Query 015007
Match_columns 414
No_of_seqs 150 out of 382
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 02:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015007.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015007hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 2.1E-10 4.4E-15 83.5 5.5 48 284-334 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 1.6E-08 3.4E-13 69.7 5.7 47 285-335 2-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 4.9E-08 1.1E-12 66.6 5.4 45 286-334 1-45 (45)
4 PLN03212 Transcription repress 98.6 1.2E-07 2.6E-12 91.9 6.8 54 282-338 23-76 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.4 3.3E-07 7.3E-12 68.6 4.8 44 287-335 1-44 (60)
6 PLN03091 hypothetical protein; 98.3 1.3E-06 2.8E-11 90.6 6.1 53 283-338 13-65 (459)
7 KOG0048 Transcription factor, 97.9 2.6E-05 5.6E-10 73.8 7.0 53 284-339 9-61 (238)
8 PLN03212 Transcription repress 97.9 1.5E-05 3.3E-10 77.6 5.5 50 283-337 77-126 (249)
9 PLN03091 hypothetical protein; 97.8 3.8E-05 8.2E-10 80.0 5.9 48 284-336 67-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.7 6.1E-05 1.3E-09 58.4 5.2 45 282-329 1-49 (57)
11 PF13837 Myb_DNA-bind_4: Myb/S 97.3 0.00023 5E-09 56.3 3.7 54 284-337 1-67 (90)
12 KOG0457 Histone acetyltransfer 97.3 0.00053 1.2E-08 71.3 6.9 48 286-337 74-121 (438)
13 KOG0048 Transcription factor, 96.8 0.0018 3.9E-08 61.5 5.5 50 283-337 61-110 (238)
14 PF13325 MCRS_N: N-terminal re 96.6 0.0024 5.2E-08 60.8 4.4 62 283-344 72-136 (199)
15 PF13873 Myb_DNA-bind_5: Myb/S 96.5 0.0068 1.5E-07 47.6 5.8 53 285-337 3-72 (78)
16 KOG0051 RNA polymerase I termi 96.4 0.0053 1.1E-07 66.4 6.1 51 283-339 383-433 (607)
17 PF09111 SLIDE: SLIDE; InterP 96.0 0.0077 1.7E-07 52.9 3.8 55 283-337 48-113 (118)
18 KOG0049 Transcription factor, 95.9 0.0093 2E-07 65.4 5.1 51 283-337 359-409 (939)
19 KOG0049 Transcription factor, 95.8 0.0083 1.8E-07 65.8 3.8 53 280-336 408-460 (939)
20 COG5114 Histone acetyltransfer 95.0 0.11 2.3E-06 53.5 8.7 70 286-365 65-136 (432)
21 PLN03142 Probable chromatin-re 93.2 0.14 3E-06 58.8 5.8 55 283-337 925-987 (1033)
22 KOG4282 Transcription factor G 92.2 0.27 5.9E-06 48.7 5.7 54 284-337 54-116 (345)
23 COG5147 REB1 Myb superfamily p 91.1 0.12 2.5E-06 55.5 2.0 49 283-337 290-338 (512)
24 KOG0050 mRNA splicing protein 90.9 0.36 7.9E-06 52.2 5.3 50 284-337 7-56 (617)
25 KOG1279 Chromatin remodeling f 90.7 0.32 6.9E-06 52.2 4.7 48 282-334 251-298 (506)
26 COG5259 RSC8 RSC chromatin rem 88.8 0.48 1E-05 50.7 4.2 46 284-334 279-324 (531)
27 COG5147 REB1 Myb superfamily p 88.8 0.6 1.3E-05 50.3 4.9 79 281-376 17-96 (512)
28 KOG0051 RNA polymerase I termi 87.5 1.3 2.8E-05 48.7 6.5 52 282-337 434-510 (607)
29 PF08914 Myb_DNA-bind_2: Rap1 86.6 1.5 3.2E-05 35.1 4.8 50 284-336 2-59 (65)
30 PF12776 Myb_DNA-bind_3: Myb/S 84.5 1.7 3.6E-05 34.8 4.3 50 286-335 1-63 (96)
31 KOG2656 DNA methyltransferase 80.5 1 2.2E-05 47.4 2.1 52 285-337 131-188 (445)
32 PF08074 CHDCT2: CHDCT2 (NUC03 80.2 1.3 2.7E-05 42.0 2.4 48 283-330 2-58 (173)
33 PF04504 DUF573: Protein of un 77.9 4.7 0.0001 34.3 5.0 54 283-336 3-64 (98)
34 COG5118 BDP1 Transcription ini 73.3 5.7 0.00012 42.2 5.1 57 275-337 357-413 (507)
35 KOG0384 Chromodomain-helicase 61.1 4.5 9.7E-05 47.9 1.7 55 283-337 1132-1194(1373)
36 KOG0050 mRNA splicing protein 42.6 29 0.00063 38.3 4.0 46 284-335 59-104 (617)
37 cd01187 INT_SG4 INT_SG4, DNA b 40.3 70 0.0015 29.7 5.7 82 283-368 98-187 (299)
38 PF09420 Nop16: Ribosome bioge 38.7 70 0.0015 29.2 5.3 52 282-334 112-163 (164)
39 smart00595 MADF subfamily of S 34.7 40 0.00086 26.7 2.8 25 306-335 29-53 (89)
40 cd02135 Arsenite_oxidase Nitro 29.6 62 0.0013 27.6 3.3 35 349-383 11-45 (160)
41 PF07128 DUF1380: Protein of u 26.1 75 0.0016 29.4 3.4 19 355-373 88-106 (139)
42 PLN03162 golden-2 like transcr 23.6 1.9E+02 0.004 31.3 6.0 54 280-335 233-291 (526)
43 PF00984 UDPG_MGDP_dh: UDP-glu 23.5 22 0.00048 30.0 -0.5 44 44-94 21-64 (96)
44 KOG1194 Predicted DNA-binding 23.4 1.4E+02 0.003 32.9 5.1 50 283-337 186-235 (534)
45 KOG3554 Histone deacetylase co 23.1 46 0.001 36.6 1.6 50 282-332 283-332 (693)
46 PF10545 MADF_DNA_bdg: Alcohol 21.2 94 0.002 23.7 2.6 27 306-335 28-54 (85)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.08 E-value=2.1e-10 Score=83.49 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
+.+||++|++.|+++|++||.++|..|...+. .+||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999988999999876 5999999999999985
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.77 E-value=1.6e-08 Score=69.73 Aligned_cols=47 Identities=34% Similarity=0.639 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015007 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
.+||.+|++.|+.+|.+||.++|..|...++ +||..+|+++|+++++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 5799999999999999999779999998764 9999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.66 E-value=4.9e-08 Score=66.55 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015007 286 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 286 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
+||.+|++.|+.++++||.++|..|..... .||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999889999998764 699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.56 E-value=1.2e-07 Score=91.92 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc
Q 015007 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~ 338 (414)
-++.+||+||++.|+..|++||..+|+.|.+... .+||..+|++||.|.++...
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I 76 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSV 76 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhc
Confidence 3467899999999999999999999999987642 48999999999999997554
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.42 E-value=3.3e-07 Score=68.58 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015007 287 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 287 WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
||.+|++.|+.+|++||. +|+.|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999998875 37999999999999554
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.26 E-value=1.3e-06 Score=90.62 Aligned_cols=53 Identities=26% Similarity=0.537 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 338 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~ 338 (414)
++.+||+||++.|++.|++||.++|+.|.+... .+||+.+|++||.|.+.-..
T Consensus 13 rKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~I 65 (459)
T PLN03091 13 RKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPDL 65 (459)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCcc
Confidence 456899999999999999999999999987643 48999999999999887553
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=97.91 E-value=2.6e-05 Score=73.84 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhccc
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 339 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~ 339 (414)
+-+||+||++.|++-|++||.|+|..|.+...- .|+...|+-+|-|.++-.+-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCCCcc
Confidence 579999999999999999999999999988752 99999999999999986543
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.90 E-value=1.5e-05 Score=77.61 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
++.+||.||++.|++.+.+||. +|+.|...+ .+||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 3568999999999999999996 999999754 5999999999999988754
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.76 E-value=3.8e-05 Score=79.98 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
+.+||.||++.|++.+++||. +|+.|...+ .+||..++|.+|..++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999754 599999999999998864
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.72 E-value=6.1e-05 Score=58.41 Aligned_cols=45 Identities=18% Similarity=0.375 Sum_probs=38.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhcCCCCCC-ChhhHHHH
Q 015007 282 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHR-TPIDLRDK 329 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~W---k~Il~~~f~if~~R-T~VDLKDK 329 (414)
|++..||+||-..+++||+.||.|+| +.|+..+. ..| |..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHH
Confidence 46789999999999999999999999 99998764 244 88888754
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.32 E-value=0.00023 Score=56.30 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 284 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeK------yG~-----G--~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
|..||.+|+.+|++.+.. |+. + -|..|.......=-.||+.+|++||.||.+.-
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999887 221 1 49999987522112899999999999999743
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00053 Score=71.35 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 286 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 286 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
-||.+|+..|++|++.||.|||.+|.+... .||.-++|+.|.++.--+
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhcC
Confidence 599999999999999999999999998875 799999999999988544
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.85 E-value=0.0018 Score=61.48 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
++..||+||++.|+++...||. +|+.|.+.. .+||--++|.-|..-+|..
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~L----PGRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRL----PGRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhC----CCcCHHHHHHHHHHHHHHH
Confidence 3678999999999999999997 999999876 4999999999998877543
No 14
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.61 E-value=0.0024 Score=60.78 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCC-CCCChhhHHHHHHHHhhhcccccccC
Q 015007 283 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKNK 344 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG--~G~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlKas~~p~~~r 344 (414)
.+-+||.+|++.|........ ...+.+|+..+.++| ..||+.+|.+.|+.|.++.-++.+..
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSV 136 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcccc
Confidence 567999999999999877764 468999999998888 77999999999999999887765543
No 15
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.51 E-value=0.0068 Score=47.57 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhcCCC-CCCChhhHHHHHHHHhhhc
Q 015007 285 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKy-----G~-----------G~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlKas 337 (414)
..||.+|.+.|++-|++| |. .-|..|...+-... ..||..+||.+|.||....
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~ 72 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKA 72 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence 469999999999999998 31 25999999874332 4899999999999998643
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.41 E-value=0.0053 Score=66.42 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhccc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 339 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~ 339 (414)
.+-.||++|.+.|..-|.++|. .|+.|-+.. +|.+.+|+|+||+.++.+..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc
Confidence 4567999999999999999996 999999876 79999999999999998754
No 17
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.97 E-value=0.0077 Score=52.92 Aligned_cols=55 Identities=24% Similarity=0.487 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~---G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlKas 337 (414)
..+.||.+|+..|+--|.+||. |.|..|+... |+. |..||+.+|+.+-..|+++-
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 9999999873 343 38999999999999999863
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.94 E-value=0.0093 Score=65.43 Aligned_cols=51 Identities=24% Similarity=0.577 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
++-+||.+|+..|+.+|++||.--|.+|...+ .+|+-.||+|+|-|.+..+
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~v----PnRSdsQcR~RY~nvL~~s 409 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAV----PNRSDSQCRERYTNVLNRS 409 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhc----CCccHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999765 5999999999999887543
No 19
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.76 E-value=0.0083 Score=65.78 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=44.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015007 280 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 280 rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
++-+.-.||..|++.|+..|++||.|+|.+|.... .+||..++..+-+.++.+
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHHH
Confidence 34456779999999999999999999999999765 489998887777666643
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.03 E-value=0.11 Score=53.53 Aligned_cols=70 Identities=20% Similarity=0.386 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcc-cccccCCCCCcccccCCCCHHH-HHH
Q 015007 286 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY-AHQKNKGEVDPKHAMRSLPKPV-LCR 363 (414)
Q Consensus 286 ~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~-~p~~~r~~~~rK~~~~~iP~~l-L~R 363 (414)
-|+..|+-.|+++.+..|.|+|.+|.+... .|+.-++|+.|-.|.--+. +|...-.. ..++|++- |+|
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~es~~ypl~~i~~------~~~v~q~~f~~q 134 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYDESKYYPLPDITQ------NIHVPQDEFLEQ 134 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHhhccccccccccc------CCCCchHHHHHH
Confidence 599999999999999999999999997654 7999999999987775332 34332222 24577654 444
Q ss_pred HH
Q 015007 364 IR 365 (414)
Q Consensus 364 Vr 365 (414)
-+
T Consensus 135 rr 136 (432)
T COG5114 135 RR 136 (432)
T ss_pred HH
Confidence 33
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=93.20 E-value=0.14 Score=58.76 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------cCC-CCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~-------f~i-f~~RT~VDLKDKWRNLlKas 337 (414)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.+-.+|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999998763 444 48999999999999999864
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=92.22 E-value=0.27 Score=48.70 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 284 QRMWTLSEVMKLIDGISQF----GVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKy----G~G~-----Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
...|+.+|+.+|++.-.+. ..|+ |..|.......=-.||+.+||.||.||.|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 6789999999999887643 4455 9999985422224899999999999999753
No 23
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.12 E-value=0.12 Score=55.47 Aligned_cols=49 Identities=35% Similarity=0.716 Sum_probs=44.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
.+..||.+|+..|..-|.++|. .|+.|.... +|-+.||.|+||+.++.+
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g 338 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCG 338 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhcccc
Confidence 4667999999999999999995 999999764 799999999999999987
No 24
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.86 E-value=0.36 Score=52.20 Aligned_cols=50 Identities=22% Similarity=0.548 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
---|+..|++.|..+|.+||...|+.|...| +..|+-+|+-+|--.+--+
T Consensus 7 ggvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ldp~ 56 (617)
T KOG0050|consen 7 GGVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLDPA 56 (617)
T ss_pred cceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhCHH
Confidence 3469999999999999999999999999887 4789999999998665433
No 25
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=90.69 E-value=0.32 Score=52.15 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=42.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015007 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
..+..||.+|.-.|++||++||. .|.+|...-. .||.-||=.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 45678999999999999999997 9999997754 899999999998764
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=88.80 E-value=0.48 Score=50.72 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
-.+||.+|.-.|++||+.||. .|.+|..+.. .+|.-||=-|+-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg----tKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVG----TKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhC----CCCHHHHHHHHHcCC
Confidence 458999999999999999997 9999998864 899999987776653
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=88.79 E-value=0.6 Score=50.26 Aligned_cols=79 Identities=18% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhcccccccCCCCCcccccCCCCHHH
Q 015007 281 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPV 360 (414)
Q Consensus 281 RK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~~l 360 (414)
.++.-.|+..|++.|..+|++||..+|+.|...|. .||+-|++-+|-|.+. |+..++. .-.+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~ln----p~lk~~~---------~~~ee 79 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLN----PQLKKKN---------WSEEE 79 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhc----hhccccc---------ccHHH
Confidence 33455899999999999999999999999998874 5999999999944432 2222222 46777
Q ss_pred HHHHHHhHhhCCC-CCC
Q 015007 361 LCRIRELATIHPY-PRV 376 (414)
Q Consensus 361 L~RVreLa~~hpy-p~~ 376 (414)
..++..|+..+++ |..
T Consensus 80 d~~li~l~~~~~~~wst 96 (512)
T COG5147 80 DEQLIDLDKELGTQWST 96 (512)
T ss_pred HHHHHHHHHhcCchhhh
Confidence 8888888888877 653
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=87.50 E-value=1.3 Score=48.65 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015007 282 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVe-------Ky------------------G~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
+.+.+||.||++.|++.|+ +| -.-+|..|-+.. ..|+.++|+-||-.|+..
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 4678999999999999996 44 123899999844 599999999999999964
Q ss_pred c
Q 015007 337 S 337 (414)
Q Consensus 337 s 337 (414)
.
T Consensus 510 ~ 510 (607)
T KOG0051|consen 510 P 510 (607)
T ss_pred H
Confidence 3
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=86.56 E-value=1.5 Score=35.14 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CCC--hHHHHHHhcCCCCCCChhhHHHHHHHHhhh
Q 015007 284 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKy---G---~G~--Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa 336 (414)
|.++|.+|+.+|++=|.++ | .|+ |+++...+. ..+|-.-++|+|+--++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 5689999999999999654 3 343 888776653 489999999999766553
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=84.48 E-value=1.7 Score=34.82 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHhhc---C----CC-----ChHHHHHHhcCCC-CCCChhhHHHHHHHHhh
Q 015007 286 MWTLSEVMKLIDGISQF---G----VG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 286 ~WT~EEveaLv~GVeKy---G----~G-----~Wk~Il~~~f~if-~~RT~VDLKDKWRNLlK 335 (414)
.||+++++.|++.+... | .| .|..|...+...+ ..-|..+||.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 49999999999988544 2 22 4888888764333 45678999999999987
No 31
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=80.50 E-value=1 Score=47.44 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCC-CCCChhhHHHHH----HHHhhhc
Q 015007 285 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSS-SHRTPIDLRDKW----RNLLRAS 337 (414)
Q Consensus 285 r~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f-~if-~~RT~VDLKDKW----RNLlKas 337 (414)
..||.+|.+.|.+-.++|-. +|--|.+.|- ..| ..||--|||||| |+|+++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 56999999999999999998 9999998872 224 459999999999 5555554
No 32
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.17 E-value=1.3 Score=41.98 Aligned_cols=48 Identities=25% Similarity=0.586 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCC--CCCC------hhhHHHHH
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRT------PIDLRDKW 330 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~-f~if--~~RT------~VDLKDKW 330 (414)
...-|-..-+=+|+.||-.||-|+|.+|..+- |.++ .=++ ..++|.|+
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 34568888888999999999999999999984 4442 1122 25888776
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=77.88 E-value=4.7 Score=34.26 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCC---hHHHHHHhcCCC-CCCChhhHHHHHHHHhhh
Q 015007 283 NQRMWTLSEVMKLIDGISQF----GVGK---WTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 336 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKy----G~G~---Wk~Il~~~f~if-~~RT~VDLKDKWRNLlKa 336 (414)
-.|.||++++-.|++|+--| |... |..........+ ..=+..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999877 7554 444333322222 223778999999999963
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=73.28 E-value=5.7 Score=42.16 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=47.7
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 275 SKIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 275 ~~~~~rRK~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
.+.++ ++..-+||.+|.+.+.+++..+|. -+..|...|+ +|...++|-||.+--|..
T Consensus 357 ~t~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP----~R~RkqIKaKfi~Eek~n 413 (507)
T COG5118 357 STFGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP----NRERKQIKAKFIKEEKVN 413 (507)
T ss_pred ccccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC----chhHHHHHHHHHHHhhhC
Confidence 33444 567789999999999999999998 8999987764 899999999998877643
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=61.13 E-value=4.5 Score=47.91 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCC--------CCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSS--------HRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~--------~RT~VDLKDKWRNLlKas 337 (414)
.---|..+++..|+-||-+||.|+|..|+.+-.--|. -=++++|.-+=.-|++..
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~~ 1194 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSLL 1194 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHHH
Confidence 4556999999999999999999999999987421121 334567777766666543
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=42.57 E-value=29 Score=38.31 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015007 284 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 284 rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
+--|+.+|++.|+....-+-. .|..|.... +||+-+|-.+|-||+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 346999999999999988876 999999764 8999999999999984
No 37
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=40.27 E-value=70 Score=29.75 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhcCCCCCCChhhHHHHHHHHhhh-cccc-cccCCCCCcccccC
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-SYAH-QKNKGEVDPKHAMR 354 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G------~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKa-s~~p-~~~r~~~~rK~~~~ 354 (414)
..+.||.+|+..|++++..+... .|..|...... ..-|..-=+.=+|..+-.. ..+. ...++ .+....
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~r~v 173 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKSRLV 173 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCccEE
Confidence 34579999999999999877643 25555544211 1456555555555554321 1111 11111 233468
Q ss_pred CCCHHHHHHHHHhH
Q 015007 355 SLPKPVLCRIRELA 368 (414)
Q Consensus 355 ~iP~~lL~RVreLa 368 (414)
|+|+++.+-+.+..
T Consensus 174 pl~~~l~~~l~~~~ 187 (299)
T cd01187 174 PLHASTRAALRDYL 187 (299)
T ss_pred eCCHHHHHHHHHHH
Confidence 99999888777653
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=38.67 E-value=70 Score=29.17 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHh
Q 015007 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 334 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLl 334 (414)
++.++=|..|++++..-|++||. .+..+..+-.-+.--.|.-+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 46778999999999999999996 78777776442234679999998887654
No 39
>smart00595 MADF subfamily of SANT domain.
Probab=34.66 E-value=40 Score=26.71 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=20.8
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015007 306 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 306 ~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
-|..|...... |..+|+-||+||-.
T Consensus 29 aW~~Ia~~l~~-----~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELGL-----SVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHCc-----CHHHHHHHHHHHHH
Confidence 59999887642 99999999999974
No 40
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=29.57 E-value=62 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.6
Q ss_pred cccccCCCCHHHHHHHHHhHhhCCCCCCcCCCccC
Q 015007 349 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 383 (414)
Q Consensus 349 rK~~~~~iP~~lL~RVreLa~~hpyp~~~~~~~~~ 383 (414)
|+....|+|.+.|.+|.+.|..-|-+.+.++-+|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 44445679999999999999999988887776665
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=26.15 E-value=75 Score=29.43 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHhHhhCCC
Q 015007 355 SLPKPVLCRIRELATIHPY 373 (414)
Q Consensus 355 ~iP~~lL~RVreLa~~hpy 373 (414)
.+|.++|++|..+|+..=+
T Consensus 88 tVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 88 TVPADLLERVLRLAEQALW 106 (139)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 4899999999999987654
No 42
>PLN03162 golden-2 like transcription factor; Provisional
Probab=23.64 E-value=1.9e+02 Score=31.33 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=40.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCChhhHH---HHHHHHhh
Q 015007 280 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 335 (414)
Q Consensus 280 rRK~rr~WT~EEveaLv~GVeKyG~G--~Wk~Il~~~f~if~~RT~VDLK---DKWRNLlK 335 (414)
++|+|..||.|=-+.++++|++.|.- .=+.|++... ..+=|.-++| .|||..+|
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHHHHhcc
Confidence 46788899999999999999999943 3456776642 3455665555 67887765
No 43
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=23.53 E-value=22 Score=30.03 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=27.4
Q ss_pred ccCcccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCCc
Q 015007 44 AANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGSN 94 (414)
Q Consensus 44 ~~~~~s~ac~~~~ld~~~a~~~~~l~~gp~~~s~l~nssses~spg~sgs~ 94 (414)
-.|+|+..|+.+-+| +.+.+.-+...|..+.++- -++|||+|+-
T Consensus 21 f~Nel~~lce~~giD--~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~C 64 (96)
T PF00984_consen 21 FANELARLCEKLGID--VYEVIEAANTDPRIGPHYL-----RPGPGFGGSC 64 (96)
T ss_dssp HHHHHHHHHHHHTSB--HHHHHHHHHTSTTTTSSS------S-SSS--SSC
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHccCcccccccC-----CCCCCCCCcc
Confidence 468899999998655 4555566666788763222 4567888874
No 44
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=23.38 E-value=1.4e+02 Score=32.85 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHHhhhc
Q 015007 283 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 337 (414)
Q Consensus 283 ~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRNLlKas 337 (414)
-+..||.||.-.|-++.+.||. +..+|.+..+ +|+---|-.=|.++.|..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP----~rsLaSlvqyYy~~KK~~ 235 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIRQALP----HRSLASLVQYYYSWKKTR 235 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHHHHcc----CccHHHHHHHHHHHHHHh
Confidence 3557999999999999999998 9999998764 666666666666665544
No 45
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=23.09 E-value=46 Score=36.57 Aligned_cols=50 Identities=16% Similarity=0.420 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHH
Q 015007 282 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRN 332 (414)
Q Consensus 282 K~rr~WT~EEveaLv~GVeKyG~G~Wk~Il~~~f~if~~RT~VDLKDKWRN 332 (414)
-.---||..|...+-++++|||. ...+|..+|.+--.-+.-|.-.=-|++
T Consensus 283 DemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyYYmwKt 332 (693)
T KOG3554|consen 283 DEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYYYMWKT 332 (693)
T ss_pred hhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 34567999999999999999998 888998887432233344444333433
No 46
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=21.23 E-value=94 Score=23.65 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHHhh
Q 015007 306 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 335 (414)
Q Consensus 306 ~Wk~Il~~~f~if~~RT~VDLKDKWRNLlK 335 (414)
-|..|...+.. .-+..+|+.+|++|..
T Consensus 28 aw~~Ia~~l~~---~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELGK---EFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHcc---chhHHHHHHHHHHHHH
Confidence 48888877642 3457789999999885
Done!