Citrus Sinensis ID: 015008

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
ccccccEEcccEEEEccccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccHHHHHHHccEEEEEcEEccccccccccccccEEEEEcccccccccccEEEccccEEEEEEEEccccccEEEEEEEEcccccEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHcccccccccEEEcccccEEEEEccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccc
cccccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEccccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccc
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYfdlglpnrdatddkVTVESAEATLKYNVAIkcatitpdeARVKEFVLKQMwkspngtirnilngtvfrepiicknvprlipgwtkpicigrhafgdqyratdtviqgpgklklvfvpegkdekteLEVYNFTGEGGVALSMYNTDESIRAFAEASMNtayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGgyvwacknydgdvqsdFLAQGFGSLGLMTSvlvcpdgktieaeaahgtvtrhyrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGtvesgkmtKDLALIIHGskmtrehylnTEEFIDAVADDLRARLSGKA
mafqkikvanpivemdgdeMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESaeatlkynvaikcatitpDEARVKEFVLkqmwkspngtirnilngtvfrepiICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTayqkkwplylSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYrvhqkggetstnSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIgtvesgkmtkdLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
*******VANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVAD**********
***QK*KVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS***
MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
***QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRAR*****
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MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query414 2.2.26 [Sep-21-2011]
P50218415 Isocitrate dehydrogenase N/A no 0.990 0.987 0.921 0.0
P50217416 Isocitrate dehydrogenase N/A no 0.990 0.985 0.919 0.0
Q06197413 Isocitrate dehydrogenase yes no 0.992 0.995 0.905 0.0
Q40345433 Isocitrate dehydrogenase N/A no 0.995 0.951 0.900 0.0
P33198421 Isocitrate dehydrogenase yes no 0.975 0.959 0.697 1e-171
Q04467452 Isocitrate dehydrogenase yes no 0.975 0.893 0.695 1e-171
Q4R502452 Isocitrate dehydrogenase N/A no 0.975 0.893 0.697 1e-171
P48735452 Isocitrate dehydrogenase yes no 0.975 0.893 0.697 1e-171
P54071452 Isocitrate dehydrogenase yes no 0.975 0.893 0.695 1e-170
P56574452 Isocitrate dehydrogenase yes no 0.975 0.893 0.692 1e-170
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function desciption
 Score =  800 bits (2066), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/410 (92%), Positives = 392/410 (95%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           M F KIKV NPIVEMDGDEMTRV WKSIKDKLI PFLELDIKYFDLGLP+RDATDDKVTV
Sbjct: 1   MTFDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEAT KYNVAIKCATITPDEARVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+P
Sbjct: 61  ESAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATDTVIQG GKLKLVFVPEG DEKTE EVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDES+R+FAEASMN AYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESVRSFAEASMNMAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           +E AGIWYEHRLIDDM AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 YEEAGIWYEHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 360
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEK
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEK 360

Query: 361 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 410
           LEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct: 361 LEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410
May supply 2-oxoglutarate for amino acid biosynthesis and ammonia assimilation.
Nicotiana tabacum (taxid: 4097)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
5764653414 NADP-isocitrate dehydrogenase [Citrus li 1.0 1.0 0.985 0.0
213493066414 NADP-dependent isocitrate dehydrogenase 1.0 1.0 0.934 0.0
224079726414 predicted protein [Populus trichocarpa] 1.0 1.0 0.934 0.0
255575226413 NADP-specific isocitrate dehydrogenase, 0.992 0.995 0.946 0.0
3811007412 NADP specific isocitrate dehydrogenase [ 0.992 0.997 0.936 0.0
2623962412 isocitrate dehydrogenase (NADP+) [Apium 0.992 0.997 0.931 0.0
82941453416 NADP-isocitrate dehydrogenase [Codonopsi 1.0 0.995 0.927 0.0
1750380416 NADP-isocitrate dehydrogenase [Eucalyptu 1.0 0.995 0.925 0.0
269994009416 NADP-dependent isocitrate dehydrogenase 1.0 0.995 0.920 0.0
15982950414 NADP-dependent isocitrate dehydrogenase 0.997 0.997 0.924 0.0
>gi|5764653|gb|AAD51361.1|AF176669_1 NADP-isocitrate dehydrogenase [Citrus limon] Back     alignment and taxonomy information
 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/414 (98%), Positives = 413/414 (99%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV
Sbjct: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIR+FAEASMNTAYQKKWPLYLSTKNTILK YDG+FKDIFQEVYEANWKSK
Sbjct: 181 ALSMYNTDESIRSFAEASMNTAYQKKWPLYLSTKNTILKNYDGKFKDIFQEVYEANWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACK+YDG+VQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKDYDGNVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 360
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 360

Query: 361 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 414
           LEAAC+GTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA
Sbjct: 361 LEAACVGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLSGKA 414

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|213493066|dbj|BAG84436.1| NADP-dependent isocitrate dehydrogenase [Passiflora edulis] Back     alignment and taxonomy information
>gi|224079726|ref|XP_002305928.1| predicted protein [Populus trichocarpa] gi|222848892|gb|EEE86439.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255575226|ref|XP_002528517.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223532077|gb|EEF33886.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|3811007|dbj|BAA34112.1| NADP specific isocitrate dehydrogenase [Daucus carota] Back     alignment and taxonomy information
>gi|2623962|emb|CAA73139.1| isocitrate dehydrogenase (NADP+) [Apium graveolens] Back     alignment and taxonomy information
>gi|82941453|dbj|BAE48792.1| NADP-isocitrate dehydrogenase [Codonopsis lanceolata] Back     alignment and taxonomy information
>gi|1750380|gb|AAB39248.1| NADP-isocitrate dehydrogenase [Eucalyptus globulus] Back     alignment and taxonomy information
>gi|269994009|dbj|BAI50641.1| NADP-dependent isocitrate dehydrogenase [Eucalyptus grandis x Eucalyptus urophylla] Back     alignment and taxonomy information
>gi|15982950|gb|AAL11503.1|AF367443_1 NADP-dependent isocitrate dehydrogenase [Prunus persica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query414
TAIR|locus:2009759410 cICDH "cytosolic NADP+-depende 0.987 0.997 0.890 2.4e-202
TAIR|locus:2020128416 ICDH "isocitrate dehydrogenase 0.992 0.987 0.866 7.6e-199
TAIR|locus:2222672485 AT5G14590 [Arabidopsis thalian 0.975 0.832 0.797 5e-179
ZFIN|ZDB-GENE-031006-1429 idh1 "isocitrate dehydrogenase 0.987 0.953 0.690 3.7e-158
UNIPROTKB|F1PAM3422 IDH2 "Isocitrate dehydrogenase 0.975 0.957 0.697 1.4e-156
UNIPROTKB|F1SK00413 IDH2 "Isocitrate dehydrogenase 0.975 0.978 0.697 1.8e-156
UNIPROTKB|P33198421 IDH2 "Isocitrate dehydrogenase 0.975 0.959 0.697 1.8e-156
UNIPROTKB|P48735452 IDH2 "Isocitrate dehydrogenase 0.975 0.893 0.697 8e-156
UNIPROTKB|Q4R502452 IDH2 "Isocitrate dehydrogenase 0.975 0.893 0.697 8e-156
ZFIN|ZDB-GENE-031118-95449 idh2 "isocitrate dehydrogenase 0.990 0.913 0.690 8e-156
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1958 (694.3 bits), Expect = 2.4e-202, P = 2.4e-202
 Identities = 366/411 (89%), Positives = 394/411 (95%)

Query:     1 MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
             MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLI PF+ELDIKYFDLGLP+RDATDDKVT+
Sbjct:     1 MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTI 60

Query:    61 ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
             ESAEAT KYNVAIKCATITPDE RV EF LKQMW+SPNGTIRNILNGTVFREPIICKNVP
Sbjct:    61 ESAEATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVFREPIICKNVP 120

Query:   121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
             +L+PGWTKPICIGRHAFGDQYRATD VI+GPGKL + F  EGKD KTE EV+ FTGEGGV
Sbjct:   121 KLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLTMTF--EGKDGKTETEVFTFTGEGGV 178

Query:   181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
             A++MYNTDESIRAFA+ASMNTAY+KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSK
Sbjct:   179 AMAMYNTDESIRAFADASMNTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSK 238

Query:   241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
             ++AAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct:   239 YDAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 298

Query:   301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 360
             DGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEK
Sbjct:   299 DGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEK 358

Query:   361 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 411
             LEAAC+GTVESGKMTKDLALIIHGSK++R+ YLNTEEFIDAVA +L+ RL+
Sbjct:   359 LEAACVGTVESGKMTKDLALIIHGSKLSRDTYLNTEEFIDAVAAELKERLN 409
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS;IMP
GO:0006102 "isocitrate metabolic process" evidence=IEA;IMP
GO:0008152 "metabolic process" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0048046 "apoplast" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0005829 "cytosol" evidence=IDA;NAS
GO:0006739 "NADP metabolic process" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009853 "photorespiration" evidence=RCA
GO:0051049 "regulation of transport" evidence=RCA
GO:0051788 "response to misfolded protein" evidence=RCA
GO:0080129 "proteasome core complex assembly" evidence=RCA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031006-1 idh1 "isocitrate dehydrogenase 1 (NADP+), soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SK00 IDH2 "Isocitrate dehydrogenase [NADP]" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P33198 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031118-95 idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q4R502IDHP_MACFA1, ., 1, ., 1, ., 4, 20.69770.97580.8938N/Ano
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.69530.97580.8938yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.64610.97340.9853yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.64610.97340.9853yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.69770.97580.8938yesno
Q06197IDHC_SOYBN1, ., 1, ., 1, ., 4, 20.90510.99270.9951yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.65330.96130.9299yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.69530.97580.8938yesno
P41939IDHC_YEAST1, ., 1, ., 1, ., 4, 20.63740.98550.9902yesno
O13294IDH2_CANTR1, ., 1, ., 1, ., 4, 20.65520.97820.9854N/Ano
Q6XUZ5IDHC_SHEEP1, ., 1, ., 1, ., 4, 20.68070.96610.9661N/Ano
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.69770.97580.9596yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.90040.99510.9515N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.91970.99030.9855N/Ano
P50215IDH_SPHYA1, ., 1, ., 1, ., 4, 20.62650.96850.9876N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.92190.99030.9879N/Ano
Q9Z2K9IDHC_MICME1, ., 1, ., 1, ., 4, 20.68320.96610.9661N/Ano
Q9Z2K8IDHC_MICOH1, ., 1, ., 1, ., 4, 20.68070.96610.9661N/Ano
O13285IDH1_CANTR1, ., 1, ., 1, ., 4, 20.66830.96610.9302N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.69280.97580.8938yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.65600.97580.9202yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
4th Layer1.1.1.420.993

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
PLN00103410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PLN03065483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PTZ00435413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-163
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 1e-102
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 3e-49
PLN00118372 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+ 2e-06
COG0473348 COG0473, LeuB, Isocitrate/isopropylmalate dehydrog 3e-05
TIGR02088322 TIGR02088, LEU3_arch, isopropylmalate/isohomocitra 1e-04
TIGR00175333 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, 4e-04
TIGR02924 473 TIGR02924, ICDH_alpha, isocitrate dehydrogenase 5e-04
PRK14025330 PRK14025, PRK14025, multifunctional 3-isopropylmal 0.003
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  922 bits (2385), Expect = 0.0
 Identities = 389/410 (94%), Positives = 402/410 (98%)

Query: 1   MAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTV 60
           MAF+KIKVANPIVEMDGDEMTRV WKSIKDKLIFPFL+LDIKYFDLGLPNRDATDDKVTV
Sbjct: 1   MAFEKIKVANPIVEMDGDEMTRVIWKSIKDKLIFPFLDLDIKYFDLGLPNRDATDDKVTV 60

Query: 61  ESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVP 120
           ESAEATLKYNVAIKCATITPDEARVKEF LKQMWKSPNGTIRNILNGTVFREPIICKN+P
Sbjct: 61  ESAEATLKYNVAIKCATITPDEARVKEFGLKQMWKSPNGTIRNILNGTVFREPIICKNIP 120

Query: 121 RLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGV 180
           RL+PGWTKPICIGRHAFGDQYRATD VI+GPGKLKLVFVPEGKDEKTELEVYNFTG GGV
Sbjct: 121 RLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLKLVFVPEGKDEKTELEVYNFTGAGGV 180

Query: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK 240
           ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSK
Sbjct: 181 ALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSK 240

Query: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300
           FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP
Sbjct: 241 FEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCP 300

Query: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEK 360
           DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLD NARLLDFTEK
Sbjct: 301 DGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARLLDFTEK 360

Query: 361 LEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 410
           LEAAC+GTVESGKMTKDLAL+IHG K++R+ YLNTEEFIDAVA++L+ARL
Sbjct: 361 LEAACVGTVESGKMTKDLALLIHGPKVSRDQYLNTEEFIDAVAEELKARL 410

Length = 410
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|215062 PLN00118, PLN00118, isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>gnl|CDD|223549 COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233717 TIGR02088, LEU3_arch, isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>gnl|CDD|232856 TIGR00175, mito_nad_idh, isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>gnl|CDD|234062 TIGR02924, ICDH_alpha, isocitrate dehydrogenase Back     alignment and domain information
>gnl|CDD|184462 PRK14025, PRK14025, multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 414
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
PLN03065483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08299402 isocitrate dehydrogenase; Validated 100.0
PTZ00435413 isocitrate dehydrogenase; Provisional 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
KOG1526422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PF03971735 IDH: Monomeric isocitrate dehydrogenase; InterPro: 96.93
TIGR00178741 monomer_idh isocitrate dehydrogenase, NADP-depende 96.58
COG2838744 Icd Monomeric isocitrate dehydrogenase [Energy pro 94.9
PF04166298 PdxA: Pyridoxal phosphate biosynthetic protein Pdx 93.75
PRK03371326 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 93.0
PRK00232332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.96
PRK03743332 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.76
PRK03946307 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.6
PRK01909329 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.55
PRK05312336 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.44
PRK02746345 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; 92.36
COG1995332 PdxA Pyridoxal phosphate biosynthesis protein [Coe 92.27
TIGR00557320 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. 92.23
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 88.37
PLN00103410 isocitrate dehydrogenase (NADP+); Provisional 84.6
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.9e-111  Score=827.54  Aligned_cols=337  Identities=22%  Similarity=0.233  Sum_probs=307.9

Q ss_pred             ecccEEEECCCCchHHHHHHHHHHHhcCC---CceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCCchh
Q 015008            8 VANPIVEMDGDEMTRVFWKSIKDKLIFPF---LELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEAR   84 (414)
Q Consensus         8 m~~~I~vi~GDGIGpEv~~~~~~v~~~~~---~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~~~~   84 (414)
                      |+++|++|||||||||||+++++||.+..   ++|+|+++++|++++++||.+||++++++++++|++||||+++|.+.+
T Consensus         2 ~~~~IavipGDGIGpEv~~~a~kVl~a~~~~~~~~e~~~~~~G~~~~~~~G~~lpeetl~~~~~~DaiL~Gavg~P~~~~   81 (348)
T COG0473           2 KTYTIAVIPGDGIGPEVMAAALKVLEAAAEFGLDFEFEEAEVGGEAYDKHGEPLPEETLESLKKADAILFGAVGGPKWDP   81 (348)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHhhhcCCceEEEEehhhHHHHHHcCCCCCHHHHHHHHhCCEEEEcccCCCCCCC
Confidence            56999999999999999999999986553   899999999999999999999999999999999999999999996542


Q ss_pred             HHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCC--CCCEEEEeeccCCccccccccccCCCcceeeeecCC
Q 015008           85 VKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGW--TKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEG  162 (414)
Q Consensus        85 ~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~--~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~~  162 (414)
                      .     ..+.+|++++|||+||||+|+||++  .+|+++++.  ++|||||||||||+|+|.+++..             
T Consensus        82 ~-----~~~~~~~ll~lRk~l~lyANlRP~k--~~~~~k~~~~~~~D~viVREnTeG~Y~G~~~~~~-------------  141 (348)
T COG0473          82 L-----PRPERGLLLALRKELDLYANLRPAK--SLPGLKSPLVKGVDIVIVRENTEGLYFGEEGRIL-------------  141 (348)
T ss_pred             C-----CCcccchHHHHHHhcCceeeeeecc--cCCCCCCccCCCccEEEEeeCCCccccCCCcccc-------------
Confidence            1     1267889999999999999999986  566776654  69999999999999999876310             


Q ss_pred             CCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCc
Q 015008          163 KDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQK-KWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK  240 (414)
Q Consensus       163 g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r-~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~  240 (414)
                                  .+ .+++++ ++|||+++|||+|+|||+|++| +++||+|||+|||+.+++|||++|+||+ ++||  
T Consensus       142 ------------~~-~eva~~~~~~Tr~~~eRI~r~AFe~A~~R~~kkvTsv~KaNVl~~s~~lwrev~~eva-~~yP--  205 (348)
T COG0473         142 ------------GG-GEVAIDTKVITRKGSERIARFAFELARKRGRKKVTSVHKANVLKLSDGLWREVVEEVA-KEYP--  205 (348)
T ss_pred             ------------CC-CeEEEEEEeccHHHHHHHHHHHHHHHHhhCCCceEEEehhhhhhhhhHHHHHHHHHHh-hcCC--
Confidence                        01 247888 9999999999999999999999 6899999999999999999999999998 8999  


Q ss_pred             cccCCeEEeeeeHHHHHHHHhhCCCcc-EEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccc
Q 015008          241 FEAAGIWYEHRLIDDMVAYALKSEGGY-VWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR  319 (414)
Q Consensus       241 ~~~~~I~~~~~~VDa~~~~lv~~P~~f-Viv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~  319 (414)
                          +|+++|+|||+++||||++|++| ||||+|||||||||+||+|+|||||+||+|+|++..++||||+|||||    
T Consensus       206 ----dv~~~~~~VD~aam~lV~~P~~FDViVt~NlFGDILSD~aa~l~GslGl~PSAnig~~~~~~lfEPvHGSAP----  277 (348)
T COG0473         206 ----DVELDHMYVDAAAMQLVRNPEQFDVIVTSNLFGDILSDEAAALTGSLGLAPSANLGDERGPALFEPVHGSAP----  277 (348)
T ss_pred             ----CcchhHHhHHHHHHHHhhCccccCEEEEccchhHHHHhHHHHhcCccccCccCccCCCCCCceeecCCCCcc----
Confidence                99999999999999999999999 999999999999999999999999999999998422699999999999    


Q ss_pred             ccccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhc-CCCccchhhhccCCcCCcccccCHHHH
Q 015008          320 VHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVES-GKMTKDLALIIHGSKMTREHYLNTEEF  398 (414)
Q Consensus       320 ~dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~-G~~T~Dlg~~~~G~~~~~~~~~sT~e~  398 (414)
                       ||||||| |||+|+|||++|||+|+|.       .++|++|++||++++++ |++|+|||    |       .++|.||
T Consensus       278 -DIAGkgi-ANPiA~IlS~aMML~~~g~-------~~~A~~Ie~Av~~vl~~~g~~T~Dlg----g-------~~~T~e~  337 (348)
T COG0473         278 -DIAGKGI-ANPIATILSAAMMLRHLGE-------KEAADAIENAVEKVLAEGGIRTPDLG----G-------NATTSEV  337 (348)
T ss_pred             -cccCCCc-cChHHHHHHHHHHHHHhCC-------chHHHHHHHHHHHHHHcCCCCCcccC----C-------CccHHHH
Confidence             9999999 9999999999999999986       56999999999999995 69999998    6       6889999


Q ss_pred             HHHHHHHHHH
Q 015008          399 IDAVADDLRA  408 (414)
Q Consensus       399 ~daV~~~l~~  408 (414)
                      +|+|+++|..
T Consensus       338 ~d~I~~~l~~  347 (348)
T COG0473         338 GDAIAKALAS  347 (348)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1 Back     alignment and domain information
>TIGR00178 monomer_idh isocitrate dehydrogenase, NADP-dependent, monomeric type Back     alignment and domain information
>COG2838 Icd Monomeric isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional Back     alignment and domain information
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated Back     alignment and domain information
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional Back     alignment and domain information
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] Back     alignment and domain information
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1lwd_A413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-172
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-167
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-167
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-167
3inm_A425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-166
3map_A422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-166
3us8_A427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-160
4hcx_A409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-157
2qfv_A427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-156
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 1e-124
1zor_A399 Isocitrate Dehydrogenase From The Hyperthermophile 1e-118
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 1e-106
3vml_A375 Chimera 3-Isopropylmalate Dehydrogenase Between She 3e-04
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  602 bits (1552), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 284/407 (69%), Positives = 328/407 (80%), Gaps = 3/407 (0%)
Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60
Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120
Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179
Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239
Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299
Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 361
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + L
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTL 359
Query: 362 EAACIGTVESGKMTKDLALIIHGSKMTR--EHYLNTEEFIDAVADDL 406
           E  C+ TVESG MTKDLA  IHG    +  EH+LNT +F+D +  +L
Sbjct: 360 EKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNL 406
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2 (M) From N-Terminal: 20% O Middle 70% M Residual 10% O Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query414
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 0.0
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 0.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 0.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 0.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 0.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 0.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 2e-19
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 4e-19
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 2e-04
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 2e-10
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 6e-10
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 1e-09
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 1e-09
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 2e-09
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 4e-09
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 4e-09
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 9e-09
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 3e-08
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 3e-08
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 5e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 1e-05
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
 Score =  578 bits (1491), Expect = 0.0
 Identities = 285/414 (68%), Positives = 329/414 (79%), Gaps = 3/414 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF   GGV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPA-GGVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 361
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + L
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTL 359

Query: 362 EAACIGTVESGKMTKDLALIIHGSKMT--REHYLNTEEFIDAVADDLRARLSGK 413
           E  C+ TVESG MTKDLA  IHG       EH+LNT +F+D +  +L   L  +
Sbjct: 360 EKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRALGRQ 413
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Length = 741 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Length = 336 Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Length = 412 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Length = 435 Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Length = 423 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Length = 496 Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ... Length = 427 Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Length = 409 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Length = 429 Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Length = 333 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB: 3ty3_A Length = 366 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
3us8_A427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
2uxq_A402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
4aoy_A402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
1zor_A399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
2qfy_A427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
1itw_A741 Isocitrate dehydrogenase; greece KEY motif, oxidor 96.99
2b0t_A738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 96.96
1yxo_A328 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA 93.24
2hi1_A330 4-hydroxythreonine-4-phosphate dehydrogenase 2; py 93.16
3lxy_A334 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA 93.09
4aty_A349 Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; o 93.08
3tsn_A367 4-hydroxythreonine-4-phosphate dehydrogenase; stru 91.67
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=7.8e-117  Score=904.64  Aligned_cols=404  Identities=69%  Similarity=1.135  Sum_probs=363.9

Q ss_pred             CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCC
Q 015008            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (414)
Q Consensus         2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~   81 (414)
                      .|+||||+++|++|||||||||||++++++|.+++++|+|+++++|++++++||+++|++++++|++++++||||++||.
T Consensus        23 ~~~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~  102 (427)
T 3us8_A           23 MMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPD  102 (427)
T ss_dssp             --CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             ccccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCC
Confidence            58999999999999999999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecC
Q 015008           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE  161 (414)
Q Consensus        82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~  161 (414)
                      +..++|+.+.++|+|+|++|||.||||+|+||+.++++|++.+++++|||||||||||+|+|+|+...+++..++.|.++
T Consensus       103 ~~~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~  182 (427)
T 3us8_A          103 EGRVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGE  182 (427)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             ccccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecc
Confidence            87667777777899999999999999999999966889877777789999999999999999999887788888888777


Q ss_pred             CCCccchhhhccccCCcceEEEeeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCCcc
Q 015008          162 GKDEKTELEVYNFTGEGGVALSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF  241 (414)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~va~~~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~~~  241 (414)
                      +|+ .++..+++|.+ .+++..+++||+++|||+|+||+||++|+++||+|||+||||.|||+||++|+|||+++||++|
T Consensus       183 ~G~-~~~~~~~~~~~-~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~  260 (427)
T 3us8_A          183 DGQ-TIEHDVYDAPG-AGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQF  260 (427)
T ss_dssp             TSC-EEEEEEEEESS-CEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHH
T ss_pred             ccc-cccccccccCC-CcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCcccc
Confidence            663 22223334443 5677558899999999999999999999999999999999999999999999999855898888


Q ss_pred             ccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccccc
Q 015008          242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVH  321 (414)
Q Consensus       242 ~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~~d  321 (414)
                      ++.+|++++++||+||||||++|++|||||+|||||||||++|+++|||||+||+|+|+++.++||||+|||||||+++|
T Consensus       261 ~~~~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~pSanig~~~~~a~fEp~HGSAPd~~~~~  340 (427)
T 3us8_A          261 KAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLMTSVLMTPDGKTVEAEAAHGTVTRHYRQH  340 (427)
T ss_dssp             HHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSEEEEEECTTSCCEEEECCSCCCHHHHHHH
T ss_pred             CCCCeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhCceeEECCCCCeEEEeCCCCCcCCccchh
Confidence            77799999999999999999999999999999999999999999999999999999998752499999999999988889


Q ss_pred             ccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcCCcccccCHHHHHHH
Q 015008          322 QKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDA  401 (414)
Q Consensus       322 IaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~~~~~~~sT~e~~da  401 (414)
                      |||||++|||+|+|||++|||+|||+++.++.+.++|++|++||.+|+++|++|+|||+.+ ++   ..+.+||+||+|+
T Consensus       341 iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l~~~A~~Ie~Av~~~l~~g~~T~Dlgg~~-~~---~~~~~~T~e~~da  416 (427)
T 3us8_A          341 QKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAKFSETLERVCVDTVESGFMTKDLALLI-GP---DQPWLSTTGFLDK  416 (427)
T ss_dssp             HTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCBHHHHHHH-CT---TCCCBCHHHHHHH
T ss_pred             cCCCCceeCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCCcCccccccc-cc---CCcccCHHHHHHH
Confidence            9999988999999999999999999988777789999999999999999999999998422 11   1236999999999


Q ss_pred             HHHHHHHHhh
Q 015008          402 VADDLRARLS  411 (414)
Q Consensus       402 V~~~l~~~~~  411 (414)
                      |+++|++.|.
T Consensus       417 V~~~l~~~l~  426 (427)
T 3us8_A          417 IDENLRKAMA  426 (427)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHhc
Confidence            9999998874
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>1itw_A Isocitrate dehydrogenase; greece KEY motif, oxidoreductase; HET: ICT; 1.95A {Azotobacter vinelandii} SCOP: c.77.1.2 PDB: 1j1w_A* Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Back     alignment and structure
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa} Back     alignment and structure
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium} Back     alignment and structure
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A Back     alignment and structure
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400} Back     alignment and structure
>3tsn_A 4-hydroxythreonine-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: UNL; 2.63A {Campylobacter jejuni subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 414
d1lwda_413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-138
d1t0la_414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-137
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 3e-44
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 5e-39
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 2e-34
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-30
d1a05a_357 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 7e-30
d1v53a1356 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase 5e-29
d1itwa_740 c.77.1.2 (A:) Monomeric isocitrate dehydrogenase { 3e-26
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 5e-25
d1g2ua_345 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 4e-15
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  400 bits (1028), Expect = e-138
 Identities = 284/411 (69%), Positives = 327/411 (79%), Gaps = 3/411 (0%)

Query: 2   AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVE 61
           A Q+IKVA P+VEMDGDEMTR+ W+ IK+KLI P +++ +KYFDLGLPNRD T+D+VT++
Sbjct: 1   ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 60

Query: 62  SAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPR 121
           SA AT KY+VA+KCATITPDEARV+EF LK+MWKSPNGTIRNIL GTVFREPIICKN+PR
Sbjct: 61  SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 120

Query: 122 LIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVA 181
           L+PGWTKPI IGRHA GDQY+ATD V+   G  K+VF P+      + EVYNF    GV 
Sbjct: 121 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAG-GVG 179

Query: 182 LSMYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKF 241
           + MYNTDESI  FA +    A QKKWPLY+STKNTILK YDGRFKDIFQE++E ++K+ F
Sbjct: 180 MGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDF 239

Query: 242 EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPD 301
           +   IWYEHRLIDDMVA  LKS GG+VWACKNYDGDVQSD LAQGFGSLGLMTSVLVCPD
Sbjct: 240 DKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPD 299

Query: 302 GKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKL 361
           GKTIEAEAAHGTVTRHYR HQKG  TSTN IASIFAW+RGL HR KLD N  L+ F + L
Sbjct: 300 GKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTL 359

Query: 362 EAACIGTVESGKMTKDLALIIHGSKMT--REHYLNTEEFIDAVADDLRARL 410
           E  C+ TVESG MTKDLA  IHG       EH+LNT +F+D +  +L   L
Sbjct: 360 EKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTIKSNLDRAL 410
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Length = 357 Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Length = 356 Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 740 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Length = 345 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query414
d1lwda_413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1t0la_414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1itwa_740 Monomeric isocitrate dehydrogenase {Azotobacter vi 98.77
d1ptma_329 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 95.74
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.8e-103  Score=799.30  Aligned_cols=408  Identities=67%  Similarity=1.113  Sum_probs=351.5

Q ss_pred             CccceeecccEEEECCCCchHHHHHHHHHHHhcCCCceEEEEEecCchhhhhcCCCCCHHHHHHHHcCCeeeecccCCCC
Q 015008            2 AFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPD   81 (414)
Q Consensus         2 ~~~~~~m~~~I~vi~GDGIGpEv~~~~~~v~~~~~~~i~~~~~~~G~~~~~~~g~~lp~~~~dai~~~~v~lkg~~~tp~   81 (414)
                      |.+||+|++||++|||||||+++|+.++++++.++++|+|+++|+|.++|++||+++|+|+++++++++++||||++||+
T Consensus         1 ~~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~   80 (413)
T d1lwda_           1 ADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPD   80 (413)
T ss_dssp             CCCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCC
T ss_pred             CCCcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCC
Confidence            57999999999999999999999999999898889999999999999999999999999999999999999999999998


Q ss_pred             chhHHHHHhhhcCCCcchhHhhhcCceEEeeeeeccCCCCCCCCCCCCEEEEeeccCCccccccccccCCCcceeeeecC
Q 015008           82 EARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGWTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPE  161 (414)
Q Consensus        82 ~~~~~e~~l~~~~~s~~~~LRk~ldlyan~RPi~~~~~~~l~~~~~iDivivREnteg~Y~g~e~~~~~~g~~~~~~~~~  161 (414)
                      +..+++..+.+.++|+|+.||+.||||+|+||+++...+|+..++++|+||+||||||+|+|.|+....+....+.+...
T Consensus        81 ~~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~  160 (413)
T d1lwda_          81 EARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPK  160 (413)
T ss_dssp             HHHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEET
T ss_pred             ccccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEecc
Confidence            76555544566789999999999999999999987545566777789999999999999999999876666555555544


Q ss_pred             CCCccchhhhccccCCcceEEE-eeeCHHHHHHHHHHHHHHHHhCCCCEEEEeCCCcccccchHHHHHHHHHHHhhcCC-
Q 015008          162 GKDEKTELEVYNFTGEGGVALS-MYNTDESIRAFAEASMNTAYQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKS-  239 (414)
Q Consensus       162 ~g~~~~~~~~~~~~~~~~va~~-~~~Tr~~~eRiar~AFe~A~~r~~~Vt~v~KaNvl~~tdglf~~~~~eva~~~yp~-  239 (414)
                      .|.........++.  ...+.. .++|+.+++||+++||++|++|+++||++||+|||+.|+|+|+++|+||+ ++||+ 
T Consensus       161 ~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva-~~~p~~  237 (413)
T d1lwda_         161 DGSSAKQWEVYNFP--AGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIF-EKHYKT  237 (413)
T ss_dssp             TCCCCEEEEEEEES--SCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHH-HHHTHH
T ss_pred             cccccccccccccc--ccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHH-HHhccc
Confidence            43221111111112  234444 88999999999999999999999999999999999999999999999997 56774 


Q ss_pred             ccccCCeEEeeeeHHHHHHHHhhCCCccEEEeCCcchhhHhhhhhhhcCCccccccceecCCCceEEEccccCccccccc
Q 015008          240 KFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR  319 (414)
Q Consensus       240 ~~~~~~I~~~~~~VDa~~~~lv~~P~~fViv~~NlfGDILSDlaa~l~GglGlapSanig~~~~~a~FEp~HGSAP~~~~  319 (414)
                      ++...+|.++++++|+++|+|+++|+.|||||+|||||||||++|+++|||||+||+|+|++....+|||+|||||+|+.
T Consensus       238 ~~~~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~pSanig~~~~~~~fe~~HGsap~~ag  317 (413)
T d1lwda_         238 DFDKYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYR  317 (413)
T ss_dssp             HHHHTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSEEEEEECTTSSCEEEECCSCCCHHHHH
T ss_pred             cccccEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCCcccccCCCccccccccccccchhhcc
Confidence            34445699999999999999999998779999999999999999999999999999999987535789999999998887


Q ss_pred             c-cccCCCCccChhHHHHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHHhcCCCccchhhhccCCcC--CcccccCHH
Q 015008          320 V-HQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKM--TREHYLNTE  396 (414)
Q Consensus       320 ~-dIaGk~i~ANP~a~IlS~ammL~~lG~~~~~~~~~~~A~~I~~Av~~~l~~G~~T~Dlg~~~~G~~~--~~~~~~sT~  396 (414)
                      . ||+|||+ |||+|||||++|||+|||+.+.+..+.++|++|++||.+|+++|++|+|||+...|...  ...+.+||+
T Consensus       318 ~~~iagk~i-ANP~a~IlS~ammL~~lg~~~~~~~l~~~A~~Ie~Av~~~l~~G~~T~DlgG~~~~~~~~~~~~~~~sT~  396 (413)
T d1lwda_         318 EHQKGRPTS-TNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTS  396 (413)
T ss_dssp             HHHTTCCCC-CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHCTTSCCBTTTBCCHH
T ss_pred             hhhcCCccc-cChHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHCCCCCcccCCCccccccccccCCccCHH
Confidence            6 8899999 99999999999999999998777778899999999999999999999999832212110  112357999


Q ss_pred             HHHHHHHHHHHHHhhcC
Q 015008          397 EFIDAVADDLRARLSGK  413 (414)
Q Consensus       397 e~~daV~~~l~~~~~~~  413 (414)
                      ||+|+|+++|+++|.++
T Consensus       397 ef~daV~~~L~~~l~~~  413 (413)
T d1lwda_         397 DFLDTIKSNLDRALGRQ  413 (413)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999999875
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ptma_ c.77.1.3 (A:) 4-hydroxythreonine-4-phosphate dehydrogenase PdxA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure