BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015007
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 250 PILGFESDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTD 309
P+L ESD ++ + +++++ RR +R ++++EV L+ + + G G+W D
Sbjct: 506 PVLALESDALALVPVNE----KPKRTELSQRR-TRRPFSVTEVEALVSAVEEVGTGRWRD 560
Query: 310 IKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQKNKGEVDPKHAM 353
+K F ++SHRT +DL+DKW+ L+ AS + Q+ +GE P+ +
Sbjct: 561 VKLRSFENASHRTYVDLKDKWKTLVHTASISPQQRRGEPVPQELL 605
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 338
+R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+DKW+ L+ AS
Sbjct: 505 QRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHTASI 564
Query: 339 AHQKNKGEVDPKHAM 353
+ Q+ +GE P+ +
Sbjct: 565 SPQQRRGEPVPQELL 579
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 338
+R+ +R +T++EV L++ + G G+W D+K F + HRT +DL+DKW+ L+ AS
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 589
Query: 339 AHQKNKGEVDPKHAMRSLPKPVLCRIRELATIHPYPRVP 377
A Q+ +G P+ + + + A +H P VP
Sbjct: 590 APQQRRGAPVPQELLDRVLAAQAYWSEQQAKLHGDPPVP 628
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 271 RKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 330
RK K +R+ +R ++++EV L+ + + G G+W D+K F ++ HRT +DL+DKW
Sbjct: 515 RKTKRSEVAQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKW 574
Query: 331 RNLLR-ASYAHQKNKGEVDPKHAM 353
+ L+ A + Q+ +GE P+ +
Sbjct: 575 KTLVHTARISPQQRRGEPVPQELL 598
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 269 RVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRD 328
+ ++ + ++ +R+ +R ++++EV L+ + + G G+W D+K F + HRT +DL+D
Sbjct: 438 KFKRTEQQLAAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKD 497
Query: 329 KWRNLLR-ASYAHQKNKGEVDPKHAM 353
KW+ L+ A + Q+ +GE P+ +
Sbjct: 498 KWKTLVHTARISPQQRRGEPVPQELL 523
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASY 338
+R+ +R +T+SEV L+ + + G G+W D+K F+ +HRT +DL+DKW+ L+ A
Sbjct: 311 QRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHTAKI 370
Query: 339 AHQKNKGEVDPK 350
+ ++ +GE P+
Sbjct: 371 SARQRRGEPVPQ 382
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR-ASYAHQKNKG 345
++++EV L+ + + G G+W D+K F + HRT +DL+DKW+ L+ A + Q+ +G
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG 530
Query: 346 EVDPKHAM 353
E P+ +
Sbjct: 531 EPVPQELL 538
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 283 NQRM-WTLSEVMKLIDGISQFGVGKWTDIKR--LLFSSSSHRTPIDLRDKWRNL 333
NQ++ WT E L+ GI + G GKW +I R HR+ IDL+DKWRNL
Sbjct: 3 NQKLKWTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 283 NQRM-WTLSEVMKLIDGISQFGVGKWTDIKR--LLFSSSSHRTPIDLRDKWRNL 333
NQ++ WT E L+ G+ + G GKW +I R L S R+ IDL+DKWRNL
Sbjct: 3 NQKLKWTAEEEEALLAGVRKHGPGKWKNILRDPELAEQLSSRSNIDLKDKWRNL 56
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 333
R + ++ W E L G+ ++G G W+ I LL ++RT + L+D+WR +
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTM 427
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 333
R + ++ W E L G+ ++G G W+ I LL ++RT + L+D+WR +
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTM 427
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDI---KRLLFSSSSHRTPIDLRDKWRNLLRAS 337
RK + WT E L+ G GVG W I +R F ++R+P DL+D++R +L
Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHF---TNRSPNDLKDRFRTILPED 108
Query: 338 Y 338
Y
Sbjct: 109 Y 109
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRN 332
WT E ++L+D I Q+G G W DI + + + S+ + +K+ N
Sbjct: 74 WTAREEIRLLDAIEQYGFGNWEDISKHIETKSAEDAKEEYVNKFVN 119
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 287 WTLSEVMKLIDGISQFGVGKW-TDIKRLLFSSSSH-RTPIDLRDKWRNL 333
WT E L G+ + G GKW T +K FS + R+ +DL+DKWRN+
Sbjct: 8 WTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
>sp|O13493|MYB1_NEUCR Myb-like DNA-binding protein myb-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rca-1 PE=3 SV=2
Length = 324
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 275 SKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334
S + D+R+ W+ E +LI + G G W ++ R+L + RTP R++W L
Sbjct: 2 SNMPDQRRGP--WSAGEDQRLIKLVKDLGPGNWVNVARILGT----RTPKQCRERWHQNL 55
Query: 335 RASYAH 340
+ H
Sbjct: 56 KPGLNH 61
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 267 DDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDL 326
D + R+R + D + + WT E +L D ++ G+GKW+D+ +L+ +RT
Sbjct: 687 DVQCRERYCNVLDPQLTKIRWTPQEDKRLFDITNKVGIGKWSDVAKLM----ENRTDNQC 742
Query: 327 RDKWRNLLRAS 337
+W+ L ++S
Sbjct: 743 WRRWKQLNKSS 753
>sp|A6MW07|RR3_RHDSA 30S ribosomal protein S3, chloroplastic OS=Rhodomonas salina
GN=rps3 PE=3 SV=1
Length = 218
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 40/181 (22%)
Query: 95 VAVGMSDSSITALESECKNDSLEKMVNCE----LHGTFKSKCEYQAPDMEKCPSSHDMDR 150
V V +S + I+ +E K+D +E ++ + G S + D+ K + ++ R
Sbjct: 43 VKVNLSSAGISKVEIHRKSDQVELEIHTSRPGIIVGRSGSGIDTIKEDLRKIINKNNQIR 102
Query: 151 FD-----ELDSDDNVLLSSILSKCKKRVKSTVLGTKVKRLRKPTKRYIEESSDLKPGSLM 205
+ +D+D N++ I + +KR+ R+ T++ I+
Sbjct: 103 INVTELKNVDADANLIAEFIAQQLEKRIA----------FRRATRQAIQ----------- 141
Query: 206 RGQNVSTATLKDKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDS 265
R Q + +K +G G+++A W+R GR+ P+ +D D + ++
Sbjct: 142 RAQRANVQGIK------VQVSGRLNGAEIARSEWVREGRV----PLQTLRADIDYATKEA 191
Query: 266 D 266
D
Sbjct: 192 D 192
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 287 WTLSEVMKLIDGISQFGVGKW-TDIKRLLFSSS-SHRTPIDLRDKWRNL 333
WT E L G+ + G GKW T + ++S+ R+ +DL+DKWRN+
Sbjct: 8 WTPEEETALKAGVLKHGTGKWRTILSDPVYSTILKSRSNVDLKDKWRNI 56
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 256 SDDDIFSSDSDDDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDI-KRLL 314
SD+D +D+ S + +K + WT+ E + DG+ ++G G+W I ++
Sbjct: 639 SDEDELFTDAALTETSSNNSTVYGSKKQK--WTVQESEWIKDGVRKYGEGRWKTISEKYP 696
Query: 315 FSSSSHRTPIDLRDKWRNL 333
F +RT + ++D++R +
Sbjct: 697 F---QNRTSVQIKDRYRTM 712
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus
GN=Snapc4 PE=2 SV=2
Length = 1333
Score = 35.0 bits (79), Expect = 0.97, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGE 346
W E +LI I ++GVG W I S HR+ KW+ L R Q+ +G+
Sbjct: 456 WNAKEEQQLIQLIEKYGVGHWARIA----SELPHRSGSQCLSKWKILARKKQHLQRKRGQ 511
Query: 347 VDPKH 351
P+H
Sbjct: 512 -RPRH 515
>sp|P01104|MYB_AVIMB Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB
PE=1 SV=2
Length = 382
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 267 DDRVRKRKSKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDL 326
D + + R K+ + N+ WT E ++I+ + ++G +W+DI + L R
Sbjct: 4 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG----RIGKQC 59
Query: 327 RDKWRNLL 334
R++W N L
Sbjct: 60 RERWHNHL 67
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDI-KRLLFSSSSHRTPIDLRDKWRNL 333
WT+ E + DG+ ++G G W I K F +RT + ++D+WR +
Sbjct: 491 WTIEESEWVKDGVRKYGEGNWAAISKSYPF---VNRTAVMIKDRWRTM 535
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 217 DKHPKVTPCNGSSKGSQVASESWLRGGRLKKRSPILGFESDDDIFSSDSDDDRVRKRKSK 276
+K+PKV +S E+W+ +D++F + D +
Sbjct: 401 EKNPKVPKGKWNSSNGVEEKETWV---------------EEDELFQVQAAPDE--DSTTN 443
Query: 277 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDI-KRLLFSSSSHRTPIDLRDKWRNLLR 335
I ++K WT+ E + G+ ++G G W I K F +RT + ++D+WR + R
Sbjct: 444 ITKKQK----WTVEESEWVKAGVQKYGEGNWAAISKNYPF---VNRTAVMIKDRWRTMKR 496
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKR-----LLFSSSSHRTPIDLRDKWRNL 333
WT E L G+ + G GKW I L+ S R+ +DL+DKWRN+
Sbjct: 8 WTPEEEAALKAGVLKHGTGKWRTILSDTEFSLILKS---RSNVDLKDKWRNI 56
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 330
WT E L+D I Q+G G W D+ + +S RTP ++ D +
Sbjct: 70 WTSREEQSLLDAIEQYGFGNWEDMAAHVGAS---RTPQEVMDHY 110
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335
R+ ++ W E L G+ ++G G W I L ++RT + L+D+WR + R
Sbjct: 364 RRKRQTWLWEEDRILKCGVKKYGEGNWAKI--LSHYKFNNRTSVMLKDRWRTMKR 416
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 330
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPTEVMEHY 110
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 330
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHY 110
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKW 330
WT E L+D I QFG G W D+ + +S RTP ++ + +
Sbjct: 70 WTSREEQLLLDAIEQFGFGNWEDMAAHVGAS---RTPQEVMEHY 110
>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1
Length = 198
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335
WT+ E + LI+ IS G G W I R S+ RT R +W N LR
Sbjct: 18 WTMEEDLILINFISNHGEGVWNTIAR---SAGLKRTGKSCRLRWLNYLR 63
>sp|C0QRE6|SYC_PERMH Cysteine--tRNA ligase OS=Persephonella marina (strain DSM 14350 /
EX-H1) GN=cysS PE=3 SV=1
Length = 487
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 309 DIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 358
D+ RLL S +R+P+D W + A+++ KG +D ++ LP+
Sbjct: 287 DVLRLLVLSVHYRSPLDF--SWEKMEETKKAYERLKGAIDEYEILKKLPE 334
>sp|Q05950|REB1_KLULA DNA-binding protein REB1 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=REB1 PE=3 SV=2
Length = 595
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 305 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVL 361
G+W++I ++L R P D RD+WRN ++ NK V+ + ++++ +L
Sbjct: 358 GQWSNIGKVL-----GRMPEDCRDRWRNYVKCGPNRAANKWSVEEEEKLKNVIHQML 409
>sp|P21538|REB1_YEAST DNA-binding protein REB1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=REB1 PE=1 SV=2
Length = 810
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGE 346
WT E +L ++ G+W +I + L R P D RD+WRN ++ N+
Sbjct: 478 WTAEEEQELAKLCAE-KEGQWAEIGKTLG-----RMPEDCRDRWRNYVKCGTNRASNRWS 531
Query: 347 VDPKHAMRSLPKPVLCRIRELAT-IHP 372
V+ + ++ + +L ++ + +HP
Sbjct: 532 VEEEELLKKVISDMLEEAQQQQSQLHP 558
>sp|Q54X08|MYBV_DICDI Myb-like protein V OS=Dictyostelium discoideum GN=mybV PE=4 SV=2
Length = 803
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 286 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKG 345
+WT E LI + G +W IK +S+S R P L+DK R+ LR Y KN
Sbjct: 333 LWTDEECRSLIKAVMIIG-HRWIKIKEDYYSTS-KRKPSQLKDKMRS-LRKRYGDIKN-- 387
Query: 346 EVDPKHAMRSLPKPVLCRIRELATI 370
A+ K + I +LA +
Sbjct: 388 -----IAIAYFTKAEIIEIEKLAVL 407
>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1
Length = 205
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335
WT+ E + LI+ I+ G G W + R S+ RT R +W N LR
Sbjct: 18 WTMEEDLILINYIANHGEGVWNSLAR---SAGLKRTGKSCRLRWLNYLR 63
>sp|Q6XJG8|RPN1B_ARATH 26S proteasome non-ATPase regulatory subunit 2 1B OS=Arabidopsis
thaliana GN=RPN1B PE=2 SV=1
Length = 891
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 3 YIRGGAGESGLDSFTTQGEDDLKLEVLDGLLDDIDEVDDFHAANDLSTVCDDFLLDIE 60
Y+R AGE + QGE+ ++ L+D + ++ FH ++ T D L+D+E
Sbjct: 154 YVRNLAGEIAKEYTIRQGEES----SIEDLMDLVQQIVSFHMKHNAETEAVDLLMDVE 207
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,571,038
Number of Sequences: 539616
Number of extensions: 6880626
Number of successful extensions: 15444
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 15370
Number of HSP's gapped (non-prelim): 119
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)