 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~---~~~A~~~~~~al~-~dp~-~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~ 309 (414)
..+.+|+|.|+.+..+ -.+.+..++..++ -.|. .-..+|.+|..|+++++|+.|+.++...|+.+|+| ..+...
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n-~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN-RQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc-HHHHHH
Confidence 5678999999998765 5667788888886 3443 45688999999999999999999999999999998 566655
Q ss_pred HHHHHHHHH
Q 015006 310 LSKLKKQRQ 318 (414)
Q Consensus 310 l~~~~~~~~ 318 (414)
-..++.++.
T Consensus 111 k~~ied~it 119 (149)
T KOG3364|consen 111 KETIEDKIT 119 (149)
T ss_pred HHHHHHHHh
Confidence 555554443
No 210
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.96 E-value=0.012 Score=60.50 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=92.9
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-------------HHHhhhhh---------HHHHHHHHHHHHc
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-------------KVFVGKRN---------LLHLNVAACLLKL 248 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-------------~~~~~~~~---------~~~~N~a~~~~kl 248 (414)
--+...+..|+...|......|.. ..|.+++-+ +..+.+.. .+|..-+....-+
T Consensus 589 M~ake~w~agdv~~ar~il~~af~----~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFE----ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHH----hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh
Confidence 345566777888888888888887 455443211 11111211 2555556666678
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 015006 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQR 317 (414)
Q Consensus 249 ~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~ 317 (414)
++.++|+..|+.+|+.-|...|.|..+|+++-.+++.+.|.+.|...++..|.. .-+.-.|.++..+.
T Consensus 665 d~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~-ipLWllLakleEk~ 732 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS-IPLWLLLAKLEEKD 732 (913)
T ss_pred hhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC-chHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987 45777777776554
No 211
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.88 E-value=0.0017 Score=38.50 Aligned_cols=32 Identities=34% Similarity=0.720 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.+++++|.++..+++++.|+..|.++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45667777777777777777777777766664
No 212
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.0056 Score=62.45 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=88.4
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP 266 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp 266 (414)
..+.+.+..+|+..+|..|++.|...+.++. .+.. ....+.+.-|++.||+++.+.+.|.+++..|=+.||
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~----~D~~-----~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~ 425 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII----SDNY-----SDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR 425 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc----chhh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc
Confidence 4567889999999999999999999999643 2211 112267888999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.++-..+..-++...-+.-++|+..+.+....
T Consensus 426 ~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 426 QSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 99999999999999999999999988877655
No 213
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.87 E-value=0.001 Score=41.55 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.0
Q ss_pred HHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006 208 KYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 255 (414)
Q Consensus 208 ~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~ 255 (414)
+|++||+ ++|.+ ..+|+|+|.+|...|++++|+
T Consensus 1 ~y~kAie----~~P~n-----------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIE----LNPNN-----------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHH----HCCCC-----------HHHHHHHHHHHHHCcCHHhhc
Confidence 4889999 78988 789999999999999999986
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.017 Score=53.17 Aligned_cols=114 Identities=17% Similarity=0.288 Sum_probs=87.6
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCC-------------ChHHHH-----------HHh--hhhhHHHHHHH
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQ-------------DDEEGK-----------VFV--GKRNLLHLNVA 242 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~-------------~~~e~~-----------~~~--~~~~~~~~N~a 242 (414)
.....+.+...|.|.-.+..|.+.++..+...|. +.+..+ .+. .....++-|.|
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445667777888888888888877743222221 111000 011 12345788899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
..|+-.++|..|...+++++..||.++-|.-++|.|++.+|+...|++.++.++...|..
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999974
No 215
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.016 Score=54.97 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
-|---|.-|+|.++|..|+..|++.|...-. |+-.|.+||-|.+.+|+|..|+.++.+|+.++|.+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 4445678899999999999999999987533 466789999999999999999999999999999984
No 216
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0071 Score=57.80 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=61.8
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH---------
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL--------- 262 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al--------- 262 (414)
.|-.+|..|+|++|+..|+-+.. ....+ ..+..|+|.|++-+|.|.+|.....+|-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~----~~~~~-----------~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLl 127 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMN----KDDAP-----------AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLL 127 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhc----cCCCC-----------cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 35678999999999999988776 22212 3456666777666666666665544331
Q ss_pred -----HhC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 015006 263 -----DAN------------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKK 315 (414)
Q Consensus 263 -----~~d------------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~ 315 (414)
+++ .+...-...+|..++..-.|.+|+..|.++|.-+|+- ..+...+..|--
T Consensus 128 fhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey-~alNVy~ALCyy 196 (557)
T KOG3785|consen 128 FHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY-IALNVYMALCYY 196 (557)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh-hhhHHHHHHHHH
Confidence 111 0112223334555555556666666666666666553 334444444433
No 217
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.67 E-value=0.0024 Score=63.29 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.+-|-|.-.++-+.|+.|+..|.+||+++|+++--+-+|++|+.+.++|..|+.++.+|++++|..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 344567778899999999999999999999999999999999999999999999999999999986
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.011 Score=56.40 Aligned_cols=87 Identities=20% Similarity=0.274 Sum_probs=66.7
Q ss_pred cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR 274 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r 274 (414)
++....+|..|+...+-.+. +. .+|+ ..+-.=+|.|++++|+|++|+..++-+.+-+..+.+...+
T Consensus 31 dfls~rDytGAislLefk~~----~~---~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn 96 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLN----LD---REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN 96 (557)
T ss_pred HHHhcccchhHHHHHHHhhc----cc---hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence 44566788888877665553 11 1111 2233348999999999999999999999988788999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 015006 275 RGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 275 ~g~a~~~l~~~~eA~~~~~~a 295 (414)
+|.|++.+|.|.+|...-.+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998765554
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.62 E-value=0.0041 Score=39.30 Aligned_cols=29 Identities=24% Similarity=0.436 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
||.++|.+|..+|+|++|+..|+++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 57889999999999999999999966553
No 220
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.61 E-value=0.058 Score=49.09 Aligned_cols=102 Identities=25% Similarity=0.271 Sum_probs=77.4
Q ss_pred hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhC
Q 015006 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-------CRKSIEACNKVLDAN 265 (414)
Q Consensus 193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~-------~~~A~~~~~~al~~d 265 (414)
+..+-....+..|+..|.-||-......... ...+.+++.+|.+|-.+++ +..|+..+.+|++..
T Consensus 84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~~--------s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 84 PRDFSGERTLEEAIESYKLALLCAQIKKEKP--------SKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3366677789999999999997544332222 2346789999999999998 555666666666554
Q ss_pred C------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 266 P------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 266 p------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
. +....+|-+|..+..+|++++|+.+|.+++..--.+
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 2 236889999999999999999999999999875443
No 221
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.0019 Score=55.88 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=36.3
Q ss_pred EEcCCCCchHHHHHHhhhcCCCCeEEEEecCCCccccCCC
Q 015006 110 FSSGEGLVPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLR 149 (414)
Q Consensus 110 f~lG~~~v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~ 149 (414)
|++|.+++++|++.++.+|+.||+..+.+||+++||..+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~ 40 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGR 40 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCccccccccc
Confidence 4688999999999999999999999999999999995443
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.57 E-value=0.015 Score=55.81 Aligned_cols=118 Identities=21% Similarity=0.203 Sum_probs=90.0
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCC---------CCC----hHHHH---------------HHhhhhhH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---------PQD----DEEGK---------------VFVGKRNL 236 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~---------p~~----~~e~~---------------~~~~~~~~ 236 (414)
++....+.|..++...++.+|+..+++.|..+.... +.- .+-.. .-......
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677889999999999999999999887554321 100 00000 01123446
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAH-----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~-----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+|.|++..+-++.+|.+++.+++-.+.+-... -.++.-+|+||..++.|+.|++.|++|++...++
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 89999999999999999999999998875433 3678889999999999999999999999985544
No 223
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.54 E-value=0.0042 Score=55.92 Aligned_cols=60 Identities=25% Similarity=0.451 Sum_probs=56.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
...+.++.+.|.+.+.++|++-|.+...|||.|.-..+.|+++.|.+.|.+.|+++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345678999999999999999999999999999999999999999999999999999864
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.49 E-value=0.018 Score=58.94 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=79.2
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|..+..+|+.+.|+..|++++. . . ..+.++...++..+|.|++-+.+|++|..++.+.++.+ .+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~----~----q---~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~W 337 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIE----S----Q---SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KW 337 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhcc----c----h---hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-cc
Confidence 55677888889999999999999885 1 1 12345557799999999999999999999999988855 46
Q ss_pred HHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q 015006 269 VKGL--YRRGMAYMALGEF-------EEAQRDFEMMMKVD 299 (414)
Q Consensus 269 ~ka~--~r~g~a~~~l~~~-------~eA~~~~~~al~l~ 299 (414)
.+|+ |-.|.|+..+++. ++|.+.|.++-.+-
T Consensus 338 Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 338 SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 6766 4568899999999 88888888776653
No 225
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.064 Score=54.61 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=84.4
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHH-----------------HHHhh-----hhhHHHHHHHHH
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEG-----------------KVFVG-----KRNLLHLNVAAC 244 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~-----------------~~~~~-----~~~~~~~N~a~~ 244 (414)
..+...-|.+-+.++|++|+....+.+. ..|++...- ..... ......+-.|.|
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~----~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILS----IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHh----cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHH
Confidence 3444555667778889999888888887 344432211 00000 111223678999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHH
Q 015006 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLK 314 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~~ 314 (414)
+++++..++|+...+ -+++...+.+.-+|+.++.+++|++|+..|+..++-+-++ +.+.+.++..+.
T Consensus 89 ~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 999999999999988 5677778999999999999999999999999998776543 233444444443
No 226
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.41 E-value=0.027 Score=49.08 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE----------FEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~----------~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
|+.|.+.+..+...+|.++.+++|-|-|+..+.+ +++|+.-|+.||.++|+. .++.-.+..+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~-hdAlw~lGnA~ 79 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK-HDALWCLGNAY 79 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHH
Confidence 7889999999999999999999999999999855 467899999999999996 55555555443
No 227
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.40 E-value=0.033 Score=57.41 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+++=.+.++...|++++|+.+....-..-.+....+-.+|.+++.+|++++|...|...|+.+|+| ......|..+.
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn-~~Yy~~L~~~~ 82 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDN-YDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHH
Confidence 333456777889999999999988877778889999999999999999999999999999999998 55666666654
No 228
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.14 Score=52.17 Aligned_cols=131 Identities=15% Similarity=0.272 Sum_probs=86.1
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN----- 265 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d----- 265 (414)
+++-.+|+.++.++|+..++ .+++.+ ..+..-+|..++++++|++|+..|...++-+
T Consensus 84 EKAYc~Yrlnk~Dealk~~~-------~~~~~~-----------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK-------GLDRLD-----------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh-------cccccc-----------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 44445556666666666655 122222 2345558999999999999999998875332
Q ss_pred -------------------------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHH
Q 015006 266 -------------------------P-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV-------DKSSEPDATAALSK 312 (414)
Q Consensus 266 -------------------------p-~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l-------~P~n~~~~~~~l~~ 312 (414)
| +.-.-+|+.|.++...|+|.+|++.+++|+++ +-.++.++..++..
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 2 24567899999999999999999999999554 22333566777776
Q ss_pred HHHHH------HHHHHHHHHHHHhhccCCCCCc
Q 015006 313 LKKQR------QEVESKARKQFKGLFDKKPGEI 339 (414)
Q Consensus 313 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
++-++ .-+.++....|...+.....+.
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 65332 1233444556777776654443
No 229
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.34 E-value=0.0068 Score=36.96 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+++++|.|+.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 57899999999999999999999999998874
No 230
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.33 E-value=0.0069 Score=35.67 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
.++.++|.|+..++++..|+..+.+++.++|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 368899999999999999999999999998853
No 231
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.32 E-value=0.01 Score=56.88 Aligned_cols=99 Identities=20% Similarity=0.215 Sum_probs=81.3
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA--- 267 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~--- 267 (414)
..|+.+...+.|++|++.|++|+++........ +...++..++..|-.+++|++|+-+..+|+++-.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~---------LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l 197 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAM---------LELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL 197 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCce---------eeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence 378888999999999999999999754332211 22457888999999999999999999999877432
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 268 -------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 268 -------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
..-++|+++.++..+|++-.|.+.++.|.++
T Consensus 198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 2457899999999999999999999999876
No 232
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.32 E-value=0.0075 Score=38.09 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+|.|+|.+|.++|+|++|+..++++|.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.028 Score=51.29 Aligned_cols=98 Identities=10% Similarity=0.125 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDA------------------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~------------------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
+.++--.|.-++++|+|.+|...|..|+.. +..+.--+.+.++|++..++|-++++.+..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 346666888899999999999999888632 22345678899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q 015006 297 KVDKSSEPDATAALSKLKKQRQEVESK-ARKQFKGLFDKK 335 (414)
Q Consensus 297 ~l~P~n~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~ 335 (414)
..+|.| ++....+.+......+.. .+.-+++.+...
T Consensus 258 ~~~~~n---vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHHPGN---VKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcCCch---HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 999998 344445544444333222 233344444443
No 234
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.22 E-value=0.075 Score=46.22 Aligned_cols=95 Identities=31% Similarity=0.510 Sum_probs=72.3
Q ss_pred cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHH
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA-HVKGLY 273 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~-~~ka~~ 273 (414)
.++..|++..|+..|.+++. ..+.. ......+.+++..+...+++..|+..+.+++...+. ...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 139 ALYELGDYEEALELYEKALE----LDPEL--------NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh----cCCCc--------cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 77788899999999999866 33310 001334555555577788888888888888888888 688888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 274 RRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 274 r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.++.++...+.+.+|+..+..++...|.
T Consensus 207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 8888888888888888888888888876
No 235
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.19 E-value=0.025 Score=53.22 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
.+-+|.|.-..+.|+.++|...+.-||.++|.++.++.+.|+....-++.-+|-.+|-+||.++|.|.
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 34556777778899999999999999999999999999999999999999999999999999999984
No 236
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.18 E-value=0.18 Score=49.07 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=91.4
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
.+..+|...-..|-.-+-.|+|..|.+.-.++-+ ..+. ...+|.--|.+...+|+++.|=.+..+
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae----~~e~-----------p~l~~l~aA~AA~qrgd~~~an~yL~e 143 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAE----HGEQ-----------PVLAYLLAAEAAQQRGDEDRANRYLAE 143 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhh----cCcc-----------hHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4566788888899999999999999999988776 2211 245667677888889999999999988
Q ss_pred HHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 261 VLDANP-AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 261 al~~dp-~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+-+..+ ++.-.+.-+++.+...|++..|...+.+++++.|.+ +.+.....++.
T Consensus 144 aae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~-~~vlrLa~r~y 197 (400)
T COG3071 144 AAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH-PEVLRLALRAY 197 (400)
T ss_pred HhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC-hHHHHHHHHHH
Confidence 888833 456677888899999999999999999999999988 44444444443
No 237
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.04 E-value=0.049 Score=42.29 Aligned_cols=65 Identities=25% Similarity=0.338 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHHHH
Q 015006 254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKLKKQRQ 318 (414)
Q Consensus 254 A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~~~~~~ 318 (414)
.+..+.++++.+|+++.+.|.+|.+++..|++++|++.|..+++.+++. ...++..+-.+-..+.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 3567788999999999999999999999999999999999999998864 2356666665554443
No 238
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.14 Score=46.53 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=76.0
Q ss_pred hhhcccccc-ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 015006 191 VTGNRLFKE-GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH- 268 (414)
Q Consensus 191 ~~Gn~~fk~-g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~- 268 (414)
+.|..+-.. .+++.|+.+|.+|-.++..-.. ......|++..|.--..+++|.+|+..++++....-+|
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees---------~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEES---------VSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 444333333 6889999999999987653211 22335677777877888999999999999987654433
Q ss_pred -----HHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 269 -----VKGL-YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 269 -----~ka~-~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+|.| ++.|.||+-..+.-.|...+++-.+++|..
T Consensus 189 LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 189 LLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 5554 566888888889889999999999999976
No 239
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.94 E-value=0.085 Score=45.85 Aligned_cols=102 Identities=30% Similarity=0.406 Sum_probs=83.2
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHH-HHHHcCCHHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAA-CLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~-~~~kl~~~~~A~~~~~~al~ 263 (414)
....+...|......+++..|+..+..++. ..+.+ .......+. ++...+++..|+..+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALA----LDPDP-----------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----CCCCc-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355667778888888889999999999998 33333 112222333 89999999999999999999
Q ss_pred hCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 264 ANP---AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 264 ~dp---~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.+| .....++.++..+...++++.|+..+.+++...+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 887 56788888888889999999999999999999988
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.91 E-value=0.063 Score=49.51 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
..-++|-|...+.-|+|.+|+..++.+....|. ..++.+-++.|+++.++|++|+..+++-+++.|.++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~ 105 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC
Confidence 567888999999999999999999999988775 478999999999999999999999999999999874
No 241
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.77 E-value=0.059 Score=43.16 Aligned_cols=103 Identities=13% Similarity=0.183 Sum_probs=70.0
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHH----HHHcCCHHHHHHHHHHHHHhCCC
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAAC----LLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~----~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
.+..+|.+|++-+|++.-++.+. ..+.+...+ .++.+...++..+|.. -.|.--...+++.+.++..+.|.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~----~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS----RHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD 76 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH----HccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence 45678999999999999999987 333332111 2222223333333321 11111245678888999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
.+..+|.+|+-+-....|++++...+++|.+.
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 98899999888888888888988888888763
No 242
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.1 Score=48.65 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=66.2
Q ss_pred hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 232 GKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 232 ~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.....+..|+=..++..++|..|+.+..+.|.++|.++-.+.-+|-+|.++|.+.-|+.++...++..|+.
T Consensus 178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 34466788888999999999999999999999999999999999999999999999999999999999986
No 243
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=0.3 Score=46.39 Aligned_cols=123 Identities=13% Similarity=-0.003 Sum_probs=89.5
Q ss_pred CCchhhhhHHHHHHHhhhccccccc-cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006 176 GLSFDGIMDEAEKIRVTGNRLFKEG-KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKS 254 (414)
Q Consensus 176 ~~~~~e~~~~a~~~k~~Gn~~fk~g-~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A 254 (414)
.++++.....+..+.+-|..+++++ +|..|+...++|.++++.. +..........+++..++..++.+|+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~-~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKP-GKMDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhh-hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4566777788999999999999999 9999999999999987531 1111112234567888999999999999987654
Q ss_pred HHHHHHHHH----hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 255 IEACNKVLD----ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 255 ~~~~~~al~----~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
.. |..+++ --|+.+-.++-.=.++...++.+++.+.+.+++.--+
T Consensus 104 ~k-a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 104 EK-ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HH-HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 44 444443 3366666664555556667889999998988887643
No 244
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.60 E-value=0.0041 Score=59.17 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=55.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
.+..|.++.|+++|..+|.++|.++--|-.||.+++++++...|+.+|..|++++|+..
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccc
Confidence 34568899999999999999999999999999999999999999999999999999863
No 245
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.60 E-value=0.69 Score=46.58 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 015006 202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~ 281 (414)
...-...|+.|+.- .+.+ ..++++-..-..|.+.|.+.-..|.++|...|+++..|.--|.=.+.
T Consensus 87 ~~rIv~lyr~at~r----f~~D-----------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe 151 (568)
T KOG2396|consen 87 PNRIVFLYRRATNR----FNGD-----------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE 151 (568)
T ss_pred HHHHHHHHHHHHHh----cCCC-----------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh
Confidence 34456778888874 3334 66777776666677779999999999999999999999999988888
Q ss_pred cCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006 282 LGE-FEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQ 327 (414)
Q Consensus 282 l~~-~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (414)
.+. .+.|++.|.++|+.+|++ +.+..+.-++.-...+.-..++..
T Consensus 152 ~n~ni~saRalflrgLR~npds-p~Lw~eyfrmEL~~~~Kl~~rr~~ 197 (568)
T KOG2396|consen 152 INLNIESARALFLRGLRFNPDS-PKLWKEYFRMELMYAEKLRNRREE 197 (568)
T ss_pred hccchHHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 999999999999999998 677777766654444333333333
No 246
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.47 E-value=0.17 Score=44.69 Aligned_cols=102 Identities=18% Similarity=0.137 Sum_probs=76.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
-..+.+.|+.+++.|++..|++.|.++..++.. ......+++++..+.+-.++|..+..+..+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456778999999999999999999998885321 22346788899999999999999999999886543
Q ss_pred C--CcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 266 P--AHVK----GLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 266 p--~~~k----a~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
. .++. .....|.+++..++|..|-..|-.++.-.
T Consensus 104 ~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 104 EKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 2 2222 22234677778899999998887765443
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.56 Score=44.24 Aligned_cols=111 Identities=20% Similarity=0.285 Sum_probs=81.2
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH--------
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK-------- 260 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~-------- 260 (414)
...++..+...|++..|...|..++. ..|.+ ..+..-+|.||+.+|+.+.|...+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~----~~~~~-----------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQ----AAPEN-----------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHH----hCccc-----------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 45677889999999999999999999 45554 34556688888888887555443322
Q ss_pred --------------------------HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q 015006 261 --------------------------VLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS-EPDATAALSKL 313 (414)
Q Consensus 261 --------------------------al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n-~~~~~~~l~~~ 313 (414)
.+..||++..+-+.+|..+...|+.++|.+.|-..++.+-.. +..+++.|-.+
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~ 281 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL 281 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 224568999999999999999999999999998888875431 12355444444
Q ss_pred H
Q 015006 314 K 314 (414)
Q Consensus 314 ~ 314 (414)
-
T Consensus 282 f 282 (304)
T COG3118 282 F 282 (304)
T ss_pred H
Confidence 3
No 248
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.37 E-value=0.19 Score=52.03 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=91.5
Q ss_pred ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006 198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 277 (414)
Q Consensus 198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~ 277 (414)
-.++.++|+++...+|+. .|.. ..+|+-+|..+-.+++.+.|...|..-++..|..+--|.-++.
T Consensus 663 ~ld~~eeA~rllEe~lk~----fp~f-----------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKS----FPDF-----------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred HhhhHHHHHHHHHHHHHh----CCch-----------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 446677788888888874 3333 5789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCC
Q 015006 278 AYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEV-ESKARKQFKGLFDKKPG 337 (414)
Q Consensus 278 a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 337 (414)
.--..|..-.|...|.++.-.+|.| ..+ .|..++-.++.- .........+.++..++
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~-~~l--wle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKN-ALL--WLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCc-chh--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999998 334 344444333321 11223344444444443
No 249
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.36 E-value=0.059 Score=55.73 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+...|-.+...|++++|...|++|+. +.| + ...|..+|.++...|++++|+..+.+|+.++|..
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~----L~p-s-----------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAID----LEM-S-----------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-C-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 33455566678999999999999999 665 3 4589999999999999999999999999999988
Q ss_pred HH
Q 015006 269 VK 270 (414)
Q Consensus 269 ~k 270 (414)
+.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 75
No 250
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.34 E-value=0.21 Score=40.65 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=78.3
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHH----HHHHh
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACN----KVLDA 264 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~----~al~~ 264 (414)
+-..|+..|+.+++-.|+-.|++|+.....+...++.+...+.-..+...-|+|.-+..+|+-+-.+++.+ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 44678889999999999999999999877665444444445555566778899999999999988888775 56777
Q ss_pred CCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 265 NPAHVKGLYRRGMA-YMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 265 dp~~~ka~~r~g~a-~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
-|..+..- ..+ --.+|--..|+-+| ++..|+ +.+.+.++
T Consensus 84 iPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHPN--P~iA~~vq 123 (140)
T PF10952_consen 84 IPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHPN--PEIARLVQ 123 (140)
T ss_pred ccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCCC--HHHHHHHH
Confidence 77654321 112 22344445555444 466776 44544443
No 251
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.17 Score=47.67 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=66.8
Q ss_pred ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006 198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGM 277 (414)
Q Consensus 198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~ 277 (414)
+..+|..|+++..--.+ ..|.+ ...++-+|.||+...+|..|..++++.-.+-|...+-.+..|+
T Consensus 22 ~d~ry~DaI~~l~s~~E----r~p~~-----------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELE----RSPRS-----------RAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQ 86 (459)
T ss_pred HHhhHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 44566667666555444 44444 4567779999999999999999999999999999998889999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 015006 278 AYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 278 a~~~l~~~~eA~~~~~~a 295 (414)
.+++.+.|..|+......
T Consensus 87 SLY~A~i~ADALrV~~~~ 104 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLL 104 (459)
T ss_pred HHHHhcccHHHHHHHHHh
Confidence 999999999998765543
No 252
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.27 E-value=0.12 Score=57.33 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP--------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp--------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
..++.++|.+++..|++..|...+.+++.+-. ...-.+..+|.++...|++++|...+.+++.+.
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 34678899999999999999999999887621 123345677889999999999999999998863
No 253
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.27 E-value=0.041 Score=35.31 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
+.+++|+|.+|..+|+|.+|+..+.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 346677777777777777777777777654
No 254
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.20 E-value=0.15 Score=54.91 Aligned_cols=112 Identities=11% Similarity=0.035 Sum_probs=68.6
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCC---------------hHH-HHHHhhh----hhHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEE-GKVFVGK----RNLLHLNVAACL 245 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~---------------~~e-~~~~~~~----~~~~~~N~a~~~ 245 (414)
...+...-+.+.+.|.+++|...|........ +.|.. -++ .+.+... ....|..+..++
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g-~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC-CCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 44455555566667777777777766654211 12211 000 0111110 134566666677
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 246 ~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.+.|+++.|...+++++.++|+++..|..+.++|...|++++|.+.++...+.
T Consensus 505 ~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 77788888888888888888877777777888888888888888777766543
No 255
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.00 E-value=0.49 Score=50.59 Aligned_cols=112 Identities=21% Similarity=0.213 Sum_probs=79.7
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHH
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYR 274 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~dp~~~ka~~r 274 (414)
....++|..|.....+.++ ..|.. ..+..--|..++++|.+++|. .|-.++. ..+++--.+--
T Consensus 19 ~ld~~qfkkal~~~~kllk----k~Pn~-----------~~a~vLkaLsl~r~gk~~ea~-~~Le~~~~~~~~D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLK----KHPNA-----------LYAKVLKALSLFRLGKGDEAL-KLLEALYGLKGTDDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHH----HCCCc-----------HHHHHHHHHHHHHhcCchhHH-HHHhhhccCCCCchHHHHH
Confidence 3456788899999999888 44443 223333678889999999999 5555554 44566777788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 015006 275 RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKAR 325 (414)
Q Consensus 275 ~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~ 325 (414)
+-.+|..++++++|...|++++..+|+ . +....+--+.-+...+++.++
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e-ell~~lFmayvR~~~yk~qQk 131 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQKYPS-E-ELLYHLFMAYVREKSYKKQQK 131 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhCCc-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998 3 344444444444444444333
No 256
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.3 Score=45.28 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=58.9
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 239 LNVAACLLKL----GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 239 ~N~a~~~~kl----~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
+-+|.++.++ ..+.+|...|+..-+--|.++.-+.-+|.|++.+++|++|...++.||..+++. ++...++-.+.
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a 251 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHH
Confidence 3355555554 357888888888777567788899999999999999999999999999999887 56666665554
Q ss_pred HH
Q 015006 315 KQ 316 (414)
Q Consensus 315 ~~ 316 (414)
..
T Consensus 252 ~~ 253 (299)
T KOG3081|consen 252 LH 253 (299)
T ss_pred HH
Confidence 43
No 257
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.92 E-value=0.2 Score=55.53 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANP-----AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-----~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
.++.++|.+++..|++++|...+.+++.+.. ..+.++..+|.++...|++++|...+.+++.+.
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999987632 235677779999999999999999999998763
No 258
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=94.75 E-value=0.075 Score=50.07 Aligned_cols=84 Identities=20% Similarity=0.221 Sum_probs=67.7
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
+..|......+....+.|+.++|...|..|+. +.|.+ ..++..++...-.-++.-+|-++|.+||
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAla----laP~~-----------p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALA----LAPTN-----------PQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHh----cCCCC-----------HHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 33455555566678899999999999999999 78888 4466667776666678888999999999
Q ss_pred HhCCCcHHHHHHHHHHHHH
Q 015006 263 DANPAHVKGLYRRGMAYMA 281 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~ 281 (414)
.++|.|.+|+-+|++..--
T Consensus 178 tisP~nseALvnR~RT~pl 196 (472)
T KOG3824|consen 178 TISPGNSEALVNRARTTPL 196 (472)
T ss_pred eeCCCchHHHhhhhccchH
Confidence 9999999999999876543
No 259
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=94.75 E-value=0.033 Score=48.06 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=22.4
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCC
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSP 25 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~ 25 (414)
||.+|++||++.|.|||++|||..
T Consensus 51 aL~gm~~Ge~~~v~ipp~~ayG~~ 74 (156)
T PRK15095 51 QLLGLKVGDKKTFSLEPEAAFGVP 74 (156)
T ss_pred HHcCCCCCCEEEEEEChHHhcCCC
Confidence 688999999999999999999974
No 260
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.71 E-value=0.18 Score=37.67 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=54.3
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+....+.|..+|...+...|+..++++|+. .+..+ .+..++.-++.+|...|+|.+++.++..=+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k----~~~~~--------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEK----ITDRE--------DRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhh----cCChH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999994 33321 23567777889999999999999988765543
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.67 E-value=0.11 Score=52.00 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=73.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHh-hcccC----CCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLR-DFNHV----NPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNK 260 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~-~~~~~----~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~ 260 (414)
+.-+.+.|-.+|+.|.|..++..|.+||+ .+..+ .|.. .......-...+.+|.+..|+..|+...|.+++.+
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~--~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~ 360 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAK--TFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQK 360 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCc--ceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHH
Confidence 44457899999999999999999999996 33222 1111 00111222345889999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHc
Q 015006 261 VLDANPAHVKGLYRRGMAYMAL 282 (414)
Q Consensus 261 al~~dp~~~ka~~r~g~a~~~l 282 (414)
+...-..|+.-|.|+|.|.+..
T Consensus 361 av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 361 AVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 262
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.65 E-value=0.059 Score=53.75 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=82.2
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h---
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A--- 264 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~--- 264 (414)
+.-+.+..|-.|+|..|.+.....--. ..+... ..-+-.....++|++..++.++.|.-++..|.+||+ .
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni~---~~~g~~---~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q 316 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNIH---KEAGGT---ITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ 316 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccc---cccCcc---ccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence 344456677778888777765432210 111110 000111234568999999999999999999999995 2
Q ss_pred -----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 265 -----NP---------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 265 -----dp---------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
.| .....+|+.|.++...|+.-.|.++|.+|......| +.++..|..+
T Consensus 317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEc 378 (696)
T KOG2471|consen 317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAEC 378 (696)
T ss_pred HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 11 346789999999999999999999999999998887 5566555554
No 263
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.37 E-value=0.076 Score=33.96 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
..|.++|.+-+..++|++|+.+|++||++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999873
No 264
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.01 E-value=0.75 Score=44.92 Aligned_cols=107 Identities=22% Similarity=0.205 Sum_probs=77.2
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
...+..+...|++++|.+.-..+++. ..++ .++ +=.-.++.+++..=++..++.++..|+++
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~-----~~D~-----------~L~--~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKR-----QWDP-----------RLC--RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-----ccCh-----------hHH--HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 34444555677888888888888872 1111 111 11223577888899999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
..++-+|+.+++.+.|.+|...|+.|++..|+. .-...+..+-.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~ 373 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQ 373 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHH
Confidence 999999999999999999999999999999874 344455544433
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.90 E-value=0.45 Score=47.91 Aligned_cols=123 Identities=12% Similarity=0.105 Sum_probs=83.8
Q ss_pred CCCCchhhhhHHHHHHHhhhc----ccc-----ccccHHHHHHHHHHHHhhcccCCCCCh------HHHHHH--hh--hh
Q 015006 174 WTGLSFDGIMDEAEKIRVTGN----RLF-----KEGKFELAKAKYEKVLRDFNHVNPQDD------EEGKVF--VG--KR 234 (414)
Q Consensus 174 ~~~~~~~e~~~~a~~~k~~Gn----~~f-----k~g~y~~A~~~Y~~al~~~~~~~p~~~------~e~~~~--~~--~~ 234 (414)
|.+-++..+++.|.+-.+.-. .+. ......+|...|++|++.-+..-..+. ...+.. ++ ..
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 456677788877665433222 111 123468889999998875432211110 000111 11 22
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
.-+...+|+|..++|+.++|++.+...++..|. +...++++-.+++.++.|.++...+.+-=
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345677999999999999999999999988774 67799999999999999999998888753
No 266
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=93.89 E-value=0.14 Score=32.67 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+.++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 457889999999999999999999999876
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=0.5 Score=43.34 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=81.9
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhC-
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV----LDAN- 265 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a----l~~d- 265 (414)
+++-.....-+.+.|+..|++++.++..-. .......++.-.+..+.+++.|.+|...+.+- +..+
T Consensus 115 eKAak~lenv~Pd~AlqlYqralavve~~d---------r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~ 185 (308)
T KOG1585|consen 115 EKAAKALENVKPDDALQLYQRALAVVEEDD---------RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA 185 (308)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhccc---------hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence 444455566678888888888888654221 12233567778888999999999988777653 2333
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015006 266 -PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFD 333 (414)
Q Consensus 266 -p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 333 (414)
+.--|++.-.-.+|+...+|..|...|+....+..-+..+ .-..+++.+..+.+.....++++.+
T Consensus 186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~se---d~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSE---DSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChH---HHHHHHHHHHHhccCCHHHHHHHHc
Confidence 3445566555566666779999999999988774332221 2233444455555554555555543
No 268
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.77 E-value=0.28 Score=50.15 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=80.4
Q ss_pred hhhcccc-ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 015006 191 VTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHV 269 (414)
Q Consensus 191 ~~Gn~~f-k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ 269 (414)
..+-.|+ -+|+..+|+.+|..|+-+... .+ .-.+++.+|..+.++|.-.+|--....|+.-.|.-.
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~---h~----------kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t 283 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSR---HN----------KDIALLSLATVLHRAGFSADAAVILHAALDDADFFT 283 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCc---cc----------ccchhhhHHHHHHHcccccchhheeehhccCCcccc
Confidence 3333333 578999999999999984322 11 134677899999999999988887888887777666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEP 304 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~ 304 (414)
.-+|-+|+++..++.|.-....|..|++.+|...+
T Consensus 284 ~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 284 SNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 67999999999999999999999999999997644
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.72 E-value=0.51 Score=45.24 Aligned_cols=107 Identities=17% Similarity=0.135 Sum_probs=75.6
Q ss_pred HHHHhhhccccccccHHHHHHHHHHHHhhcccCC------------CCChH-----HHHHHh------hhhhHHHHHHHH
Q 015006 187 EKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN------------PQDDE-----EGKVFV------GKRNLLHLNVAA 243 (414)
Q Consensus 187 ~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~------------p~~~~-----e~~~~~------~~~~~~~~N~a~ 243 (414)
++....+..+|.+|++.+|...+.+.|.-++.-. ..+.+ -.+++. +..+-++--.|.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHh
Confidence 3445566778899999999999999887443210 00000 001110 112334445788
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFE 293 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~ 293 (414)
|+...|-|++|.+.+.++|++++.+..|...++.++...+++.++++...
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 89999999999999999999999999999888888888888888887643
No 270
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.68 E-value=0.84 Score=51.42 Aligned_cols=62 Identities=11% Similarity=0.044 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.|+.+..+|.+.|++++|+..+....+.+ +.+...|..+..+|.+.|++++|+..|....+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 45556666666666666666666666554 334555555666666666666666666665543
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.45 E-value=1.6 Score=36.70 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=53.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANP----------------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp----------------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.|......++...++..+.+++.+-. ....++.+++.++...|++++|+..+++++.+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~ 91 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL 91 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 44455566788888888888886541 12667777888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 015006 299 DKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 299 ~P~n~~~~~~~l~~~~~~ 316 (414)
+|-+ ..+...+-.+...
T Consensus 92 dP~~-E~~~~~lm~~~~~ 108 (146)
T PF03704_consen 92 DPYD-EEAYRLLMRALAA 108 (146)
T ss_dssp STT--HHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHH
Confidence 9998 4565555555433
No 272
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.44 E-value=0.83 Score=40.32 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLD-ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~-~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.-.+.+|.+...+|++.+|..++.+++. +-..++..+.-+++|.+.++++-+|...+++..+-+|.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc
Confidence 3456789999999999999999999986 45677889999999999999999999999999998875
No 273
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.43 E-value=2 Score=42.87 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q 015006 242 AACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS---EPDATAALSKLKKQR 317 (414)
Q Consensus 242 a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n---~~~~~~~l~~~~~~~ 317 (414)
|.-.+-.|+|.+|..++.=..+++| ++.++.-+|.|++...+|++|...|.. +-|++ +..+++++..|++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh~ 543 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKHL 543 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHhh
Confidence 4446688999999999999999999 999999999999999999999998764 33322 134555555555444
No 274
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.35 E-value=1.6 Score=43.75 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=85.0
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+..-|.---.++++..|...|.+||. .+..+ .++++.-|-|-+|.++...|....++|+.+-|--
T Consensus 76 WikYaqwEesq~e~~RARSv~ERALd----vd~r~-----------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 76 WIKYAQWEESQKEIQRARSVFERALD----VDYRN-----------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh----ccccc-----------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 33444444567788899999999998 44444 7899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
-+.+|.--..--.+|+..-|.+.|++=++..|+.
T Consensus 141 dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 141 DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH
Confidence 8999988888888999999999999999999984
No 275
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.29 E-value=1.8 Score=40.38 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 015006 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAY 279 (414)
Q Consensus 200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~ 279 (414)
+++..|.-.|+..-. ..+.. ..+.+-.|.|++.+++|++|......+|.-+++.+.++-++-.+-
T Consensus 187 ek~qdAfyifeE~s~----k~~~T-----------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE----KTPPT-----------PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred hhhhhHHHHHHHHhc----ccCCC-----------hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 346666666666444 11111 346778999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHH-hhCCCC
Q 015006 280 MALGEFEEAQRDFEMMM-KVDKSS 302 (414)
Q Consensus 280 ~~l~~~~eA~~~~~~al-~l~P~n 302 (414)
..+|.-.++...+-.-| ..+|++
T Consensus 252 ~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHhCCChHHHHHHHHHHHhcCCcc
Confidence 99999877776655444 457776
No 276
>PLN03077 Protein ECB2; Provisional
Probab=93.27 E-value=1.4 Score=48.72 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=32.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
++...++.+.|...++++++++|+++-.|..++++|...|+|++|.+..+...
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~ 718 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 33445566666666666666666666666666666666666666666555443
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.21 E-value=3.3 Score=39.19 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=72.4
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVLDA----NP---A 267 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al~~----dp---~ 267 (414)
..++|++..|..+|.|+-.......|.. ....+..++|.|...++.+ +|..|+...++|+++ .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~-------~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~ 75 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDM-------AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL 75 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHH-------HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence 4578999999999999988654344433 2345778999999999999 999999999999887 21 1
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHH---HHHHHHHHhhCCCC
Q 015006 268 -------HVKGLYRRGMAYMALGEFEEA---QRDFEMMMKVDKSS 302 (414)
Q Consensus 268 -------~~ka~~r~g~a~~~l~~~~eA---~~~~~~al~l~P~n 302 (414)
..+.+.-++++|+..+.++.. ...++.+-.-.|+.
T Consensus 76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~ 120 (278)
T PF08631_consen 76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK 120 (278)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC
Confidence 256677789999998876543 33333333334553
No 278
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.10 E-value=0.5 Score=36.84 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=46.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 015006 245 LLKLGECRKSIEACNKVLDANPA---------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~---------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P 300 (414)
.++.++|..|++...+.+..-.. ..-|+.++|..+...|++++|+..++.|+++-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46889999999888887765321 256889999999999999999999999998843
No 279
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.07 E-value=1.5 Score=41.68 Aligned_cols=89 Identities=10% Similarity=0.035 Sum_probs=70.8
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVLDANPAHVKGLYRRGM 277 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al~~dp~~~ka~~r~g~ 277 (414)
.+..+.|-..|.+|+. ..... ..+|...|..-++ .++.+.|...++.+++.-|.+...+..-..
T Consensus 14 ~~g~~~aR~vF~~a~~----~~~~~-----------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 14 TEGIEAARKVFKRARK----DKRCT-----------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHC----CCCS------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hCChHHHHHHHHHHHc----CCCCC-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 3447888999999986 22222 4578778888666 567777999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 278 AYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 278 a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
-+..+++.+.|+..|++++..-|..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~ 103 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKE 103 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCch
Confidence 9999999999999999999987764
No 280
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.94 E-value=0.41 Score=47.81 Aligned_cols=117 Identities=18% Similarity=0.196 Sum_probs=68.7
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc--CC-----HHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL--GE-----CRKSIEAC 258 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl--~~-----~~~A~~~~ 258 (414)
.......|-.+|..|+|.+|+..|+.+|..+.-+.-.+.++..+++++...|..-+-.+.+.+ +. .+.....+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 334445789999999999999999999988766666666666666666555432222222221 21 12222233
Q ss_pred HHH-----HHhCCCcHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 259 NKV-----LDANPAHVKGLYRRG-MAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 259 ~~a-----l~~dp~~~ka~~r~g-~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+.| .++.|.+.---+|.| ...+++++|--|....++.|++.|..
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 333 234454433333444 34457899999999999999999986
No 281
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=1.6 Score=43.78 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
-|..+.-.+....++.+...|.+..-.||. ..|.+ .++-----.-+++++++.|...+.+-|+.
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG----~cPK~------------KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIG----KCPKD------------KLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhc----cCCch------------hHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444444444555666666666666666 23332 11111222346889999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
.|.|.-++...|..-..||+.+.|...|.-|+...
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999998763
No 282
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.70 E-value=0.71 Score=43.42 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=60.6
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 224 DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 224 ~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a 295 (414)
+.+.+.+..+...++.-.|..|+..|.+.+|++.|++++.++|-+...+.-+-+.++.+|+--.|+..|++.
T Consensus 268 edererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 268 EDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 345556666667778888999999999999999999999999999999999999999999977777776654
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.63 E-value=1 Score=43.77 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=72.9
Q ss_pred hhhccccccccHHHHHHHHHHHHh-hcccC-CCCCh-----------------HHHHHHhhhhhHHHHHHHHHHHHc---
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLR-DFNHV-NPQDD-----------------EEGKVFVGKRNLLHLNVAACLLKL--- 248 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~-~~~~~-~p~~~-----------------~e~~~~~~~~~~~~~N~a~~~~kl--- 248 (414)
+.++.++..|+...|+......+. .+... .+... ..........+.+++-+|.-...+
T Consensus 189 e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~ 268 (352)
T PF02259_consen 189 EYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSK 268 (352)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccc
Confidence 344455556666778877777666 22211 00000 001122334456777777777777
Q ss_pred ---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 015006 249 ---GECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-----------------EEAQRDFEMMMKVDKS 301 (414)
Q Consensus 249 ---~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~-----------------~eA~~~~~~al~l~P~ 301 (414)
+.++.++..+..|+.++|.+.+++++.|..+..+=+. ..|+..|-+|+.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 269 LSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred cccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 7888899999999999999999999999888765221 3478888888888776
No 284
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.63 E-value=0.7 Score=37.58 Aligned_cols=75 Identities=19% Similarity=0.166 Sum_probs=55.8
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
|-.+--....+...|+|.+++..-.+||.+|+..-.-++++.+ +.+.+-+|+|.++--+|..++|+..+..+-++
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGk----lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGK----LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHH----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccch----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4445555667778899999999999999998764433434433 44778899999999999999999999988653
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=3 Score=38.22 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=60.4
Q ss_pred hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 015006 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA----- 267 (414)
Q Consensus 193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----- 267 (414)
||-+--.++|..|-..|-+|..+.......+ ...++|.-.+.||-+. +..+|+.+..+++++--+
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skh---------Daat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKH---------DAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCch---------hHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHH
Confidence 3333344566666666666665432222211 1256777777777555 888888888888877432
Q ss_pred -cHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Q 015006 268 -HVKGLYRRGMAYMA-LGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 268 -~~ka~~r~g~a~~~-l~~~~eA~~~~~~al~l~P 300 (414)
-++-+.-+|..|-. +.++++|+..|++|-+--.
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 13334445555554 4788899999998877643
No 286
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.48 E-value=2.7 Score=47.51 Aligned_cols=61 Identities=10% Similarity=0.013 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDAN-PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d-p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
.|+.+..+|.+.+++++|+..+...++.. +.+...|..+..+|.+.|++++|+..|+....
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22444555555555555555555555555443
No 287
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=1.5 Score=45.45 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPA------HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~------~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.++.|-|.-++++++|..+++.|...|..-|. .+|....++.||..+.+++.|++.++.|=+.+|.+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~ 427 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS 427 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc
Confidence 56778999999999999999999999876553 48889999999999999999999999999999987
No 288
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.04 E-value=0.71 Score=35.96 Aligned_cols=64 Identities=13% Similarity=0.195 Sum_probs=47.3
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
..+.|+|..|+..+.+...+......... ......+.+|+|.++...|++++|+..++.|+.+-
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35679999999999888875432211110 11234568899999999999999999999998774
No 289
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.03 E-value=0.74 Score=49.66 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=75.3
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCC---------------hHHHHHHh--------hhhhHHHHHHHHH
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQD---------------DEEGKVFV--------GKRNLLHLNVAAC 244 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~---------------~~e~~~~~--------~~~~~~~~N~a~~ 244 (414)
.+......+.+.|++++|+..|.+.... .+.|+. -++...+. .....+++.+..+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~--g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS--GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 4555666777888888888888876541 112221 01111111 1112467778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Q 015006 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DKSS 302 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l--~P~n 302 (414)
|.|.|++++|...+++..+ .+...|..+..+|...|+.++|++.|++.++. .|+.
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 8889999999888887643 36778888999999999999999999998764 5653
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.80 E-value=1.4 Score=41.54 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=65.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 227 GKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 227 ~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
...+.+....++.-++..+.-.++++.++...++.+.++|-+-++|.++=.+|+..|+...|+..|.+.-++
T Consensus 145 R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 145 RRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345566778899999999999999999999999999999999999999999999999999999999887663
No 291
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.57 E-value=0.66 Score=45.51 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=76.3
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA---- 264 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~---- 264 (414)
+.+.|.-|..-|++..|+++|.++-.+|.. ....+..+.|+-.+-+-+++|.....+..+|...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~ 220 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTS------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDAN 220 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcc------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhh
Confidence 456777788899999999999998887643 2234668889999999999999999998888765
Q ss_pred C----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 265 N----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 265 d----p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
. .-.++...-.|.|++.+++|..|.+.|-.+.
T Consensus 221 ~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 221 ENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 1236677778999999999999998886653
No 292
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=91.34 E-value=0.26 Score=44.06 Aligned_cols=24 Identities=8% Similarity=-0.101 Sum_probs=22.3
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCC
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSP 25 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~ 25 (414)
+|.+|+.|++..|.|+|+-|||..
T Consensus 48 aL~G~~~Gd~~~v~l~peeAyGe~ 71 (196)
T PRK10737 48 ALEGHEVGDKFDVAVGANDAYGQY 71 (196)
T ss_pred HHcCCCCCCEEEEEEChHHhcCCC
Confidence 688999999999999999999974
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=5.5 Score=36.78 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=63.5
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+-..++.+-..++|++|..+..+|++..+.-... -..+..|--.++..-.+..|.++...+++|..+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrsl---------fhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSL---------FHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444445555556778888888888888644321110 1124456666666677788888888888887653
Q ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 266 -----PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 266 -----p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
|+.+-.-.-+|-=..+.-+.++|+..|++++.+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 333333333333344556778888888888776
No 294
>PRK10941 hypothetical protein; Provisional
Probab=90.79 E-value=1.6 Score=41.25 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=63.0
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+.+.-..+.+.++|..|+++-...+. +.|+++.+ +--+|.+|.+++.+..|+.+++.-++..|+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~----l~P~dp~e-----------~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ----FDPEDPYE-----------IRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH----hCCCCHHH-----------HHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 34445678899999999999999999 78888433 3449999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015006 269 VKGLYRRGMAY 279 (414)
Q Consensus 269 ~ka~~r~g~a~ 279 (414)
+.+-.-+.+..
T Consensus 249 p~a~~ik~ql~ 259 (269)
T PRK10941 249 PISEMIRAQIH 259 (269)
T ss_pred hhHHHHHHHHH
Confidence 88876665544
No 295
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=2.2 Score=37.93 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=72.0
Q ss_pred hccccccc---cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhh-hH-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 193 GNRLFKEG---KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKR-NL-----LHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 193 Gn~~fk~g---~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~-~~-----~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
|-.++... +...|...|.+++..+..-.|......+.|..-. .+ .-+-+|..+...+++++|+...+.+|.
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~ 117 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence 44455443 4558999999999876555554433333333322 22 345678888999999999999999985
Q ss_pred hCC-CcHHH--HHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 264 ANP-AHVKG--LYRRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 264 ~dp-~~~ka--~~r~g~a~~~l~~~~eA~~~~~~a 295 (414)
.-. ++.++ -.|+|.++..++.+++|+..+...
T Consensus 118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 533 35554 578999999999999999887654
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.55 E-value=2.2 Score=43.12 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS-SEPDATAALSKLKKQRQEV 320 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~-n~~~~~~~l~~~~~~~~~~ 320 (414)
+-+.+|+|.|..++|+.++|++.|+..++..|. +...++.+|-.+--.++.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y 311 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY 311 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence 456688999999999999999999999998886 3355776666554433333
No 297
>PLN03077 Protein ECB2; Provisional
Probab=90.55 E-value=3 Score=46.20 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=66.5
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCCh---------------HH-HHHHhhhh--------hHHHHHHHH
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDD---------------EE-GKVFVGKR--------NLLHLNVAA 243 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~---------------~e-~~~~~~~~--------~~~~~N~a~ 243 (414)
.+....+.+.+.|+..+|+..|++.... .+.|+.. ++ ...+..+. ...|..+..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 3555666788899999999999987651 1333320 01 01111111 124555666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
++.+.|++++|...+++. .+.| ++..|-.+-.++...++.+.|....+++++++|++ ......|..+
T Consensus 634 ~l~r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ 700 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNS-VGYYILLCNL 700 (857)
T ss_pred HHHhCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-cchHHHHHHH
Confidence 666666666666665543 2333 23444444445555666666666666667777765 3344444444
No 298
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.15 E-value=7.2 Score=37.71 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=85.8
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+..+...+..+.+.|.|..|.....++.......... ...+..-.|......|+..+|+......+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46667788888889999999999998888732111111 1335555677777788888888877766651
Q ss_pred --C--------------------------------CCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHH
Q 015006 265 --N--------------------------------PAHVKGLYRRGMAYMAL------GEFEEAQRDFEMMMKVDKSSEP 304 (414)
Q Consensus 265 --d--------------------------------p~~~ka~~r~g~a~~~l------~~~~eA~~~~~~al~l~P~n~~ 304 (414)
. ...+++++.+|.-...+ +.+++++..|..|++++|+. .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~ 292 (352)
T PF02259_consen 214 RLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW-E 292 (352)
T ss_pred HhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH-H
Confidence 0 11267888888888888 88999999999999999987 3
Q ss_pred HHHHHHHHHHHHH
Q 015006 305 DATAALSKLKKQR 317 (414)
Q Consensus 305 ~~~~~l~~~~~~~ 317 (414)
.+...+......+
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544433
No 299
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.11 E-value=6.1 Score=36.23 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=68.6
Q ss_pred cccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH-HHHH-HHHHHHHH-hC-CCcHHHH
Q 015006 197 FKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC-RKSI-EACNKVLD-AN-PAHVKGL 272 (414)
Q Consensus 197 fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~-~~A~-~~~~~al~-~d-p~~~ka~ 272 (414)
|-.|+|..|+....-||..=. ..|..- ...+-.+.+.-..+-|...++.|.- +-.. ..+..+.. .+ |+-+.|-
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f--~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAK 170 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGL-TMPDQF--RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAK 170 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCC-CCCccc--cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHH
Confidence 556899999999999988321 223220 0011122233445566666666652 2221 12222211 11 4545554
Q ss_pred HH--HHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 273 YR--RGMAYM---------ALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 273 ~r--~g~a~~---------~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
+. .|.++. ..++...|+..|++|+.++|. .-++..++++.++++.
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k--~GVK~~i~~l~~~lr~ 226 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK--CGVKKDIERLERRLKA 226 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC--CChHHHHHHHHHHHhh
Confidence 44 455552 346788999999999999987 4688888888877763
No 300
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.07 E-value=1.1 Score=28.26 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 015006 270 KGLYRRGMAYMALGEFEEAQRD--FEMMMKVDKSS 302 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~--~~~al~l~P~n 302 (414)
+.++-.|-.+...|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4566667777777777777777 33666666653
No 301
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.86 E-value=5.4 Score=45.22 Aligned_cols=66 Identities=15% Similarity=0.011 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.+|.-|+-.|.+-..+++|.+.++.-++--.+..+.|.+.|..++..++-++|...+.+||+--|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 467778888888999999999999888877778899999999999999999999999999999887
No 302
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.85 E-value=0.73 Score=38.35 Aligned_cols=40 Identities=20% Similarity=0.250 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRR 275 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~ 275 (414)
.+.+-+|..|+++++|..++.+++..|+.+|+|..|.--+
T Consensus 72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4566699999999999999999999999999998875433
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.82 E-value=0.66 Score=42.19 Aligned_cols=59 Identities=24% Similarity=0.319 Sum_probs=51.7
Q ss_pred cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
.+++.+++..|.+.|.+|+. +.|.. ..-++.++...-|.|+++.|...+.++|++||..
T Consensus 4 ~~~~~~D~~aaaely~qal~----lap~w-----------~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE----LAPEW-----------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh----cCchh-----------hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 45688999999999999999 55554 5678889999999999999999999999999865
No 304
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.61 E-value=10 Score=35.55 Aligned_cols=79 Identities=14% Similarity=0.196 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLD----AN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATA 308 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~----~d--p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~ 308 (414)
..+..-++...++.|+-+.|..+++.+-+ ++ ..+.-.+.+.+..|...++|-+|...|.+++..||.+ +.+..
T Consensus 212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~N 290 (366)
T KOG2796|consen 212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANN 290 (366)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc-hhhhc
Confidence 45677788888999999999988885532 22 2345667777788888889999999999999999987 44544
Q ss_pred HHHHHH
Q 015006 309 ALSKLK 314 (414)
Q Consensus 309 ~l~~~~ 314 (414)
..+.|.
T Consensus 291 nKALcl 296 (366)
T KOG2796|consen 291 NKALCL 296 (366)
T ss_pred hHHHHH
Confidence 444443
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=89.45 E-value=0.54 Score=27.08 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFE 293 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~ 293 (414)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355666677777777777666553
No 306
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.94 E-value=1.8 Score=43.15 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q 015006 234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-GLYRRGMAYMA-LGEFEEAQRDFEMMMKVDKSS-EPDATAAL 310 (414)
Q Consensus 234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k-a~~r~g~a~~~-l~~~~eA~~~~~~al~l~P~n-~~~~~~~l 310 (414)
.+++++..|-||+.+++|.+|+..+..+|-.-. ..| .+..+..-+-. ....++....+--++.+.|.. +..+...+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~-r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~l 241 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ-RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQL 241 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 467889999999999999999999998875321 111 22222222222 234566666677777778852 12222222
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhccC
Q 015006 311 S-KLKKQRQEVESKARKQFKGLFDK 334 (414)
Q Consensus 311 ~-~~~~~~~~~~~~~~~~~~~~~~~ 334 (414)
. +...++..-.+-....|..+|..
T Consensus 242 keky~ek~~kmq~gd~~~f~elF~~ 266 (404)
T PF10255_consen 242 KEKYGEKMEKMQRGDEEAFEELFSF 266 (404)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHh
Confidence 2 22222222222244566777754
No 307
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.77 E-value=7.3 Score=39.95 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.-.++..|..+...|+.++|+..+++++..... ..-++|.+|-+++.+++|++|...|.+.++.+.-
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W 337 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW 337 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence 446788999999999999999999999854432 3457899999999999999999999999987654
No 308
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=88.37 E-value=5.1 Score=44.39 Aligned_cols=107 Identities=14% Similarity=0.249 Sum_probs=72.3
Q ss_pred hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhC
Q 015006 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-------GECRKSIEACNKVLDAN 265 (414)
Q Consensus 193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-------~~~~~A~~~~~~al~~d 265 (414)
...+...+.|..|+..|++... ..|.-.|-. .+.+..|.+.+.. ..+.+|+.-+++. .--
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 548 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRE----SFPGRKEGY--------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGG 548 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhh----cCCCcccch--------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCC
Confidence 3455677788888888888777 344432221 2333444444322 2477777777663 344
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
|.-+--|.-+|.+|..+|+|++-+++|.-|++--|.+ +.+-.....+
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 595 (932)
T PRK13184 549 VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQH-PEISRLRDHL 595 (932)
T ss_pred CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCC-CccHHHHHHH
Confidence 6667788899999999999999999999999999988 4444333333
No 309
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.35 E-value=3.5 Score=37.49 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=55.5
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.|--++..|+......-+..|+..|.+|+..-.. |.... -...+.+-+|..+.++|++++|+..+.+++..
T Consensus 124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~--~~~~~-------~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF--PIEGM-------DEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC--CCCCc-------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4555666666555555677788888888773221 11110 11346677999999999999999999999876
Q ss_pred CCCcH-HHHHHHHHH
Q 015006 265 NPAHV-KGLYRRGMA 278 (414)
Q Consensus 265 dp~~~-ka~~r~g~a 278 (414)
...+. ..+..+|+-
T Consensus 195 ~~~s~~~~l~~~AR~ 209 (214)
T PF09986_consen 195 KKASKEPKLKDMARD 209 (214)
T ss_pred CCCCCcHHHHHHHHH
Confidence 54332 355565553
No 310
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.12 E-value=2.1 Score=28.31 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+.+|.+|..+|+++.|+..++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788888889999999888888884
No 311
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.89 E-value=4.4 Score=40.01 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=74.3
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h-----
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD---------A----- 264 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~---------~----- 264 (414)
...|.++...|..++... +|..--.--.....-+..++-+|.++..+|++..|...+++||- .
T Consensus 7 s~~Y~~~q~~F~~~v~~~---Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~ 83 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH---DPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS 83 (360)
T ss_pred CHHHHHHHHHHHHHHHcc---CHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 346778888888877621 11110000111223466788899999999999999999998871 1
Q ss_pred C------------CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 265 N------------PAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 265 d------------p~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
+ +.| -.|+||..+++.+.|-+.-|++.++-.+.+||.++
T Consensus 84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~D 137 (360)
T PF04910_consen 84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDED 137 (360)
T ss_pred ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCC
Confidence 1 122 68899999999999999999999999999999843
No 312
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.84 E-value=9.1 Score=39.51 Aligned_cols=110 Identities=20% Similarity=0.348 Sum_probs=60.6
Q ss_pred chHHHHHHhhhcCCCCeEEEEecCCCccccCCCCCCCCCCcceEEEEEEcccCCCCCCCCCchhhhhHHHHHHHhhhccc
Q 015006 117 VPEGFEMCVRLMLPGEIALVTCPPDYAYDKFLRPANVPEGAHIQWEIELLGFEKPKDWTGLSFDGIMDEAEKIRVTGNRL 196 (414)
Q Consensus 117 v~~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~ip~~~~l~~eieL~~~~~~~~~~~~~~~e~~~~a~~~k~~Gn~~ 196 (414)
.-..+..++..|-++....+.++.-| -.+..+..|...+..|..-
T Consensus 257 aq~~F~~av~~~d~n~v~~lL~ssPY-----------------------------------HvdsLLqva~~~r~qgD~e 301 (665)
T KOG2422|consen 257 AQRDFYLAVIVHDPNNVLILLISSPY-----------------------------------HVDSLLQVADIFRFQGDRE 301 (665)
T ss_pred HHHHHHHHHhhcCCcceeeeeccCCc-----------------------------------chhHHHHHHHHHHHhcchh
Confidence 55567777777777777666664322 1223455566666655555
Q ss_pred cccccHHHHHHHHHHHHhhcccCCCCC--------hHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 197 FKEGKFELAKAKYEKVLRDFNHVNPQD--------DEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 197 fk~g~y~~A~~~Y~~al~~~~~~~p~~--------~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
...+-.++|+-.+.+|+.-. ..|.. -.+...+. .+++.--...-+.|.|.-|.++|+-.|.++|.
T Consensus 302 ~aadLieR~Ly~~d~a~hp~--F~~~sg~cRL~y~~~eNR~Fy----L~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 302 MAADLIERGLYVFDRALHPN--FIPFSGNCRLPYIYPENRQFY----LALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred hHHHHHHHHHHHHHHHhccc--cccccccccCcccchhhHHHH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 55555555555555555311 11111 11112211 11122223334789999999999999999987
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.83 E-value=9.8 Score=32.78 Aligned_cols=82 Identities=16% Similarity=0.088 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
...+..+..+-++.++..++...+...--+.|.++..-.--|..++..|+|.+|+..|+.+..-.|.. +-++..+..|.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~~kALlA~CL 88 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hHHHHHHHHHH
Confidence 44566677777888888888888877777889999888889999999999999999999887777775 67777777776
Q ss_pred HHH
Q 015006 315 KQR 317 (414)
Q Consensus 315 ~~~ 317 (414)
..+
T Consensus 89 ~~~ 91 (160)
T PF09613_consen 89 YAL 91 (160)
T ss_pred HHc
Confidence 544
No 314
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.82 E-value=1.2 Score=33.40 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
.|..+..+|+.+=+.|+|.+|+.+|.+||.+|..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 5677778888899999999999999999997754
No 315
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=0.69 Score=40.26 Aligned_cols=25 Identities=4% Similarity=-0.170 Sum_probs=22.7
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCC
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPL 26 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~ 26 (414)
||.+|.+||+..|.|||+-|||..-
T Consensus 49 al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 49 ALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred HHhCCCCCceeEEEeCchHhcCCCC
Confidence 6789999999999999999999843
No 316
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.30 E-value=2.1 Score=31.87 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=30.5
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+.|..+-.++..+=+.|+|.+|+.+|++|+..|..
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999999999987654
No 317
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=3.8 Score=44.17 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=77.9
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHH-----Hc--CCHHHHH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL-----KL--GECRKSI 255 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~-----kl--~~~~~A~ 255 (414)
+.......+.|-.++..|+|.+|+++|..+|-.+.-+.-++.++..+.+++...+..-+....+ ++ .....++
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence 5556677788999999999999999999998765544445555555555554444222211111 12 2334442
Q ss_pred HH--HHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 256 EA--CNKVLDANPAH-VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 256 ~~--~~~al~~dp~~-~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+. |=.-+.+.|-+ .-|+.-.-.+++++++|..|.....+.|++-|..
T Consensus 1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~ 1117 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSP 1117 (1202)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCC
Confidence 21 11223555644 4555555678899999999999999999999975
No 318
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.76 E-value=2.3 Score=31.81 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
..|..+-.++..+=+.|+|.+|+.+|..|+.+|..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45777888888999999999999999999997643
No 319
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.63 E-value=9.5 Score=38.61 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=71.3
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD-A 264 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~-~ 264 (414)
+....-.|-....-+.|+.|...|..|++.... .++.+-+..|+|..|+..++-+. +.++++ +
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i 430 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKALDLI 430 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHHHHhc
Confidence 334445566666667788888888888883221 33567788999999999776443 333433 4
Q ss_pred CCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 265 NPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 265 dp~~----------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
.|.| ..++|-.|.-.+..+++.||...+.+.|++.
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 4543 5678888999999999999999999999885
No 320
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=86.62 E-value=1.7 Score=32.43 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.0
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+..|..+..+|...=..|+|.+|+.+|..||.+|..
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 456778888888899999999999999999997753
No 321
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=86.59 E-value=7.6 Score=38.26 Aligned_cols=74 Identities=18% Similarity=0.190 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 015006 234 RNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAAL 310 (414)
Q Consensus 234 ~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l 310 (414)
+..++.-.|...+. -+...|..++..++++.|+.+-+-.--+.+++..|+..++-..++.+-+.+|. +++....
T Consensus 229 rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH--P~ia~lY 302 (531)
T COG3898 229 RAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH--PDIALLY 302 (531)
T ss_pred HHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC--hHHHHHH
Confidence 34455444444433 35889999999999999999999999999999999999999999999999987 3444333
No 322
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=11 Score=39.13 Aligned_cols=103 Identities=22% Similarity=0.079 Sum_probs=74.4
Q ss_pred cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCcHHHHH
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK-SIEACNKVLDANPAHVKGLY 273 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~-A~~~~~~al~~dp~~~ka~~ 273 (414)
.+...+....|+.....++. .+|.+ ..++.|++.+....+..-. +...+..+....|.|...+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~----~~~~~-----------~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 140 (620)
T COG3914 76 LLAPLADSTLAFLAKRIPLS----VNPEN-----------CPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLG 140 (620)
T ss_pred hccccccchhHHHHHhhhHh----cCccc-----------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHh
Confidence 33444555555555555555 45554 7799999998887776555 55566668999999988777
Q ss_pred HH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 274 RR------GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 274 r~------g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
-+ |+.+..+++..+|..++.++..+.|.+ ..+...+...
T Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~-~~~~~~~~~~ 185 (620)
T COG3914 141 HLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY-PRVLGALMTA 185 (620)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh-hhhHhHHHHH
Confidence 77 888999999999999999999999998 4444343333
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.79 E-value=8.6 Score=29.69 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 206 KAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 206 ~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+....+++. .+|.+ ..+.+.+|.+++..|+|+.|+..+-.++..++.+
T Consensus 8 ~~al~~~~a----~~P~D-----------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALA----ANPDD-----------LDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHH----HSTT------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHH----cCCCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445566666 57777 5688889999999999999999999999999876
No 324
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=85.68 E-value=2.4 Score=40.41 Aligned_cols=78 Identities=13% Similarity=0.146 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYR-RGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r-~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
..++.-.++-..+.+.|.+.-..|.++|...|.|+.-|.. -+.-+...++++.|+..|.++|+++|++ +.++.+.-++
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~-p~iw~eyfr~ 185 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS-PRIWIEYFRM 185 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC-chHHHHHHHH
Confidence 3456656666677889999999999999999999988765 4556777899999999999999999998 5666555544
No 325
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=85.24 E-value=2.2 Score=31.76 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=30.2
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+..|..+..+|...=+.|+|.+|..+|..+|..|..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 346777777888888889999999999999998754
No 326
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=85.21 E-value=2.5 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.274 Sum_probs=29.7
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+..|..+...|...=+.|+|.+|+.+|..|+..|..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 446777777888888889999999999999987654
No 327
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=85.03 E-value=1.9 Score=27.48 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+|..+|-+-+-.++|.+|+.++.++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999874
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.00 E-value=8.5 Score=40.36 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=70.7
Q ss_pred hhhccccccc-----cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 015006 191 VTGNRLFKEG-----KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG---ECRKSIEACNKVL 262 (414)
Q Consensus 191 ~~Gn~~fk~g-----~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~---~~~~A~~~~~~al 262 (414)
..|..+++.. ++..|...|.+|.. ... ..+.+++|.||..-. ++..|..++..|.
T Consensus 293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~----~g~-------------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 293 GLGRLYLQGLGVEKIDYEKALKLYTKAAE----LGN-------------PDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHHHHHh----cCC-------------chHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 3555555532 77888888888887 333 337778999988766 6789999999886
Q ss_pred HhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCC
Q 015006 263 DANPAHVKGLYRRGMAYMAL----GEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l----~~~~eA~~~~~~al~l~P 300 (414)
.. .++.|+|++|.+|..= .+...|..+|++|.+..+
T Consensus 356 ~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 356 KA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred Hc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 55 6899999999998763 578999999999999873
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=84.09 E-value=10 Score=37.38 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=50.2
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccC----------CCCC--------hHHHHHHhhhhhHHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHV----------NPQD--------DEEGKVFVGKRNLLHLNVAACLLK 247 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~----------~p~~--------~~e~~~~~~~~~~~~~N~a~~~~k 247 (414)
+..+.+.+..+..+|++..|....++||-.+... .... ..++. -...+.........+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR----~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR----QFFLALFRYIQSLGR 115 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch----HHHHHHHHHHHHHHh
Confidence 4455666666667777777777777777554311 1100 01111 112345556677788
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 015006 248 LGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 248 l~~~~~A~~~~~~al~~dp~ 267 (414)
.|.|.-|++.|+-.+.+||.
T Consensus 116 RG~~rTAlE~~KlLlsLdp~ 135 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPD 135 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987
No 330
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=83.66 E-value=2.5 Score=31.45 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=31.4
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+..|..+..+|...=..|+|.+|+.+|.+|+..|..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 457888888999999999999999999999997643
No 331
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=83.10 E-value=2.9 Score=38.87 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANP------AHVKGLYRRGMAYMALGEFEEAQRDFE 293 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp------~~~ka~~r~g~a~~~l~~~~eA~~~~~ 293 (414)
..+...+|.-|+++|+|++|+..+..++..-. -....+.++..|...+|+.+..+...-
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44445555555666666666655555554321 113444555555555555555554433
No 332
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.85 E-value=5.9 Score=37.01 Aligned_cols=62 Identities=16% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 254 SIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 254 A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
|+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-.|-+++-..-.. +.++.+|..+-.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999775554 5677777776554
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.16 E-value=16 Score=38.76 Aligned_cols=127 Identities=19% Similarity=0.186 Sum_probs=90.1
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCC---CCCh--------HHHHHHhhhhhHHHHHHHHHHHHcCCHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVN---PQDD--------EEGKVFVGKRNLLHLNVAACLLKLGECRKS 254 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~---p~~~--------~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A 254 (414)
+-.+.--|-.....+....|.+.+.++++.+.... +... +.......+...++...+.|.+-+++|..|
T Consensus 301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a 380 (608)
T PF10345_consen 301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA 380 (608)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 44455557777777877799999999998776544 1111 112334456667888899999999999999
Q ss_pred HHHHHHHHHhC---C------CcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHhhCCCCHHHHHHHHHH
Q 015006 255 IEACNKVLDAN---P------AHVKGLYRRGMAYMALGEFEEAQRDFE--------MMMKVDKSSEPDATAALSK 312 (414)
Q Consensus 255 ~~~~~~al~~d---p------~~~ka~~r~g~a~~~l~~~~eA~~~~~--------~al~l~P~n~~~~~~~l~~ 312 (414)
......+.... | -.+..+|-.|..+...|+++.|+..|. .+....+.++-.+-..|..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl 455 (608)
T PF10345_consen 381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNL 455 (608)
T ss_pred HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHH
Confidence 98888776543 2 247889999999999999999999998 5555566553333333333
No 334
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.09 E-value=4.5 Score=34.16 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF 285 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~ 285 (414)
....+|...+..|+|.-|+..++.++..+|+|..|..-++.++..++.-
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 4455677777778888888888888888888777777777777776543
No 335
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.52 E-value=2.3 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACN 259 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~ 259 (414)
+++++|.++..+|++++|...+.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 67899999999999999998764
No 336
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.40 E-value=4.6 Score=30.11 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=30.2
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+.|..+..+|...=..|+|++|+.+|..||++|..
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 46777778888888999999999999999998765
No 337
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.96 E-value=38 Score=29.69 Aligned_cols=65 Identities=11% Similarity=0.164 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPA---HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
..++..+|.-|.+.|++..|++.|.++...... -...+++.-++.+..+++..+...+.+|-.+-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999998876532 36677888899999999999999999988763
No 338
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.82 E-value=2.6 Score=42.02 Aligned_cols=59 Identities=20% Similarity=0.445 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDA---------NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~---------dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
..-+..+|.-+|+|..|++..+-+ ++ -+.++..+|..|-||+.+++|.+|++.|...|-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778899999999887543 22 245688899999999999999999999998874
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.53 E-value=3.2 Score=27.45 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 239 LNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 239 ~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
+++|.+|+.+|+++.|....+.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 67999999999999999999999953
No 340
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=80.30 E-value=7.2 Score=28.89 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=30.2
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhccc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH 218 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~ 218 (414)
+..|..+...|..+=+.|+|.+|+.+|..|+..|..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777788888888899999999999999987654
No 341
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=80.22 E-value=9.6 Score=41.26 Aligned_cols=96 Identities=19% Similarity=0.197 Sum_probs=71.5
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka 271 (414)
.|-.+++.|++.+|.. .-+++.. ..+.+ -..+.-+-.||..++++++|...+++++..+|+ -+-
T Consensus 49 kaLsl~r~gk~~ea~~-~Le~~~~---~~~~D-----------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eel 112 (932)
T KOG2053|consen 49 KALSLFRLGKGDEALK-LLEALYG---LKGTD-----------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EEL 112 (932)
T ss_pred HHHHHHHhcCchhHHH-HHhhhcc---CCCCc-----------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHH
Confidence 3456778888888883 3334431 33333 123444778999999999999999999999998 899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 272 LYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 272 ~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
++.+-.||.+-+.|.+=.+.--+..+..|++.
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999876666666666777763
No 342
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=26 Score=33.96 Aligned_cols=120 Identities=15% Similarity=0.141 Sum_probs=84.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK--SIEACNKVLD 263 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~--A~~~~~~al~ 263 (414)
|.-=.+-|..+....+|..|..+|-.|.+-+..+...- +. ...+--+-.|-+.++..++ ++-....+++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v----~A-----~~sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDV----KA-----LTSLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcH----HH-----HHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 44445678888888999999999999998665443221 11 1222224566677777766 5556677889
Q ss_pred hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 015006 264 ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQ 318 (414)
Q Consensus 264 ~dp~~~ka~~r~g~a~~~--l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~ 318 (414)
++.....|+...|.|+.+ +.+|+.|+..|..=|..|| -++.++..+...+-
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~----ivr~Hl~~Lyd~lL 332 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP----IVRSHLQSLYDNLL 332 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh----HHHHHHHHHHHHHH
Confidence 888899999999999976 5689999999998887765 46666666554433
No 343
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=80.05 E-value=2 Score=31.23 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=29.3
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
+..|..+...|..+=+.|+|.+|+.+|.+|+..+.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34577777888888889999999999999998664
No 344
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=79.85 E-value=11 Score=37.18 Aligned_cols=66 Identities=17% Similarity=0.210 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLK---LGECRKSIEACNKVL-DANPAHVKGLYRRGMAYMAL---------GEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~k---l~~~~~A~~~~~~al-~~dp~~~ka~~r~g~a~~~l---------~~~~eA~~~~~~al~l~P~n 302 (414)
+..-.|.++.+ .|+.++|+..+..++ ...+.++..+.-.|.+|..+ ..+++|+.+|.++.+++|+.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 44556777777 999999999999955 45567888999999988653 34789999999999999764
No 345
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.84 E-value=28 Score=30.04 Aligned_cols=110 Identities=17% Similarity=0.157 Sum_probs=73.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN 265 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d 265 (414)
+..+.+........++...+...+.. +.. +.|.. ..+-.--|..++..++|.+|+..++.+.+-.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~A-Lrv---LRP~~-----------~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDA-LRV---LRPEF-----------PELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHH-HHH---hCCCc-----------hHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 44455555666666777777666543 333 55665 3455557888999999999999999998888
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
|..+-+---++.|+..+++.+= ...-..+++..++ +.+......+
T Consensus 75 ~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~d--~~a~~Lv~~L 119 (160)
T PF09613_consen 75 PGFPYAKALLALCLYALGDPSW-RRYADEVLESGAD--PDARALVRAL 119 (160)
T ss_pred CCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCCC--hHHHHHHHHH
Confidence 8877555566888888887531 1223446666654 4455555444
No 346
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=10 Score=35.96 Aligned_cols=54 Identities=19% Similarity=0.204 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
-+.-.+..+++.+|...+..++..+|.+..+..-++.|+...|+.+.|...|..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 455567789999999999999999999999999999999999999998876553
No 347
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.19 E-value=16 Score=36.05 Aligned_cols=103 Identities=15% Similarity=0.272 Sum_probs=74.0
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCc
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV---LDANPAH 268 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a---l~~dp~~ 268 (414)
.+..+|+.|+..++......+-+ ..|.. .++..|....--+.++.-++++ -.+.|+|
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK----~ePHP----------------~ia~lY~~ar~gdta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWK----AEPHP----------------DIALLYVRARSGDTALDRLKRAKKLESLKPNN 328 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHh----cCCCh----------------HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccc
Confidence 44566777777777777766666 44433 2566666665555555555544 4578999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
..+.+-++.+-+.-|+|..|...-+.+..+.|.. .+.-.|..+...
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeA 374 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEA 374 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhh
Confidence 9999999999999999999999999999999973 455566665543
No 348
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.05 E-value=21 Score=30.17 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=41.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQE 319 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~ 319 (414)
.-+.....+++..+..|+|.-|...+..++..+|+| ..++..+..+-..+..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n-~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDN-EEARQLKADALEQLGY 119 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHH
Confidence 567788889999999999999999999999999998 6788777776665543
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=78.84 E-value=5.9 Score=44.58 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+.+++..+..+.+.+++++|+..-.+|..+.......+. .-....|.|++...+..++-..|+..+.+++.+
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds-------~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS-------PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC-------HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 3667788888889999999999999888876555444442 223568899999999999999999999988866
Q ss_pred C--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 265 N--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 265 d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
. |.-+-..-+.+..+..+++++.|+..++.|+++
T Consensus 1045 ~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1045 KLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4 444555677888888999999999999999986
No 350
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=78.82 E-value=21 Score=33.80 Aligned_cols=66 Identities=8% Similarity=-0.011 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL-GEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l-~~~~eA~~~~~~al~l~P~n~ 303 (414)
|........+.+..+.|...+.+|++..+.+...|.+.|..-+.. ++.+-|...|+.+++..|.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~ 70 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence 444445555666689999999999977677788888888886664 566669999999999988873
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=78.80 E-value=6.1 Score=24.81 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCc
Q 015006 238 HLNVAACLLKLGECRKSIEA--CNKVLDANPAH 268 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~--~~~al~~dp~~ 268 (414)
+.-+|.++..+|+|++|+.. +.-+..+++.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 34578999999999999999 44888888764
No 352
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=77.52 E-value=28 Score=36.21 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=57.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM-MMKVDKSSEPDATAAL 310 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~-al~l~P~n~~~~~~~l 310 (414)
++..+..++....+......++..+|+++.++-++|.+....|....|...+.. |....|.| ......+
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~ 142 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDN-AEFLGHL 142 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcch-HHHHhhH
Confidence 677777888998999999999999999999999999999999887777766665 89999987 4444444
No 353
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.39 E-value=14 Score=27.47 Aligned_cols=17 Identities=18% Similarity=0.120 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhCCCC
Q 015006 286 EEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 286 ~eA~~~~~~al~l~P~n 302 (414)
.+|++.|.+++...|++
T Consensus 30 ~~aIe~L~q~~~~~pD~ 46 (75)
T cd02682 30 KKAIEVLSQIVKNYPDS 46 (75)
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 34445555666667876
No 354
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.00 E-value=9 Score=35.77 Aligned_cols=62 Identities=13% Similarity=0.056 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 015006 205 AKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMA 281 (414)
Q Consensus 205 A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~ 281 (414)
|..+|.+|+. +.|.+ ...|+.+|..+...++.-.|+-+|-+++-.....+.|.-++...+.+
T Consensus 1 A~~~Y~~A~~----l~P~~-----------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIR----LLPSN-----------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHH----H-TTB-----------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----hCCCC-----------CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999 56666 67999999999999999999999999998776677788887777777
No 355
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.78 E-value=32 Score=34.21 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=46.2
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL--KLGECRKSIEACNKVL 262 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~--kl~~~~~A~~~~~~al 262 (414)
.+.....++..+|+.++|..|...+...+.- .|.... ...+.+++.+|. -.-+|.+|...++..+
T Consensus 130 ~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r----l~~~~~---------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 130 FGDREWRRAKELFNRYDYGAAARILEELLRR----LPGREE---------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCchhh---------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3566677888999999999999999998872 222211 345555665554 4567888888887766
Q ss_pred H
Q 015006 263 D 263 (414)
Q Consensus 263 ~ 263 (414)
.
T Consensus 197 ~ 197 (379)
T PF09670_consen 197 K 197 (379)
T ss_pred H
Confidence 4
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.65 E-value=26 Score=32.50 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 271 GLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
..+.+|.-|+.+|+|+.|+..|+.++..
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3467899999999999999999999765
No 357
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=76.52 E-value=21 Score=40.78 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=75.8
Q ss_pred hhhhhHHHHH---HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006 179 FDGIMDEAEK---IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 255 (414)
Q Consensus 179 ~~e~~~~a~~---~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~ 255 (414)
++...+.+.. +......|-+-++|.+|.+.|+.-++.+.. ...+|.-.|..+++.++-+.|.
T Consensus 1520 FeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q---------------~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1520 FERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ---------------TRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc---------------hhhHHHHHHHHHhcccHHHHHH
Confidence 4455555442 334455667778889999999888885541 1346666777777777777777
Q ss_pred HHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 256 EACNKVLDANPA--HVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 256 ~~~~~al~~dp~--~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
....+||..-|. ++...-.-|+.-++.|+-+.++..|+-.|.-.|.-
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc
Confidence 777777777776 67777777777777777777777777777777653
No 358
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.80 E-value=9.4 Score=35.27 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhccc-CCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 015006 202 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 262 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~-~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al 262 (414)
-..|...|++|+..... +.|.+ +++..+.+|.+..|+. +++..+|+..+.+|+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~--------p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTH--------PLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTS--------HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCC--------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 46789999999998776 55554 5678889999988765 799999999988874
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.58 E-value=31 Score=31.48 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDAT 307 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~ 307 (414)
.+++.+...+|+..+..-++-+|.+.-...-+-+.+.-.|+|+.|..-++-+-.++|+....+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ 73 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGAS 73 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHH
Confidence 4577888999999999999999999988888889999999999999999999999998754433
No 360
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.08 E-value=11 Score=42.47 Aligned_cols=107 Identities=18% Similarity=0.151 Sum_probs=83.7
Q ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 184 DEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 184 ~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
..+....+.|......+.+.+|.+ -.+++.++.... -+++.-...+|.-+|..+.+++++.+|+..+.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~-------~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVM-------GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhh-------hhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 356777788888888899998888 666666443221 123444578999999999999999999999988864
Q ss_pred hC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 264 AN--------PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 264 ~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+. |+...++-+++...+...+...|+..+.+|+.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence 43 456788889998888889999999999999887
No 361
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=74.81 E-value=11 Score=38.60 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 249 GECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL---GEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 249 ~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l---~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
..+..|+.++.+++..-|...-.|.++|.++++. |+.-.|+.++-.|++++|.. ..++..|..+...+....
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~-~kah~~la~aL~el~r~~ 462 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSI-QKAHFRLARALNELTRYL 462 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHH-HHHHHHHHHHHHHHhhHH
Confidence 4578899999999999999999999999999985 57788999999999999986 566666666655554443
No 362
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.79 E-value=67 Score=30.14 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 015006 203 ELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLK----LGECRKSIEACNKVLDANPAHVKGLYRRGMA 278 (414)
Q Consensus 203 ~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~k----l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a 278 (414)
..|...|.+|.... ...+..+++.+|.+ ..++.+|..++.+|-+... ..++|+.+ .
T Consensus 172 ~~A~~~~~~aa~~~-----------------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~ 231 (292)
T COG0790 172 KKALYLYRKAAELG-----------------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-L 231 (292)
T ss_pred HhHHHHHHHHHHhc-----------------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-H
Confidence 35666666666521 25678889988876 3489999999999988865 89999999 6
Q ss_pred HHHcC---------------CHHHHHHHHHHHHhhCCCC
Q 015006 279 YMALG---------------EFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 279 ~~~l~---------------~~~eA~~~~~~al~l~P~n 302 (414)
+...| +...|...+.++....+..
T Consensus 232 ~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 232 MYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 66555 7788888888888776653
No 363
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=72.79 E-value=46 Score=32.93 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDA----NPAHVKGLYRRGMAYMA---LGEFEEAQRDFEMMMKVDKSSEPDAT 307 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~----dp~~~ka~~r~g~a~~~---l~~~~eA~~~~~~al~l~P~n~~~~~ 307 (414)
..+..|+=.+|...++|+.-+...+..=.+ -++.....+..|.|+.. .|+.++|+..+..++..+..+.++..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 446668888999999999999888776555 34556667778888888 99999999999997776655557888
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHhhccCCC
Q 015006 308 AALSKLKKQRQE--------VESKARKQFKGLFDKKP 336 (414)
Q Consensus 308 ~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 336 (414)
-.+.++.+.+-. ...+.-..|++-|...+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 888887766543 23444566777776553
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=72.74 E-value=50 Score=31.03 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=63.7
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCcHHH
Q 015006 199 EGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----G--ECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 199 ~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-----~--~~~~A~~~~~~al~~dp~~~ka 271 (414)
..++.+|...|.+|.. ...... ..+..+++.+|..- - +...|+..+.++-... ++.+
T Consensus 126 ~~d~~~A~~~~~~Aa~----~g~~~a----------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a 189 (292)
T COG0790 126 PLDLVKALKYYEKAAK----LGNVEA----------ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDA 189 (292)
T ss_pred ccCHHHHHHHHHHHHH----cCChhH----------HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHH
Confidence 4489999999999988 211110 23466777777664 1 2347888888887764 8999
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 015006 272 LYRRGMAYMA----LGEFEEAQRDFEMMMKVDK 300 (414)
Q Consensus 272 ~~r~g~a~~~----l~~~~eA~~~~~~al~l~P 300 (414)
.+++|.+|.. ..++.+|..+|.+|.+...
T Consensus 190 ~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 190 QLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999988865 3589999999999999875
No 365
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=72.14 E-value=54 Score=27.56 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 237 LHLNVAACLLKLGECRKSIEAC-NKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~-~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
=|.++|.-++-...-.+.++.. ...+.-+..++..++.+|.||.++|+..+|-+.+.+|.+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4666776666444444444433 3334344568999999999999999999999999988865
No 366
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.95 E-value=8.3 Score=42.47 Aligned_cols=100 Identities=27% Similarity=0.382 Sum_probs=68.5
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA 267 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~ 267 (414)
....-|+.+|..|.|+.|.-+|...- -+..+|..+..+|+|..|...+.+| +
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vS-----------------------N~a~La~TLV~LgeyQ~AVD~aRKA-----n 1247 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVS-----------------------NFAKLASTLVYLGEYQGAVDAARKA-----N 1247 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHHHHHhhhc-----c
Confidence 45677888888888888887775533 3456888899999999999999998 5
Q ss_pred cHHHH------------HHHHHH------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 268 HVKGL------------YRRGMA------------------YMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 268 ~~ka~------------~r~g~a------------------~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
+.|.| ||+|+. |...|-|++-+..++.+|-++-.+. ..-.+|..+..+
T Consensus 1248 s~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM-gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1248 STKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM-GMFTELAILYSK 1325 (1666)
T ss_pred chhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH-HHHHHHHHHHHh
Confidence 54444 344332 3445777888888888887765542 233445544433
No 367
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=71.84 E-value=29 Score=34.65 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=53.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--------CC-----c---H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 242 AACLLKLGECRKSIEACNKVLDAN--------PA-----H---V--KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 242 a~~~~kl~~~~~A~~~~~~al~~d--------p~-----~---~--ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
|..++++++|..|+--|..||++- |. + + -.--.+..||+.+++-+.|+...-+.+.++|.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~- 261 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY- 261 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch-
Confidence 444556666666655555555543 11 1 1 112346889999999999999999999999986
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015006 304 PDATAALSKLKKQRQEVESKARK 326 (414)
Q Consensus 304 ~~~~~~l~~~~~~~~~~~~~~~~ 326 (414)
..-+...+.|-+.+..+.+..+.
T Consensus 262 frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556666666655444
No 368
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.62 E-value=60 Score=27.71 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQ 316 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~ 316 (414)
.+.+...+.+...+..++.......--+.|+++..-.--|..++..|+|.+|+..|+...+-.+.. +-.+..+..|...
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kAL~A~CL~a 90 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP-PYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc-hHHHHHHHHHHHh
Confidence 344444555556666666666655555667777777777777777777777777777766665553 4555555555443
Q ss_pred H
Q 015006 317 R 317 (414)
Q Consensus 317 ~ 317 (414)
+
T Consensus 91 l 91 (153)
T TIGR02561 91 K 91 (153)
T ss_pred c
Confidence 3
No 369
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.19 E-value=32 Score=36.10 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHH
Q 015006 237 LHLNVAACLLKLG-----ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG---EFEEAQRDFEMMMKVDKSSEPDATA 308 (414)
Q Consensus 237 ~~~N~a~~~~kl~-----~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~---~~~eA~~~~~~al~l~P~n~~~~~~ 308 (414)
+.+.+|.||++-. ++..|+..+.++-.+ .++.|.|++|.++..-. ++..|...|..|.+.-. ..+..
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~ 364 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIY 364 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHH
Confidence 4567888887743 567788888777665 56788888888888765 56788888888776643 24555
Q ss_pred HHHHHHH
Q 015006 309 ALSKLKK 315 (414)
Q Consensus 309 ~l~~~~~ 315 (414)
.+..|..
T Consensus 365 ~la~~y~ 371 (552)
T KOG1550|consen 365 RLALCYE 371 (552)
T ss_pred HHHHHHH
Confidence 6666654
No 370
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.16 E-value=67 Score=33.46 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=76.6
Q ss_pred Hhhhcccccc---ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 015006 190 RVTGNRLFKE---GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-- 264 (414)
Q Consensus 190 k~~Gn~~fk~---g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-- 264 (414)
.+.|+.+|+- ..|++|...|.-|....+ |.+--..-+-.+.-+..++-+|..+...|+.+-|.....++|=.
T Consensus 239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d---~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d 315 (665)
T KOG2422|consen 239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHD---PNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFD 315 (665)
T ss_pred ccCceeEEEeecchHHHHHHHHHHHHHhhcC---CcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 5778888854 469999999988887432 22100000011223456677888888899987777766666511
Q ss_pred -------------------CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 265 -------------------NPAH---VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 265 -------------------dp~~---~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.|.| -.++||.=+.+.+.|-+.-|.++++-.+.++|.
T Consensus 316 ~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~ 374 (665)
T KOG2422|consen 316 RALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPS 374 (665)
T ss_pred HHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 1333 678888889999999999999999999999998
No 371
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.13 E-value=48 Score=33.79 Aligned_cols=100 Identities=18% Similarity=0.099 Sum_probs=77.8
Q ss_pred HHHHHHhhhcccc-ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG-ECRKSIEACNKVL 262 (414)
Q Consensus 185 ~a~~~k~~Gn~~f-k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~-~~~~A~~~~~~al 262 (414)
.|....+.|..+| -..+++.|....++|..+...+ |.. .+.+...++-+|.||.... .+..|.....+|+
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~i-p~f-------ydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai 116 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSI-PSF-------YDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI 116 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccc-ccH-------HhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 3555556666655 5678999999999999866543 322 2345667788999999988 8999999999999
Q ss_pred HhCCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Q 015006 263 DANPAH----VKGLYRRGMAYMALGEFEEAQRDF 292 (414)
Q Consensus 263 ~~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~ 292 (414)
++...+ -|-++.+++.+.-..+|..|++.+
T Consensus 117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence 997654 577889999999999999998764
No 372
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.04 E-value=44 Score=25.18 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=41.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKGL---YRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~---~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
.+.=++...+..+|+....+||+..++....+ =.+.+||+..|+|.++++.-.+=+
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445677889999999999999887765433 345788999999999887654433
No 373
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=69.56 E-value=58 Score=26.25 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCC
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHV---KGLYRRGMAYMALGE-----------FEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~---ka~~r~g~a~~~l~~-----------~~eA~~~~~~al~l~P~n 302 (414)
+|.-++..|++-+|+...+..+...+++. -.++..|..+..+.. +-.|++.|.++..+.|..
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~ 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH
Confidence 57778899999999999999998887665 445666777766532 456889999999999974
No 374
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=69.45 E-value=52 Score=32.67 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=42.6
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHH--HcCCHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLL--KLGECRKSIEACN 259 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~--kl~~~~~A~~~~~ 259 (414)
.......+..+|++++|..|...|..++.- .+.. +. .-...++-+++.||. ..-+|++|...++
T Consensus 130 ~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r----~l~~-~~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 130 GNTEQGYARRAINAFDYLFAHARLETLLRR----LLSA-VN-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc----ccCh-hh-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344445677899999999999999999973 2221 11 122445666666665 4556777887777
No 375
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=69.25 E-value=29 Score=26.08 Aligned_cols=35 Identities=29% Similarity=0.198 Sum_probs=30.3
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
.+.|-...+.|-.+=..|+.+.|+..|++++..+.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 45678888888888888999999999999998764
No 376
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=66.61 E-value=16 Score=38.70 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=21.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
|++.+.+=.+|..+...|.-++|++.|.+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 67777777778888888888888777644
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.57 E-value=23 Score=35.21 Aligned_cols=67 Identities=13% Similarity=0.044 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLD--ANP--AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~--~dp--~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.+.+-+-.+|+.-+.|+.|-....++-- -.. .++.-+|..|.+.+-..+|..|.++|-.|+...|.+
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 3444556778888889998887777641 112 346678889999999999999999999999999975
No 378
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.47 E-value=19 Score=33.86 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=44.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 246 LKLGECRKSIEACNKVLDANPAH----VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 246 ~kl~~~~~A~~~~~~al~~dp~~----~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
++..+.++|+..+.++|++.+.. .||+-.+-.+++.+++|++-...|.+.|.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45668999999999999999864 68898999999999999998888877664
No 379
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=64.99 E-value=20 Score=33.71 Aligned_cols=70 Identities=23% Similarity=0.267 Sum_probs=56.1
Q ss_pred ccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 015006 194 NRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLY 273 (414)
Q Consensus 194 n~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~ 273 (414)
+.+...+++..|...-.+.+. ++|.++.+ .--+|.+|.+++.+.-|+++....++.-|+.+-+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~----l~P~dp~e-----------irDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLD----LNPEDPYE-----------IRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHh----hCCCChhh-----------ccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 456677889999988888888 67776432 234899999999999999999999999999888766
Q ss_pred HHHHH
Q 015006 274 RRGMA 278 (414)
Q Consensus 274 r~g~a 278 (414)
-+++.
T Consensus 254 ir~~l 258 (269)
T COG2912 254 IRAQL 258 (269)
T ss_pred HHHHH
Confidence 65544
No 380
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=64.94 E-value=10 Score=37.99 Aligned_cols=41 Identities=20% Similarity=0.066 Sum_probs=31.8
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI 46 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~ 46 (414)
||.+|++|++..|.++.-..|+... -+|.++.|+|++.++.
T Consensus 190 ~L~G~k~Gd~~~~~v~~p~~~~~~~----~~gk~~~f~v~i~~I~ 230 (408)
T TIGR00115 190 QLVGMKAGEEKEIKVTFPEDYHAEE----LAGKEATFKVTVKEVK 230 (408)
T ss_pred HhCCCCCCCeeEEEecCccccCccc----CCCCeEEEEEEEEEec
Confidence 6889999999999998655565322 2568999999998864
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=63.95 E-value=67 Score=31.23 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDA--NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~--dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
+-+|+|.+..+..-...++...+-.+.- -..+--.+--+|-.+..+|+.++|...|++|+.+.++.
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 4579999988877777777766655433 12445566778999999999999999999999999874
No 382
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.30 E-value=29 Score=30.65 Aligned_cols=51 Identities=22% Similarity=0.238 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
-...++.+.+.+...| ++..+.+.+.++..+|+.++|.....++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455667777888887 78999999999999999999999999999999954
No 383
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=61.94 E-value=36 Score=32.59 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.9
Q ss_pred hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006 182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
-+.+|..+...+...=+.++|.+|..+|..|++||-
T Consensus 6 ~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 6 FLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred HHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 566777888888888899999999999999999874
No 384
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=60.88 E-value=59 Score=34.39 Aligned_cols=115 Identities=16% Similarity=0.129 Sum_probs=68.9
Q ss_pred hhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChH----------HHHHH---------------------
Q 015006 182 IMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDE----------EGKVF--------------------- 230 (414)
Q Consensus 182 ~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~----------e~~~~--------------------- 230 (414)
.-+.|..+.+-|..-++..+++.|.++..+|... |..++ .....
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-----P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-----PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-----CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 3345777778887778888999999999888762 22211 11100
Q ss_pred --------hhhh---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-Cc----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 231 --------VGKR---NLLHLNVAACLLKLGECRKSIEACNKVLDANP-AH----VKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 231 --------~~~~---~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-~~----~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
.+++ ...-.|.|+-+-...-|.++.+.+++.+.+-+ .+ +..|+-+....+.--..+.|+..|++
T Consensus 496 tk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 0111 11334444444444456666666666655542 22 34455566666666678889999999
Q ss_pred HHhhCCC
Q 015006 295 MMKVDKS 301 (414)
Q Consensus 295 al~l~P~ 301 (414)
||+..|.
T Consensus 576 aL~~Cpp 582 (835)
T KOG2047|consen 576 ALDGCPP 582 (835)
T ss_pred HHhcCCH
Confidence 9998885
No 385
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.55 E-value=46 Score=29.33 Aligned_cols=97 Identities=20% Similarity=0.208 Sum_probs=66.6
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA--NP 266 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~--dp 266 (414)
....|..+..+|+-..|+..|..+-. ..+.. ...+-.+.+..|..+...+.|+....-.+. |.- +|
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~----dt~~P-------~~~rd~ARlraa~lLvD~gsy~dV~srvep-La~d~n~ 164 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAA----DTSIP-------QIGRDLARLRAAYLLVDNGSYDDVSSRVEP-LAGDGNP 164 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhc----cCCCc-------chhhHHHHHHHHHHHhccccHHHHHHHhhh-ccCCCCh
Confidence 34556667788999999999998876 23222 112233455566677788889887655543 333 34
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
-..-|.--+|.+-.+.|+|..|...|.....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4455556678888999999999999998876
No 386
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.14 E-value=41 Score=33.77 Aligned_cols=112 Identities=14% Similarity=0.172 Sum_probs=70.9
Q ss_pred hHHHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH---HHH---HH
Q 015006 183 MDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC---RKS---IE 256 (414)
Q Consensus 183 ~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~---~~A---~~ 256 (414)
+-.+.-+.+.|..+++...|.+|+.+.-.|-++|..+.+.-- ..-+-.+.+-+.+-.||+.+++. ..| +.
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klL----e~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ 235 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLL----ELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLV 235 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHH----HhhcchhhhhcchhheehhhcccccCChHHHHHH
Confidence 335778889999999999999999998888877654443210 00111223344556888888762 222 22
Q ss_pred HHHHHHHh------------C-CCc-HHHHHHH-----HHHHHHcCCHHHHHHHHHHHHhh
Q 015006 257 ACNKVLDA------------N-PAH-VKGLYRR-----GMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 257 ~~~~al~~------------d-p~~-~ka~~r~-----g~a~~~l~~~~eA~~~~~~al~l 298 (414)
-|.+.+.. . +.. -+|+|-| |...++.|+-++|.++|+.|...
T Consensus 236 ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 236 RARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred HHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 33333321 1 122 3455443 88899999999999999988653
No 387
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=58.87 E-value=46 Score=31.22 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=69.1
Q ss_pred hccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---c-
Q 015006 193 GNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPA---H- 268 (414)
Q Consensus 193 Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~---~- 268 (414)
|..++..++.-.|+..|...+. -.|.+-..-..-....-.+|.....|+.- -....|.+.++.||-.... .
T Consensus 2 ~~~L~D~~e~L~~L~~~~~~~~----~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~-~~~~n~~e~~d~ALm~Ae~r~D~~ 76 (368)
T COG5091 2 YKALYDEKEPLKALHLYDEILK----GSPTNLTALIFKAACLEKLYFGFSDWHSD-ATMENAKELLDKALMTAEGRGDRS 76 (368)
T ss_pred ccchhcccchHHHhhhhhhhhc----cCCcceeEEeehhhhHHHHHhhhhhhhcc-cChhhHHHHHHHHHHhhhccCCcc
Confidence 3445555666667777766665 23332000000000011234444444432 2346788888888765421 1
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015006 269 --VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESK 323 (414)
Q Consensus 269 --~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~ 323 (414)
--+-+|++.+++.+.+|+.|..+|.+|+++--++ .+-..-.++...+...+++
T Consensus 77 ~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d--~L~~We~rLet~L~~~~kk 131 (368)
T COG5091 77 KIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD--TLPLWEDRLETKLNKKNKK 131 (368)
T ss_pred eeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc--cchHHHHHHHHHHhHhhHh
Confidence 2356899999999999999999999999985443 2222333444444444433
No 388
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=58.12 E-value=33 Score=34.86 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=40.9
Q ss_pred cHHHHHHH--HHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHH
Q 015006 201 KFELAKAK--YEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDAN--------PAHVK 270 (414)
Q Consensus 201 ~y~~A~~~--Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~d--------p~~~k 270 (414)
+|+.|+++ +..|+++...+. + ...|-.+|...+..|+++-|..++.++=..+ -.+..
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~-----------~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--D-----------PEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--T-----------HHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--c-----------HHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHH
Confidence 45555554 555666543332 2 2366667778888888888877776652111 23445
Q ss_pred HHHHHHHHHHHcCCHHHH
Q 015006 271 GLYRRGMAYMALGEFEEA 288 (414)
Q Consensus 271 a~~r~g~a~~~l~~~~eA 288 (414)
.+-.++......|++.-|
T Consensus 391 ~L~kl~~~a~~~~~~n~a 408 (443)
T PF04053_consen 391 KLSKLAKIAEERGDINIA 408 (443)
T ss_dssp HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHccCHHHH
Confidence 555555555555555444
No 389
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=58.11 E-value=2.5e+02 Score=31.02 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=39.5
Q ss_pred ccccHHHHH------HHHHHHHhhcccCCCCChHHHH-H---------HhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 198 KEGKFELAK------AKYEKVLRDFNHVNPQDDEEGK-V---------FVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 198 k~g~y~~A~------~~Y~~al~~~~~~~p~~~~e~~-~---------~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
...+|++|+ +.|..||.++...+-.-.++.. . -...+..++--+|.|.+++|.|..|-+-|.+|
T Consensus 1092 ~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 445666665 5577788776443211111110 0 01234567788999999999999998887765
No 390
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=57.91 E-value=2.8e+02 Score=30.59 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=71.5
Q ss_pred HhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 015006 190 RVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH- 268 (414)
Q Consensus 190 k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~- 268 (414)
...+-.+....+|.+|-..-.++...+.. |...- ...+.+...--+|.+.+..++++.|+..+..++..-|.+
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~--~~~~~----~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~ 492 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKA--PMHSR----QGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA 492 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCc--Ccccc----hhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 34444455556677776666665554321 11100 112223344446777788999999999999999887754
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 269 ----VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 269 ----~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
+-++...|.+++-.|++++|+.....+.++.
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999988873
No 391
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.41 E-value=91 Score=28.01 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPA----HVKGLYRRGMAYMALGEFEEAQ 289 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~----~~ka~~r~g~a~~~l~~~~eA~ 289 (414)
.+.+-+|.-|. ..+..+|+..+.++|++.+. |+..+.-++.++..+++++.|-
T Consensus 142 elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 142 ELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34555555554 46678888888888876532 5778888888888888888774
No 392
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.95 E-value=1.5e+02 Score=28.52 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHH
Q 015006 202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGL---YRRGMA 278 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~---~r~g~a 278 (414)
.+..+..|.+||+ .+|.+ ..++.-+-.+..+..+-+....-.++++..+|.+..-| ..--+.
T Consensus 47 ~E~klsilerAL~----~np~~-----------~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 47 AERKLSILERALK----HNPDS-----------ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHH----hCCCC-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4566788999999 46655 33444444455677788888899999999999875544 333344
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q 015006 279 YMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~al~l 298 (414)
.+..-.+...+..|.++|..
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HhccCcHHHHHHHHHHHHHH
Confidence 44445678888888888865
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.84 E-value=2.7e+02 Score=29.58 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=75.6
Q ss_pred HHHHHHhhhcccc-ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLF-KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 185 ~a~~~k~~Gn~~f-k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
.|......|..++ ...++..|.....+++..+.. +. +.+++..+.+-++.++.+.+... |+..++++++
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~-------~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCER--HR-------LTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cc-------hHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 3556666777777 667899999999999986553 21 23445556666788988888877 9999999987
Q ss_pred hCCC----cHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhC
Q 015006 264 ANPA----HVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 264 ~dp~----~~ka~~r~g~a~~~--l~~~~eA~~~~~~al~l~ 299 (414)
.-.. .+.-.||.-++... .+++..|++.++....+.
T Consensus 128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 6544 45555665544332 369999999999988875
No 394
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=56.57 E-value=40 Score=31.31 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhccc-CCCCChHHHHHHhhhhhHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 015006 202 FELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLK-LGECRKSIEACNKVL 262 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~-~~p~~~~e~~~~~~~~~~~~~N~a~~~~k-l~~~~~A~~~~~~al 262 (414)
-+.|...|+.|+.+... +.|.+ +++..+.+|.+..|+. +++..+|+..+.+|+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~--------PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTH--------PIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788999999987554 55554 5667788999888875 488888888777664
No 395
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=56.49 E-value=57 Score=23.90 Aligned_cols=14 Identities=21% Similarity=0.102 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhCCC
Q 015006 288 AQRDFEMMMKVDKS 301 (414)
Q Consensus 288 A~~~~~~al~l~P~ 301 (414)
|++.|.++++..|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 34444445555665
No 396
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=55.71 E-value=56 Score=34.13 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhhCCCC
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEF-------EEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~-------~eA~~~~~~al~l~P~n 302 (414)
|--+..+.+.+|..-|+.-+.+.++|.++++.+.- ++|...+.--.++.|..
T Consensus 627 fvL~KkdLneil~~YP~sq~iLrkkAr~llk~nak~~e~t~keka~a~l~~~~~i~Pk~ 685 (815)
T KOG0499|consen 627 FVLDKKDLNEILVHYPDSQRILRKKARVLLKQNAKTAEATPKEKALALLFPPKEITPKL 685 (815)
T ss_pred eEecHhHHHHHHHhCccHHHHHHHHHHHHHHhcccccccCcchhhhhhhCCccccCccc
Confidence 45566788899999999999999999999887653 34444444333445543
No 397
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=1.5e+02 Score=33.28 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=69.2
Q ss_pred hhccccccccHHHHHHHHHH------HHhhcccCCCCChHHHHHHh--hhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015006 192 TGNRLFKEGKFELAKAKYEK------VLRDFNHVNPQDDEEGKVFV--GKRNLLHLNVAACLLKLGECRKSIEACNKVLD 263 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~------al~~~~~~~p~~~~e~~~~~--~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~ 263 (414)
.|+.....+-|++|...|.+ |+..+-.-.. +-+....+. -....+++.+|.+.+..+...+|++.+-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~-~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika-- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIG-SLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhh-hHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc--
Confidence 34555566667777777765 4443311000 000000000 011357899999999999999999999887
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 264 ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 264 ~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+++-+|...-.+....|.|++-+.++..|-+.
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 78888999999999999999999999888765
No 398
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=55.13 E-value=30 Score=37.56 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=29.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 248 LGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 248 l~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a 295 (414)
+|+-++|...+++ ..+-.|.|.+|+-|...|++.+|+..|-+|
T Consensus 951 qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3444444443333 367788889999999999999988776654
No 399
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=53.85 E-value=90 Score=23.23 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCC
Q 015006 273 YRRGMAYMALGEFEEAQRD-------FEMMMKVDKSS 302 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~-------~~~al~l~P~n 302 (414)
..+|..+-..|+|++|+.. |..+++..|+.
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~ 46 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDE 46 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 3334444445555555544 44555557753
No 400
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.86 E-value=16 Score=37.14 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=37.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 246 LKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 246 ~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+++|+.+.|.+.+... ++..-|-++|.+.+..|+++-|..+|+++-.
T Consensus 329 l~lg~L~~A~~~a~~~-----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-----DDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHCT-HHHHHHHCCCC-----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 6778888877766543 5788999999999999999999999988643
No 401
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=51.95 E-value=13 Score=36.12 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL 282 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l 282 (414)
..+|+.++.+++++.++++|+++...+....|++..-.-+...+....
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK 356 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence 678999999999999999999999999999998765554444444333
No 402
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.57 E-value=32 Score=30.88 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=40.8
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHH
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIE 256 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~ 256 (414)
-....|. +|-..+-.+|+..|.++|.....-.. ....++..+|..|+++++++.|--
T Consensus 143 lq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~-----------~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 143 LQYALAT-YYTKRDPEKTIQLLLRALELSNPDDN-----------FNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCC-----------CCHHHHHHHHHHHHHhcchhhhhh
Confidence 3334443 34467889999999999995443222 236688899999999999998853
No 403
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=51.00 E-value=1.2e+02 Score=29.52 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+-|+|+.|..+...+++-+|+..|+.|+..
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~ 280 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALEL 280 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 556777777777788899999988888764
No 404
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=50.33 E-value=38 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=18.9
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhh
Q 015006 269 VKGLYRRG--MAYMALG-----EFEEAQRDFEMMMKV 298 (414)
Q Consensus 269 ~ka~~r~g--~a~~~l~-----~~~eA~~~~~~al~l 298 (414)
+.|.|++| .++..-. ++++|+..|++|.+.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 35677777 4444332 467788888777654
No 405
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.23 E-value=1.7e+02 Score=25.03 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
+-.--+..++..++|.+|+..+..+.+-.+..+-+---++.|+..+|+.+= ...-..++.-.++ +++....+.+
T Consensus 46 ~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~W-r~~A~~~le~~~~--~~a~~Lv~al 119 (153)
T TIGR02561 46 LDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEW-HVHADEVLARDAD--ADAVALVRAL 119 (153)
T ss_pred cchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHH-HHHHHHHHHhCCC--HhHHHHHHHH
Confidence 444577888999999999999999988877766666667888999988531 1122334555444 3444444433
No 406
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=49.20 E-value=42 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhh
Q 015006 270 KGLYRRGMAYMAL----GEFEEAQRDFEMMMKV 298 (414)
Q Consensus 270 ka~~r~g~a~~~l----~~~~eA~~~~~~al~l 298 (414)
.|.+++|..|..- .+..+|+..|++|.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4556666665532 2566666666666543
No 407
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=49.15 E-value=2.7e+02 Score=29.78 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANP-AHVKGLYRR-GMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp-~~~ka~~r~-g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
.|+--....+.-...+.|...|++||+..| .++|.+|-+ |+.--.-|--..|+..|++|-..-+. .+-......+-
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~--a~~l~myni~I 629 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE--AQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH--HHHHHHHHHHH
Confidence 455556666777789999999999999886 456665543 44444557788888999988765433 22233333332
Q ss_pred HHHHHHH--HHHHHHHHhhccCCCC
Q 015006 315 KQRQEVE--SKARKQFKGLFDKKPG 337 (414)
Q Consensus 315 ~~~~~~~--~~~~~~~~~~~~~~~~ 337 (414)
++..+.- ..-+..|.+.++..+.
T Consensus 630 ~kaae~yGv~~TR~iYekaIe~Lp~ 654 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKAIESLPD 654 (835)
T ss_pred HHHHHHhCCcccHHHHHHHHHhCCh
Confidence 2222211 2346667776665543
No 408
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=48.62 E-value=98 Score=25.56 Aligned_cols=60 Identities=13% Similarity=0.089 Sum_probs=47.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANP---------------AHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp---------------~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
|.++|.-.++.+++-.++-+|.+|+.+-. -++-...|+|.-+..+|+-+-.+++++-|-+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 45688888999999999999999985531 1255678899999999999999998876644
No 409
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.13 E-value=35 Score=34.73 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=56.0
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.+...-..-...+..|+...|.+....+|+- .|.++. ...-++..+-.+|.|+.|..+..-+-.+
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~----~~~~p~-----------~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRN----QQQDPV-----------LIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHh----CCCCch-----------hhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 3333333334556778888888888888883 333321 2222555666677777776666554443
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 265 NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 265 dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
-....++.--+-+.+..++++++|...-...|.
T Consensus 353 ~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 353 IGTTDSTLRCRLRSLHGLARWREALSTAEMMLS 385 (831)
T ss_pred hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 334445555555556666666666655544443
No 410
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.06 E-value=72 Score=30.12 Aligned_cols=104 Identities=17% Similarity=0.196 Sum_probs=61.7
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK- 270 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k- 270 (414)
.|+.+|..+.|..-.+..++.-..|..-+.. ++.+.-. ....+|.---..|...++-..-...+.++|.+...-+.
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGe--dD~kKGt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGE--DDQKKGT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCc--hhhhccc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 5677777777766555444443333222211 1111111 11233443445666777777777788899888753322
Q ss_pred ---HHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 271 ---GLYR--RGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 271 ---a~~r--~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
...| -|..|+.-|+|++|..+|-.|++-
T Consensus 228 lImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 228 LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 2222 267788899999999999999886
No 411
>PF12854 PPR_1: PPR repeat
Probab=47.92 E-value=50 Score=20.03 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 268 HVKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 268 ~~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
|.-.|--+-.+|.+.|++++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344555555666666666666666543
No 412
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=47.87 E-value=41 Score=25.08 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 272 LYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 272 ~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+.++|.-+-..|+|++|+..|..|++.
T Consensus 9 ~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 9 FARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455566777666666666553
No 413
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.64 E-value=1.2e+02 Score=31.04 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
..+.++++|+.|...+.-.|.-.-+.+..+--.|-....+|-+++|...+++.+.++|.
T Consensus 365 r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 365 RSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 34456667777766666665544445555544455555666677777777777766654
No 414
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.60 E-value=1.5e+02 Score=32.68 Aligned_cols=84 Identities=12% Similarity=0.062 Sum_probs=64.6
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP---- 266 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp---- 266 (414)
-+|.....+|+++.|...-+.++..+..... -.++.++++.+.++.-.|+|.+|+.....+.++..
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~----------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~ 532 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAY----------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV 532 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccc----------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc
Confidence 3455666778899999999999986543322 23478999999999999999999999988877632
Q ss_pred --CcHHHHHHHHHHHHHcCC
Q 015006 267 --AHVKGLYRRGMAYMALGE 284 (414)
Q Consensus 267 --~~~ka~~r~g~a~~~l~~ 284 (414)
-...+.+..+..+...|+
T Consensus 533 ~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 235677788889999993
No 415
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.33 E-value=1.6e+02 Score=30.51 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=49.5
Q ss_pred hhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006 192 TGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 192 ~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka 271 (414)
.+..+.-.|+-+.|+..+..++. ..++++...+++-+|.++.-+.+|.+|..++....... ++.+|
T Consensus 273 ~ar~l~~~g~~eaa~~~~~~~v~-------------~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a 338 (546)
T KOG3783|consen 273 EARILSIKGNSEAAIDMESLSIP-------------IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHA 338 (546)
T ss_pred HHHHHHHcccHHHHHHHHHhccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHH
Confidence 33444445555556666655554 12455567799999999999999999999999877765 57777
Q ss_pred HHHH
Q 015006 272 LYRR 275 (414)
Q Consensus 272 ~~r~ 275 (414)
+|.-
T Consensus 339 ~Y~Y 342 (546)
T KOG3783|consen 339 FYTY 342 (546)
T ss_pred HHHH
Confidence 7654
No 416
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=47.13 E-value=2e+02 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+-|+|..|..+...+++-+|+..|+.|...
T Consensus 239 A~A~y~~A~~~~~~~~~G~aia~L~~A~~~ 268 (377)
T PF03097_consen 239 ALAHYHQALAAEEAKKYGEAIARLRRAEEA 268 (377)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 567788888888888988888888777653
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.82 E-value=49 Score=35.91 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=27.9
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhc
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDF 216 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~ 216 (414)
++.++..|+.+|++|+|++|...|-++|..+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 5678899999999999999999999998754
No 418
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=46.33 E-value=2.4e+02 Score=27.74 Aligned_cols=29 Identities=10% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+-|+|+.|..+...+++-+|+..|+.|+.
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~ 265 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALA 265 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45677777777777888888888888776
No 419
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.91 E-value=34 Score=19.44 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
|+.+-.+|.+.+++++|...+.+..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4556666667777777776666543
No 420
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.62 E-value=58 Score=34.16 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
.+.+++++++.|.+.+.++ ++.--|-.+|.+.+..+++..|.++|.+|..+
T Consensus 645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3457899999998877766 77888999999999999999999999998665
No 421
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.49 E-value=2.2e+02 Score=25.24 Aligned_cols=85 Identities=15% Similarity=0.212 Sum_probs=56.6
Q ss_pred ccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C--cHHH
Q 015006 196 LFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP--A--HVKG 271 (414)
Q Consensus 196 ~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp--~--~~ka 271 (414)
+-+.++..+|+..|...-+ ..-.+ .-+-+....|......|+-..|+.+|..+-.-.| . .--|
T Consensus 68 lA~~~k~d~Alaaf~~lek----tg~g~---------YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 68 LAQENKTDDALAAFTDLEK----TGYGS---------YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred HHHcCCchHHHHHHHHHHh----cCCCc---------chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3445677788888877554 22111 1144566678888888999999999988765543 2 2346
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 015006 272 LYRRGMAYMALGEFEEAQRDFE 293 (414)
Q Consensus 272 ~~r~g~a~~~l~~~~eA~~~~~ 293 (414)
..|-|.+++..|-|++-..-.+
T Consensus 135 Rlraa~lLvD~gsy~dV~srve 156 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVE 156 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhh
Confidence 6777888888888887655443
No 422
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=44.85 E-value=44 Score=33.66 Aligned_cols=121 Identities=20% Similarity=0.182 Sum_probs=69.9
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCC-------------CChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHH
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNP-------------QDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSI 255 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p-------------~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~ 255 (414)
....|...+..++|..|+....+||+.+..+.. ..+++.+ .......++..+.- ..=+...++
T Consensus 34 ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~-~~~s~~~~~~a~fg---~~le~a~Cl 109 (471)
T KOG4459|consen 34 AYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEA-GSASFGGLYLAIFG---HLLERAACL 109 (471)
T ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchh-cccccchhHHHHHH---HHHHHHHHH
Confidence 446778888889999999999999875432111 0010000 00000001110000 011123344
Q ss_pred HHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 256 EACNKVLDANPAH----------VKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 256 ~~~~~al~~dp~~----------~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
.-|...+.-.|.. -..|-++-.||++.|++..|++.-...+--+|++ .+++..+.--+
T Consensus 110 ~rCkg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdd-e~ik~~ldyYq 177 (471)
T KOG4459|consen 110 RRCKGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDD-EDIKQNLDYYQ 177 (471)
T ss_pred HHHhcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcH-HHHHHHHHHHH
Confidence 4454444333322 2567778889999999999999988888889997 56776665544
No 423
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.80 E-value=38 Score=33.16 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006 181 GIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 181 e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
.+-..+..+...|+.++..++|..|...|..|..++.
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ 72 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSD 72 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHH
Confidence 4555788899999999999999999999999998654
No 424
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=44.70 E-value=1.2e+02 Score=22.06 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=9.3
Q ss_pred HHHcCCHHHHHHHHHHHHh
Q 015006 279 YMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 279 ~~~l~~~~eA~~~~~~al~ 297 (414)
.-..|+|++|+..|..|++
T Consensus 16 ~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 16 EDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 3334555555555554443
No 425
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=44.50 E-value=1.3e+02 Score=22.37 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
...|..--..|+|++|+..|..|++.
T Consensus 10 v~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 10 VTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 34444455678888888888888875
No 426
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.32 E-value=1.2e+02 Score=21.74 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
..+|.-.-..|++++|+..|..|+.
T Consensus 9 ~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 9 IKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444455666666655555544
No 427
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.82 E-value=3.2e+02 Score=26.61 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=65.3
Q ss_pred hhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Q 015006 231 VGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANP------AH--VKGLYRRGMAYMALGEFEEAQRDFEMMMKV--DK 300 (414)
Q Consensus 231 ~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp------~~--~ka~~r~g~a~~~l~~~~eA~~~~~~al~l--~P 300 (414)
.+..+.+..-+|..|-+.++|..|.+...- +.++. .+ .--+.|+|.+|...++-.+|.....++--+ +.
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 344567888999999999999998776542 23332 12 334678899999999999999988887433 45
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 015006 301 SSEPDATAALSKLKKQRQEVESK 323 (414)
Q Consensus 301 ~n~~~~~~~l~~~~~~~~~~~~~ 323 (414)
+| ..+.-+++.|..+.-..+.+
T Consensus 178 ~N-e~Lqie~kvc~ARvlD~krk 199 (399)
T KOG1497|consen 178 SN-EQLQIEYKVCYARVLDYKRK 199 (399)
T ss_pred cC-HHHHHHHHHHHHHHHHHHHH
Confidence 55 67887888887766555443
No 428
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=43.33 E-value=79 Score=34.04 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=15.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 015006 274 RRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 274 r~g~a~~~l~~~~eA~~~~~~a 295 (414)
-.|.-|...|+|+-|.+.|-++
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhc
Confidence 3567777788888887766543
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=43.21 E-value=3.2e+02 Score=26.47 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
..+||....+|+..|. ++-| .-| +.-|.-|+++|..+|+-+.++
T Consensus 7 l~kaI~lv~kA~~eD~--a~nY-~eA-----~~lY~~aleYF~~~lKYE~~~ 50 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDN--AKNY-EEA-----LRLYQNALEYFLHALKYEANN 50 (439)
T ss_pred HHHHHHHHHHHhhhcc--hhch-HHH-----HHHHHHHHHHHHHHHHhhhcC
Confidence 3578888888877653 2211 111 112455778888888877655
No 430
>PRK01490 tig trigger factor; Provisional
Probab=42.38 E-value=41 Score=34.06 Aligned_cols=41 Identities=20% Similarity=0.075 Sum_probs=29.4
Q ss_pred ccccCCcCcEEEEEEcCCCcCCCCCCCCCCCCCeeeEEEEeeEEE
Q 015006 2 GIGTMTREEKAVIYVTSQYLTPSPLMPVVEGCEEVHFEVELVHLI 46 (414)
Q Consensus 2 ~~~~m~~Ge~~~~~i~~~~~~g~~~~~~ip~~~~l~~~vel~~~~ 46 (414)
+|.+|++||...|.++.--.|+.. . -+|.++.|+|++.+..
T Consensus 201 ~L~G~k~Ge~~~~~~~~p~~~~~~---~-lagk~~~f~v~v~~V~ 241 (435)
T PRK01490 201 QLVGMKAGEEKTIDVTFPEDYHAE---D-LAGKEATFKVTVKEVK 241 (435)
T ss_pred HhCCCCCCCeeEEEecCccccccc---c-CCCCeEEEEEEEEEec
Confidence 588999999999887654344331 1 2458889999988764
No 431
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=42.07 E-value=66 Score=33.71 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=45.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 015006 247 KLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALS 311 (414)
Q Consensus 247 kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~ 311 (414)
....|.-|...|.+. .+ +..-+|...|.|++++++|..|+.-|.+|+++..++-+++...+.
T Consensus 568 e~ErYqlaV~mckKc-~i--D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~dii 629 (1141)
T KOG1811|consen 568 EAERYQLAVEMCKKC-GI--DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDII 629 (1141)
T ss_pred HHHHHHHHHHHHhhc-CC--CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHH
Confidence 345577777777665 22 345577888999999999999999999999997665555544443
No 432
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.00 E-value=98 Score=29.59 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCCCCchhhhhHH--HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC
Q 015006 173 DWTGLSFDGIMDE--AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE 250 (414)
Q Consensus 173 ~~~~~~~~e~~~~--a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~ 250 (414)
..|..+..++++. ...+...+..+...|.|.+|+...++++. ++|-++. .+.-+-..+..+|+
T Consensus 264 y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~lt----ldpL~e~-----------~nk~lm~~la~~gD 328 (361)
T COG3947 264 YPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALT----LDPLSEQ-----------DNKGLMASLATLGD 328 (361)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhh----cChhhhH-----------HHHHHHHHHHHhcc
Confidence 3455566666653 33455667778899999999999999999 6666643 33345566778888
Q ss_pred HHHHHHHHHH
Q 015006 251 CRKSIEACNK 260 (414)
Q Consensus 251 ~~~A~~~~~~ 260 (414)
--.|+.++++
T Consensus 329 ~is~~khyer 338 (361)
T COG3947 329 EISAIKHYER 338 (361)
T ss_pred chhhhhHHHH
Confidence 7777777664
No 433
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.68 E-value=70 Score=18.58 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
.|+.+..++.+.|+++.|...++.-.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45566667777777777777666543
No 434
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.31 E-value=3.3e+02 Score=26.19 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 015006 251 CRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 251 ~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~ 303 (414)
.+..+..+++||+.+|++.+-+..+=.+..++..-++...-+++++..+|++.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh
Confidence 45667788889999999999988888888899999999999999999999873
No 435
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.50 E-value=77 Score=18.61 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 015006 254 SIEACNKVLDANPAHVKGLYRRGMAYMA 281 (414)
Q Consensus 254 A~~~~~~al~~dp~~~ka~~r~g~a~~~ 281 (414)
.+..+..+|..+|.|--++..|--++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4667788888888888887666554443
No 436
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=1.9e+02 Score=27.38 Aligned_cols=95 Identities=9% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG-EFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVE 321 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~-~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~ 321 (414)
+.+.+-..-..|++....+|.++|.|--.+-.|-.++..++ ++.+-++.+...++-+|.| -.+......+-+.+....
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-YQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-YQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-hhHHHHHHHHHHHhcCcc
Q ss_pred HHHHHHHHhhccCCCCC
Q 015006 322 SKARKQFKGLFDKKPGE 338 (414)
Q Consensus 322 ~~~~~~~~~~~~~~~~~ 338 (414)
-.+-...+.|+....+.
T Consensus 130 ~rELef~~~~l~~DaKN 146 (318)
T KOG0530|consen 130 FRELEFTKLMLDDDAKN 146 (318)
T ss_pred cchHHHHHHHHhccccc
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.15 E-value=71 Score=18.10 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHhhCCCC
Q 015006 284 EFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 284 ~~~eA~~~~~~al~l~P~n 302 (414)
+++.|...|++++...|.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 2 DIERARKIYERALEKFPKS 20 (33)
T ss_pred cHHHHHHHHHHHHHHCCCC
Confidence 4455555666666555543
No 438
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.11 E-value=1.9e+02 Score=22.91 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG 283 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~ 283 (414)
.++.|...+-.|+|..|.+...++-+..+...-+|.--|+|-..+|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444555555566666666666555444444444444444444443
No 439
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.06 E-value=2e+02 Score=28.23 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=45.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHH---HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 243 ACLLKLGECRKSIEACNKVLDA-NPAHVKGLYR---RGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~-dp~~~ka~~r---~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.+|+-+|+...-...+.+++-. +|+-+-.-|- .+..+...|-|++|.+.-.+|++++|.+
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D 208 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD 208 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence 4556678888888888888865 5544332232 3566889999999999999999999986
No 440
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=39.94 E-value=2.1e+02 Score=28.29 Aligned_cols=29 Identities=7% Similarity=0.005 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+-|+|+.|..+...+++-+|+..|+.|+.
T Consensus 252 A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~ 280 (361)
T cd09239 252 SIAHLHMGKQSEEQQKMGERVAYYQLAND 280 (361)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44557777777777788888888877765
No 441
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.33 E-value=2.3e+02 Score=36.21 Aligned_cols=84 Identities=13% Similarity=0.011 Sum_probs=65.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----C---CHHHHHHHHHHHHhhCCCCHH
Q 015006 233 KRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMAL-----G---EFEEAQRDFEMMMKVDKSSEP 304 (414)
Q Consensus 233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l-----~---~~~eA~~~~~~al~l~P~n~~ 304 (414)
..+..+.-.|.-+.+++++++|-+.+..|+.++-..+|||+..|.-+.+. + --..|+.+|-+|....-+ .
T Consensus 2810 q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~--s 2887 (3550)
T KOG0889|consen 2810 QKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS--S 2887 (3550)
T ss_pred HHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc--h
Confidence 34567777899999999999999999999999999999999999776653 2 135688888888887654 3
Q ss_pred HHHHHHHHHHHHHH
Q 015006 305 DATAALSKLKKQRQ 318 (414)
Q Consensus 305 ~~~~~l~~~~~~~~ 318 (414)
.++..+.++.-.+.
T Consensus 2888 kaRk~iakvLwLls 2901 (3550)
T KOG0889|consen 2888 KARKLIAKVLWLLS 2901 (3550)
T ss_pred hhHHHHHHHHHHHH
Confidence 57777777655443
No 442
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=39.00 E-value=3.4e+02 Score=27.26 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=53.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 015006 245 LLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGE--FEEAQRDFEMMMKVDKSSEPDATAALSKL 313 (414)
Q Consensus 245 ~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~--~~eA~~~~~~al~l~P~n~~~~~~~l~~~ 313 (414)
..+..-+++-+.....+|..+|+.--+|+.|..++.+.+. +..=++.++++|++||.|- .+.....-+
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf-h~W~YRRfV 154 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF-HAWHYRRFV 154 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc-cchHHHHHH
Confidence 3444567777888889999999999999999999997763 6888888999999999873 344443333
No 443
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=38.60 E-value=38 Score=27.29 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=36.8
Q ss_pred CCCchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhhcc
Q 015006 175 TGLSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 175 ~~~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
+..+....+..|..+...|..++..|+.+.|-..|.+.+.++.
T Consensus 27 ~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 27 KNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999999999999883
No 444
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=38.32 E-value=1.1e+02 Score=26.13 Aligned_cols=69 Identities=23% Similarity=0.261 Sum_probs=47.6
Q ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHhhccc---CCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 185 EAEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNH---VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 185 ~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~---~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
........+|.+++.|+...|.....-+-.-+.. ..|-. ...-..+.|..++..|+|.+|......|
T Consensus 74 ~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~----------~~~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 74 EKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLA----------QTPAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHH----------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHH----------hhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667778899999999999999887765432211 11111 1235678999999999999999988888
Q ss_pred HH
Q 015006 262 LD 263 (414)
Q Consensus 262 l~ 263 (414)
+.
T Consensus 144 ~~ 145 (155)
T PF10938_consen 144 LD 145 (155)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 445
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.97 E-value=3.4e+02 Score=28.21 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDAN------P-AHVKGLYRRGMAYMALGE-FEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~d------p-~~~ka~~r~g~a~~~l~~-~~eA~~~~~~al~l~P~n 302 (414)
-++-+|.|+-.+|+-..|...+..+++-. + --|-|+|-+|..+..++. +.+|.+.+.+|-+-..+.
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 35558899999999999999998887321 1 137899999999999999 999999999998877554
No 446
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=37.87 E-value=4.2e+02 Score=27.09 Aligned_cols=53 Identities=17% Similarity=0.284 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCC
Q 015006 250 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALG--EFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 250 ~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~--~~~eA~~~~~~al~l~P~n 302 (414)
+-..|+..|..||..+|..+.-.+..=+.|.... +---.+..|+.++..||.-
T Consensus 327 rrR~Ale~ylaALqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkk 381 (615)
T KOG3540|consen 327 RRRDALENYLAALQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKK 381 (615)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 3467999999999999988866555555555443 3334678899999999974
No 447
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=37.80 E-value=71 Score=18.36 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVL 262 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al 262 (414)
|+.+-.+|.+.+++++|...+.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445556666666766666666543
No 448
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=36.44 E-value=1.4e+02 Score=28.43 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=49.0
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKV 261 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~a 261 (414)
...+......+...|+++.++...++.+. ..|.+ -.+|.-+-.+|++.|+...|+..|.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~----~dp~~-----------E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE----LDPYD-----------EPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh----cCccc-----------hHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 44556667777888889999998888888 77777 456777888899999999999988776
No 449
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.05 E-value=74 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.1
Q ss_pred cccccccHHHHHHHHHHHHhhcc
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFN 217 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~ 217 (414)
.+.+.|+|..|+..|.+|...+.
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~ 117 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFE 117 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHH
Confidence 34578999999999999998654
No 450
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=36.03 E-value=4.6e+02 Score=26.30 Aligned_cols=87 Identities=20% Similarity=0.191 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHH-HHHHHH
Q 015006 202 FELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLG--ECRKSIEACNKVLDANPAHVKGL-YRRGMA 278 (414)
Q Consensus 202 y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~--~~~~A~~~~~~al~~dp~~~ka~-~r~g~a 278 (414)
...-+..-..+|. .+|++ ..+++-|..+..+.. +|..=+..|+++|+.||.|-.++ |||=.+
T Consensus 91 ld~eL~~~~~~L~----~npks-----------Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 91 LDEELKYVESALK----VNPKS-----------YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred hHHHHHHHHHHHH----hCchh-----------HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 3344444455555 55555 567888888888765 47889999999999999987775 555444
Q ss_pred HHHcCC---HHHHHHHHHHHHhhCCCCH
Q 015006 279 YMALGE---FEEAQRDFEMMMKVDKSSE 303 (414)
Q Consensus 279 ~~~l~~---~~eA~~~~~~al~l~P~n~ 303 (414)
-..... ..+=++...+++.-+++|-
T Consensus 156 ~~~~~~~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 156 EQAERSRNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred HHHhcccccchhHHHHHHHHHhccchhh
Confidence 433333 6666778888888888773
No 451
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=34.67 E-value=1.3e+02 Score=24.70 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
..+|..++..|++++|...|-+|+.+.|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 34688888889999999999999999887
No 452
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=33.93 E-value=1.9e+02 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
.+.|.-.-..|+|++|+..|..|++
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444455555555555554443
No 453
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=33.86 E-value=4.4e+02 Score=29.69 Aligned_cols=64 Identities=19% Similarity=0.127 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDANPAHVKG-------LYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka-------~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
=|+--|.+|..+++|.+-++.+..|++.-|.++.- .||+-.+.... -..|....--|+..-|..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKH--RREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCccc
Confidence 37888999999999999999999999999887543 34554444433 345777777788888875
No 454
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.80 E-value=4.4e+02 Score=25.33 Aligned_cols=116 Identities=15% Similarity=0.212 Sum_probs=69.6
Q ss_pred HHHHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q 015006 186 AEKIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRK--SIEACNKVLD 263 (414)
Q Consensus 186 a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~--A~~~~~~al~ 263 (414)
|+--...|..+....+|..|..+|-.|++-+..+..+ .+.+..++..+ ++. +.++.-++ ++-....+++
T Consensus 206 a~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d----~kAc~sLkYml---LSk--IMlN~~~evk~vl~~K~t~~ 276 (421)
T COG5159 206 AQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMD----VKACVSLKYML---LSK--IMLNRREEVKAVLRNKNTLK 276 (421)
T ss_pred HHHHHhccceeeccccchhHHHHHHHHHhccccccch----HHHHHHHHHHH---HHH--HHHhhHHHHHHHHccchhHh
Confidence 4444566788888899999999999999865433322 22222222211 222 22333333 3333334454
Q ss_pred -hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 015006 264 -ANPAHVKGLYRRGMAYMA--LGEFEEAQRDFEMMMKVDKSSEPDATAALSKLK 314 (414)
Q Consensus 264 -~dp~~~ka~~r~g~a~~~--l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~ 314 (414)
++.....|+...+.|+-. +.+|..|++.|..-|..|| -++.++..+.
T Consensus 277 ~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~----~iRsHl~~LY 326 (421)
T COG5159 277 HYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS----FIRSHLQYLY 326 (421)
T ss_pred hhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH----HHHHHHHHHH
Confidence 566678888888888865 5678889988887776654 3555555443
No 455
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=33.44 E-value=3.5e+02 Score=24.16 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHh
Q 015006 202 FELAKAKYEKVLR 214 (414)
Q Consensus 202 y~~A~~~Y~~al~ 214 (414)
...|.+.|++|-.
T Consensus 128 ~~Ka~~y~traCd 140 (248)
T KOG4014|consen 128 SEKAERYMTRACD 140 (248)
T ss_pred cHHHHHHHHHhcc
Confidence 4456666666554
No 456
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.39 E-value=2.1e+02 Score=30.66 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=42.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 244 CLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 244 ~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
..+..++|..+...+...-.-.......+|.+|+++..+|+-++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 445788998877777664332335688999999999999999999999998754
No 457
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.27 E-value=3.9e+02 Score=24.62 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=59.1
Q ss_pred cccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-H-H
Q 015006 195 RLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVK-G-L 272 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~k-a-~ 272 (414)
++.+.+...+|+..-..-++ ..|.+ ..+..-+=..+.-.|+|.+|...|+-+-++.|+..+ + +
T Consensus 10 eLL~~~sL~dai~~a~~qVk----akPtd-----------a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~l 74 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK----AKPTD-----------AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASL 74 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh----cCCcc-----------ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHH
Confidence 45667888899988888887 67766 222222333445689999999999999999997644 2 3
Q ss_pred HHHHHHHHH--------------cC-CHHHHHHHHHHHHhhCCC
Q 015006 273 YRRGMAYMA--------------LG-EFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 273 ~r~g~a~~~--------------l~-~~~eA~~~~~~al~l~P~ 301 (414)
||-..-... +| ...+=+..+..|+.++.+
T Consensus 75 yr~lir~ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~d 118 (273)
T COG4455 75 YRHLIRCEAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSD 118 (273)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence 332211111 12 455556667777777655
No 458
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.10 E-value=1.9e+02 Score=30.56 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHh
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLR 214 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~ 214 (414)
++++.|+.+.+.+++..|.+++.+|..
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 455666666666666666666666544
No 459
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=33.01 E-value=2e+02 Score=21.24 Aligned_cols=49 Identities=18% Similarity=0.311 Sum_probs=24.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015006 276 GMAYMALGEFEEAQRDFEMMMKV-------DKSSEPDATAALSKLKKQRQEVESKARKQFK 329 (414)
Q Consensus 276 g~a~~~l~~~~eA~~~~~~al~l-------~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~ 329 (414)
|.-.-..|+|++|...|..++.. +++ +. ....++.+..++-.+..+.+.
T Consensus 13 Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~--~~---~k~~ir~K~~eYl~RAE~i~~ 68 (75)
T cd02677 13 ALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSS--PE---RREAVKRKIAEYLKRAEEILR 68 (75)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC--HH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33333447777777766666654 443 11 234455555555544444443
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=32.06 E-value=2e+02 Score=25.59 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 015006 241 VAACLLKLGECRKSIEACNKVLDANPAHVKG 271 (414)
Q Consensus 241 ~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka 271 (414)
..+++++.|.|++|.+.+++.+. +|++.+-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 44566788888888888888777 7776665
No 461
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.30 E-value=67 Score=28.66 Aligned_cols=40 Identities=30% Similarity=0.514 Sum_probs=27.4
Q ss_pred EEEEEEEEeecCCCceEeeeccCC---CCCceEEEcCCCCchHHHHHHh
Q 015006 80 LCVHYKGMLLNEEKKVFYDTRVDN---DGQPLEFSSGEGLVPEGFEMCV 125 (414)
Q Consensus 80 v~v~y~g~~~~~~g~~~~~s~~~~---~~~p~~f~lG~~~v~~gle~~l 125 (414)
+.+.+.|. |++|+.||-++... +|+.++| |+|+.|++...
T Consensus 135 lSMAn~Gp--DtNGsQFfItT~~t~wLDGkhVVF----GqVl~Gmdvv~ 177 (217)
T KOG0880|consen 135 LSMANAGP--DTNGSQFFITTVKTPWLDGKHVVF----GQVLEGMDVVR 177 (217)
T ss_pred EeeeccCC--CCCCceEEEEecCCccccCceeEE----eeehhhHHHHH
Confidence 44445553 56799999877542 5677777 67888888754
No 462
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=30.45 E-value=28 Score=26.65 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=17.3
Q ss_pred hhhhHHHHhcCCcCcccccccc
Q 015006 392 PVEDYFLLLDLIDVPYYDIKYQ 413 (414)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~ 413 (414)
.+++|+++--=.|.+||||-|-
T Consensus 65 Il~dAlqQWA~~n~kY~DIPYI 86 (91)
T PF15127_consen 65 ILSDALQQWAENNIKYSDIPYI 86 (91)
T ss_pred HHHHHHHHHHHhCccccCCCcc
Confidence 3567777777889999999883
No 463
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.30 E-value=3.5e+02 Score=26.59 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~ 299 (414)
.-.++.+|.-|+..++++.|+-.|.+|+...
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ 155 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANERQ 155 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHHHH
Confidence 3445667888888999999999888887653
No 464
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.18 E-value=3.1e+02 Score=25.23 Aligned_cols=30 Identities=0% Similarity=0.032 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 273 YRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 273 ~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
..+|+.....++|++++..+++++.++|+-
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 344555555555555555555555555443
No 465
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.82 E-value=89 Score=33.47 Aligned_cols=45 Identities=13% Similarity=0.039 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 015006 235 NLLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEE 287 (414)
Q Consensus 235 ~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~e 287 (414)
..++.|+|..+..+..|.+|.+++.+.-. .-+...|++.+..|++
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~ 840 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE 840 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh
Confidence 45777888888888888888888876522 1234555666666654
No 466
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=29.13 E-value=5.5e+02 Score=25.05 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
+-|+|+.|.++...+++-+|+..|+.|+.+
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~ 284 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALEL 284 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 456777888888888899999988888763
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=29.12 E-value=2.5e+02 Score=27.52 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015006 250 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEM 294 (414)
Q Consensus 250 ~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~ 294 (414)
..-+|+...+.++..+|.|....+.+.+.|..+|-...|...|..
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 456778888899999999999999999999999999999988753
No 468
>PRK10869 recombination and repair protein; Provisional
Probab=28.86 E-value=6.4e+02 Score=26.48 Aligned_cols=49 Identities=10% Similarity=0.108 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 253 KSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 253 ~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
.|+.....+-.+||......-++-.++..+.+....+..|...+..||.
T Consensus 248 ~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~ 296 (553)
T PRK10869 248 SAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPN 296 (553)
T ss_pred HHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH
Confidence 4555555555677777777777888888888777777777777777774
No 469
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=28.76 E-value=4.3e+02 Score=23.66 Aligned_cols=81 Identities=10% Similarity=0.016 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHHhCCCcHHHH
Q 015006 200 GKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKL-----G--ECRKSIEACNKVLDANPAHVKGL 272 (414)
Q Consensus 200 g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl-----~--~~~~A~~~~~~al~~dp~~~ka~ 272 (414)
++...|++.|..|-. .+. ..+..|+++.+..- . +...|+.+++++..+ ++..|.
T Consensus 87 ~~l~~a~r~~~~aC~----~n~-------------~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl--~~~~aC 147 (248)
T KOG4014|consen 87 ASLSKAIRPMKIACD----ANI-------------PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL--EDGEAC 147 (248)
T ss_pred cCHHHHHHHHHHHhc----cCC-------------HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC--CCchHH
Confidence 456777777777665 111 23444555554422 1 255677777777665 344555
Q ss_pred HHHHHHHHH------------------------cCCHHHHHHHHHHHHhhC
Q 015006 273 YRRGMAYMA------------------------LGEFEEAQRDFEMMMKVD 299 (414)
Q Consensus 273 ~r~g~a~~~------------------------l~~~~eA~~~~~~al~l~ 299 (414)
|.+..-|+. +.+.+.|.+.--+|.+++
T Consensus 148 f~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~ 198 (248)
T KOG4014|consen 148 FLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD 198 (248)
T ss_pred HHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC
Confidence 555444433 245566666666666664
No 470
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=28.63 E-value=4e+02 Score=26.75 Aligned_cols=102 Identities=16% Similarity=0.073 Sum_probs=62.0
Q ss_pred HHHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCH--------------HH
Q 015006 188 KIRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGEC--------------RK 253 (414)
Q Consensus 188 ~~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~--------------~~ 253 (414)
.++..|.-+|-.++|+.|...|.-+.+.+... ......+.++--.|.|.+.++.. +.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D---------kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~ 280 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND---------KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLEN 280 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc---------hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHH
Confidence 34567788899999999999999988844211 11122244555566666666532 33
Q ss_pred HHHHHHHH----HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 015006 254 SIEACNKV----LDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKV 298 (414)
Q Consensus 254 A~~~~~~a----l~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l 298 (414)
|...|.++ .....-...+.+-.+.++..++.+.+|...+-++...
T Consensus 281 A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 281 AYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred HHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 33334331 1111133456666777788888888887777766654
No 471
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=28.61 E-value=3.4e+02 Score=25.90 Aligned_cols=110 Identities=14% Similarity=0.039 Sum_probs=64.1
Q ss_pred hhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-H
Q 015006 191 VTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH-V 269 (414)
Q Consensus 191 ~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~-~ 269 (414)
+.+..++-..+|..|+..+++++..+...... ++......+.+..+..-=-.|+..|++|.+++...-+-...-.+- +
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~-ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPp 118 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADA-EEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPP 118 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH
Confidence 34455567789999999999999976321111 111112223334444434467889999999998776554432222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 270 KGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 270 ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
|.+----..|.+.+++....+. -.+--.+|+|
T Consensus 119 kIleLCILLysKv~Ep~amlev-~~~WL~~p~N 150 (309)
T PF07163_consen 119 KILELCILLYSKVQEPAAMLEV-ASAWLQDPSN 150 (309)
T ss_pred HHHHHHHHHHHHhcCHHHHHHH-HHHHHhCccc
Confidence 3333333456677887666543 3344457776
No 472
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=28.49 E-value=59 Score=24.16 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=30.7
Q ss_pred chhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHh
Q 015006 178 SFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 214 (414)
Q Consensus 178 ~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~ 214 (414)
...+.++.|..+.+.|..++++|++..|+.++.=|-.
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~G 63 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHG 63 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3567888999999999999999999999988766554
No 473
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.42 E-value=2.9e+02 Score=21.64 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
.+..++...-..+.....|+.. |..-+++.+.|+..|.++.. ...++|...+..-++
T Consensus 17 ~l~~~~~~l~~~~~E~~~v~~E----L~~l~~d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e 73 (105)
T cd00632 17 AYIVQRQKVEAQLNENKKALEE----LEKLADDAEVYKLVGNVLVK-QEKEEARTELKERLE 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHcCCCcchHHHHhhhHHhh-ccHHHHHHHHHHHHH
Confidence 3444555555555555554433 33335789999999999988 577888887776543
No 474
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=28.28 E-value=83 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.9
Q ss_pred HHHHHHhhhcCCCCeEEEEecCC
Q 015006 119 EGFEMCVRLMLPGEIALVTCPPD 141 (414)
Q Consensus 119 ~gle~~l~~M~~GE~~~v~i~~~ 141 (414)
+-+..|+..|+.||++.|.+.+.
T Consensus 35 ~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 35 AELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp HHHHHHHTT-BTT-EEEEEETTS
T ss_pred HHHHHHHHHhhcCceeEEEEecC
Confidence 46889999999999999998654
No 475
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=27.77 E-value=2.6e+02 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhC
Q 015006 251 CRKSIEACNKVLDAN 265 (414)
Q Consensus 251 ~~~A~~~~~~al~~d 265 (414)
|+.|....++||..|
T Consensus 5 ~~~A~~~I~kaL~~d 19 (79)
T cd02679 5 YKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHhhhh
Confidence 556666666666554
No 476
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=27.75 E-value=2.2e+02 Score=30.85 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=31.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n 302 (414)
.-...+.++|.-+...|+|++|-+.|-.|++++.-|
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence 456788899999999999999999999999998654
No 477
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.93 E-value=1.2e+02 Score=29.93 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHH
Q 015006 240 NVAACLLKLGECRKSIEACNKVLDAN--------PAHVKGLYRRGMAYMALGEFEEAQRD 291 (414)
Q Consensus 240 N~a~~~~kl~~~~~A~~~~~~al~~d--------p~~~ka~~r~g~a~~~l~~~~eA~~~ 291 (414)
-.|.-++.+++|..|...+..|..+- -++..++|-.|.+++.+++++.++-.
T Consensus 46 ~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 46 QAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35666788999999999999998664 25688999999999999999887743
No 478
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=26.16 E-value=3.4e+02 Score=26.71 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+-|+|+.|..+...+++-+|+..|+.|..
T Consensus 248 A~A~y~~a~~l~e~~k~GeaIa~L~~A~~ 276 (353)
T cd09243 248 AYAYCYHGETLLAKDKCGEAIRSLQESEK 276 (353)
T ss_pred HHHHHHHHHHhHhcchHHHHHHHHHHHHH
Confidence 44566666666666667777776666654
No 479
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.26 E-value=4.4e+02 Score=27.46 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=0.0
Q ss_pred cccccccHHHHHHHHHHHHhhc-----------------ccCCCCChHHHHHHhhhhhHHHHHHHHH--------HHHcC
Q 015006 195 RLFKEGKFELAKAKYEKVLRDF-----------------NHVNPQDDEEGKVFVGKRNLLHLNVAAC--------LLKLG 249 (414)
Q Consensus 195 ~~fk~g~y~~A~~~Y~~al~~~-----------------~~~~p~~~~e~~~~~~~~~~~~~N~a~~--------~~kl~ 249 (414)
.++.+++-..|+..|.+|+.-+ ..+..+.+.-.....++...+-.+++.+ |.-..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhhCCCC
Q 015006 250 ECRKSIEACNKVLDANPAHVKGLYRRGMAYMA--------------------LGEFEEAQRDFEMMMKVDKSS 302 (414)
Q Consensus 250 ~~~~A~~~~~~al~~dp~~~ka~~r~g~a~~~--------------------l~~~~eA~~~~~~al~l~P~n 302 (414)
+|.+|+....-.|+.|..+.+|.-.+-.-+.. -.+|-+|+-+|++.+-++..|
T Consensus 220 N~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 220 NWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred CHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
No 480
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=25.19 E-value=2.8e+02 Score=20.40 Aligned_cols=24 Identities=8% Similarity=0.025 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 274 RRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 274 r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
.+|...-..|+|++|+..|..|++
T Consensus 11 ~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455666666655555554
No 481
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=25.08 E-value=3e+02 Score=20.63 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015006 277 MAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLFDK 334 (414)
Q Consensus 277 ~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (414)
..+..+..++=|+.++.--|.-+|++ ..+......+.+++++. ++.|.+.|..
T Consensus 3 ~LL~~I~~~~Fa~~dl~LyLDTHP~d-~~Al~~y~~~~~~~~~l----~~~Ye~~yGP 55 (78)
T PF12652_consen 3 ELLREIQEVSFAVVDLNLYLDTHPDD-QEALEYYNEYSKQRKQL----KKEYEKRYGP 55 (78)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHH----HHHHHHHhCC
Confidence 34556667777888999899999998 56666666665544433 4455555543
No 482
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.74 E-value=3.7e+02 Score=22.56 Aligned_cols=39 Identities=10% Similarity=0.047 Sum_probs=30.7
Q ss_pred CchhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHhh
Q 015006 177 LSFDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLRD 215 (414)
Q Consensus 177 ~~~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~~ 215 (414)
.+.++.-..-..-.+.|..++.+|+++++..++..||.+
T Consensus 72 ~d~~~~E~~Fmqqv~lGE~L~~qg~~e~ga~h~~nAi~v 110 (143)
T KOG4056|consen 72 SDAEEVEKFFMQQVQLGEELLAQGNEEEGAEHLANAIVV 110 (143)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHccCHHHHHHHHHHHHhh
Confidence 344555445566678899999999999999999999984
No 483
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.49 E-value=2.3e+02 Score=22.40 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.0
Q ss_pred hhhhhHHHHHHHhhhccccccccHHHHHHHHHHHHh
Q 015006 179 FDGIMDEAEKIRVTGNRLFKEGKFELAKAKYEKVLR 214 (414)
Q Consensus 179 ~~e~~~~a~~~k~~Gn~~fk~g~y~~A~~~Y~~al~ 214 (414)
...+.+++...-.+|-..+-.|+|..|.+...++-+
T Consensus 52 ~~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~ 87 (108)
T PF07219_consen 52 RRRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAK 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344566788888999999999999999999999976
No 484
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=24.01 E-value=5.2e+02 Score=26.48 Aligned_cols=98 Identities=9% Similarity=-0.002 Sum_probs=63.5
Q ss_pred HHhhhccccccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 015006 189 IRVTGNRLFKEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDANPAH 268 (414)
Q Consensus 189 ~k~~Gn~~fk~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~dp~~ 268 (414)
+-.+|-.+-+++++.+|...|.+...-.. +++. -+.-.++.|+-.-.+-+++.+.-.......-+..|..
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~----~~~f------~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s 78 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKE----SSPF------LLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKS 78 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhh----cchH------HHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCc
Confidence 44567777899999999999999877321 1110 1112345555544455555555444444444556777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
+...+-.|...++.+.|..|++.+..--
T Consensus 79 ~~l~LF~~L~~Y~~k~~~kal~~ls~w~ 106 (549)
T PF07079_consen 79 AYLPLFKALVAYKQKEYRKALQALSVWK 106 (549)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7777888888889999999988775443
No 485
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=23.93 E-value=2.5e+02 Score=28.94 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHH
Q 015006 201 KFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLNVAACLLKLGE-CRKSIEACNKVLDANPAHVKGL 272 (414)
Q Consensus 201 ~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~-~~~A~~~~~~al~~dp~~~ka~ 272 (414)
.|.+-...|.++|. ..|.+ +.++.-.|.-.+..+. .+.|...+.++|+.+|++++-+
T Consensus 120 ~~~~v~ki~~~~l~----~Hp~~-----------~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 120 TYGEVKKIFAAMLA----KHPNN-----------PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred chhHHHHHHHHHHH----hCCCC-----------chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHH
Confidence 36666777888887 56666 4455555555555554 8899999999999999997643
No 486
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=23.48 E-value=87 Score=30.22 Aligned_cols=61 Identities=18% Similarity=0.134 Sum_probs=42.4
Q ss_pred ccccHHHHHHHHHHHHhhcccCCCCChHHHHHHhhhhhHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 015006 198 KEGKFELAKAKYEKVLRDFNHVNPQDDEEGKVFVGKRNLLHLN-VAACLLKLGECRKSIEACNKVLDANPAHVKGLY 273 (414)
Q Consensus 198 k~g~y~~A~~~Y~~al~~~~~~~p~~~~e~~~~~~~~~~~~~N-~a~~~~kl~~~~~A~~~~~~al~~dp~~~ka~~ 273 (414)
+.|-|.+--..|.+++. ..|.+ +.++.- -+.-+.-.+++..|...+.++|+++|.+++.|+
T Consensus 119 k~k~y~~~~nI~~~~l~----khP~n-----------vdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 119 KKKMYGEMKNIFAECLT----KHPLN-----------VDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred HHHHHHHHHHHHHHHHh----cCCCC-----------ceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 34466666677777777 67766 333322 223345668899999999999999999987654
No 487
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=23.48 E-value=5.4e+02 Score=25.56 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=62.7
Q ss_pred ccccccccHHHHHHHHHHHHhhccc-CCCCChHHHHHHhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 015006 194 NRLFKEGKFELAKAKYEKVLRDFNH-VNPQDDEEGKVFVGKRNLLHLNVAACLLKLGECRKSIEACNKVLDA-------- 264 (414)
Q Consensus 194 n~~fk~g~y~~A~~~Y~~al~~~~~-~~p~~~~e~~~~~~~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~~-------- 264 (414)
+....+....++.+.-.++...+-. ..|......+.. ..-+-+-+...|+++++++.|-.... |.+.
T Consensus 138 ~s~~~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g---~y~iaNlL~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di~~ 213 (413)
T COG5600 138 KSELNQDNLSKISRLLTRMFNSILNDRSPALNPSKKVG---LYYIANLLFQIYLRLGRFKLCENFLK-ASKEVSMPDISE 213 (413)
T ss_pred cchhhHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHH---HHHHHHHHHHHHHHhccHHHHHHHHH-hcccccccccch
Confidence 3334445566666666666554422 222111111110 01112335567899999888765443 3322
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 015006 265 --NPAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKS 301 (414)
Q Consensus 265 --dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~ 301 (414)
...-+-.+|.+|++|+...++.+|...++.|+...|.
T Consensus 214 ~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 214 YQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred hhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 1123567899999999999999999999999998876
No 488
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=22.73 E-value=82 Score=31.51 Aligned_cols=51 Identities=24% Similarity=0.482 Sum_probs=37.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 243 ACLLKLGECRKSIEACNKVLDANPAH-------VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 243 ~~~~kl~~~~~A~~~~~~al~~dp~~-------~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
..|.-+|++ +| ..+.++++|.. ...-|..|-||+.+++|.+|+..|..+|-
T Consensus 243 R~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 243 RMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 446668884 44 55667777743 12228899999999999999999887763
No 489
>COG4499 Predicted membrane protein [Function unknown]
Probab=22.45 E-value=6.1e+02 Score=25.27 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 015006 236 LLHLNVAACLLKLGECRKSIE-ACNKVLDANPAHVKGLYRRGMAYMALGEFEEAQR 290 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~-~~~~al~~dp~~~ka~~r~g~a~~~l~~~~eA~~ 290 (414)
++.+-+|..|........+-. .....|.+..+.--.+|+ .+...|+|++|+.
T Consensus 282 sv~Y~LA~SYV~~e~L~~~kkeNi~NnislkSd~~~llYW---i~~GRGe~~eAin 334 (434)
T COG4499 282 SVQYILAVSYVNLEDLTTTKKENILNNISLKSDDNYLLYW---IYSGRGEFKEAIN 334 (434)
T ss_pred HHHHHHHHHHhhccccchHHHHHHhhccccccchhHHHHH---HHhcCccHHHHhh
Confidence 455667777776655433321 122222333332333343 3567788888875
No 490
>PF13041 PPR_2: PPR repeat family
Probab=22.45 E-value=2.3e+02 Score=18.38 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 237 LHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 237 ~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
.|+-+-.+|.+.|++++|.+.+++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4555555666666666666666665543
No 491
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=4.5e+02 Score=26.50 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015006 236 LLHLNVAACLLKLGECRKSIEACNKVLDA 264 (414)
Q Consensus 236 ~~~~N~a~~~~kl~~~~~A~~~~~~al~~ 264 (414)
-+..|.|.||-.+++|++|+.+|+++|.+
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 34567777777777777777777776653
No 492
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=22.22 E-value=1.5e+02 Score=23.15 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=23.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 267 AHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 267 ~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
.+++.++..|.-..+.|+|++|...+++|-
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~ 41 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEAD 41 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567888888888889999999988777653
No 493
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=21.93 E-value=2.8e+02 Score=27.17 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 269 VKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 269 ~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
+-|+|+.|..+...+++-+|+..|+.|..
T Consensus 247 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~ 275 (353)
T cd09246 247 AEALYRAAKDLHEKEDIGEEIARLRAASD 275 (353)
T ss_pred HHHHHHHHHHhHHhcchHHHHHHHHHHHH
Confidence 45677777777788889999988887765
No 494
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=21.54 E-value=2e+02 Score=22.95 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=27.5
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 263 DANPAHVKGLYRRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 263 ~~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~a 295 (414)
-+...|++..+..|.-+.+.|+|++|...++.|
T Consensus 13 I~~aG~ArS~~~eAl~~Ak~g~f~~A~~~i~eA 45 (105)
T COG1447 13 ILHAGNARSKAYEALKAAKEGDFEEAEELIQEA 45 (105)
T ss_pred HHHcccHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345578999999999999999999998877765
No 495
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=21.26 E-value=7.5e+02 Score=24.38 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 015006 233 KRNLLHLNVAACLLKLGECRKSIEACNKVLD----AN--PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMK 297 (414)
Q Consensus 233 ~~~~~~~N~a~~~~kl~~~~~A~~~~~~al~----~d--p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~ 297 (414)
++..+-..+...|+..++|.+|+......++ +| +.-+..+.--.++|..+.+...|...+-.|-.
T Consensus 126 LRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 126 LRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 4556777889999999999999998877653 33 23455666667788888888888887766644
No 496
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.16 E-value=4.6e+02 Score=21.36 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 238 HLNVAACLLKLGECRKSIEACNKVLD--ANPAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 238 ~~N~a~~~~kl~~~~~A~~~~~~al~--~dp~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
|+.+-.-|.++-+ .+...+..... +--..+..|-..|..+...|++.+|.+.|++++
T Consensus 68 ylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 68 YLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4444444444444 67777766654 445678888888999999999999999999875
No 497
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=21.06 E-value=1.7e+02 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMM 296 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al 296 (414)
..+++.++--|.-..+.|+|++|.+.+++|-
T Consensus 12 aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~ 42 (97)
T cd00215 12 AGNARSKALEALKAAKEGDFAEAEELLEEAN 42 (97)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3678888888888899999999988877653
No 498
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=20.85 E-value=5.1e+02 Score=22.62 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015006 266 PAHVKGLYRRGMAYMALGEFEEAQRDFEMMMKVDKSSEPDATAALSKLKKQRQEVESKARKQFKGLF 332 (414)
Q Consensus 266 p~~~ka~~r~g~a~~~l~~~~eA~~~~~~al~l~P~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 332 (414)
|--..++|+-++-|-..-=...+...++...++||.--.++......-+.+.++...+.+..++++.
T Consensus 94 PIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le 160 (170)
T PLN00122 94 PIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLE 160 (170)
T ss_pred HHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666665544433444445555556666643222333333322333333334444444443
No 499
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=20.27 E-value=2.6e+02 Score=19.67 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 015006 272 LYRRGMAYMALGEFEEAQRDFEMM 295 (414)
Q Consensus 272 ~~r~g~a~~~l~~~~eA~~~~~~a 295 (414)
+...-..+..+|++++|.+++...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344445566666666666655544
Done!