BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015010
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 34/213 (15%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL- 178
D GL + L +I ++ T DG +D F++ D + ++HL
Sbjct: 764 DHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDGEGCSFEEPHQLGRLNHLV 823
Query: 179 -EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSI 237
+A+ G+ I IE A H +S AI P +
Sbjct: 824 EQALSGRLDIRKGIE------DASHHSTSRRMRAI-------------------HVPPRV 858
Query: 238 AVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQ 296
+DN+ S HT+I++ G+D GL++D+ L + Q+S G VD+F +
Sbjct: 859 VIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTY--GMRAVDVFYVRD 916
Query: 297 ADGKKIVDPSKQDALCSRLRMELLRPLRVAVVN 329
G KI DP + +RLR LL L A V
Sbjct: 917 LLGMKITDPVR----LARLRETLLASLTSAPVT 945
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 267 TLKDYNTQVSYGRFFAKPRGNCEVDLFIMQA-----DGKKIVDPSKQDALCSRLRMELLR 321
L + Q G F +P ++ + QA D +K ++ + + R+R +
Sbjct: 796 ALDTFWVQDGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRA-IHV 854
Query: 322 PLRVAVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375
P RV + N D ++ E++GR RP + +D+T AL S+ I S I Y
Sbjct: 855 PPRVVIDNTASDRHTVI----EVNGRDRPGLLHDVTSALSSASLQISSAHITTY 904
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
+DR GLLHDVT L L I + TT R +D+F++ R+LL + + L
Sbjct: 876 RDRPGLLHDVTSALSSASLQISSAHI-TTYGMRAVDVFYV---RDLLGMKITDPVRLARL 931
Query: 179 EAVLGKTLISCEIELPG 195
L +L S + P
Sbjct: 932 RETLLASLTSAPVTTPA 948
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF 293
P + +DN+ S +HT+I++ G+D GL+YD+ R L + Q+S + G +D+F
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKI--STYGEKAIDVF 901
Query: 294 -IMQADGKKIVDPSKQDALCSRLRMELLRP 322
+ G K+ +K + RL L P
Sbjct: 902 YVKDVFGLKVTHENKLAQIRERLLHALADP 931
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 23/150 (15%)
Query: 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDP- 305
T + I DH GL + L + R F G +D+F +Q A G +
Sbjct: 745 TEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMA-LDVFTVQDAAGGGAFESG 803
Query: 306 ---SKQDALCSRLRMELLRPLRVAVVNRGPDA----------ELLVANP-------VELS 345
+K + ++ L+PL + P A +L+ N +E++
Sbjct: 804 DKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVPPRVLIDNNASTTHTVIEVN 863
Query: 346 GRGRPLVFYDITLALKILSISIFSVEIGRY 375
GR RP + YD+T AL L++ I S +I Y
Sbjct: 864 GRDRPGLLYDLTRALTNLTLQISSAKISTY 893
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKR-----REE 173
+DR GLL+D+T L L L I K+ST + + +D+F++ D L T + RE
Sbjct: 865 RDRPGLLYDLTRALTNLTLQISSAKISTYGE-KAIDVFYVKDVFGLKVTHENKLAQIRER 923
Query: 174 TIHHL 178
+H L
Sbjct: 924 LLHAL 928
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 232 SAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVD 291
+ P + VDN S +HT+I+I G+D G +Y + R L D Q+S R G VD
Sbjct: 823 TVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARV--STYGERVVD 880
Query: 292 LF-IMQADGKKIVDPSK 307
F + G KIV +K
Sbjct: 881 SFYVKDVFGMKIVHRAK 897
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT--RELLHTRKRREETIH 176
+DR G L+ VT L ++ + I +VST + RV+D F++ D +++H R + +
Sbjct: 846 RDRPGFLYAVTRALTDVAVQISSARVSTYGE-RVVDSFYVKDVFGMKIVH-RAKLAQIRE 903
Query: 177 HLEAVLGKTL 186
LEA + +T+
Sbjct: 904 ALEAAITQTV 913
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 32/192 (16%)
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
+DR+GL D+ + L + +V T+ G+ +D+F++ D
Sbjct: 743 KDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD------------------ 784
Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLE--LPAEQPNGFLASAPVS 236
V G CE A + L +A + ++E +EQ + S
Sbjct: 785 --VTGAPF-GCE------NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPS 835
Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296
+ +DN S T+++ G+D GL++ + +TL D + G VD F +Q
Sbjct: 836 VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI--DGYGERAVDAFYVQ 893
Query: 297 -ADGKKIVDPSK 307
+G K+ D K
Sbjct: 894 TTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 32/192 (16%)
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178
+DR+GL D+ + L + +V T+ G+ +D+F++ D
Sbjct: 743 KDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQD------------------ 784
Query: 179 EAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLE--LPAEQPNGFLASAPVS 236
V G CE A + L +A + ++E +EQ + S
Sbjct: 785 --VTGAPF-GCE------NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPS 835
Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296
+ +DN S T+++ G+D GL++ + +TL D + G VD F +Q
Sbjct: 836 VTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHI--DGYGERAVDAFYVQ 893
Query: 297 -ADGKKIVDPSK 307
+G K+ D K
Sbjct: 894 TTEGGKVTDTRK 905
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 32/193 (16%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179
DR L D+ E + + +V T+ G+ +D+F++ D
Sbjct: 741 DRPRLFVDLAEAITAAGANVMGARVFTSRAGQALDVFYVQDAS----------------- 783
Query: 180 AVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAV 239
G+ S + A + L A E + E Q G A+ ++ AV
Sbjct: 784 ---GQPFGSHDPR-------ALARLAETLACAARGEPVAREPRKPQDLGRTAAFAITPAV 833
Query: 240 --DNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQ 296
DN S + T+++ G+D GL+ + RT+ D + G VD F ++
Sbjct: 834 MLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHI--DGYGERAVDAFYVVD 891
Query: 297 ADGKKIVDPSKQD 309
ADG+K+ D K++
Sbjct: 892 ADGRKLTDARKRN 904
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF 293
P IA DN S +T+I++ +D GL+YD+ RTL N ++ A +
Sbjct: 837 PTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASA-VIATYGAQVVDSFY 895
Query: 294 IMQADGKKIVDPSKQDALCSRLRMELL 320
+ G K+ ++Q+ L +LR ++
Sbjct: 896 VKDMFGLKLHQKNRQETLEKKLRQAIV 922
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 72/177 (40%), Gaps = 22/177 (12%)
Query: 19 DCTVITVNCPDKTGLGCDLCRIILLFGLSI--SRGDLSKDGKWCYLVFWVVGKPTTRWSL 76
D T D G+ L + L G ++ +R +KDG + VFW+ + + +
Sbjct: 739 DATRACFALADHPGIFSRLAGALALVGANVVDARTYTTKDG-YATAVFWIQDSEGSPYEI 797
Query: 77 LK-NRLLEVCPSYFSTSRIYSYRLENQQQPKP-----------------PDVFLLKFWCF 118
+ RL + + L+++ + K D++ +
Sbjct: 798 SRLPRLTSMIDKTLKGEVVAREALKDRDKLKKREAQFRFPTHIAFDNEGSDIYTIIEVDT 857
Query: 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETI 175
+DR GLL+D+T L + I ++T +V+D F++ D L +K R+ET+
Sbjct: 858 RDRPGLLYDLTRTLAANNIYIASAVIATY-GAQVVDSFYVKDMFGLKLHQKNRQETL 913
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 28/175 (16%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ E RR I G I
Sbjct: 769 AQIYTTTDGRALDTIAISREYERDEDEGRRATRI-------------------GETIEQV 809
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G LP A+ +Q F VSI +N +S +T+I++ G D GL+
Sbjct: 810 LEGKLRLPDAVARRTTR----GKQHKAFSVEPEVSI--NNQWSELYTVIEVSGLDRPGLL 863
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRL 315
Y++ + N ++ G D+F + G +I P++Q A+ S L
Sbjct: 864 YELTTAISKLNLNIASAH--VATFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 66/175 (37%), Gaps = 28/175 (16%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ E RR I G I
Sbjct: 769 AQIYTTTDGRALDTIAISREYERDEDEGRRATRI-------------------GETIEQV 809
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G LP A+ +Q F VSI +N +S +T+I++ G D GL+
Sbjct: 810 LEGKLRLPDAVARRT----TRGKQHKAFSVEPEVSI--NNQWSELYTVIEVSGLDRPGLL 863
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRL 315
Y++ + N ++ G D+F + G +I P++Q A+ S L
Sbjct: 864 YELTTAISKLNLNIASAHV--ATFGERARDVFYVTDLLGAQINAPTRQAAIKSAL 916
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 76/203 (37%), Gaps = 31/203 (15%)
Query: 117 CFQ--DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREET 174
CF D G+ + L + + + TT DG V D F+I D
Sbjct: 721 CFAMADHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDAEG----------- 769
Query: 175 IHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP 234
H EA L ++ E+ A D + S + ++ F + P
Sbjct: 770 -HPYEAARLPRLSQMILKTLKGEVVA------------RDALKSRDKIKKREKAF--NVP 814
Query: 235 VSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF- 293
I DN S +T+I++ +D GL+YD+ R L N ++ G VD F
Sbjct: 815 THITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANA--VIATYGEQVVDSFY 872
Query: 294 IMQADGKKIVDPSKQDALCSRLR 316
+ G K +KQ L ++LR
Sbjct: 873 VKDMFGLKYHSEAKQRTLETKLR 895
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-ELLHTRKRR 171
D+ GLL DV+ V EL L+I+ K++T + + D F +T+ + E L R+R+
Sbjct: 813 DKAGLLADVSLVFSELNLSIQNAKITTIGE-KAQDFFILTNAKGEALSERERQ 864
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 8 VVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV 67
V +++ A++P T++ + PD+ GL L RI L F LS+ ++ G+ VF++
Sbjct: 804 VTILNDAQRP--VTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Score = 35.4 bits (80), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 8 VVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV 67
V +++ A++P T++ + PD+ GL L RI L F LS+ ++ G+ VF++
Sbjct: 804 VTILNDAQRP--VTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 8 VVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV 67
V +++ A++P T++ + PD+ GL L RI L F LS+ ++ G+ VF++
Sbjct: 804 VTILNDAQRP--VTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Score = 35.4 bits (80), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARLGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|Q4QJM6|GLND_HAEI8 [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
86-028NP) GN=glnD PE=3 SV=1
Length = 863
Score = 37.0 bits (84), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 75/197 (38%), Gaps = 35/197 (17%)
Query: 116 WCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-ELLHTRKRREET 174
+C QD+ L + V + + +I ++ TT DG V D F IT+ EL+ +RRE
Sbjct: 692 YC-QDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE-- 748
Query: 175 IHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP 234
LE L TL +LP I +P Q F
Sbjct: 749 ---LEQAL--TLALQSEKLPALSI----------------------VPNRQLQHFTVQTD 781
Query: 235 VSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI 294
V +N HT ++++ D GL+ + + + N + + G D FI
Sbjct: 782 VRFLQEN--KKEHTQMELVALDKAGLLAQVSQIFTELNLNLLNAKI--TTVGEKAEDFFI 837
Query: 295 MQADGKKIVDPSKQDAL 311
+ + +D +++ L
Sbjct: 838 LTNQFGQALDSQQREIL 854
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 36.6 bits (83), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETI-HHL 178
DR GLL D+T V+ +L L I +++T + +V+D F++TD T R+ +I L
Sbjct: 848 DRPGLLADMTAVIADLSLDIHSARITTFGE-KVIDTFYVTDLFGQKVTNDNRQASIAQRL 906
Query: 179 EAVLGKTLISCEIELPG-----PEITACCHGSSFLPSAIT 213
+AV+ + +P P++ A LP+A T
Sbjct: 907 KAVMSEQEDELRDRMPNGIIAHPDVAA-------LPAART 939
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + ++ E +L+++ K++T + RV D+FFITD
Sbjct: 822 DRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 862
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + ++ E +L+++ K++T + RV D+FFITD
Sbjct: 822 DRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 862
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + ++ E +L+++ K++T + RV D+FFITD
Sbjct: 822 DRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 862
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + ++ E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARIGKIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 36.2 bits (82), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETI-HHL 178
DR GLL +VT VL +L L I ++T + +V+D F++TD T + R+ I L
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTDLVGSKITSENRQMNIAARL 910
Query: 179 EAVLGKTLISCEIELPGPEIT-----ACCHGS 205
+AVL + +P I HGS
Sbjct: 911 KAVLAGEVDEARERMPSGIIAPTPVPRASHGS 942
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 49 SRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYR----LENQQQ 104
S+G + K G+ + + T N+L + P F + + ++NQ
Sbjct: 785 SQGGMIKSGEHLNRMMQAIEDAATSHIRSSNKLAALRPPLFWRGKAFHVEPLVFIDNQ-- 842
Query: 105 PKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160
D F + QDR LLHD+ L LTI ++T + R +D+F+++D
Sbjct: 843 --ASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGE-RAVDVFYVSD 895
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARIGRIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 66/175 (37%), Gaps = 28/175 (16%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + L I
Sbjct: 766 AQIFTTADGRALDTILISREFDRDEDERRRAERVGRL-------------------IEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G S+LP I P F P + N+ S ++I++ G D GL+
Sbjct: 807 LSGKSWLPEMIEKRT----KPKRGAKVF--KIPPRAEIRNTLSNRFSVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRL 315
++ TL D + ++ G +D F + G+KI P++ + +RL
Sbjct: 861 SEITGTLSDLSLDIASAHI--TTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRL 913
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL V + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARVGGIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETI-HHL 178
DR GLL +VT VL +L L I ++T + +V+D F++TD T + R+ I L
Sbjct: 852 DRTGLLSEVTAVLSDLSLDIASAHITTFGE-KVIDTFYVTDLVGSKITSENRQMNIAARL 910
Query: 179 EAVLGKTLISCEIELP 194
+AVL + +P
Sbjct: 911 KAVLAGEVDEARERMP 926
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 8 VVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVV 67
V +++ A++P T++ + PD+ GL + RI L F +S+ ++ G+ VF++
Sbjct: 804 VTILNDAQRP--VTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFIT 861
Score = 35.4 bits (80), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +++++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARIGRIFLEFDISLQNAKIATLGE-RVEDVFFITDA 863
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT 161
DR GLL + + E +L+++ K++T + RV D+FFITD
Sbjct: 823 DRPGLLARIGGIFLEFDLSLQNAKIATLGE-RVEDVFFITDA 863
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR 162
DR GLL + + + +L+++ K++T + RV D+F+ITD R
Sbjct: 823 DRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR 864
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR 162
DR GLL + + + +L+++ K++T + RV D+F+ITD R
Sbjct: 823 DRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR 864
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR 162
DR GLL + + + +L+++ K++T + RV D+F+ITD R
Sbjct: 823 DRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR 864
>sp|A5UBF9|GLND_HAEIE [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
PittEE) GN=glnD PE=3 SV=1
Length = 863
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 35/197 (17%)
Query: 116 WCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-ELLHTRKRREET 174
+C QD+ L + V + + +I ++ TT DG V D F IT+ EL+ +RRE
Sbjct: 692 YC-QDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE-- 748
Query: 175 IHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP 234
LE L TL +L IT P Q F
Sbjct: 749 ---LEQAL--TLALQSEKLSALSIT----------------------PNRQLQHFTVQTD 781
Query: 235 VSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI 294
V +N HT ++++ D GL+ + + + N + + G D FI
Sbjct: 782 VRFLHEN--KKEHTEMELVALDKAGLLAQVSQIFSELNLNLLNAKI--TTVGEKAEDFFI 837
Query: 295 MQADGKKIVDPSKQDAL 311
+ + +D +++ L
Sbjct: 838 LTNQFGQALDSQQREIL 854
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR 162
DR GLL + + + +L+++ K++T + RV D+F+ITD R
Sbjct: 823 DRPGLLARIGGIFLDFDLSVQNAKIATLGE-RVEDVFYITDAR 864
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IM 295
+ ++N +S +T+I++ G D GL+Y++ + N ++ G D+F +
Sbjct: 838 VTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASA--HVATFGERARDVFYVT 895
Query: 296 QADGKKIVDPSKQDALCSRL 315
G +I P++Q A+ S L
Sbjct: 896 DLLGAQINAPTRQSAIKSAL 915
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IM 295
+ ++N +S HT+I++ G D GL++ + + N ++ G D+F +
Sbjct: 837 VTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASA--HVATFGERARDVFYVT 894
Query: 296 QADGKKIVDPSKQDAL 311
G +I P++Q A+
Sbjct: 895 DLLGARITAPTRQAAI 910
>sp|P43919|GLND_HAEIN [Protein-PII] uridylyltransferase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=glnD PE=3 SV=1
Length = 863
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 33/158 (20%)
Query: 116 WCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-ELLHTRKRREET 174
+C QD+ L + V + + +I ++ TT DG V D F IT+ EL+ +RRE
Sbjct: 692 YC-QDQPHLFNKVVSTIGAKKFSIHDAQIITTQDGYVFDSFIITELNGELVEFDRRRE-- 748
Query: 175 IHHLEAVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP 234
LE L L S +LP I +P Q F
Sbjct: 749 ---LEQALTVALQSE--KLPALSI----------------------VPNRQLQHFTVQTD 781
Query: 235 VSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYN 272
V +N HT ++++ D GL+ + + + N
Sbjct: 782 VRFLQEN--KKEHTEMELVALDKAGLLAQVSQIFTELN 817
>sp|Q9LS08|BH032_ARATH Transcription factor AIG1 OS=Arabidopsis thaliana GN=BHLH32 PE=1
SV=1
Length = 344
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 116 WCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT 159
+C QDR L+HDV L L L + +++T GRV ++ F++
Sbjct: 219 FCCQDRTDLMHDVINALKSLRLRTLKAEIATV-GGRVKNILFLS 261
>sp|Q92XW1|CYSA1_RHIME Sulfate/thiosulfate import ATP-binding protein CysA 1 OS=Rhizobium
meliloti (strain 1021) GN=cysA1 PE=3 SV=1
Length = 347
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLH----------TRKRREETIHHLEAVLGKTLISCEI 191
++ + PDG+ LFF EL+ T RR HLE LGKT S E+
Sbjct: 261 LRAANEPDGQAT-LFFRPHDVELIEGGSGCLAGRVTASRRVAGTRHLELDLGKTQSSIEV 319
Query: 192 ELPGPEITACC 202
ELP PE+ +
Sbjct: 320 ELP-PELASSA 329
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 237 IAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IM 295
+ V+N +S HT+I++ G D GL++ + + N ++ G D+F +
Sbjct: 839 VIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASA--HVATFGERARDVFYVT 896
Query: 296 QADGKKIVDPSKQDAL 311
G +I P++Q A+
Sbjct: 897 DLLGARITAPTRQAAI 912
>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1
Length = 1961
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 9/106 (8%)
Query: 89 FSTSRIYSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP 148
FS I R+EN LLK W +D K T+ L + I R+ + T
Sbjct: 1502 FSVDEINQIRVENPNSLISQSFMLLKKWVTRDGKNA---TTDALTSVLTKINRIDIVTLL 1558
Query: 149 DGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELP 194
+G + D I+ TR E + H + V G E+E P
Sbjct: 1559 EGPIFDYGNISGTRSFAD-----ENNVFH-DPVDGHPSFQVELETP 1598
>sp|Q18JI5|PURL_HALWD Phosphoribosylformylglycinamidine synthase 2 OS=Haloquadratum
walsbyi (strain DSM 16790) GN=purL PE=3 SV=1
Length = 725
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 1 MGLMYEDVVVISQAEKPGDCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWC 60
+GL+ ++ +V ++A+ PG+ V+ N + GLG G S + DLS+D +
Sbjct: 186 IGLLTDERLVTAEAQSPGNKLVLVGNATGRDGLG----------GASFASEDLSEDAETE 235
Query: 61 YLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYR 98
VG P T + RL+E + I S R
Sbjct: 236 DRPAVQVGDPYT-----EKRLIEANEELITAELIQSAR 268
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIH-HL 178
DR GLL +VT VL +L L I +++T + +V+D F++ D T + R+ +I L
Sbjct: 847 DRIGLLAEVTAVLADLSLDIHSARITTFGE-KVIDTFYVIDLVGQKITNENRQGSISVRL 905
Query: 179 EAVLGK 184
+AV+ +
Sbjct: 906 KAVMSE 911
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 30/195 (15%)
Query: 142 VKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEIELPGPEITAC 201
++ TT DGR +D I+ + +RR E + G I
Sbjct: 766 AQIFTTSDGRALDTILISREFDTDDDERRRAERV-------------------GKVIEDV 806
Query: 202 CHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLI 261
G + LP D + P + F V I +N+ S T+I++ G D GL+
Sbjct: 807 LSGKAHLP----DMLAKRTKPKKAARAFKVEPRVEI--NNTLSNKFTVIEVEGLDRPGLL 860
Query: 262 YDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRMELL 320
++ + D + ++ G +D F + G KI + ++Q + +L + LL
Sbjct: 861 SELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKL-LALL 917
Query: 321 RPLRVAVVN-RGPDA 334
A N R P A
Sbjct: 918 GAENGARTNGRSPQA 932
>sp|A8GIE8|GLND_SERP5 [Protein-PII] uridylyltransferase OS=Serratia proteamaculans
(strain 568) GN=glnD PE=3 SV=1
Length = 892
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDT-RELLHTRKRRE 172
D+ GLL V EV +L L++ ++ST + RV DLF + D+ R L+ RR+
Sbjct: 825 DQPGLLARVGEVFADLNLSLHGARISTIGE-RVEDLFILADSDRRALNPETRRK 877
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 71/197 (36%), Gaps = 28/197 (14%)
Query: 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179
D LL +T I ++ TT DGR +D I+ + +RR E +
Sbjct: 744 DHPRLLSIITGACAAAGANIVDAQIFTTGDGRALDTILISREFDTDDDERRRAERV---- 799
Query: 180 AVLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAV 239
G I G + LP D + P F V I
Sbjct: 800 ---------------GKVIEDVLSGKAHLP----DVLAKRTKPKRAAKAFKVEPRVEI-- 838
Query: 240 DNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQAD 298
+N+ S T+I++ G D GL+ ++ + D + ++ G +D F +
Sbjct: 839 NNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHI--TTFGEKVIDSFYVTDLV 896
Query: 299 GKKIVDPSKQDALCSRL 315
G KI + ++Q + +L
Sbjct: 897 GHKISNATRQGNIRRKL 913
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,951,008
Number of Sequences: 539616
Number of extensions: 6782399
Number of successful extensions: 13415
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 13362
Number of HSP's gapped (non-prelim): 109
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)