Query 015009
Match_columns 414
No_of_seqs 164 out of 1189
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 1.5E-41 5.2E-46 299.8 8.1 122 5-126 4-129 (134)
2 2crr_A Stromal membrane-associ 100.0 2.8E-41 9.5E-46 300.4 7.6 122 7-128 8-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 1E-39 3.4E-44 290.1 11.1 119 7-126 4-129 (140)
4 3jue_A Arfgap with coiled-coil 100.0 1.3E-35 4.3E-40 295.4 9.1 118 10-127 27-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 2.9E-35 1E-39 296.0 11.4 120 7-127 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 5.6E-35 1.9E-39 259.1 8.4 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.2E-34 4.3E-39 259.8 6.0 93 12-104 13-106 (149)
8 3dwd_A ADP-ribosylation factor 100.0 6.4E-34 2.2E-38 254.3 10.2 114 11-124 21-145 (147)
9 2p57_A GTPase-activating prote 100.0 3.1E-32 1.1E-36 243.0 8.9 90 13-102 22-112 (144)
10 3sub_A ADP-ribosylation factor 100.0 2.3E-32 7.8E-37 247.7 8.2 110 11-120 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 8.1E-31 2.8E-35 251.3 11.0 118 8-125 22-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 2.9E-31 9.9E-36 269.2 8.1 118 9-126 4-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1.5E-30 5.1E-35 246.4 9.7 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 100.0 1.4E-28 4.6E-33 240.3 11.2 91 11-101 20-110 (329)
15 1u5k_A Hypothetical protein; O 85.3 0.77 2.6E-05 42.5 4.6 76 26-118 148-223 (244)
16 1gnf_A Transcription factor GA 79.6 1 3.5E-05 32.8 2.4 39 26-64 2-41 (46)
17 3dfx_A Trans-acting T-cell-spe 72.7 1.8 6.3E-05 33.4 2.2 39 25-63 4-43 (63)
18 2vut_I AREA, nitrogen regulato 72.0 2.1 7.2E-05 30.7 2.3 35 29-63 2-37 (43)
19 4gat_A Nitrogen regulatory pro 69.4 2.6 8.8E-05 32.8 2.4 38 26-63 7-45 (66)
20 4hc9_A Trans-acting T-cell-spe 66.4 2.6 8.9E-05 35.9 2.1 36 28-63 5-41 (115)
21 1tjl_A DNAK suppressor protein 58.4 4 0.00014 36.2 1.9 35 25-59 108-143 (151)
22 2kae_A GATA-type transcription 56.4 3.1 0.00011 32.9 0.7 36 27-63 7-45 (71)
23 2kgo_A Uncharacterized protein 46.8 3.4 0.00012 35.1 -0.5 33 27-59 55-88 (108)
24 1d4u_A Nucleotide excision rep 43.9 4.3 0.00015 34.5 -0.3 31 27-57 4-35 (111)
25 3iz6_N 40S ribosomal protein S 39.4 19 0.00066 27.1 2.7 39 26-69 16-54 (56)
26 3g9m_A Glucocorticoid receptor 37.8 11 0.00038 30.4 1.2 30 27-59 1-30 (90)
27 4hc9_A Trans-acting T-cell-spe 36.5 20 0.00069 30.3 2.7 38 26-63 57-95 (115)
28 1ffk_W Ribosomal protein L37AE 36.2 18 0.0006 28.7 2.1 41 14-56 12-53 (73)
29 3dzy_D Peroxisome proliferator 34.6 17 0.00059 36.5 2.3 32 26-60 48-79 (419)
30 2han_B Ecdysone receptor; tran 31.2 22 0.00076 30.2 2.1 31 27-60 7-37 (119)
31 1r4i_A Androgen receptor; AR, 30.9 17 0.0006 30.3 1.4 33 25-60 4-36 (105)
32 2nll_B Protein (thyroid hormon 30.0 21 0.00073 29.6 1.8 29 29-60 2-30 (103)
33 2ebl_A COUP transcription fact 29.6 20 0.00068 29.0 1.5 32 26-60 5-36 (89)
34 1hcq_A Protein (estrogen recep 29.0 23 0.0008 28.3 1.8 31 27-60 3-33 (84)
35 1dsz_A RAR-alpha, retinoic aci 26.9 27 0.00093 28.0 1.8 29 29-60 5-33 (86)
36 2han_A Protein ultraspiracle; 26.5 26 0.0009 28.5 1.7 31 27-60 9-39 (93)
37 1dl6_A Transcription factor II 26.0 19 0.00066 26.8 0.7 29 29-58 12-40 (58)
38 3c5k_A HD6, histone deacetylas 25.6 21 0.00072 29.9 1.0 32 28-59 24-59 (109)
39 1cit_A NGFI-B, protein (orphan 25.0 33 0.0011 27.7 2.0 28 30-60 2-29 (89)
40 1kb2_A Vitamin D3 receptor; VD 24.6 29 0.00098 29.2 1.6 30 28-60 6-35 (110)
41 1ynw_B Retinoic acid receptor 23.9 23 0.00078 29.2 0.9 30 28-60 3-32 (99)
42 2a66_A Orphan nuclear receptor 23.6 20 0.00069 30.3 0.5 33 25-60 6-38 (113)
43 3j21_d 50S ribosomal protein L 23.4 39 0.0013 27.7 2.1 30 26-56 31-77 (89)
44 2uzg_A Ubiquitin carboxyl-term 22.7 25 0.00087 28.6 0.9 33 27-59 24-63 (97)
45 1a6y_A Orphan nuclear receptor 22.4 30 0.001 28.2 1.3 31 27-60 6-36 (94)
46 3dzy_A Retinoic acid receptor 22.4 20 0.0007 36.6 0.3 30 27-59 136-165 (467)
47 1lo1_A Steroid hormone recepto 21.3 22 0.00075 29.3 0.2 30 28-60 4-33 (98)
48 4glq_A Methyl-accepting chemot 21.3 22 0.00075 30.7 0.2 26 75-100 132-157 (171)
49 1dsz_B RXR-alpha, retinoic aci 20.0 28 0.00097 27.9 0.6 31 27-60 4-34 (85)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=299.77 Aligned_cols=122 Identities=49% Similarity=0.917 Sum_probs=107.4
Q ss_pred ccccHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHH
Q 015009 5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI 84 (414)
Q Consensus 5 a~~sk~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L 84 (414)
+..+++..++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||+.|+||||+||+|||+||||+||+|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCchHHHHHHhhcCCCCCC----hhHHHHHHHHHhhhcccccCC
Q 015009 85 QSMGNEKANSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRD 126 (414)
Q Consensus 85 ~~~GN~~aN~iwea~lPp~~d----~~~~e~FIraKY~eKrf~~~~ 126 (414)
+.+||.++|.|||+++|+.+. ...+|+|||+||++++|+.+.
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTT
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCc
Confidence 999999999999999986542 346899999999999999764
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.8e-41 Score=300.37 Aligned_cols=122 Identities=51% Similarity=0.974 Sum_probs=113.2
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHh
Q 015009 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (414)
Q Consensus 7 ~sk~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~ 86 (414)
..++++++++++|+.|++.|+|+.|+|||+++|+|||+|||||||+.|+||||+||+|||+||||+||+|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHhhcCCCCCC----hhHHHHHHHHHhhhcccccCCCC
Q 015009 87 MGNEKANSYWEAELPPNYD----RVGIENFIRAKYEEKRWVSRDGQ 128 (414)
Q Consensus 87 ~GN~~aN~iwea~lPp~~d----~~~~e~FIraKY~eKrf~~~~~~ 128 (414)
+||.++|.|||+++|+.+. ...+|+|||+||++++|+.+...
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 9999999999999986542 34689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=1e-39 Score=290.07 Aligned_cols=119 Identities=31% Similarity=0.698 Sum_probs=109.5
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHh
Q 015009 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (414)
Q Consensus 7 ~sk~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~ 86 (414)
..++++++++++|+.|++.|+|+.|+|||+++|+|+|+|||||||+.|+||||+||+| |+||||+||+|++++|++|+.
T Consensus 4 ~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~ 82 (140)
T 2olm_A 4 AKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK 82 (140)
T ss_dssp HHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH
Confidence 3567788999999999999999999999999999999999999999999999999996 999999999999999999999
Q ss_pred hCchHHHHHHhhcCCC-------CCChhHHHHHHHHHhhhcccccCC
Q 015009 87 MGNEKANSYWEAELPP-------NYDRVGIENFIRAKYEEKRWVSRD 126 (414)
Q Consensus 87 ~GN~~aN~iwea~lPp-------~~d~~~~e~FIraKY~eKrf~~~~ 126 (414)
+||.++|.|||+++++ ..+...+++|||+||++++|+.+.
T Consensus 83 ~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~ 129 (140)
T 2olm_A 83 HGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPP 129 (140)
T ss_dssp CHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCH
T ss_pred hccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCc
Confidence 9999999999998753 224457899999999999999754
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.3e-35 Score=295.40 Aligned_cols=118 Identities=42% Similarity=0.759 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCc
Q 015009 10 ELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 89 (414)
Q Consensus 10 ~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN 89 (414)
+.+++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|+.+||
T Consensus 27 ~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn 106 (368)
T 3jue_A 27 REPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGN 106 (368)
T ss_dssp -----CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCH
T ss_pred hhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHcc
Confidence 44556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCCC
Q 015009 90 EKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRDG 127 (414)
Q Consensus 90 ~~aN~iwea~lPp~--------~d~~~~e~FIraKY~eKrf~~~~~ 127 (414)
.++|.|||+++|+. .+...+++||++||++++|+.+..
T Consensus 107 ~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 107 VIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 99999999998642 234578999999999999997653
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=2.9e-35 Score=296.02 Aligned_cols=120 Identities=42% Similarity=0.777 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHh
Q 015009 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (414)
Q Consensus 7 ~sk~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~ 86 (414)
-+++++++++++|+.|++.|+|+.|||||+++|+|||+|||||||+.|+||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hCchHHHHHHhhcCCCCC------C-hhHHHHHHHHHhhhcccccCCC
Q 015009 87 MGNEKANSYWEAELPPNY------D-RVGIENFIRAKYEEKRWVSRDG 127 (414)
Q Consensus 87 ~GN~~aN~iwea~lPp~~------d-~~~~e~FIraKY~eKrf~~~~~ 127 (414)
+||.++|.|||+++|+.. | ...+++|||+||++++|+..+.
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 1 2458899999999999998664
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=5.6e-35 Score=259.13 Aligned_cols=108 Identities=32% Similarity=0.622 Sum_probs=98.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCchHHH
Q 015009 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKAN 93 (414)
Q Consensus 14 r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN~~aN 93 (414)
..+++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC--CC-CChhHHHHHHHHHhhhcc
Q 015009 94 SYWEAELP--PN-YDRVGIENFIRAKYEEKR 121 (414)
Q Consensus 94 ~iwea~lP--p~-~d~~~~e~FIraKY~eKr 121 (414)
+|||++.. +. ..+..++.||..+|+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 99998543 22 224678999999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=259.76 Aligned_cols=93 Identities=41% Similarity=0.755 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCC-CCHHHHHHHHhhCch
Q 015009 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNE 90 (414)
Q Consensus 12 ~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~-Wt~eeV~~L~~~GN~ 90 (414)
.++++++|+.|++.|+|++|+|||+++|+|+|+|||||||+.|+||||.||+|||+||||+||. |++++|++|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHhhcCCCCC
Q 015009 91 KANSYWEAELPPNY 104 (414)
Q Consensus 91 ~aN~iwea~lPp~~ 104 (414)
++|+||++++....
T Consensus 93 ~an~~~e~~~~~~~ 106 (149)
T 2crw_A 93 SASSFFHQHGCSTN 106 (149)
T ss_dssp HHHHHHHHHCCCCC
T ss_pred HHHHHHHhcCCCCc
Confidence 99999999987643
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=254.33 Aligned_cols=114 Identities=36% Similarity=0.667 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCch
Q 015009 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNE 90 (414)
Q Consensus 11 ~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN~ 90 (414)
.+++++++|+.|++.|+|+.|+|||+++|+|+|++||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~ 100 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 100 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC--CCCCh---------hHHHHHHHHHhhhccccc
Q 015009 91 KANSYWEAELP--PNYDR---------VGIENFIRAKYEEKRWVS 124 (414)
Q Consensus 91 ~aN~iwea~lP--p~~d~---------~~~e~FIraKY~eKrf~~ 124 (414)
++|+|||++.. +..+. ..+++-|+++++.+.|..
T Consensus 101 ~an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 101 KFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 99999998742 22221 235777888888888864
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=3.1e-32 Score=242.98 Aligned_cols=90 Identities=40% Similarity=0.811 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCC-CCHHHHHHHHhhCchH
Q 015009 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNEK 91 (414)
Q Consensus 13 ~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~-Wt~eeV~~L~~~GN~~ 91 (414)
++.+++|+.|++.|+|+.|+|||+++|+|+|++||||||+.|+||||+||+|||+||||+||. |++++|+.|+.+||.+
T Consensus 22 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~ 101 (144)
T 2p57_A 22 TEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNAN 101 (144)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHH
Confidence 467889999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCCC
Q 015009 92 ANSYWEAELPP 102 (414)
Q Consensus 92 aN~iwea~lPp 102 (414)
+|.||+++.-.
T Consensus 102 an~~~e~~g~~ 112 (144)
T 2p57_A 102 ATAFFRQHGCT 112 (144)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHcCCC
Confidence 99999988543
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=2.3e-32 Score=247.67 Aligned_cols=110 Identities=38% Similarity=0.667 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhcC-CCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCc
Q 015009 11 LNARHRKILEGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 89 (414)
Q Consensus 11 ~~~r~~kiL~~Llk~-PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN 89 (414)
+++..+++|+.|++. |+|+.|+|||+++|+|||++||||||+.|+||||.||+|||+||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 678899999999985 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhcCCCCCChh-HHHHHHHHHhhhc
Q 015009 90 EKANSYWEAELPPNYDRV-GIENFIRAKYEEK 120 (414)
Q Consensus 90 ~~aN~iwea~lPp~~d~~-~~e~FIraKY~eK 120 (414)
.++|.||+++........ .+..-.-.+|+++
T Consensus 84 ~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 84 KKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 999999999876654431 2233344555554
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=8.1e-31 Score=251.25 Aligned_cols=118 Identities=38% Similarity=0.689 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhh
Q 015009 8 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 87 (414)
Q Consensus 8 sk~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~ 87 (414)
+...+++.+++|+.|++.|+|+.|+|||+++|+|+|++||||+|++|+|+||.||+|||+|||++||.|+.++|.+|..+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~ 101 (301)
T 2b0o_E 22 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 101 (301)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccC
Q 015009 88 GNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 125 (414)
Q Consensus 88 GN~~aN~iwea~lPp~--------~d~~~~e~FIraKY~eKrf~~~ 125 (414)
||.++|.+||+.+|.. .+...+++||++||++++|..+
T Consensus 102 GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 102 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred CCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999987642 2446799999999999999764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=2.9e-31 Score=269.23 Aligned_cols=118 Identities=38% Similarity=0.679 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhC
Q 015009 9 KELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMG 88 (414)
Q Consensus 9 k~~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~G 88 (414)
..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++|+||||+||+|||+||||+||.|+.+++.+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~G 83 (497)
T 3lvq_E 4 GEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMG 83 (497)
T ss_dssp ----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCC
T ss_pred chhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCC
Q 015009 89 NEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (414)
Q Consensus 89 N~~aN~iwea~lPp~--------~d~~~~e~FIraKY~eKrf~~~~ 126 (414)
|..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 84 N~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 84 NTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 999999999998642 23457899999999999998754
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=1.5e-30 Score=246.42 Aligned_cols=114 Identities=37% Similarity=0.723 Sum_probs=105.4
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCchHH
Q 015009 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 92 (414)
Q Consensus 13 ~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN~~a 92 (414)
++++++|+.|++.|+|+.|+|||+.+|+|+|++||+|||++|+||||+||+|||+|||++||.|+.+++..|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhHHHHHHHHHhhhcccccCC
Q 015009 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (414)
Q Consensus 93 N~iwea~lPp~--------~d~~~~e~FIraKY~eKrf~~~~ 126 (414)
|+|||+.+|.. .+...+++||++||+.++|..+.
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999987632 34567899999999999998653
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-28 Score=240.30 Aligned_cols=91 Identities=41% Similarity=0.760 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCch
Q 015009 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNE 90 (414)
Q Consensus 11 ~~~r~~kiL~~Llk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN~ 90 (414)
.+++++++|+.|++.|+|+.|+|||+++|+|||++||||||+.|+||||+||+|||+||||+||+|++++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 015009 91 KANSYWEAELP 101 (414)
Q Consensus 91 ~aN~iwea~lP 101 (414)
++|++||+...
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998754
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=85.31 E-value=0.77 Score=42.55 Aligned_cols=76 Identities=20% Similarity=0.466 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceeeecccCCCCHHHHHHHHhhCchHHHHHHhhcCCCCCC
Q 015009 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYD 105 (414)
Q Consensus 26 PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVKSlsLD~Wt~eeV~~L~~~GN~~aN~iwea~lPp~~d 105 (414)
|.=..|+.||..+..|.+...|.++|..|...+ .++.+++..|+.+-......+..-.+++. .
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~~~~~~~~~~~-~ 210 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVRASFEQPVPSA-D 210 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHHHHHHSCCCGG-G
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHHHHhhCCCCHH-H
Confidence 566799999998777899999999999985311 35788888887664443333333333222 2
Q ss_pred hhHHHHHHHHHhh
Q 015009 106 RVGIENFIRAKYE 118 (414)
Q Consensus 106 ~~~~e~FIraKY~ 118 (414)
....+++++.=|.
T Consensus 211 ~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 211 RPALWRALEKFVT 223 (244)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2334455544433
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=79.61 E-value=1 Score=32.75 Aligned_cols=39 Identities=33% Similarity=0.780 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCCc
Q 015009 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGVH 64 (414)
Q Consensus 26 PgNk~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~h 64 (414)
...+.|.+|+.. -|.|=.-..|..||-.|.-.++..|.+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 356899999987 579999999999999999888876643
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=72.73 E-value=1.8 Score=33.42 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCC
Q 015009 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 25 ~PgNk~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~ 63 (414)
......|.+|+.. -|.|=.-..|-.||-.|.-.++..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567899999987 57999999999999999988887664
No 18
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=72.04 E-value=2.1 Score=30.67 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.7
Q ss_pred CCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCC
Q 015009 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 29 k~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~ 63 (414)
+.|.+|+.. -|.|=.-..|-.||-.|.-..|.-|.
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999987 57999999999999999887776553
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=69.41 E-value=2.6 Score=32.82 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCC
Q 015009 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 26 PgNk~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~ 63 (414)
.....|++|+.. -|.|-.-..|-.||-.|.-.++..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999987 58999999999999999888877654
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=66.37 E-value=2.6 Score=35.88 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.9
Q ss_pred CCCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCC
Q 015009 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 28 Nk~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~ 63 (414)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999987 69999999999999999887775543
No 21
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=58.40 E-value=4 Score=36.20 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCCCC-CeeEcccchHhhHhhhHHhh
Q 015009 25 LPENRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (414)
Q Consensus 25 ~PgNk~CADCGa~~P-~WaSvn~GVFlC~~CSgIHR 59 (414)
...-.+|.+||.+=| .-.-.--++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 356679999998733 11222336778999998764
No 22
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=56.45 E-value=3.1 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=29.2
Q ss_pred CCCCCCCCCCC-CCCeeE--cccchHhhHhhhHHhhcCCC
Q 015009 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 27 gNk~CADCGa~-~P~WaS--vn~GVFlC~~CSgIHR~LG~ 63 (414)
....|.+|+.. -|.|=. -.-| .||-.|.-.++..+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999987 589998 6778 899999988887664
No 23
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=46.77 E-value=3.4 Score=35.07 Aligned_cols=33 Identities=24% Similarity=0.558 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCCC-CeeEcccchHhhHhhhHHhh
Q 015009 27 ENRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (414)
Q Consensus 27 gNk~CADCGa~~P-~WaSvn~GVFlC~~CSgIHR 59 (414)
.--+|.+||.+=| .-.-.--++-+|+.|...+-
T Consensus 55 syG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 55 SLDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CCSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred cCceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 3579999998733 22223336778999998764
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=43.90 E-value=4.3 Score=34.54 Aligned_cols=31 Identities=13% Similarity=0.371 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCC-eeEcccchHhhHhhhHH
Q 015009 27 ENRECADCKAKGPR-WASVNLGIFICMQCSGI 57 (414)
Q Consensus 27 gNk~CADCGa~~P~-WaSvn~GVFlC~~CSgI 57 (414)
+...|.+||...-. |..-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 45679999987433 44569999999999864
No 25
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=39.36 E-value=19 Score=27.12 Aligned_cols=39 Identities=26% Similarity=0.465 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhcCCCccceee
Q 015009 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69 (414)
Q Consensus 26 PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~LG~hISkVK 69 (414)
++-+.|.-||.+.- +-=.||..+|-.|- |++...|.+||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 56789999998643 33489999999996 66666666665
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=37.79 E-value=11 Score=30.43 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhh
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR 59 (414)
|+..|.=||.... ...||++.|..|.++.|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997653 45899999999999876
No 27
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=36.53 E-value=20 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCC-CCCeeEcccchHhhHhhhHHhhcCCC
Q 015009 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (414)
Q Consensus 26 PgNk~CADCGa~-~P~WaSvn~GVFlC~~CSgIHR~LG~ 63 (414)
.....|++|+.. -|.|=.-..|-.||-.|.-.++..|.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 95 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCC
Confidence 456899999987 59999999999999999988877664
No 28
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=36.15 E-value=18 Score=28.72 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=31.3
Q ss_pred HHHHHHHHh-hcCCCCCCCCCCCCCCCCeeEcccchHhhHhhhH
Q 015009 14 RHRKILEGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (414)
Q Consensus 14 r~~kiL~~L-lk~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSg 56 (414)
..++.+.++ ........|.-||.....+.. .||+.|..|.-
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 345566666 567888899999987777665 59999999954
No 29
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=34.61 E-value=17 Score=36.49 Aligned_cols=32 Identities=28% Similarity=0.625 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 26 PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
..+..|.=||..... ..||++.|..|.++.|-
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFrR 79 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFRR 79 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHcc
Confidence 346789999987653 48999999999998763
No 30
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=31.17 E-value=22 Score=30.23 Aligned_cols=31 Identities=19% Similarity=0.591 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
....|.=||.... ...||++.|..|.++.|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 4678999997643 579999999999998873
No 31
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=30.86 E-value=17 Score=30.29 Aligned_cols=33 Identities=18% Similarity=0.613 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 25 ~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
.+....|.=||... ....||++.|..|.++.|-
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 35678899999753 3579999999999999873
No 32
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=29.99 E-value=21 Score=29.58 Aligned_cols=29 Identities=24% Similarity=0.588 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 29 k~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
..|.=||.... ...||++.|..|.++.|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56899997643 468999999999998873
No 33
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=29.60 E-value=20 Score=29.04 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 26 PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
+.+..|.=||.... ...||++.|..|.++.|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997654 458999999999998873
No 34
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=29.02 E-value=23 Score=28.29 Aligned_cols=31 Identities=26% Similarity=0.687 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
+...|.=||.... ...||++.|..|.++.|-
T Consensus 3 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYAS---GYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCCC---CeeeCccchHHhhhhhhh
Confidence 4578999997643 569999999999998873
No 35
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=26.87 E-value=27 Score=28.00 Aligned_cols=29 Identities=28% Similarity=0.734 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 29 RECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 29 k~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
..|.=||.... ...||++.|..|.++.|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997653 458999999999998873
No 36
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=26.54 E-value=26 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
....|.=||.... ...||++.|..|.++.|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 4568999997643 569999999999998873
No 37
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=25.97 E-value=19 Score=26.80 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred CCCCCCCCCCCCeeEcccchHhhHhhhHHh
Q 015009 29 RECADCKAKGPRWASVNLGIFICMQCSGIH 58 (414)
Q Consensus 29 k~CADCGa~~P~WaSvn~GVFlC~~CSgIH 58 (414)
..|-+||.... -....-|..+|..|.-+-
T Consensus 12 ~~Cp~C~~~~l-v~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAIL-VEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCC-EECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCce-eEeCCCCeEEeCCCCCEE
Confidence 47999998653 224467999999996543
No 38
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.61 E-value=21 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCCeeEcccchHhhH----hhhHHhh
Q 015009 28 NRECADCKAKGPRWASVNLGIFICM----QCSGIHR 59 (414)
Q Consensus 28 Nk~CADCGa~~P~WaSvn~GVFlC~----~CSgIHR 59 (414)
...|.+|+..+..|+++.-|-+-|. .-+..|-
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCgr~~~~HA~~H~ 59 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHH 59 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEECTTTTCHHHHHH
T ss_pred CCcCccccCCCCeeeeeecCccccCCCcChHHHHHh
Confidence 5679999999999999988888884 4455553
No 39
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=24.97 E-value=33 Score=27.71 Aligned_cols=28 Identities=25% Similarity=0.702 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 30 ECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 30 ~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
.|.=||.... ...||++.|..|.++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888987643 568999999999998873
No 40
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=24.60 E-value=29 Score=29.16 Aligned_cols=30 Identities=23% Similarity=0.667 Sum_probs=24.0
Q ss_pred CCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 28 Nk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
...|.=||.... ...||++.|..|.++.|-
T Consensus 6 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 6 PRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp -CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 467999997653 458999999999998873
No 41
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=23.92 E-value=23 Score=29.24 Aligned_cols=30 Identities=23% Similarity=0.727 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 28 Nk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
...|.=||.... ...||++.|..|.++.|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997643 468999999999998873
No 42
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=23.64 E-value=20 Score=30.31 Aligned_cols=33 Identities=21% Similarity=0.554 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 25 LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 25 ~PgNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
.+....|.=||... ....||++.|..|.++.|-
T Consensus 6 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 6 EDLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ----CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 34567899999753 3679999999999998873
No 43
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.37 E-value=39 Score=27.72 Aligned_cols=30 Identities=23% Similarity=0.557 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCC-------CCC----------eeEcccchHhhHhhhH
Q 015009 26 PENRECADCKAK-------GPR----------WASVNLGIFICMQCSG 56 (414)
Q Consensus 26 PgNk~CADCGa~-------~P~----------WaSvn~GVFlC~~CSg 56 (414)
+.--.|.|||.. -|. -++=.|| .+|..|..
T Consensus 31 ~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 31 PKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred CCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 333469999975 121 3455799 99999964
No 44
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=22.67 E-value=25 Score=28.61 Aligned_cols=33 Identities=36% Similarity=0.754 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCC-eeEcc--cchHhhH----hhhHHhh
Q 015009 27 ENRECADCKAKGPR-WASVN--LGIFICM----QCSGIHR 59 (414)
Q Consensus 27 gNk~CADCGa~~P~-WaSvn--~GVFlC~----~CSgIHR 59 (414)
....|.+|+..+.. |+++. -|-+-|. .-+..|-
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~ 63 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHS 63 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHH
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHh
Confidence 45789999966555 99998 8888884 4455553
No 45
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=22.42 E-value=30 Score=28.21 Aligned_cols=31 Identities=23% Similarity=0.570 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
....|.=||.... ...||++.|..|.++.|-
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFRR 36 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehhe
Confidence 3457999997653 568999999999998873
No 46
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=22.35 E-value=20 Score=36.60 Aligned_cols=30 Identities=23% Similarity=0.712 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhh
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR 59 (414)
.++.|.=||....- ..||+..|..|.++.|
T Consensus 136 ~~~~C~VCg~~a~g---~hygv~sC~~Ck~FFr 165 (467)
T 3dzy_A 136 TKHICAICGDRSSG---KHYGVYSCEGCKGFFK 165 (467)
T ss_dssp -CEECTTTSSEECS---EETTEECCHHHHHHHH
T ss_pred CCCcceeCCCCCCC---CcCCCcchhhhhHhcc
Confidence 45679999987543 4899999999999887
No 47
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=21.33 E-value=22 Score=29.31 Aligned_cols=30 Identities=20% Similarity=0.555 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 28 NRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 28 Nk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
...|.=||.... ...||++.|..|.++.|-
T Consensus 4 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIAS---GYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEECS---EESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCCc---CeeeCccchhhhhhhhee
Confidence 467999997642 568999999999998873
No 48
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=21.27 E-value=22 Score=30.71 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHhhCchHHHHHHhhcC
Q 015009 75 TWLPEQVAFIQSMGNEKANSYWEAEL 100 (414)
Q Consensus 75 ~Wt~eeV~~L~~~GN~~aN~iwea~l 100 (414)
.|+++|+++|+.+++..+-.+-.+.+
T Consensus 132 ~w~~~ei~ll~~lA~ql~iAi~qa~l 157 (171)
T 4glq_A 132 QWQEIEIDQFSELASTGSLVLERLHF 157 (171)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999998887776654
No 49
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=20.03 E-value=28 Score=27.87 Aligned_cols=31 Identities=23% Similarity=0.702 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCeeEcccchHhhHhhhHHhhc
Q 015009 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHRS 60 (414)
Q Consensus 27 gNk~CADCGa~~P~WaSvn~GVFlC~~CSgIHR~ 60 (414)
.+..|.=||.... ...||++.|..|.++.|-
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 4567999997643 458999999999998873
Done!