BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015010
         (414 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1G0W|A Chain A, Crystal Structure Of Bovine Retinal Creatine Kinase
          Length = 380

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 205 SSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDM 264
           ++ +   +T E+++       P+GF     +   VDN   P    +  +  D +   YD+
Sbjct: 26  NNHMAKVLTPELYAELRAKSTPSGFTVDDVIQTGVDNPGHPYIMTVGCVAGDEES--YDV 83

Query: 265 MRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316
            + L D   +  +G +  KP    + DL      G   +DP+    L SR+R
Sbjct: 84  FKELFDPIIEDRHGGY--KPTDEHKTDLNPDNLQGGDDLDPNY--VLSSRVR 131


>pdb|1U6R|A Chain A, Transition State Analog Complex Of Muscle Creatine Kinase
           (R134k) Mutant
 pdb|1U6R|B Chain B, Transition State Analog Complex Of Muscle Creatine Kinase
           (R134k) Mutant
          Length = 380

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 205 SSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG---QDHKGLI 261
           ++ +   +T +++      E P+GF     +   VDN   P H  I  +G    D +   
Sbjct: 26  NNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDN---PGHPFIMTVGCVAGDEES-- 80

Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316
           Y + + L D   Q  +G F  KP    + DL      G   +DP     L SR+R
Sbjct: 81  YTVFKDLFDPIIQDRHGGF--KPTDKHKTDLNHENLKGGDDLDPHY--VLSSRVR 131


>pdb|2CRK|A Chain A, Muscle Creatine Kinase
          Length = 381

 Score = 29.3 bits (64), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 12/115 (10%)

Query: 205 SSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG---QDHKGLI 261
           ++ +   +T +++      E P+GF     +   VDN   P H  I  +G    D +   
Sbjct: 27  NNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDN---PGHPFIMTVGCVAGDEES-- 81

Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316
           Y + + L D   Q  +G F  KP    + DL      G   +DP     L SR+R
Sbjct: 82  YTVFKDLFDPIIQDRHGGF--KPTDKHKTDLNHENLKGGDDLDPHY--VLSSRVR 132


>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
 pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
           Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
          Length = 520

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 216 MFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG 254
            F +  PA  P G  ++ P S+A +    P+H +++++G
Sbjct: 76  QFEISGPASAPLGVSSNYPRSVARNIGADPAHAVLEVIG 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.141    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,595,017
Number of Sequences: 62578
Number of extensions: 520522
Number of successful extensions: 1000
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 997
Number of HSP's gapped (non-prelim): 7
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)