Query 015010
Match_columns 414
No_of_seqs 323 out of 1765
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015010.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015010hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 2.1E-28 4.5E-33 267.8 24.7 174 232-412 662-851 (854)
2 PRK05007 PII uridylyl-transfer 100.0 3.8E-28 8.2E-33 266.6 24.8 173 233-412 687-876 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 5.6E-27 1.2E-31 256.6 25.3 180 106-319 673-853 (854)
4 PRK05007 PII uridylyl-transfer 100.0 9.1E-27 2E-31 255.7 25.7 183 106-321 697-880 (884)
5 PRK00275 glnD PII uridylyl-tra 99.9 3.3E-26 7.1E-31 251.4 26.6 184 108-322 702-888 (895)
6 PRK03059 PII uridylyl-transfer 99.9 3.4E-25 7.3E-30 242.5 25.7 181 107-320 675-855 (856)
7 PRK04374 PII uridylyl-transfer 99.9 4.8E-25 1E-29 240.8 25.9 179 108-320 688-867 (869)
8 TIGR01693 UTase_glnD [Protein- 99.9 5.3E-25 1.2E-29 242.3 25.0 173 234-412 655-847 (850)
9 PRK00275 glnD PII uridylyl-tra 99.9 9.9E-25 2.2E-29 239.7 25.3 173 234-411 688-882 (895)
10 TIGR01693 UTase_glnD [Protein- 99.9 1.6E-24 3.5E-29 238.5 25.3 184 106-319 664-849 (850)
11 PRK05092 PII uridylyl-transfer 99.9 3.1E-24 6.7E-29 237.8 26.6 187 107-322 729-917 (931)
12 PRK04374 PII uridylyl-transfer 99.9 5.5E-24 1.2E-28 232.6 24.8 169 235-412 677-864 (869)
13 COG2844 GlnD UTP:GlnB (protein 99.9 6.6E-24 1.4E-28 221.2 19.7 172 233-411 670-858 (867)
14 PRK03381 PII uridylyl-transfer 99.9 2.1E-23 4.6E-28 226.4 24.2 175 108-315 597-772 (774)
15 COG2844 GlnD UTP:GlnB (protein 99.9 1.5E-23 3.3E-28 218.5 20.7 180 108-320 682-862 (867)
16 PRK05092 PII uridylyl-transfer 99.9 6.5E-23 1.4E-27 227.3 25.7 174 233-411 718-911 (931)
17 PRK03381 PII uridylyl-transfer 99.9 6.2E-23 1.3E-27 222.8 24.0 166 233-411 586-773 (774)
18 PRK03059 PII uridylyl-transfer 99.9 1.2E-22 2.5E-27 222.6 24.3 170 234-412 665-852 (856)
19 cd04895 ACT_ACR_1 ACT domain-c 99.8 2.1E-20 4.6E-25 142.2 10.4 69 340-412 2-70 (72)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 3.1E-20 6.6E-25 142.3 10.2 68 340-411 2-69 (75)
21 cd04894 ACT_ACR-like_1 ACT dom 99.8 3.6E-20 7.8E-25 132.4 7.9 66 21-86 1-69 (69)
22 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.1E-18 2.3E-23 133.8 11.3 74 247-322 1-75 (75)
23 cd04896 ACT_ACR-like_3 ACT dom 99.8 1E-18 2.2E-23 133.9 9.7 68 340-412 1-70 (75)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 1.9E-17 4.2E-22 126.9 10.7 75 248-322 1-75 (75)
25 cd04895 ACT_ACR_1 ACT domain-c 99.7 2.6E-16 5.6E-21 119.8 10.6 68 247-316 1-69 (72)
26 cd04927 ACT_ACR-like_2 Second 99.6 2E-15 4.3E-20 117.2 11.3 72 112-184 2-73 (76)
27 cd04900 ACT_UUR-like_1 ACT dom 99.6 5.5E-15 1.2E-19 113.8 10.8 71 111-182 2-73 (73)
28 cd04925 ACT_ACR_2 ACT domain-c 99.6 2.1E-14 4.5E-19 110.9 10.7 71 111-183 1-73 (74)
29 cd04925 ACT_ACR_2 ACT domain-c 99.6 2.8E-14 6E-19 110.2 10.0 68 340-411 1-69 (74)
30 cd04900 ACT_UUR-like_1 ACT dom 99.6 4E-14 8.6E-19 109.0 10.8 71 248-319 2-73 (73)
31 cd04898 ACT_ACR-like_4 ACT dom 99.6 3.7E-15 8E-20 111.2 4.5 73 340-413 1-77 (77)
32 cd04927 ACT_ACR-like_2 Second 99.5 9.9E-14 2.1E-18 107.6 11.2 71 249-321 2-73 (76)
33 PRK11589 gcvR glycine cleavage 99.5 1.9E-12 4.1E-17 117.5 16.5 135 109-295 7-143 (190)
34 cd04928 ACT_TyrKc Uncharacteri 99.4 9.5E-13 2.1E-17 99.0 9.9 66 111-182 2-67 (68)
35 PRK11589 gcvR glycine cleavage 99.4 9.9E-12 2.2E-16 112.8 16.1 155 246-410 7-169 (190)
36 PRK00227 glnD PII uridylyl-tra 99.3 3.1E-11 6.8E-16 128.9 16.0 144 248-412 547-692 (693)
37 cd04926 ACT_ACR_4 C-terminal 99.3 2.3E-11 5.1E-16 93.3 10.3 67 340-411 2-68 (72)
38 cd04926 ACT_ACR_4 C-terminal 99.3 3E-11 6.4E-16 92.7 10.6 67 111-179 2-68 (72)
39 PRK00227 glnD PII uridylyl-tra 99.3 3.5E-11 7.6E-16 128.5 14.4 142 22-184 548-692 (693)
40 cd04928 ACT_TyrKc Uncharacteri 99.2 5.8E-11 1.3E-15 89.3 9.5 64 21-84 2-66 (68)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 9.3E-11 2E-15 89.0 10.6 70 111-182 1-70 (70)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.1 5.6E-10 1.2E-14 84.7 10.3 69 248-319 1-70 (70)
43 COG2716 GcvR Glycine cleavage 99.0 2.6E-09 5.6E-14 93.2 10.5 157 109-317 4-161 (176)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.5E-08 3.2E-13 76.5 10.6 68 112-181 2-69 (70)
45 cd04873 ACT_UUR-ACR-like ACT d 98.8 5.8E-08 1.3E-12 73.2 10.3 67 249-318 2-69 (70)
46 COG2716 GcvR Glycine cleavage 98.8 6E-08 1.3E-12 84.8 10.8 141 246-398 4-149 (176)
47 PF13740 ACT_6: ACT domain; PD 98.7 2.1E-07 4.6E-12 72.0 9.9 67 110-184 2-68 (76)
48 cd04893 ACT_GcvR_1 ACT domains 98.4 1.2E-06 2.7E-11 67.9 8.5 64 111-182 2-65 (77)
49 PF01842 ACT: ACT domain; Int 98.4 3.3E-06 7.2E-11 62.6 9.6 63 111-181 1-64 (66)
50 PF01842 ACT: ACT domain; Int 98.4 2.9E-06 6.2E-11 63.0 8.6 64 248-318 1-64 (66)
51 PF13740 ACT_6: ACT domain; PD 98.2 1.1E-05 2.4E-10 62.4 9.8 65 247-319 2-66 (76)
52 cd04870 ACT_PSP_1 CT domains f 98.2 4.6E-06 1E-10 64.3 7.0 65 112-183 1-65 (75)
53 cd04894 ACT_ACR-like_1 ACT dom 98.1 8.6E-06 1.9E-10 59.0 6.5 68 111-182 1-68 (69)
54 cd04870 ACT_PSP_1 CT domains f 98.1 1.3E-05 2.7E-10 61.8 7.4 52 341-396 1-52 (75)
55 COG4747 ACT domain-containing 98.0 0.00063 1.4E-08 56.0 15.1 114 22-160 5-118 (142)
56 cd04872 ACT_1ZPV ACT domain pr 98.0 2.1E-05 4.5E-10 62.6 6.5 67 111-183 2-68 (88)
57 PRK00194 hypothetical protein; 97.9 3.5E-05 7.6E-10 61.4 6.9 67 110-182 3-69 (90)
58 cd04875 ACT_F4HF-DF N-terminal 97.9 6.2E-05 1.3E-09 57.7 7.9 67 112-183 1-68 (74)
59 COG4747 ACT domain-containing 97.9 0.0016 3.4E-08 53.7 16.2 112 112-295 5-116 (142)
60 cd04893 ACT_GcvR_1 ACT domains 97.8 9.9E-05 2.1E-09 57.2 8.3 65 21-86 2-66 (77)
61 cd04869 ACT_GcvR_2 ACT domains 97.8 8.6E-05 1.9E-09 57.7 8.0 66 112-183 1-71 (81)
62 PF13291 ACT_4: ACT domain; PD 97.7 0.00018 3.9E-09 55.9 8.1 63 248-315 7-69 (80)
63 PF13291 ACT_4: ACT domain; PD 97.7 0.00025 5.5E-09 55.1 8.6 64 110-179 6-70 (80)
64 cd04869 ACT_GcvR_2 ACT domains 97.7 0.00027 5.9E-09 54.8 8.5 66 22-87 1-72 (81)
65 PRK00194 hypothetical protein; 97.6 0.00022 4.8E-09 56.8 7.3 68 20-87 3-71 (90)
66 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00071 1.5E-08 51.5 9.4 62 113-180 2-63 (74)
67 cd04875 ACT_F4HF-DF N-terminal 97.6 0.00054 1.2E-08 52.4 8.4 65 22-86 1-68 (74)
68 cd04872 ACT_1ZPV ACT domain pr 97.5 0.00033 7.1E-09 55.6 7.1 67 21-87 2-69 (88)
69 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0014 3.1E-08 49.7 9.6 61 250-316 2-62 (74)
70 cd04898 ACT_ACR-like_4 ACT dom 97.4 0.00022 4.8E-09 53.8 4.3 70 250-319 3-74 (77)
71 PRK13010 purU formyltetrahydro 97.3 0.001 2.2E-08 64.7 8.4 69 110-183 9-79 (289)
72 COG3830 ACT domain-containing 97.3 0.00037 8.1E-09 54.8 4.2 69 110-184 3-71 (90)
73 PRK13010 purU formyltetrahydro 97.2 0.01 2.2E-07 57.7 14.4 35 247-281 9-43 (289)
74 TIGR00655 PurU formyltetrahydr 97.2 0.0019 4.1E-08 62.5 9.2 64 112-180 2-66 (280)
75 TIGR00655 PurU formyltetrahydr 97.2 0.013 2.8E-07 56.8 14.9 108 249-366 2-111 (280)
76 PRK07431 aspartate kinase; Pro 97.1 0.54 1.2E-05 50.5 29.2 264 26-371 277-554 (587)
77 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0053 1.2E-07 45.7 9.3 62 113-180 1-66 (73)
78 PRK06027 purU formyltetrahydro 97.1 0.0026 5.7E-08 61.8 9.2 71 109-184 5-76 (286)
79 PRK13011 formyltetrahydrofolat 97.1 0.024 5.3E-07 55.1 15.7 35 247-281 7-41 (286)
80 cd04889 ACT_PDH-BS-like C-term 97.1 0.0025 5.4E-08 45.7 6.7 47 113-160 1-47 (56)
81 PRK13562 acetolactate synthase 97.0 0.0039 8.5E-08 48.7 8.0 66 249-319 4-69 (84)
82 COG3830 ACT domain-containing 97.0 0.0011 2.4E-08 52.2 4.5 33 247-281 3-35 (90)
83 COG0788 PurU Formyltetrahydrof 97.0 0.0033 7.2E-08 59.2 8.5 69 109-182 6-75 (287)
84 PRK08178 acetolactate synthase 97.0 0.0054 1.2E-07 49.2 8.3 65 248-319 9-73 (96)
85 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0082 1.8E-07 44.7 9.0 63 250-317 1-66 (73)
86 PRK13011 formyltetrahydrofolat 96.9 0.0045 9.8E-08 60.1 9.1 69 110-184 7-76 (286)
87 PRK06737 acetolactate synthase 96.9 0.0063 1.4E-07 46.9 8.1 65 249-319 4-68 (76)
88 cd04888 ACT_PheB-BS C-terminal 96.9 0.0083 1.8E-07 45.6 8.9 63 112-180 2-65 (76)
89 cd04877 ACT_TyrR N-terminal AC 96.9 0.0067 1.4E-07 46.3 8.0 57 249-315 2-58 (74)
90 cd04877 ACT_TyrR N-terminal AC 96.9 0.0073 1.6E-07 46.1 8.2 34 112-146 2-35 (74)
91 PRK06027 purU formyltetrahydro 96.8 0.048 1E-06 53.0 15.6 66 246-317 5-72 (286)
92 TIGR00119 acolac_sm acetolacta 96.8 0.012 2.5E-07 52.0 9.8 65 111-182 2-67 (157)
93 PRK08178 acetolactate synthase 96.8 0.011 2.4E-07 47.4 8.6 68 107-182 5-73 (96)
94 PRK11895 ilvH acetolactate syn 96.8 0.013 2.9E-07 51.9 10.0 65 111-182 3-68 (161)
95 cd04909 ACT_PDH-BS C-terminal 96.7 0.016 3.5E-07 43.3 8.9 48 111-159 2-50 (69)
96 PRK06737 acetolactate synthase 96.7 0.017 3.7E-07 44.5 8.7 64 111-181 3-67 (76)
97 cd04908 ACT_Bt0572_1 N-termina 96.6 0.017 3.7E-07 43.0 8.4 38 111-149 2-39 (66)
98 PRK08577 hypothetical protein; 96.6 0.033 7.2E-07 47.9 11.4 54 243-296 52-105 (136)
99 cd04879 ACT_3PGDH-like ACT_3PG 96.6 0.012 2.6E-07 43.4 7.7 44 342-389 2-47 (71)
100 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.019 4.1E-07 43.4 8.8 62 112-179 2-64 (79)
101 CHL00100 ilvH acetohydroxyacid 96.6 0.017 3.7E-07 51.8 9.6 66 249-320 4-69 (174)
102 cd04888 ACT_PheB-BS C-terminal 96.6 0.019 4.2E-07 43.5 8.7 62 249-316 2-64 (76)
103 PRK13562 acetolactate synthase 96.5 0.016 3.5E-07 45.3 8.0 66 111-182 3-69 (84)
104 cd04878 ACT_AHAS N-terminal AC 96.5 0.027 5.8E-07 41.7 9.0 61 112-179 2-63 (72)
105 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.021 4.6E-07 43.1 8.4 63 249-316 2-64 (79)
106 TIGR00119 acolac_sm acetolacta 96.5 0.024 5.2E-07 50.1 9.7 66 249-320 3-68 (157)
107 cd04874 ACT_Af1403 N-terminal 96.4 0.025 5.3E-07 42.0 8.4 48 112-160 2-49 (72)
108 cd04889 ACT_PDH-BS-like C-term 96.4 0.011 2.4E-07 42.3 6.1 47 342-391 1-47 (56)
109 PRK11895 ilvH acetolactate syn 96.4 0.028 6.1E-07 49.8 9.8 66 249-320 4-69 (161)
110 PRK11152 ilvM acetolactate syn 96.4 0.024 5.1E-07 43.7 8.1 63 111-181 4-67 (76)
111 COG0788 PurU Formyltetrahydrof 96.4 0.019 4.1E-07 54.2 8.8 36 246-281 6-41 (287)
112 cd04878 ACT_AHAS N-terminal AC 96.3 0.041 9E-07 40.6 9.0 61 250-316 3-63 (72)
113 PRK11152 ilvM acetolactate syn 96.3 0.029 6.2E-07 43.3 8.0 65 248-319 4-68 (76)
114 cd04905 ACT_CM-PDT C-terminal 96.3 0.048 1E-06 42.2 9.5 66 248-317 2-68 (80)
115 cd04909 ACT_PDH-BS C-terminal 96.3 0.049 1.1E-06 40.6 9.2 34 248-281 2-35 (69)
116 CHL00100 ilvH acetohydroxyacid 96.3 0.034 7.4E-07 49.9 9.6 66 111-183 3-69 (174)
117 cd04905 ACT_CM-PDT C-terminal 96.2 0.061 1.3E-06 41.6 9.6 67 111-180 2-68 (80)
118 cd04931 ACT_PAH ACT domain of 96.2 0.047 1E-06 43.6 9.0 72 244-320 11-83 (90)
119 cd04879 ACT_3PGDH-like ACT_3PG 96.2 0.023 5E-07 41.8 6.8 46 113-159 2-48 (71)
120 cd04908 ACT_Bt0572_1 N-termina 96.1 0.022 4.7E-07 42.4 6.5 38 341-380 3-40 (66)
121 cd04902 ACT_3PGDH-xct C-termin 96.1 0.033 7.2E-07 41.8 7.5 47 113-160 2-49 (73)
122 PRK04435 hypothetical protein; 96.1 0.064 1.4E-06 46.9 10.2 53 107-160 66-118 (147)
123 cd04903 ACT_LSD C-terminal ACT 96.1 0.056 1.2E-06 39.8 8.6 47 113-160 2-49 (71)
124 cd04884 ACT_CBS C-terminal ACT 96.0 0.047 1E-06 41.2 8.1 46 113-159 2-49 (72)
125 cd04882 ACT_Bt0572_2 C-termina 96.0 0.038 8.3E-07 40.4 7.4 45 113-158 2-47 (65)
126 cd04903 ACT_LSD C-terminal ACT 96.0 0.044 9.4E-07 40.4 7.9 33 342-374 2-34 (71)
127 PRK08577 hypothetical protein; 96.0 0.077 1.7E-06 45.6 10.2 50 109-159 55-105 (136)
128 cd04931 ACT_PAH ACT domain of 96.0 0.036 7.8E-07 44.3 7.4 66 341-411 16-83 (90)
129 cd04876 ACT_RelA-SpoT ACT dom 95.9 0.089 1.9E-06 37.8 8.8 46 113-159 1-46 (71)
130 cd02116 ACT ACT domains are co 95.8 0.098 2.1E-06 35.6 8.4 35 113-148 1-35 (60)
131 cd04901 ACT_3PGDH C-terminal A 95.8 0.012 2.6E-07 43.8 3.8 58 342-408 2-59 (69)
132 cd04880 ACT_AAAH-PDT-like ACT 95.7 0.045 9.8E-07 41.7 6.9 48 343-394 3-50 (75)
133 cd04902 ACT_3PGDH-xct C-termin 95.7 0.045 9.8E-07 41.0 6.8 45 343-389 3-47 (73)
134 PRK07431 aspartate kinase; Pro 95.6 2 4.4E-05 46.1 21.3 189 111-372 271-473 (587)
135 cd04882 ACT_Bt0572_2 C-termina 95.6 0.056 1.2E-06 39.5 6.7 33 342-374 2-34 (65)
136 PRK04435 hypothetical protein; 95.5 0.13 2.9E-06 44.9 9.9 71 239-315 61-132 (147)
137 cd04929 ACT_TPH ACT domain of 95.5 0.05 1.1E-06 41.7 6.3 51 342-396 3-53 (74)
138 cd04880 ACT_AAAH-PDT-like ACT 95.5 0.14 3.1E-06 38.9 8.8 64 250-317 2-66 (75)
139 cd04876 ACT_RelA-SpoT ACT dom 95.5 0.13 2.7E-06 36.9 8.3 32 250-281 1-32 (71)
140 cd04883 ACT_AcuB C-terminal AC 95.4 0.17 3.7E-06 37.8 9.1 48 111-159 2-50 (72)
141 cd04884 ACT_CBS C-terminal ACT 95.4 0.081 1.8E-06 39.9 7.2 32 250-281 2-33 (72)
142 cd04901 ACT_3PGDH C-terminal A 95.4 0.025 5.4E-07 42.0 4.3 46 113-160 2-47 (69)
143 cd04883 ACT_AcuB C-terminal AC 95.2 0.22 4.7E-06 37.2 9.0 34 248-281 2-35 (72)
144 PRK11899 prephenate dehydratas 95.2 0.077 1.7E-06 51.4 7.9 55 340-398 195-249 (279)
145 cd04904 ACT_AAAH ACT domain of 95.2 0.075 1.6E-06 40.6 6.3 49 342-394 3-51 (74)
146 cd04904 ACT_AAAH ACT domain of 95.1 0.13 2.8E-06 39.3 7.5 48 250-299 3-51 (74)
147 cd02116 ACT ACT domains are co 95.1 0.16 3.5E-06 34.4 7.5 33 342-374 1-33 (60)
148 PRK07334 threonine dehydratase 95.1 0.16 3.5E-06 51.9 10.3 65 110-180 326-394 (403)
149 PF13710 ACT_5: ACT domain; PD 94.9 0.12 2.7E-06 38.2 6.7 58 256-319 1-58 (63)
150 PRK07334 threonine dehydratase 94.9 0.17 3.6E-06 51.8 9.8 65 248-317 327-394 (403)
151 cd04874 ACT_Af1403 N-terminal 94.8 0.16 3.5E-06 37.5 7.3 34 341-374 2-35 (72)
152 PRK10872 relA (p)ppGpp synthet 94.8 0.22 4.7E-06 54.5 10.8 65 247-316 666-730 (743)
153 PF13710 ACT_5: ACT domain; PD 94.7 0.096 2.1E-06 38.8 5.7 56 120-181 1-57 (63)
154 cd04929 ACT_TPH ACT domain of 94.4 0.28 6.1E-06 37.5 7.8 49 250-300 3-52 (74)
155 PRK06635 aspartate kinase; Rev 94.0 6.1 0.00013 40.3 19.0 110 109-277 261-373 (404)
156 COG1707 ACT domain-containing 94.0 0.18 4E-06 44.3 6.6 47 249-295 4-50 (218)
157 PRK11899 prephenate dehydratas 93.6 0.43 9.4E-06 46.2 9.3 53 247-301 194-247 (279)
158 PRK10872 relA (p)ppGpp synthet 93.6 0.37 8E-06 52.7 9.7 65 110-180 666-731 (743)
159 cd04930 ACT_TH ACT domain of t 93.6 0.19 4.1E-06 42.0 5.9 52 341-396 43-94 (115)
160 PRK11092 bifunctional (p)ppGpp 93.4 0.53 1.2E-05 51.4 10.4 64 247-316 626-689 (702)
161 PRK11092 bifunctional (p)ppGpp 93.3 0.43 9.3E-06 52.1 9.6 64 110-179 626-689 (702)
162 COG1707 ACT domain-containing 93.2 0.27 5.8E-06 43.3 6.3 49 111-160 3-52 (218)
163 cd04930 ACT_TH ACT domain of t 93.1 0.58 1.2E-05 39.1 8.0 52 247-300 41-93 (115)
164 cd04871 ACT_PSP_2 ACT domains 92.7 0.087 1.9E-06 41.4 2.5 65 112-183 1-74 (84)
165 cd04885 ACT_ThrD-I Tandem C-te 92.6 0.98 2.1E-05 33.6 8.1 60 114-180 2-61 (68)
166 PRK06635 aspartate kinase; Rev 92.6 1.7 3.7E-05 44.2 12.5 106 247-370 262-374 (404)
167 PF13840 ACT_7: ACT domain ; P 92.4 0.76 1.7E-05 34.1 7.1 45 245-296 4-52 (65)
168 TIGR00691 spoT_relA (p)ppGpp s 92.3 0.94 2E-05 49.5 10.5 64 247-316 610-673 (683)
169 TIGR00691 spoT_relA (p)ppGpp s 92.1 0.79 1.7E-05 50.0 9.6 64 110-179 610-673 (683)
170 TIGR00656 asp_kin_monofn aspar 91.9 2.8 6.1E-05 42.6 13.0 104 246-369 259-370 (401)
171 COG0077 PheA Prephenate dehydr 91.8 0.85 1.8E-05 44.0 8.4 54 246-301 193-247 (279)
172 PRK10622 pheA bifunctional cho 91.5 0.64 1.4E-05 47.2 7.7 55 340-398 298-352 (386)
173 TIGR00719 sda_beta L-serine de 91.1 0.85 1.8E-05 42.2 7.5 52 245-296 146-197 (208)
174 cd04885 ACT_ThrD-I Tandem C-te 91.0 1.4 3.1E-05 32.7 7.3 59 251-317 2-61 (68)
175 PRK06291 aspartate kinase; Pro 91.0 4.6 0.0001 42.1 13.7 109 246-374 320-436 (465)
176 TIGR00719 sda_beta L-serine de 91.0 1.2 2.6E-05 41.2 8.4 52 108-160 146-198 (208)
177 COG0077 PheA Prephenate dehydr 90.7 0.96 2.1E-05 43.6 7.6 56 339-398 194-249 (279)
178 COG0317 SpoT Guanosine polypho 90.7 1.5 3.2E-05 47.6 9.8 72 237-315 616-689 (701)
179 PRK06382 threonine dehydratase 90.7 1.8 4E-05 44.2 10.2 68 107-180 327-398 (406)
180 COG0527 LysC Aspartokinases [A 90.3 15 0.00032 38.1 16.5 107 245-371 305-418 (447)
181 PRK11790 D-3-phosphoglycerate 90.0 0.53 1.1E-05 48.2 5.6 60 340-408 339-398 (409)
182 PRK08210 aspartate kinase I; R 89.6 7.7 0.00017 39.5 13.8 99 246-369 270-372 (403)
183 PRK11790 D-3-phosphoglycerate 89.5 1.5 3.2E-05 44.9 8.4 50 109-160 337-386 (409)
184 cd04906 ACT_ThrD-I_1 First of 89.2 4 8.6E-05 31.8 8.9 61 112-180 3-64 (85)
185 cd04871 ACT_PSP_2 ACT domains 89.2 0.25 5.5E-06 38.8 2.0 29 249-277 1-30 (84)
186 PF13840 ACT_7: ACT domain ; P 88.9 1 2.2E-05 33.4 5.0 31 341-371 8-42 (65)
187 PLN02551 aspartokinase 88.8 5 0.00011 42.5 11.8 111 245-374 364-482 (521)
188 TIGR00656 asp_kin_monofn aspar 88.6 30 0.00065 35.1 18.9 106 109-277 259-370 (401)
189 COG2150 Predicted regulator of 88.2 1.6 3.4E-05 38.3 6.3 93 35-144 16-128 (167)
190 KOG2663 Acetolactate synthase, 88.1 1.5 3.3E-05 41.2 6.5 66 109-182 76-143 (309)
191 PRK10622 pheA bifunctional cho 87.6 3 6.6E-05 42.3 9.0 52 247-300 297-349 (386)
192 COG0317 SpoT Guanosine polypho 87.4 2.7 5.9E-05 45.6 8.9 63 110-179 627-690 (701)
193 PRK06382 threonine dehydratase 87.0 3.7 7.9E-05 42.0 9.4 69 244-317 327-398 (406)
194 PRK09436 thrA bifunctional asp 86.8 8.6 0.00019 43.1 12.8 110 245-371 313-431 (819)
195 PRK08818 prephenate dehydrogen 86.4 3.6 7.9E-05 41.5 8.8 46 340-390 296-342 (370)
196 COG0440 IlvH Acetolactate synt 85.7 4.1 8.8E-05 36.0 7.6 68 110-183 4-71 (163)
197 TIGR01127 ilvA_1Cterm threonin 85.2 6.4 0.00014 39.7 10.0 66 109-180 304-373 (380)
198 PRK12483 threonine dehydratase 85.1 50 0.0011 35.0 16.8 118 19-140 344-470 (521)
199 COG0440 IlvH Acetolactate synt 85.0 3.3 7.2E-05 36.6 6.7 68 249-322 6-73 (163)
200 PRK08198 threonine dehydratase 84.6 9.1 0.0002 39.0 10.9 66 109-180 326-395 (404)
201 cd04906 ACT_ThrD-I_1 First of 84.6 8.1 0.00018 30.1 8.3 61 249-317 3-64 (85)
202 PRK11898 prephenate dehydratas 83.8 5.8 0.00013 38.5 8.6 67 247-317 196-264 (283)
203 TIGR01127 ilvA_1Cterm threonin 83.6 8.1 0.00018 39.0 10.0 33 246-278 304-336 (380)
204 PRK08210 aspartate kinase I; R 83.5 55 0.0012 33.3 16.3 99 19-141 270-372 (403)
205 PRK09084 aspartate kinase III; 83.4 23 0.00051 36.7 13.4 104 245-365 304-413 (448)
206 PRK09181 aspartate kinase; Val 83.4 21 0.00046 37.3 13.1 105 246-372 328-437 (475)
207 TIGR00657 asp_kinases aspartat 83.2 29 0.00063 35.8 14.0 105 246-371 301-413 (441)
208 PRK09034 aspartate kinase; Rev 83.1 17 0.00036 37.8 12.2 138 246-412 307-450 (454)
209 PRK06291 aspartate kinase; Pro 83.1 63 0.0014 33.7 18.1 106 109-277 320-431 (465)
210 PLN02317 arogenate dehydratase 82.9 6.5 0.00014 39.8 8.7 66 247-316 283-363 (382)
211 PRK06545 prephenate dehydrogen 82.8 4.3 9.4E-05 40.7 7.5 37 245-281 288-324 (359)
212 COG4492 PheB ACT domain-contai 82.3 9.7 0.00021 32.4 8.1 52 108-160 70-121 (150)
213 TIGR01270 Trp_5_monoox tryptop 82.0 5.4 0.00012 41.2 7.8 68 244-317 28-97 (464)
214 cd04891 ACT_AK-LysC-DapG-like_ 81.9 6.8 0.00015 27.3 6.4 47 113-159 3-49 (61)
215 PRK13581 D-3-phosphoglycerate 81.7 3.2 7E-05 44.0 6.4 61 341-408 454-514 (526)
216 PLN02551 aspartokinase 81.6 77 0.0017 33.6 18.4 108 109-277 365-477 (521)
217 PRK13581 D-3-phosphoglycerate 80.3 4.4 9.5E-05 43.0 6.9 50 246-295 451-500 (526)
218 PLN02317 arogenate dehydratase 80.3 6.6 0.00014 39.7 7.7 54 340-396 284-350 (382)
219 PRK09181 aspartate kinase; Val 80.2 81 0.0018 33.0 17.1 103 109-277 328-434 (475)
220 PRK08818 prephenate dehydrogen 79.8 7.7 0.00017 39.2 8.1 61 19-80 294-355 (370)
221 PRK08198 threonine dehydratase 79.8 16 0.00035 37.2 10.6 37 244-280 324-360 (404)
222 PRK11898 prephenate dehydratas 79.6 6.7 0.00015 38.1 7.4 51 342-396 199-250 (283)
223 TIGR01327 PGDH D-3-phosphoglyc 79.4 3.5 7.6E-05 43.7 5.8 61 341-408 453-513 (525)
224 cd04913 ACT_AKii-LysC-BS-like_ 79.4 20 0.00044 26.0 8.6 33 112-144 3-35 (75)
225 KOG2663 Acetolactate synthase, 79.1 3.1 6.7E-05 39.2 4.6 33 248-280 78-110 (309)
226 TIGR01268 Phe4hydrox_tetr phen 79.0 6 0.00013 40.6 7.0 52 341-396 18-69 (436)
227 TIGR01327 PGDH D-3-phosphoglyc 78.3 4.1 8.8E-05 43.2 5.8 51 246-296 450-500 (525)
228 TIGR01268 Phe4hydrox_tetr phen 78.2 11 0.00024 38.8 8.6 68 247-319 16-84 (436)
229 cd04932 ACT_AKiii-LysC-EC_1 AC 77.7 21 0.00045 27.1 8.2 26 254-281 11-36 (75)
230 PRK06349 homoserine dehydrogen 77.5 11 0.00024 38.8 8.6 50 109-160 347-396 (426)
231 PRK06545 prephenate dehydrogen 76.4 9.7 0.00021 38.2 7.7 41 108-149 288-328 (359)
232 TIGR01270 Trp_5_monoox tryptop 72.6 7.7 0.00017 40.1 5.8 53 341-396 33-85 (464)
233 cd04912 ACT_AKiii-LysC-EC-like 72.4 33 0.00072 25.8 8.1 29 249-277 3-34 (75)
234 PRK09436 thrA bifunctional asp 71.4 1.8E+02 0.0039 32.7 18.4 111 108-277 313-429 (819)
235 PRK06349 homoserine dehydrogen 71.0 19 0.00042 37.0 8.5 48 247-296 348-395 (426)
236 cd04932 ACT_AKiii-LysC-EC_1 AC 69.7 32 0.0007 26.1 7.5 31 111-141 2-34 (75)
237 PRK09224 threonine dehydratase 69.0 74 0.0016 33.6 12.5 120 20-144 328-455 (504)
238 cd04935 ACT_AKiii-DAPDC_1 ACT 68.3 33 0.00071 26.0 7.3 56 255-317 12-67 (75)
239 PLN02550 threonine dehydratase 68.3 1.8E+02 0.0039 31.4 16.0 116 21-141 418-539 (591)
240 COG2150 Predicted regulator of 68.2 10 0.00022 33.4 4.8 44 247-293 93-138 (167)
241 COG3978 Acetolactate synthase 68.2 47 0.001 25.8 7.7 66 110-183 3-69 (86)
242 PRK09466 metL bifunctional asp 67.1 1E+02 0.0023 34.6 13.7 104 245-369 315-424 (810)
243 PRK09034 aspartate kinase; Rev 66.0 1.7E+02 0.0037 30.4 16.6 32 246-277 384-418 (454)
244 PF05088 Bac_GDH: Bacterial NA 65.6 3.1E+02 0.0067 33.2 20.5 170 15-185 336-568 (1528)
245 PRK08526 threonine dehydratase 63.3 54 0.0012 33.5 9.9 69 244-317 323-394 (403)
246 TIGR00657 asp_kinases aspartat 63.0 1.9E+02 0.0041 29.8 18.7 38 109-146 301-339 (441)
247 PRK08961 bifunctional aspartat 62.3 1E+02 0.0022 35.0 12.6 103 246-367 321-429 (861)
248 cd04935 ACT_AKiii-DAPDC_1 ACT 62.2 43 0.00093 25.4 6.9 56 119-180 12-67 (75)
249 PRK08526 threonine dehydratase 61.9 57 0.0012 33.3 9.8 68 107-180 323-394 (403)
250 cd04912 ACT_AKiii-LysC-EC-like 61.7 66 0.0014 24.1 7.9 63 341-413 3-68 (75)
251 COG3978 Acetolactate synthase 61.2 76 0.0016 24.6 7.8 66 248-320 4-69 (86)
252 cd04922 ACT_AKi-HSDH-ThrA_2 AC 61.1 57 0.0012 23.2 8.9 29 249-277 3-34 (66)
253 cd04868 ACT_AK-like ACT domain 58.6 20 0.00043 24.4 4.2 30 342-371 3-35 (60)
254 cd04914 ACT_AKi-DapG-BS_1 ACT 57.4 17 0.00038 26.8 3.8 32 111-142 2-33 (67)
255 cd04937 ACT_AKi-DapG-BS_2 ACT 57.4 70 0.0015 23.0 8.8 28 112-140 3-33 (64)
256 cd04937 ACT_AKi-DapG-BS_2 ACT 56.3 73 0.0016 22.9 8.3 28 249-276 3-33 (64)
257 cd04891 ACT_AK-LysC-DapG-like_ 54.9 16 0.00034 25.3 3.2 28 346-373 8-35 (61)
258 PRK10820 DNA-binding transcrip 54.7 15 0.00033 38.8 4.3 34 341-374 2-35 (520)
259 PRK08841 aspartate kinase; Val 54.6 1E+02 0.0022 31.5 10.1 91 246-368 257-347 (392)
260 cd04868 ACT_AK-like ACT domain 54.2 22 0.00048 24.2 3.9 28 250-277 3-33 (60)
261 cd04890 ACT_AK-like_1 ACT doma 54.0 76 0.0016 22.4 7.3 50 348-410 12-61 (62)
262 cd04890 ACT_AK-like_1 ACT doma 54.0 64 0.0014 22.8 6.4 23 255-277 11-33 (62)
263 COG4492 PheB ACT domain-contai 54.0 60 0.0013 27.8 6.8 34 341-374 74-107 (150)
264 cd04913 ACT_AKii-LysC-BS-like_ 53.4 17 0.00037 26.4 3.3 26 347-372 10-35 (75)
265 cd04922 ACT_AKi-HSDH-ThrA_2 AC 51.3 85 0.0018 22.2 8.7 33 112-144 3-37 (66)
266 COG0527 LysC Aspartokinases [A 51.0 3.1E+02 0.0067 28.5 18.1 107 108-277 305-416 (447)
267 cd04919 ACT_AK-Hom3_2 ACT doma 50.6 89 0.0019 22.2 8.7 34 112-146 3-39 (66)
268 TIGR02079 THD1 threonine dehyd 50.3 1.4E+02 0.0029 30.6 10.3 68 244-317 322-390 (409)
269 cd04892 ACT_AK-like_2 ACT doma 50.0 33 0.00071 23.9 4.3 30 341-370 2-34 (65)
270 PRK14636 hypothetical protein; 48.9 2E+02 0.0044 25.8 10.4 64 257-322 4-67 (176)
271 TIGR02079 THD1 threonine dehyd 48.0 1.7E+02 0.0036 30.0 10.5 37 108-145 323-359 (409)
272 PRK09084 aspartate kinase III; 48.0 3.4E+02 0.0073 28.1 14.9 34 108-142 304-340 (448)
273 PF05088 Bac_GDH: Bacterial NA 47.8 1.9E+02 0.0042 34.8 12.0 89 234-322 474-568 (1528)
274 PRK14634 hypothetical protein; 47.7 1.9E+02 0.0042 25.3 10.6 63 258-322 7-69 (155)
275 PRK12483 threonine dehydratase 47.2 3.8E+02 0.0082 28.5 14.1 118 244-373 342-475 (521)
276 PRK14646 hypothetical protein; 45.8 2.1E+02 0.0045 25.1 10.8 62 259-322 8-69 (155)
277 cd04911 ACT_AKiii-YclM-BS_1 AC 45.3 70 0.0015 24.6 5.5 55 257-320 14-68 (76)
278 COG3283 TyrR Transcriptional r 43.0 61 0.0013 32.8 6.0 59 341-412 2-60 (511)
279 cd04919 ACT_AK-Hom3_2 ACT doma 42.9 1.2E+02 0.0026 21.5 8.9 29 249-277 3-34 (66)
280 PRK08639 threonine dehydratase 41.8 2E+02 0.0044 29.4 10.1 38 107-145 333-370 (420)
281 cd04934 ACT_AK-Hom3_1 CT domai 41.6 1.2E+02 0.0026 22.8 6.3 53 256-317 13-65 (73)
282 cd04918 ACT_AK1-AT_2 ACT domai 41.5 1.3E+02 0.0029 21.7 7.8 29 249-277 3-33 (65)
283 PRK14645 hypothetical protein; 41.3 2.5E+02 0.0053 24.7 10.6 63 258-322 9-71 (154)
284 PRK10820 DNA-binding transcrip 41.1 44 0.00095 35.4 5.2 34 112-146 2-35 (520)
285 PRK08639 threonine dehydratase 40.7 2.1E+02 0.0046 29.3 10.0 68 244-317 333-401 (420)
286 cd08357 Glo_EDI_BRP_like_18 Th 40.5 39 0.00084 27.1 3.8 44 352-397 77-120 (125)
287 cd07247 SgaA_N_like N-terminal 39.9 64 0.0014 25.5 5.0 47 341-397 64-110 (114)
288 TIGR01124 ilvA_2Cterm threonin 38.8 3.6E+02 0.0078 28.4 11.5 121 19-144 324-451 (499)
289 cd07253 Glo_EDI_BRP_like_2 Thi 37.6 63 0.0014 25.6 4.6 51 342-398 71-121 (125)
290 cd04923 ACT_AK-LysC-DapG-like_ 35.9 73 0.0016 22.2 4.2 29 342-370 3-34 (63)
291 cd04934 ACT_AK-Hom3_1 CT domai 35.6 1.6E+02 0.0034 22.1 6.2 53 120-180 13-65 (73)
292 PF00903 Glyoxalase: Glyoxalas 35.0 75 0.0016 25.2 4.7 40 353-397 87-126 (128)
293 cd04933 ACT_AK1-AT_1 ACT domai 34.7 38 0.00081 26.1 2.6 24 119-142 12-35 (78)
294 PRK00907 hypothetical protein; 34.7 1.9E+02 0.0041 23.1 6.7 64 248-316 18-83 (92)
295 cd07245 Glo_EDI_BRP_like_9 Thi 34.3 73 0.0016 24.5 4.4 45 342-397 68-112 (114)
296 cd04936 ACT_AKii-LysC-BS-like_ 34.3 81 0.0017 21.9 4.2 30 342-371 3-35 (63)
297 cd04924 ACT_AK-Arch_2 ACT doma 33.7 1.7E+02 0.0036 20.5 8.8 33 112-144 3-37 (66)
298 PRK05925 aspartate kinase; Pro 33.2 5.7E+02 0.012 26.5 12.4 132 246-411 299-433 (440)
299 PF12681 Glyoxalase_2: Glyoxal 33.2 95 0.0021 24.0 4.9 39 353-397 67-105 (108)
300 PRK00907 hypothetical protein; 33.1 2.1E+02 0.0044 22.9 6.6 64 110-179 17-83 (92)
301 PRK06423 phosphoribosylformylg 32.7 1.4E+02 0.0031 22.4 5.5 48 349-413 10-62 (73)
302 TIGR01124 ilvA_2Cterm threonin 32.1 3.2E+02 0.007 28.8 9.9 65 108-180 323-387 (499)
303 PRK12331 oxaloacetate decarbox 31.8 6.1E+02 0.013 26.4 12.1 38 341-380 199-236 (448)
304 PLN02550 threonine dehydratase 31.8 2.6E+02 0.0057 30.2 9.2 125 110-279 417-543 (591)
305 cd07941 DRE_TIM_LeuA3 Desulfob 30.3 4.9E+02 0.011 24.8 10.2 87 256-380 148-234 (273)
306 PTZ00324 glutamate dehydrogena 30.0 3.1E+02 0.0067 31.5 9.6 65 19-83 229-299 (1002)
307 cd04892 ACT_AK-like_2 ACT doma 29.5 1.9E+02 0.004 19.7 8.9 29 249-277 2-33 (65)
308 cd04933 ACT_AK1-AT_1 ACT domai 29.1 65 0.0014 24.7 3.1 56 347-411 12-69 (78)
309 COG0779 Uncharacterized protei 28.8 3.8E+02 0.0082 23.5 8.1 78 258-350 8-87 (153)
310 PRK14633 hypothetical protein; 28.8 3.9E+02 0.0085 23.2 10.0 57 260-321 6-62 (150)
311 cd07937 DRE_TIM_PC_TC_5S Pyruv 28.7 4.9E+02 0.011 24.9 9.8 38 341-380 194-231 (275)
312 COG3603 Uncharacterized conser 28.6 1.9E+02 0.0042 24.3 5.8 34 244-277 60-96 (128)
313 PLN02746 hydroxymethylglutaryl 27.9 4.6E+02 0.01 26.2 9.7 85 258-380 196-280 (347)
314 cd04916 ACT_AKiii-YclM-BS_2 AC 27.8 2.2E+02 0.0047 20.0 8.8 32 112-144 3-37 (66)
315 PF04083 Abhydro_lipase: Parti 27.7 1.8E+02 0.004 21.3 5.2 33 129-162 2-34 (63)
316 PTZ00324 glutamate dehydrogena 27.2 2.4E+02 0.0051 32.4 8.1 46 119-164 241-286 (1002)
317 PRK14632 hypothetical protein; 27.0 4.5E+02 0.0099 23.4 9.9 58 260-322 10-67 (172)
318 cd07238 Glo_EDI_BRP_like_5 Thi 26.8 77 0.0017 25.0 3.4 40 353-398 68-107 (112)
319 cd07254 Glo_EDI_BRP_like_20 Th 26.7 66 0.0014 25.8 3.0 42 353-398 72-113 (120)
320 PRK00092 ribosome maturation p 26.7 4.2E+02 0.0092 23.0 10.1 59 260-322 9-67 (154)
321 PRK14040 oxaloacetate decarbox 26.7 8.1E+02 0.018 26.5 11.9 85 257-380 153-237 (593)
322 cd04924 ACT_AK-Arch_2 ACT doma 26.2 2.3E+02 0.005 19.8 9.0 29 249-277 3-34 (66)
323 COG3603 Uncharacterized conser 26.1 50 0.0011 27.6 2.0 27 346-374 73-99 (128)
324 cd08344 MhqB_like_N N-terminal 26.0 78 0.0017 25.2 3.3 39 352-398 67-105 (112)
325 cd07940 DRE_TIM_IPMS 2-isoprop 26.0 5.7E+02 0.012 24.2 10.3 88 257-380 141-228 (268)
326 PRK14640 hypothetical protein; 26.0 4.4E+02 0.0096 22.9 10.6 60 259-322 7-66 (152)
327 cd04915 ACT_AK-Ectoine_2 ACT d 26.0 2.6E+02 0.0057 20.3 7.7 29 249-277 4-34 (66)
328 cd04918 ACT_AK1-AT_2 ACT domai 25.4 2.6E+02 0.0057 20.1 8.5 34 112-146 3-38 (65)
329 PRK05692 hydroxymethylglutaryl 25.4 6.1E+02 0.013 24.5 9.9 86 257-380 153-238 (287)
330 PRK12330 oxaloacetate decarbox 25.3 6.1E+02 0.013 26.8 10.3 91 253-380 149-239 (499)
331 PF02576 DUF150: Uncharacteris 25.2 4.2E+02 0.009 22.5 7.8 54 264-321 2-55 (141)
332 cd08346 PcpA_N_like N-terminal 25.1 1E+02 0.0022 24.4 3.9 37 353-397 87-123 (126)
333 COG3283 TyrR Transcriptional r 24.8 1.6E+02 0.0034 30.0 5.5 34 112-146 2-35 (511)
334 KOG0456 Aspartate kinase [Amin 24.7 1.1E+02 0.0025 31.0 4.6 120 247-392 393-520 (559)
335 PRK00341 hypothetical protein; 24.5 3.6E+02 0.0078 21.3 6.7 64 248-317 18-83 (91)
336 cd07233 Glyoxalase_I Glyoxalas 24.0 1.7E+02 0.0038 23.0 5.1 45 342-397 74-118 (121)
337 cd04914 ACT_AKi-DapG-BS_1 ACT 23.9 1.3E+02 0.0028 22.1 3.8 28 250-277 4-32 (67)
338 cd07261 Glo_EDI_BRP_like_11 Th 23.8 1E+02 0.0023 24.2 3.6 48 342-397 63-110 (114)
339 PF04083 Abhydro_lipase: Parti 23.5 2.3E+02 0.005 20.7 5.0 33 38-70 2-34 (63)
340 cd07945 DRE_TIM_CMS Leptospira 23.4 6.7E+02 0.015 24.1 11.2 88 255-380 143-230 (280)
341 PRK14637 hypothetical protein; 23.1 5.1E+02 0.011 22.6 10.6 76 259-350 9-86 (151)
342 cd07263 Glo_EDI_BRP_like_16 Th 23.0 1.2E+02 0.0026 23.6 3.8 38 353-397 78-115 (119)
343 PRK14647 hypothetical protein; 23.0 5.2E+02 0.011 22.6 10.1 59 260-322 10-68 (159)
344 PF09383 NIL: NIL domain; Int 21.7 3.4E+02 0.0074 20.1 8.4 64 111-180 5-68 (76)
345 cd08354 Glo_EDI_BRP_like_13 Th 21.5 1.2E+02 0.0026 24.0 3.6 38 353-397 80-117 (122)
346 PRK14639 hypothetical protein; 21.4 5.3E+02 0.011 22.1 9.8 55 264-322 3-57 (140)
347 PRK14630 hypothetical protein; 21.3 5.4E+02 0.012 22.2 10.6 63 256-322 6-68 (143)
348 cd07266 HPCD_N_class_II N-term 20.9 99 0.0021 24.7 3.0 42 352-398 73-114 (121)
349 TIGR00973 leuA_bact 2-isopropy 20.9 9.4E+02 0.02 25.3 10.9 89 257-380 144-232 (494)
350 PLN02321 2-isopropylmalate syn 20.9 7.2E+02 0.016 27.1 10.1 89 257-380 238-326 (632)
351 cd09011 Glo_EDI_BRP_like_23 Th 20.8 1.4E+02 0.003 23.9 3.8 48 341-398 67-115 (120)
352 PRK14646 hypothetical protein; 20.8 5.7E+02 0.012 22.3 9.2 61 123-184 8-68 (155)
353 PRK02047 hypothetical protein; 20.6 4.3E+02 0.0093 20.8 7.1 63 248-315 17-81 (91)
354 cd08350 BLMT_like BLMT, a bleo 20.3 94 0.002 25.0 2.7 44 353-398 69-115 (120)
355 cd07265 2_3_CTD_N N-terminal d 20.3 1.5E+02 0.0032 23.7 3.9 41 353-398 75-115 (122)
356 cd07944 DRE_TIM_HOA_like 4-hyd 20.1 7.6E+02 0.016 23.5 10.3 38 341-380 185-222 (266)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=2.1e-28 Score=267.82 Aligned_cols=174 Identities=17% Similarity=0.237 Sum_probs=152.4
Q ss_pred CCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHH
Q 015010 232 SAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDA 310 (414)
Q Consensus 232 ~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~ 310 (414)
..+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++. ++++++
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~d~~g~~~~-~~~~~~ 739 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVTELNGKLLE-FDRRRQ 739 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence 4567888999999999999999999999999999999999999999999964 666999999995 8888884 678899
Q ss_pred HHHHHHHHHcCCcceee---ecC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010 311 LCSRLRMELLRPLRVAV---VNR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375 (414)
Q Consensus 311 l~~~L~~~l~~~~~~~~---~~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~ 375 (414)
|++.|+++|.++..... .++ ..+|+|.|+ |+|||.|.|||||||+|+++|.++|++|++|||+|
T Consensus 740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T- 818 (854)
T PRK01759 740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITT- 818 (854)
T ss_pred HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcc-
Confidence 99999999987653221 111 236888875 59999999999999999999999999999999999
Q ss_pred eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
.|++ ++|+|||+|.+|.|+++++ .++|+++|+.
T Consensus 819 -~ger--v~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~ 851 (854)
T PRK01759 819 -IGEK--AEDFFILTNQQGQALDEEE-RKALKSRLLS 851 (854)
T ss_pred -cCce--EEEEEEEECCCCCcCChHH-HHHHHHHHHH
Confidence 9999 9999999999999999764 4999988864
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.8e-28 Score=266.60 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=150.7
Q ss_pred CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010 233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL 311 (414)
Q Consensus 233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l 311 (414)
.+|.|.+++.++.++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++. ++++++|
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~-~dg~alD~F~V~d~~g~~~~-~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTS-RDGMAMDTFIVLEPDGSPLS-QDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEc-CCCeEEEEEEEECCCCCCCC-HHHHHHH
Confidence 567888999999999999999999999999999999999999999999975 445999999995 8888874 6788999
Q ss_pred HHHHHHHHcCCccee-ee---cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010 312 CSRLRMELLRPLRVA-VV---NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375 (414)
Q Consensus 312 ~~~L~~~l~~~~~~~-~~---~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~ 375 (414)
++.|+++|.++.... .. ++ ..+|+|.|+ |+|||.|.|||||||+|+++|.++|++|++|||+|
T Consensus 765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T- 843 (884)
T PRK05007 765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITT- 843 (884)
T ss_pred HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEec-
Confidence 999999998763221 11 11 136788876 58999999999999999999999999999999999
Q ss_pred eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
.|++ |+|+|||++.+|.|++++ .++.|+++|+.
T Consensus 844 -~ger--a~DvFyV~~~~g~~l~~~-~~~~l~~~L~~ 876 (884)
T PRK05007 844 -IGER--VEDLFILATADRRALNEE-LQQELRQRLTE 876 (884)
T ss_pred -cCce--EEEEEEEEcCCCCcCCHH-HHHHHHHHHHH
Confidence 9999 999999999999999965 57888888864
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=5.6e-27 Score=256.58 Aligned_cols=180 Identities=21% Similarity=0.282 Sum_probs=154.6
Q ss_pred CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
.+.++++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+.+.+++++++|++.|+++|.+.
T Consensus 673 ~~~~~t~V~V~~-~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~ 751 (854)
T PRK01759 673 FSRGGTEIFIYC-QDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQALTKALNTN 751 (854)
T ss_pred CCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 344799999999 9999999999999999999999999999999999999999998887667789999999999999762
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM 265 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~ 265 (414)
. .. ..+.. .. +...++..+|.|.|+|+.+..+|+|+|.++|||||||+|+
T Consensus 752 ~----------~~----------~~~~~-~~---------~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~ 801 (854)
T PRK01759 752 K----------LK----------KLNLE-EN---------HKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVS 801 (854)
T ss_pred C----------Cc----------chhcc-cc---------ccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence 1 00 00010 00 1123467889999999999999999999999999999999
Q ss_pred HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010 266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
++|.++|++|+.|+|. |.|+++.|+|||+ .+|.++.++++ +.|+++|.++|
T Consensus 802 ~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 802 QVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred HHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHHHHHHHHh
Confidence 9999999999999998 8999999999995 88999987555 99999998876
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=9.1e-27 Score=255.75 Aligned_cols=183 Identities=20% Similarity=0.264 Sum_probs=156.9
Q ss_pred CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
...++++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+...+++++++|++.|+++|.+.
T Consensus 697 ~~~~~t~V~V~a-~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~ 775 (884)
T PRK05007 697 ATRGGTEIFIWS-PDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQS 775 (884)
T ss_pred CCCCeEEEEEEe-cCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 344799999999 9999999999999999999999999999999999999999998877667789999999999999763
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM 265 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~ 265 (414)
. .. .+ ..++.. ....++..+|.|.|+|+.++.+|+|+|.|+|||||||+|+
T Consensus 776 ~----------~~---------~~--~~~~~~--------~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~ 826 (884)
T PRK05007 776 S----------PQ---------PP--KPRRLP--------AKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVG 826 (884)
T ss_pred C----------CC---------cc--cccccc--------cccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHH
Confidence 1 00 00 000100 1123467889999999999999999999999999999999
Q ss_pred HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
++|.++|++|.+|+|. |.|+++.|+|||+ .+|.+++ +++++.|++.|.++|..
T Consensus 827 ~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 827 KIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred HHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999998 7999999999996 8889887 67889999999999864
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=3.3e-26 Score=251.40 Aligned_cols=184 Identities=16% Similarity=0.254 Sum_probs=156.7
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC--CHHHHHHHHHHHHHHHccc
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH--TRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~--~~~~~~~i~~~L~~~l~~~ 185 (414)
.+.++|.|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|.++.+.++ +++++++|++.|.++|.+.
T Consensus 702 ~~~t~V~V~~-~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYA-PDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 4789999999 999999999999999999999999999999999999999999887753 4689999999999999763
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM 265 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~ 265 (414)
. .. +..+..+.. ....++..+|.|.++++.+.++|+|+|+++||||||++|+
T Consensus 781 ~----------~~----------~~~~~~~~~--------~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~ 832 (895)
T PRK00275 781 D----------DY----------PTIIQRRVP--------RQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIG 832 (895)
T ss_pred C----------cc----------chhhhhhhh--------hhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHH
Confidence 1 10 000111100 0113456789999999999999999999999999999999
Q ss_pred HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
++|+.+|+||++|+|+| .|+++.|+|||. .+|.++.+++++++|++.|.++|..+
T Consensus 833 ~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 833 RIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999994 488999999996 88999988889999999999999755
No 6
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=3.4e-25 Score=242.46 Aligned_cols=181 Identities=18% Similarity=0.239 Sum_probs=151.3
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccc
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTL 186 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~ 186 (414)
..+.++|+|++ +||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+...+++++++|++.|+++|.+..
T Consensus 675 ~~~~~~v~i~~-~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 675 AGEGLQVMVYT-PDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA 753 (856)
T ss_pred CCCeEEEEEEe-cCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC
Confidence 34789999999 99999999999999999999999999999999999999999987765567899999999999997631
Q ss_pred ccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHH
Q 015010 187 ISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMR 266 (414)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~ 266 (414)
.. +..+.++.. .+..++..++.|.+++..+.++|+|+|+++||||||++|++
T Consensus 754 ----------~~----------~~~~~~~~~--------~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~ 805 (856)
T PRK03059 754 ----------PL----------PEPSKGRLS--------RQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIAR 805 (856)
T ss_pred ----------Cc----------chhhccccc--------ccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHH
Confidence 00 000111100 11234678899999999999999999999999999999999
Q ss_pred HHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 267 TLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 267 ~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
+|+.+|+||++|+|+| .|+++.|+|+|+ +.++.+++++++|++.|.++|+
T Consensus 806 ~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 806 VLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999995 477999999994 3335577889999999988874
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=4.8e-25 Score=240.82 Aligned_cols=179 Identities=18% Similarity=0.226 Sum_probs=150.4
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI 187 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 187 (414)
.+.++|+|++ +||||||++||++|+.+|+||++|+|+|+.+|+++|+|+|.++.+.. .+++.+|++.|+++|.+..
T Consensus 688 ~~~~~v~v~~-~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~- 763 (869)
T PRK04374 688 NDALEVFVYS-PDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL- 763 (869)
T ss_pred CCeEEEEEEe-CCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-
Confidence 3689999999 99999999999999999999999999999999999999999987753 4678889999999998631
Q ss_pred cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010 188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT 267 (414)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~ 267 (414)
.. +. +.++.. .+...++..+|+|.+++..+.++|+|+|++.||||||++|+++
T Consensus 764 ---------~~----------~~-~~~~~~-------~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~ 816 (869)
T PRK04374 764 ---------QK----------VR-PARRAV-------PRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHV 816 (869)
T ss_pred ---------Cc----------cc-cccccC-------cccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHH
Confidence 10 00 011100 0112356788999999999999999999999999999999999
Q ss_pred HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 015010 268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
|+++|+||++|+|+ |.|+++.|+|||+ .+|.++.++++ +.|++.|.++|.
T Consensus 817 l~~~~l~I~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 817 LRMQHLRVHDARIA--TFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHCCCeEEEeEEE--ecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999999 4588999999995 88888776555 999999998884
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=5.3e-25 Score=242.28 Aligned_cols=173 Identities=16% Similarity=0.151 Sum_probs=151.1
Q ss_pred CeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010 234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC 312 (414)
Q Consensus 234 ~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~ 312 (414)
.+.|.+.+....++|+|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++++.|+|+|. .+|.++.+++++++|+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 46788888777999999999999999999999999999999999999974 677999999996 8888888878899999
Q ss_pred HHHHHHHcCCccee--e-----ecC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEe
Q 015010 313 SRLRMELLRPLRVA--V-----VNR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIG 373 (414)
Q Consensus 313 ~~L~~~l~~~~~~~--~-----~~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~ 373 (414)
+.|.++|.+..... . .++ ..+|+|.|+ |.|+|.|.|||||||+|+++|.++|++|++|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 99999998754211 0 011 136788775 5999999999999999999999999999999999
Q ss_pred cceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 374 RYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 374 T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
| .|++ ++|+|||++..|.|++++ .++.|+++|+.
T Consensus 814 t--~~~~--~~d~F~v~~~~g~~~~~~-~~~~l~~~L~~ 847 (850)
T TIGR01693 814 T--FGEK--AEDVFYVTDLFGLKLTDE-EEQRLLEVLAA 847 (850)
T ss_pred e--cCcc--ceeEEEEECCCCCCCCHH-HHHHHHHHHHH
Confidence 9 9999 999999999999999985 68999998864
No 9
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=9.9e-25 Score=239.75 Aligned_cols=173 Identities=14% Similarity=0.245 Sum_probs=143.7
Q ss_pred CeEEEEecCCC---CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCC-ChHHH
Q 015010 234 PVSIAVDNSFS---PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIV-DPSKQ 308 (414)
Q Consensus 234 ~~~V~v~~~~~---~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~-~~~~~ 308 (414)
.+.|.+.+... .++|.|.|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|.++. +++++
T Consensus 688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt-~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITS-SSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEc-CCCeEEEEEEEeCCCCCCccchHHHH
Confidence 34555766664 589999999999999999999999999999999999976 555999999995 8888754 45789
Q ss_pred HHHHHHHHHHHcCCccee--eec---C-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEE
Q 015010 309 DALCSRLRMELLRPLRVA--VVN---R-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 309 ~~l~~~L~~~l~~~~~~~--~~~---~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
++|++.|.++|.++.... +.. + ..++.|.+. +.|+|+|.||||||++|+.+|.++|++|++|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 999999999998775321 111 1 124666554 58999999999999999999999999999999
Q ss_pred EecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 372 IGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 372 I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
|.| .|++ ++|+|||+|.+|.+++++..+++|+++|.
T Consensus 847 I~T--~g~~--v~D~F~V~d~~g~~l~~~~~~~~l~~~L~ 882 (895)
T PRK00275 847 IAT--LGER--VEDVFFITDADNQPLSDPQLCSRLQDAIC 882 (895)
T ss_pred EEe--cCCE--EEEEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 999 8999 99999999999999986445677777765
No 10
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.6e-24 Score=238.51 Aligned_cols=184 Identities=22% Similarity=0.304 Sum_probs=153.8
Q ss_pred CCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHcc
Q 015010 106 KPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH-TRKRREETIHHLEAVLGK 184 (414)
Q Consensus 106 ~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~~~~~i~~~L~~~l~~ 184 (414)
.+.+.++|+|++ +||||||++|+++|+.+|+||++|+|+|+.+|+++|+|+|++..+... +++++++|++.|.++|.+
T Consensus 664 ~~~~~t~i~V~~-~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 664 RPSGGTEVFIYA-PDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 345799999999 999999999999999999999999999889999999999999887754 566899999999999976
Q ss_pred ccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHH
Q 015010 185 TLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDM 264 (414)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i 264 (414)
.. .. +.. +.++.. . ..+..++..+|.|.|+|+.++.+|+|+|.|+||||||++|
T Consensus 743 ~~-----~~--~~~-------------~~~~~~---~---~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i 796 (850)
T TIGR01693 743 LA-----KD--PDT-------------ISARRA---R---RRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARV 796 (850)
T ss_pred CC-----cc--ccc-------------cccccC---C---cccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHH
Confidence 31 00 000 111100 0 0112346688999999999999999999999999999999
Q ss_pred HHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010 265 MRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 265 ~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
+++|+++|++|.+|+|. |.|+++.|+|+++ ..|.|+.+ ++++.|+++|.++|
T Consensus 797 ~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 797 GRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999998 6788999999996 78898876 78899999998876
No 11
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=3.1e-24 Score=237.79 Aligned_cols=187 Identities=25% Similarity=0.376 Sum_probs=157.6
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHccc
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELL-HTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~-~~~~~~~~i~~~L~~~l~~~ 185 (414)
..+.++|+|++ +||||||++|+++|+.+||||++|+|+|+.+|+++|+|+|+++.+.+ .+++++++|++.|+.++.+.
T Consensus 729 ~~~~t~v~I~~-~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~ 807 (931)
T PRK05092 729 ARGVTEVTVLA-ADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGE 807 (931)
T ss_pred CCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 34789999999 99999999999999999999999999999999999999999987764 46789999999999999753
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMM 265 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~ 265 (414)
. .. +..+.++.. .+....++..+|.|.|+|+.+.++|+|+|+++||||||++|+
T Consensus 808 ~----------~~----------~~~~~~r~~------~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~ 861 (931)
T PRK05092 808 V----------RL----------PEALAKRTK------PKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLT 861 (931)
T ss_pred C----------CC----------ccccccccC------ccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHH
Confidence 1 00 000111100 000123467789999999999999999999999999999999
Q ss_pred HHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 266 RTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 266 ~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
++|+++|+||.+|+|. |.|+++.|+|+|+ .+|.++.++++++.|++.|.++|.++
T Consensus 862 ~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 862 RALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred HHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999 5688999999996 88999988888999999999999765
No 12
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=5.5e-24 Score=232.57 Aligned_cols=169 Identities=14% Similarity=0.197 Sum_probs=140.8
Q ss_pred eEEEE-ecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010 235 VSIAV-DNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC 312 (414)
Q Consensus 235 ~~V~v-~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~ 312 (414)
+.|.+ ...+..+.+.|.|+++||||||++||++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|.+ ++++.+++
T Consensus 677 ~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~-~~g~~ld~f~V~~~~~~~---~~~~~~i~ 752 (869)
T PRK04374 677 TLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDA-PHDAIFDVFEVLPQDTYA---DGDPQRLA 752 (869)
T ss_pred CeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEc-CCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence 34444 33677799999999999999999999999999999999999976 455999999996 66654 35688899
Q ss_pred HHHHHHHcCCccee-ee----cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010 313 SRLRMELLRPLRVA-VV----NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375 (414)
Q Consensus 313 ~~L~~~l~~~~~~~-~~----~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~ 375 (414)
+.|+++|.++.... .. ++ ..+|+|.++ +.|+|.|.|||||||+|+.+|.++|++|++|+|+|
T Consensus 753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T- 831 (869)
T PRK04374 753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT- 831 (869)
T ss_pred HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe-
Confidence 99999998764311 11 11 135777765 59999999999999999999999999999999999
Q ss_pred eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
.|++ ++|+|||+|.+|.+++++++ +.|+++|+.
T Consensus 832 -~g~~--a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~ 864 (869)
T PRK04374 832 -FGER--AEDQFQITDEHDRPLSESAR-QALRDALCA 864 (869)
T ss_pred -cCCE--EEEEEEEECCCCCcCChHHH-HHHHHHHHH
Confidence 8999 99999999999999887644 888888864
No 13
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.6e-24 Score=221.24 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=143.2
Q ss_pred CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010 233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL 311 (414)
Q Consensus 233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l 311 (414)
..|.|.+.+.+..+.|+|.|+++|+|.||+.++.++...|.||++|+|+|+.+| +++|+|+|. ++|.++. +.+...+
T Consensus 670 ~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG-~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 670 GKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred cCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC-ceeeeEEEecCCCCccc-hhHHHHH
Confidence 446777777777899999999999999999999999999999999999987555 999999995 8999876 6788888
Q ss_pred HHHHHHHHcCCcce-e---eecCC-----CCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010 312 CSRLRMELLRPLRV-A---VVNRG-----PDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375 (414)
Q Consensus 312 ~~~L~~~l~~~~~~-~---~~~~~-----~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~ 375 (414)
+..|.+++...... . ..++. ++|+|.+. +.|||.+.||||||++|+++|.+++++|++|||+|
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT- 826 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITT- 826 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeecc-
Confidence 88888888654322 1 00111 25777664 59999999999999999999999999999999999
Q ss_pred eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
.||| ++|+|||++..|.+++.+ ....+.+.|.
T Consensus 827 -~GEr--veD~F~vt~~~~~~l~~~-~~q~l~~~ll 858 (867)
T COG2844 827 -FGER--VEDVFIVTDADGQALNAE-LRQSLLQRLL 858 (867)
T ss_pred -cccc--ceeEEEEeccccccCCHH-HHHHHHHHHH
Confidence 9999 999999999999999865 4455555443
No 14
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=2.1e-23 Score=226.41 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=141.2
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI 187 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 187 (414)
.+.++|+|+| +||||||++|+++|+.+||||++|+|+| .+|+++|+|+|.++.+.++ .++++++.|++++.+..
T Consensus 597 ~~~~~V~V~~-~DrpGLfa~i~~vL~~~glnI~dA~i~t-~dg~~ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~- 670 (774)
T PRK03381 597 PHMVEVTVVA-PDRRGLLSKAAGVLALHRLRVRSASVRS-HDGVAVLEFVVSPRFGSPP---DAALLRQDLRRALDGDL- 670 (774)
T ss_pred CCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEeEEEe-cCCEEEEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-
Confidence 5789999999 9999999999999999999999999999 9999999999998776532 36889999999997621
Q ss_pred cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010 188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT 267 (414)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~ 267 (414)
.. ...+.++.... . .....++..++.|.+++..+.++|+|+|+++||||||++|+++
T Consensus 671 ---------~~----------~~~~~~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~ 727 (774)
T PRK03381 671 ---------DV----------LARLAAREAAA-A---AVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARA 727 (774)
T ss_pred ---------ch----------hhhhhcccccc-c---ccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHH
Confidence 00 00011110000 0 0112346678899999999999999999999999999999999
Q ss_pred HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHH
Q 015010 268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRL 315 (414)
Q Consensus 268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L 315 (414)
|+++|+||.+|+|+ |.|+++.|+|||. .+|.++.++ ++.|++.|
T Consensus 728 L~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 728 LERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred HHHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 99999999999999 4588999999996 889988764 66776665
No 15
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=218.49 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=152.7
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccc
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLI 187 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~ 187 (414)
++.++|.|++ +|+|.||+.+++.+...|+||++|+|+|+.+|+++|+|+|+++.|.++++.+...++..|.+++....
T Consensus 682 ~~~teV~V~a-~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~- 759 (867)
T COG2844 682 SGGTEVFVYA-PDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK- 759 (867)
T ss_pred CCceEEEEEc-CCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC-
Confidence 3689999999 99999999999999999999999999999999999999999999988888888888888888876411
Q ss_pred cccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHH
Q 015010 188 SCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRT 267 (414)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~ 267 (414)
. .|+ ...+. .++..+|+.+|.|.|.+..+..+|+++|.+.||||||++++++
T Consensus 760 ----------~---------~~~-~~~r~--------~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v 811 (867)
T COG2844 760 ----------A---------QPP-RRRRI--------PRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGV 811 (867)
T ss_pred ----------C---------CCc-ccccc--------CcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHH
Confidence 1 010 00010 1234578899999999999999999999999999999999999
Q ss_pred HHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHc
Q 015010 268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
|++++++|++|+|. |.|+++.|+|||+ ..|.+++ ++..+.+.+.|.+++.
T Consensus 812 ~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ll~al~ 862 (867)
T COG2844 812 FADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALN-AELRQSLLQRLLEALL 862 (867)
T ss_pred HHhcccceeeeeec--cccccceeEEEEeccccccCC-HHHHHHHHHHHHHHhc
Confidence 99999999999998 8999999999996 8888885 4566667777766664
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=6.5e-23 Score=227.26 Aligned_cols=174 Identities=22% Similarity=0.339 Sum_probs=147.5
Q ss_pred CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010 233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL 311 (414)
Q Consensus 233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l 311 (414)
.++.|.+.+..+.++|.|+|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. .+|.+..+++++++|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~-~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT-TDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe-cCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 457788888888999999999999999999999999999999999999975 566899999995 778877778899999
Q ss_pred HHHHHHHHcCCccee--e----ec--C----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEE
Q 015010 312 CSRLRMELLRPLRVA--V----VN--R----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEI 372 (414)
Q Consensus 312 ~~~L~~~l~~~~~~~--~----~~--~----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I 372 (414)
++.|.+++.+...+. + .+ + ..+|+|.++ +.|+|.+.||||||++|+++|.++|++|.+|+|
T Consensus 797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I 876 (931)
T PRK05092 797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI 876 (931)
T ss_pred HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence 999999997653211 1 01 1 125677665 489999999999999999999999999999999
Q ss_pred ecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 373 GRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 373 ~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
.| .|++ ++|+|||++.+|.++.+++.++.|++.|.
T Consensus 877 ~T--~~~~--~~D~F~v~d~~g~~i~~~~~~~~l~~~L~ 911 (931)
T PRK05092 877 AT--YGER--AVDVFYVTDLFGLKITNEARQAAIRRALL 911 (931)
T ss_pred EE--cCCE--EEEEEEEeCCCCCcCCCHHHHHHHHHHHH
Confidence 99 8999 99999999999999986544666766664
No 17
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=6.2e-23 Score=222.76 Aligned_cols=166 Identities=16% Similarity=0.170 Sum_probs=139.4
Q ss_pred CCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHH
Q 015010 233 APVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDAL 311 (414)
Q Consensus 233 ~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l 311 (414)
.++.|.+.+.. .+.+.|+|+++||||||++|+++|+.+|+||.+|+|+| .++.+.|+|+|. ++|.+. .++++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l 658 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALL 658 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHH
Confidence 34677787777 89999999999999999999999999999999999995 555999999996 666543 25789
Q ss_pred HHHHHHHHcCCccee----eec-----CC-----CCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEE
Q 015010 312 CSRLRMELLRPLRVA----VVN-----RG-----PDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSV 370 (414)
Q Consensus 312 ~~~L~~~l~~~~~~~----~~~-----~~-----~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A 370 (414)
++.|++++.++..+. ..+ +. .++.+.++ +.|+|.|.|||||||+||++|.++|+||+.|
T Consensus 659 ~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~A 738 (774)
T PRK03381 659 RQDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWA 738 (774)
T ss_pred HHHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEE
Confidence 999999998763211 000 11 13455443 6999999999999999999999999999999
Q ss_pred EEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 371 EIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 371 ~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
+|.| .|++ ++|+|||+|.+|.+++++ ++.|+++|+
T Consensus 739 kI~T--~g~~--a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 739 RVAT--LGAD--VVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred EEee--cCCe--EEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 9999 8999 999999999999999865 799999986
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=222.57 Aligned_cols=170 Identities=14% Similarity=0.148 Sum_probs=138.7
Q ss_pred CeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHH
Q 015010 234 PVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALC 312 (414)
Q Consensus 234 ~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~ 312 (414)
.+.|.+.+.+..+.+.|.|+++||||||++|+++|+.+|+||.+|+|+|+ .++.+.|+|+|. ++|. ..+++++++|+
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~-~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTT-RHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEc-CCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 45566888888899999999999999999999999999999999999976 444899999995 6665 45678899999
Q ss_pred HHHHHHHcCCccee--ee---cC-----CCCceeeee-------eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecc
Q 015010 313 SRLRMELLRPLRVA--VV---NR-----GPDAELLVA-------NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRY 375 (414)
Q Consensus 313 ~~L~~~l~~~~~~~--~~---~~-----~~~~~v~~~-------~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~ 375 (414)
+.|+++|.++.... .. ++ ..++.+.+. +.|+|.+.|||||||+|+.+|.++|++|++|+|.|
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T- 821 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT- 821 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence 99999998764321 11 11 124556553 59999999999999999999999999999999999
Q ss_pred eeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 376 MIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 376 ~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
.|++ ++|+|||.+ .++.+.+.+++|++.|..
T Consensus 822 -~~~~--v~DvF~V~~---~~~~~~~~~~~l~~~L~~ 852 (856)
T PRK03059 822 -LGER--VEDTFLIDG---SGLSDNRLQIQLETELLD 852 (856)
T ss_pred -cCCE--EEEEEEEcC---CCCCCHHHHHHHHHHHHH
Confidence 8999 999999954 344443467888888753
No 19
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=2.1e-20 Score=142.22 Aligned_cols=69 Identities=14% Similarity=0.117 Sum_probs=65.5
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
++|||.+.|||||||+|+++|+++|++|++|||+| .|++ ++|+|||+|.+|+|+++++.++.|+++|+.
T Consensus 2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Ger--v~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGW--FMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCe--EEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 68999999999999999999999999999999999 9999 999999999999999876578999999974
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.83 E-value=3.1e-20 Score=142.33 Aligned_cols=68 Identities=21% Similarity=0.274 Sum_probs=64.2
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
++|||.|.|||||||+|+++|.++|++|++|+|+| .|++ ++|+|||+|.+|.|++++..+++|+++|.
T Consensus 2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T--~ger--a~D~FyV~d~~g~kl~~~~~~~~l~~~L~ 69 (75)
T cd04897 2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDT--DGDD--AHQEYYIRHKDGRTLSTEGERQRVIKCLE 69 (75)
T ss_pred EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEee--cCce--EEEEEEEEcCCCCccCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999 9999 99999999999999987667888888875
No 21
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=3.6e-20 Score=132.45 Aligned_cols=66 Identities=74% Similarity=1.536 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCC---CCHHHHHHHHHHhCC
Q 015010 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT---TRWSLLKNRLLEVCP 86 (414)
Q Consensus 21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g---~~~~~l~~~l~~~~~ 86 (414)
++|+|+||||.||.+|+|+++.+|||+|.++++||||+||+.+|||.++.. .+|.+|++||.++||
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~CP 69 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSACP 69 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999885 899999999999986
No 22
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=1.1e-18 Score=133.83 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=70.0
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+|+|+|.|+|||||||+|+++|+++|++|++|+|. |.|+++.|+|||. .+|.|+.++++++.|+++|.++|.++
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999998 7999999999995 89999999999999999999999763
No 23
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=1e-18 Score=133.92 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=62.6
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEe--cceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIG--RYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~--T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
|.+||.|.|||||||+|+++|+++|++|++|||+ | .|++ ++|+||| +.+|+|+++++.++.|+++|+.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T--~Ger--v~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~ 70 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKV--KGYR--EVDLFIV-QSDGKKIMDPKKQAALCARLRE 70 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCc--ccCE--EEEEEEE-eCCCCccCCHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999 9 9999 9999999 8999999875567888888763
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=1.9e-17 Score=126.90 Aligned_cols=75 Identities=63% Similarity=0.991 Sum_probs=70.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
|+++|.|+|||||||+|+++|+++|++|++|+|.+.|.|+++.|+||++.+|.++.++++++.|+++|.+++.+|
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~ 75 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP 75 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999999866899999999999877888999999999999999999765
No 25
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.69 E-value=2.6e-16 Score=119.80 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=63.4
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~ 316 (414)
+|+|+|.++|||||||+|+++|+++|++|+.|+|. |.|+++.|+|||+ .+|.|+.++++++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999999999999999998 7999999999996 88999999888888888774
No 26
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=2e-15 Score=117.18 Aligned_cols=72 Identities=82% Similarity=1.204 Sum_probs=67.0
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
.++|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+...++++++++++.|.++|+.
T Consensus 2 ~~ei~~-~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFC-SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHch
Confidence 689999 999999999999999999999999999989999999999999877656778999999999999864
No 27
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.61 E-value=5.5e-15 Score=113.81 Aligned_cols=71 Identities=28% Similarity=0.367 Sum_probs=64.4
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLH-TRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~-~~~~~~~i~~~L~~~l 182 (414)
++|+|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|+++.+... ++++++++++.|.++|
T Consensus 2 ~~i~v~~-~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYT-PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEe-cCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 6899999 999999999999999999999999999988999999999998777654 6789999999988764
No 28
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.1e-14 Score=110.90 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=64.5
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCC-CC-CCCHHHHHHHHHHHHHHHc
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR-EL-LHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~-~~-~~~~~~~~~i~~~L~~~l~ 183 (414)
|.|+|++ +||||||++|+++|+.+||||++|+++| .+++++|+|+|+++. +. ..+++++++|++.|.++|.
T Consensus 1 t~~~v~~-~Dr~gLl~~i~~~l~~~~lnI~~A~i~t-~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTG-TDRPGLLSEVFAVLADLHCNVVEARAWT-HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHCCCcEEEEEEEE-ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5799999 9999999999999999999999999999 599999999999876 54 3577899999999999875
No 29
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=2.8e-14 Score=110.20 Aligned_cols=68 Identities=16% Similarity=0.178 Sum_probs=61.7
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCC-CCCCCchHHHHHHHHHHc
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEAD-GNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~-g~~l~~~~~~~~i~~~L~ 411 (414)
++|||.+.||||||++|+++|.++|+||+.|+|.| .|++ +.|+|||+|++ |.++.+++.+++|++.|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~--~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~ 69 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGR--LACVIYVRDEETGAPIDDPIRLASIEDRLD 69 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCE--EEEEEEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999 8999 99999999998 888876546788888775
No 30
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=4e-14 Score=109.02 Aligned_cols=71 Identities=23% Similarity=0.359 Sum_probs=63.3
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
+.|+|+++||||||++++++|+.+|+||.+|+|+|. .++++.|+|++. ++|.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999964 556999999995 77888877888999999987754
No 31
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=3.7e-15 Score=111.22 Aligned_cols=73 Identities=67% Similarity=1.041 Sum_probs=67.6
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC----chHHHHHHHHHHccC
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP----RNKIEDLVRKILMGW 413 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~----~~~~~~~i~~~L~~~ 413 (414)
|++|++|+.||.++||||.||+.+|++|++|+|..++.++++|+++.|++.+..+. ++ .+++++++++.||||
T Consensus 1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw 77 (77)
T cd04898 1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW 77 (77)
T ss_pred CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999887554 65 567899999999999
No 32
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.53 E-value=9.9e-14 Score=107.63 Aligned_cols=71 Identities=20% Similarity=0.309 Sum_probs=62.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
.++|+++||||||++++++|+++|+||.+|+|+|+ .++++.|+|+|. ++|. ..++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence 58999999999999999999999999999999964 677999999995 6555 55678899999999998864
No 33
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.47 E-value=1.9e-12 Score=117.54 Aligned_cols=135 Identities=9% Similarity=0.104 Sum_probs=92.1
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS 188 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 188 (414)
.+++|++.| +||||+.+.|+++|+++||||.+.+... .+|.+.-++.|+.+ +...++++..|...-...
T Consensus 7 ~~lviTviG-~DrpGIVa~vs~~l~~~g~NI~ds~~t~-lgg~Fa~i~lvs~~------~~~~~~le~~L~~l~~~~--- 75 (190)
T PRK11589 7 HYLVITALG-ADRPGIVNTITRHVSSCGCNIEDSRLAM-LGEEFTFIMLLSGS------WNAITLIESTLPLKGAEL--- 75 (190)
T ss_pred cEEEEEEEc-CCCChHHHHHHHHHHHcCCCeeehhhHh-hCCceEEEEEEeCC------hhHHHHHHHHHHhhhhhc---
Confidence 588999999 9999999999999999999999999998 67776667888542 335556655555433210
Q ss_pred ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHH
Q 015010 189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTL 268 (414)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L 268 (414)
.+ ...+.. .... . .......+.++|++.||||++++++++|
T Consensus 76 --------~L--------------~i~v~~-------~~~~---~-------~~~~~~~~~v~v~G~DrPGIV~~vT~~l 116 (190)
T PRK11589 76 --------DL--------------LIVMKR-------TTAR---P-------RPAMPATVWVQVEVADSPHLIERFTALF 116 (190)
T ss_pred --------Ce--------------EEEEEe-------cccc---c-------cccCCceEEEEEEECCCCCHHHHHHHHH
Confidence 00 001100 0000 0 0001113689999999999999999999
Q ss_pred HhCCceEEeEEEEEeeCCC--EEEEEEEE
Q 015010 269 KDYNTQVSYGRFFAKPRGN--CEVDLFIM 295 (414)
Q Consensus 269 ~~~~l~I~~A~I~t~t~g~--~~~D~F~v 295 (414)
+++|+||.+ +.|.+.+. ...+.|..
T Consensus 117 a~~~iNI~~--L~T~~~~a~~~~~~lf~~ 143 (190)
T PRK11589 117 DSHHMNIAE--LVSRTQPAEGERPAQLHI 143 (190)
T ss_pred HHcCCChhh--eEEeeecCCCCCcccEEE
Confidence 999999997 55445542 44555654
No 34
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.44 E-value=9.5e-13 Score=98.96 Aligned_cols=66 Identities=24% Similarity=0.373 Sum_probs=56.4
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
.+|.|++ +||||||++++++|+.+|+||++|+|+|+.+|+++|+|+|.+..+. .-+.+++.|+++|
T Consensus 2 ~eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~-----~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG-----ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc-----chHHHHHHHHHhh
Confidence 5799999 9999999999999999999999999999999999999999986552 2244656665554
No 35
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.40 E-value=9.9e-12 Score=112.85 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=103.7
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-Ccc
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR-PLR 324 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~-~~~ 324 (414)
.+.+|++.++|||||+++++++|+++|+||.+.+.. ..|+.+.-++.+. +. ......|+..|...-+. .+.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L~ 78 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDLL 78 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCeE
Confidence 578999999999999999999999999999998886 5666666666664 21 23566777777554422 332
Q ss_pred eeeec--CCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEE----EEEEEcCCCCCCC
Q 015010 325 VAVVN--RGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVY----RILLDEADGNLEP 398 (414)
Q Consensus 325 ~~~~~--~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d----~Fyv~d~~g~~l~ 398 (414)
+.+.. ............++|.+.||||++++||++|+++|+||..-+..| ++...+..+ .|.+.-+.+..+.
T Consensus 79 i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~--~~a~~~~~~lf~~~~~v~lP~~~~~~ 156 (190)
T PRK11589 79 IVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRT--QPAEGERPAQLHIQITAHSPASQDAA 156 (190)
T ss_pred EEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEee--ecCCCCCcccEEEEEEEEcCCCCCHH
Confidence 22211 110111111248999999999999999999999999999998888 553111333 4445556665554
Q ss_pred c-hHHHHHHHHHH
Q 015010 399 R-NKIEDLVRKIL 410 (414)
Q Consensus 399 ~-~~~~~~i~~~L 410 (414)
. ....+.+.++|
T Consensus 157 ~L~~~l~~l~~eL 169 (190)
T PRK11589 157 NIEQAFKALCTEL 169 (190)
T ss_pred HHHHHHHHHHHHh
Confidence 2 11245555554
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.31 E-value=3.1e-11 Score=128.90 Aligned_cols=144 Identities=14% Similarity=0.161 Sum_probs=114.2
Q ss_pred EEEEEEe-cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 015010 248 TLIQILG-QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMELLRPLRV 325 (414)
Q Consensus 248 t~v~V~~-~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l~~~~~~ 325 (414)
..++|.. +|+||+|.+++++|+.++++|.+|++. +.| .+...|.|. ..|.+. ++ ..+++.+..++.+.+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~~~-~~~~~~~v~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--ANG-PWSAEFDVRANGPQDF-DP---QEFLQAYKSGVYSELPD 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--cCC-ceEEEEEEecCCCCCC-Ch---HHHHHHHHHhhcCCCCc
Confidence 4677888 999999999999999999999999998 344 778999997 556553 33 56888888888887554
Q ss_pred eeecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHH
Q 015010 326 AVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDL 405 (414)
Q Consensus 326 ~~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~ 405 (414)
. ..+++..+++.+++||++.||||+|+.|+++|- .|..|+++| .|.. ++|.||+.. | .++.++...
T Consensus 620 ~--~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~--~g~~--~~~~~~~~~--~--~~r~~~~~~ 685 (693)
T PRK00227 620 P--APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAST--PGAT--MIVQAALKP--G--FDRATVERD 685 (693)
T ss_pred c--cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcC--CCcc--eEEEEEecC--c--ccHHHHHHH
Confidence 2 223345567779999999999999999999999 899999999 9999 999999982 2 234445566
Q ss_pred HHHHHcc
Q 015010 406 VRKILMG 412 (414)
Q Consensus 406 i~~~L~~ 412 (414)
|.+.|.+
T Consensus 686 ~~~~~~~ 692 (693)
T PRK00227 686 VTRVLAG 692 (693)
T ss_pred HHHHHhc
Confidence 6666543
No 37
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=2.3e-11 Score=93.29 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=60.8
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHc
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILM 411 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~ 411 (414)
+.++|.+.||||+|++|+.+|+++|+||.+|+|.| .+++ +.|+|+|.+++|.+++.+ ..++|++.|+
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~--~~d~f~v~~~~~~~~~~~-~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDM--AVNVFYVTDANGNPVDPK-TIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCe--EEEEEEEECCCCCcCCHH-HHHHHHHHhc
Confidence 37899999999999999999999999999999999 7777 999999999999988544 6899999886
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=3e-11 Score=92.72 Aligned_cols=67 Identities=31% Similarity=0.439 Sum_probs=57.6
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
+.|+|.+ +||||+|++|+++|+.+|+||++|+++| .+++++|+|+|.++.+...++++++++++.|-
T Consensus 2 tri~V~~-~D~~Gll~~i~~~l~~~~lnI~sa~i~t-~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRT-EDRVGLLSDVTRVFRENGLTVTRAEIST-QGDMAVNVFYVTDANGNPVDPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEE-CCccCHHHHHHHHHHHCCcEEEEEEEec-CCCeEEEEEEEECCCCCcCCHHHHHHHHHHhc
Confidence 6899999 9999999999999999999999999998 57799999999987766446667776665553
No 39
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.29 E-value=3.5e-11 Score=128.53 Aligned_cols=142 Identities=16% Similarity=0.048 Sum_probs=112.8
Q ss_pred EEEEeC-CCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCC--CCHHHHHHHHHHhCCCCCcCCcccccc
Q 015010 22 VITVNC-PDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPT--TRWSLLKNRLLEVCPSYFSTSRIYSYR 98 (414)
Q Consensus 22 ~v~v~~-~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g--~~~~~l~~~l~~~~~~~~~~~~~~~~~ 98 (414)
.|+|.. ||++|++.+++++|+.++++|++|.+.++|. +...|.|.+.+| ++...|++.+.....+..+.....+++
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVANGP-WSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGITA 626 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEecCCc-eEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCCc
Confidence 455555 9999999999999999999999999999655 579999999998 899999999987665544321101111
Q ss_pred cccccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHH
Q 015010 99 LENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHL 178 (414)
Q Consensus 99 ~~~~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L 178 (414)
.....++++|.+ .||+|+|+.++++|. +|.+|++.| .+..++|.|++.+. ..+.+++..+
T Consensus 627 -------~~~~~~~~e~r~-~dr~g~l~~~~~~l~----~~~~~~~~~-~g~~~~~~~~~~~~-------~~r~~~~~~~ 686 (693)
T PRK00227 627 -------TFWHGNILEVRT-EDRRGALGALLGVLP----DLLWITAST-PGATMIVQAALKPG-------FDRATVERDV 686 (693)
T ss_pred -------eEeeCcEEEEEe-CccccHHHHHHHHhh----hhhhHhhcC-CCcceEEEEEecCc-------ccHHHHHHHH
Confidence 111237999999 999999999999999 999999999 89999999999842 1346677777
Q ss_pred HHHHcc
Q 015010 179 EAVLGK 184 (414)
Q Consensus 179 ~~~l~~ 184 (414)
..+|.+
T Consensus 687 ~~~~~~ 692 (693)
T PRK00227 687 TRVLAG 692 (693)
T ss_pred HHHHhc
Confidence 777643
No 40
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=5.8e-11 Score=89.29 Aligned_cols=64 Identities=23% Similarity=0.216 Sum_probs=58.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCCCHHHHHHHHHHh
Q 015010 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTTRWSLLKNRLLEV 84 (414)
Q Consensus 21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~ 84 (414)
.+|.|.++|+||||++++++|+.+||+|++|+|. |.+||++|+|+|.+..|-+..-|.+.++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~~~~~~~~~~~~ 66 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGETAALGHALQKE 66 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccchHHHHHHHHHh
Confidence 4789999999999999999999999999999998 578899999999999998887787777653
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.24 E-value=9.3e-11 Score=89.02 Aligned_cols=70 Identities=37% Similarity=0.496 Sum_probs=62.4
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
|.|+|.+ +||||+|++|+++|+.+|+||.++++.| .+++++|+|++.+..+.+.+.+++++|++.|.+++
T Consensus 1 ~~l~v~~-~d~~gll~~i~~~l~~~~~~I~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTA-LDRPGLLADVTRVLAELGLNIHSAKIAT-LGERAEDVFYVTDADGQPLDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEE-cCCccHHHHHHHHHHHCCCeEEEEEEEe-cCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhhC
Confidence 4789999 9999999999999999999999999998 55699999999998776667789999999887753
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.13 E-value=5.6e-10 Score=84.66 Aligned_cols=69 Identities=29% Similarity=0.517 Sum_probs=59.8
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
|.+.|.++|+||+|++|+++|++++++|.++++. +.++.+.|+|++. .+|.+ .+.+++++|+++|+++|
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999998 4455999999996 77777 45678899999987654
No 43
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.01 E-value=2.6e-09 Score=93.24 Aligned_cols=157 Identities=13% Similarity=0.155 Sum_probs=103.0
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS 188 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 188 (414)
++++|++++ +||||+...|+++..++||||.++|+.+ .++.+.-+..++.+ ++... .|+..|....
T Consensus 4 ~~LvItavg-~d~pgl~~~lar~v~s~Gcn~leSRla~-~g~~~a~i~lisgs------~dav~----~le~~l~~l~-- 69 (176)
T COG2716 4 HYLVITAVG-ADRPGLVNTLARAVASSGCNWLESRLAM-LGEEFAGIMLISGS------WDAVT----LLEATLPLLG-- 69 (176)
T ss_pred cEEEEEEec-CCCcHHHHHHHHHHHhcCCcchHHHHHH-hhcceeEEEEEeeC------HHHHH----HHHHHhhccc--
Confidence 358999999 9999999999999999999999999999 67766667778763 33334 4455554321
Q ss_pred ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHH
Q 015010 189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTL 268 (414)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L 268 (414)
.+. | |.-.|. ++.. .+ .......+.+.|.+.||||++.+++..|
T Consensus 70 -------~~~-----~-------L~v~m~-------rt~~----~~------~~a~~~~v~v~v~a~DrpgIv~~~T~lf 113 (176)
T COG2716 70 -------AEL-----D-------LLVVMK-------RTGA----HP------TPANPAPVWVYVDANDRPGIVEEFTALF 113 (176)
T ss_pred -------ccC-----C-------eEEEEe-------ecCC----Cc------cCCCCceEEEEEEecCCccHHHHHHHHH
Confidence 000 0 111221 1100 00 1223345689999999999999999999
Q ss_pred HhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHH
Q 015010 269 KDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 269 ~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~ 317 (414)
..+|+||.+-.-.+....+.-...|..+ .-+-|.. -....|++.+++
T Consensus 114 ~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~a 161 (176)
T COG2716 114 DGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEA 161 (176)
T ss_pred HhcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHH
Confidence 9999999863333222333566778765 3333332 234567776644
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.92 E-value=1.5e-08 Score=76.49 Aligned_cols=68 Identities=34% Similarity=0.569 Sum_probs=59.4
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAV 181 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~ 181 (414)
.|.|.+ +|+||+|++++++|+++|++|.++.+.+..+ +..++|++.++.+...+++++++|++.|.++
T Consensus 2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYA-PDRPGLLADITRVLADLGLNIHDARISTTGE-RALDVFYVTDSDGRPLDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEe-CCCCCHHHHHHHHHHHCCCeEEEEEEeecCC-EEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 688999 9999999999999999999999999999544 9999999998766555667889898888764
No 45
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.80 E-value=5.8e-08 Score=73.16 Aligned_cols=67 Identities=25% Similarity=0.505 Sum_probs=56.5
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe-cCCCCCCChHHHHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ-ADGKKIVDPSKQDALCSRLRME 318 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~-~~g~~~~~~~~~~~l~~~L~~~ 318 (414)
.+.|.++|+||+|++++++|+.+|++|.++++.+ .++...+.|++. +++.. .++++++++++.|..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 6889999999999999999999999999999984 334899999996 66665 4567888888888664
No 46
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=98.78 E-value=6e-08 Score=84.77 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=94.8
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC--c
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP--L 323 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~--~ 323 (414)
.|.+|++.+.||||+.-.+++...+.|.||..+++. ..|+.+.-+..+ .|. .+...+|++.|.. +..+ +
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~li--sgs----~dav~~le~~l~~-l~~~~~L 74 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLI--SGS----WDAVTLLEATLPL-LGAELDL 74 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEE--eeC----HHHHHHHHHHhhc-ccccCCe
Confidence 568999999999999999999999999999999998 566444333333 332 3445667666633 3332 2
Q ss_pred ceeeecCCCCc-e-eeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecce-eCceeeEEEEEEEEcCCCCCCC
Q 015010 324 RVAVVNRGPDA-E-LLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYM-IHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 324 ~~~~~~~~~~~-~-v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~-~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
.+.+.+-+..+ . -.-...++|.+.||||++.++|+.|..+|++|..-.-.|.. .|. -.--|...-.-+-|.+
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s---~~~lfha~it~~lPa~ 149 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGS---SAPLFHAQITARLPAN 149 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCC---CccceehhhhccCCCc
Confidence 22222222211 1 11123789999999999999999999999999988888731 122 2234666444455655
No 47
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.67 E-value=2.1e-07 Score=72.04 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=54.3
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
++.|++.| +||||+++.++++|+++||||.+.+..+ .++.+.-++.|..+ +...+++++.|++....
T Consensus 2 ~~vItv~G-~DrpGiv~~v~~~l~~~g~ni~d~~~~~-~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVG-PDRPGIVAAVTGVLAEHGCNIEDSRQAV-LGGRFTLIMLVSIP------EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEE-E--TTHHHHHHHHHHCTT-EEEEEEEEE-ETTEEEEEEEEEES------HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEe-cCCCcHHHHHHHHHHHCCCcEEEEEEEE-EcCeEEEEEEEEeC------cccHHHHHHHHHHHHHH
Confidence 57899999 9999999999999999999999999999 77777777888763 55778888888876543
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.43 E-value=1.2e-06 Score=67.89 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=50.8
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
+.|++.| +||||+.++|+++|+++||||.+.+.++ .++...-.+.+..+ ....+.+++.|+...
T Consensus 2 ~iltv~g-~Dr~GiVa~vs~~la~~g~nI~d~~q~~-~~~~F~m~~~~~~~------~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALG-TDRPGILNELTRAVSESGCNILDSRMAI-LGTEFALTMLVEGS------WDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEe-CCCChHHHHHHHHHHHcCCCEEEceeeE-EcCEEEEEEEEEec------cccHHHHHHHHHHHH
Confidence 6889999 9999999999999999999999999999 67766555555532 123567777777644
No 49
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.39 E-value=3.3e-06 Score=62.63 Aligned_cols=63 Identities=27% Similarity=0.484 Sum_probs=48.1
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLEAV 181 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~ 181 (414)
+.|.+.+ +||||+|++++.+|+++|+||..+.+.+..+ ...+.++.+.+ ....+++.+.|+++
T Consensus 1 ~~v~v~~-~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIV-PDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD-------EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEE-ETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE-------GHGHHHHHHHHHHH
T ss_pred CEEEEEc-CCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC-------CCCHHHHHHHHHcc
Confidence 5788999 9999999999999999999999999999655 24444444433 34556666666654
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.36 E-value=2.9e-06 Score=63.00 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=45.8
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRME 318 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~ 318 (414)
|.|.|.++||||+|++++.+|+++|+||.++...+...+ ....|.... .+....+++.++|++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG--VGIVFIVIV-----VDEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST--TEEEEEEEE-----EEGHGHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC--ceEEEEEEE-----CCCCCHHHHHHHHHcc
Confidence 568999999999999999999999999999999865332 223333221 1234556677777654
No 51
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.25 E-value=1.1e-05 Score=62.39 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=50.0
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
+.+|++.++||||+++.++++|+++|+||.+.+.. +.++...-++.++.. ++..++|++.|.+.-
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence 46899999999999999999999999999998887 566677777777621 346678888887654
No 52
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.21 E-value=4.6e-06 Score=64.27 Aligned_cols=65 Identities=23% Similarity=0.209 Sum_probs=51.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
+|++.| +||||+.++++++|+++||||.+.+..+ .+++..-.+.+.-+.+ ...+.+++.|+....
T Consensus 1 ~vtv~G-~DrpGiv~~vt~~la~~~~nI~dl~~~~-~~~~f~~~~~v~~p~~-----~~~~~l~~~l~~l~~ 65 (75)
T cd04870 1 LITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAV-IHGRLSLGILVQIPDS-----ADSEALLKDLLFKAH 65 (75)
T ss_pred CEEEEc-CCCCCHHHHHHHHHHHCCCCEEecccEE-EcCeeEEEEEEEcCCC-----CCHHHHHHHHHHHHH
Confidence 378999 9999999999999999999999999888 5666666777775422 235667777777654
No 53
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.14 E-value=8.6e-06 Score=59.00 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
++|+|.| ||+.||=.++++++.+.|++|..+.+.| .+....-+|+|..... .-+-+|+.++++|.++.
T Consensus 1 tvitvnC-PDktGLgcdlcr~il~fGl~i~rgd~sT-DGkWCyiv~wVv~~~~--~~~~rW~lLK~RL~~~C 68 (69)
T cd04894 1 SVITINC-PDKTGLGCDLCRIILEFGLNITRGDDST-DGRWCYIVFWVVPRPP--SIKVRWDLLKNRLMSAC 68 (69)
T ss_pred CEEEEeC-CCccCcccHHHHHHHHhceEEEeccccc-CCcEEEEEEEEecCCC--CCcccHHHHHHHHHhcC
Confidence 4789999 9999999999999999999999999999 6667888899987432 23568999999888753
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=1.3e-05 Score=61.82 Aligned_cols=52 Identities=25% Similarity=0.301 Sum_probs=44.0
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
.+.|.|+||||++++||++|+++|+||...+-.+ .++. -.-.|.+.-+.+..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~--~~~~--f~~~~~v~~p~~~~ 52 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAV--IHGR--LSLGILVQIPDSAD 52 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEE--EcCe--eEEEEEEEcCCCCC
Confidence 3789999999999999999999999999999888 7777 55577787665533
No 55
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.97 E-value=0.00063 Score=55.98 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=82.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCccccccccc
Q 015010 22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSYRLEN 101 (414)
Q Consensus 22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 101 (414)
.|-+-.-||||-|..++..|..+|.+|+.-.|.--|. |=..-.|. .+.+.-++-|.++. +...
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d-FGIiRmvV----~~~d~A~~~Lee~g-----------F~Vr- 67 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD-FGIIRMVV----DRPDEAHSVLEEAG-----------FTVR- 67 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC-cceEEEEc----CChHHHHHHHHHCC-----------cEEE-
Confidence 4667788999999999999999999999887763222 21222233 23334444444321 1111
Q ss_pred ccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 102 QQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 102 ~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
-.-++-|-. +|+||=|++|+.+|.++++|+-.+..+++...+++-+|.+.+
T Consensus 68 -------~~dVlaVEm-eD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 68 -------ETDVLAVEM-EDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred -------eeeEEEEEe-cCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 135777888 999999999999999999999999999988888887776644
No 56
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.97 E-value=2.1e-05 Score=62.55 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=51.6
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
..|++.| +||||++++|+++|+++||||.+.+..+ .++...-.+.+..+. .....+.+++.|+....
T Consensus 2 ~vl~i~g-~D~pGiva~vt~~la~~g~nI~~~~~~~-~~~~f~~~~~v~~~~----~~~~~~~L~~~l~~l~~ 68 (88)
T cd04872 2 AVITVVG-KDRVGIVAGVSTKLAELNVNILDISQTI-MDGYFTMIMIVDISE----SNLDFAELQEELEELGK 68 (88)
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHcCCCEEechhHh-hCCccEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence 5789999 9999999999999999999999999999 666655556666432 01234667777777554
No 57
>PRK00194 hypothetical protein; Validated
Probab=97.91 E-value=3.5e-05 Score=61.39 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=50.1
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
.+.|++.| +||||++++++++|+++|+||.+.+..+ .++...-.+.+.-+.. +...+.+++.|....
T Consensus 3 ~~~ltv~g-~DrpGiva~vt~~la~~g~nI~~~~~~~-~~~~~~~~~~v~~~~~----~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 3 KAIITVIG-KDKVGIIAGVSTVLAELNVNILDISQTI-MDGYFTMIMLVDISES----KKDFAELKEELEELG 69 (90)
T ss_pred eEEEEEEc-CCCCCHHHHHHHHHHHcCCCEEehhhHh-hCCeeEEEEEEEecCC----CCCHHHHHHHHHHHH
Confidence 57899999 9999999999999999999999999998 6776655555543310 112355666666644
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=6.2e-05 Score=57.66 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=46.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCC-eEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDG-RVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
.|++.| +||||++++|+++|+++|+||.+.+.++..++ ...-.+.+..+. .+...+.+++.|+....
T Consensus 1 ii~v~g-~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSC-PDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEG----FDLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEc-CCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCC----CCCCHHHHHHHHHHHHH
Confidence 378999 99999999999999999999999999973333 222223332211 01135677777776543
No 59
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.90 E-value=0.0016 Score=53.69 Aligned_cols=112 Identities=13% Similarity=0.214 Sum_probs=79.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccccccc
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCEI 191 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~ 191 (414)
+|.++. .++||=|+.++..|.++|+||+.-.|.- .+.+-+--+.|.. ++. - .++|..
T Consensus 5 QISvFl-ENk~GRL~~~~~~L~eagINiRA~tiAd-t~dFGIiRmvV~~-------~d~---A----~~~Lee------- 61 (142)
T COG4747 5 QISVFL-ENKPGRLASVANKLKEAGINIRAFTIAD-TGDFGIIRMVVDR-------PDE---A----HSVLEE------- 61 (142)
T ss_pred EEEEEe-cCCcchHHHHHHHHHHcCCceEEEEecc-ccCcceEEEEcCC-------hHH---H----HHHHHH-------
Confidence 688999 9999999999999999999999777765 3444444454533 111 1 112211
Q ss_pred cCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHHHhC
Q 015010 192 ELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDY 271 (414)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~ 271 (414)
..+ .|.+. .++-|...|+||=|+.|+.+|.++
T Consensus 62 -----------------------~gF------------------~Vr~~-------dVlaVEmeD~PG~l~~I~~vl~d~ 93 (142)
T COG4747 62 -----------------------AGF------------------TVRET-------DVLAVEMEDVPGGLSRIAEVLGDA 93 (142)
T ss_pred -----------------------CCc------------------EEEee-------eEEEEEecCCCCcHHHHHHHHhhc
Confidence 110 12121 278888999999999999999999
Q ss_pred CceEEeEEEEEeeCCCEEEEEEEE
Q 015010 272 NTQVSYGRFFAKPRGNCEVDLFIM 295 (414)
Q Consensus 272 ~l~I~~A~I~t~t~g~~~~D~F~v 295 (414)
++|+.+...+++ ....+.=+|.+
T Consensus 94 diNldYiYAFv~-ek~KAlli~r~ 116 (142)
T COG4747 94 DINLDYIYAFVT-EKQKALLIVRV 116 (142)
T ss_pred CcCceeeeeeee-cCceEEEEEEh
Confidence 999999888865 44567665554
No 60
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.85 E-value=9.9e-05 Score=57.17 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=53.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCC
Q 015010 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCP 86 (414)
Q Consensus 21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~ 86 (414)
.++++.||||||+.+.++++|+++|.+|.+...+..+++|+-...+... ..+...|+..++.++.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-WDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-cccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999888888777777644 2345667777776553
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.84 E-value=8.6e-05 Score=57.71 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=48.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-----CeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-----GRVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-----g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
.|++.| +||||++++|+++|+++|+||.+.+..+... +...-.+.+..+. ....+++++.|+....
T Consensus 1 ~l~v~g-~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-----~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 1 VVEVVG-NDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-----GTDLDALREELEELCD 71 (81)
T ss_pred CEEEEe-CCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-----CCCHHHHHHHHHHHHH
Confidence 378999 9999999999999999999999999998541 3444345554432 1134667777776543
No 62
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.73 E-value=0.00018 Score=55.91 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=46.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL 315 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L 315 (414)
+.+.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.-.|.+. +.+.+.++.+.+.|
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L 69 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 5799999999999999999999999999998887532244666666665 33456667776665
No 63
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.70 E-value=0.00025 Score=55.06 Aligned_cols=64 Identities=25% Similarity=0.365 Sum_probs=46.9
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.+.|.|.+ .||||+|++|+.++++.|+||.+.++.+.. ++.+.-.|.+.- .+.+.++.+.+.|+
T Consensus 6 ~~~l~i~~-~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-----~d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEA-EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-----KDLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEE-E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-----SSHHHHHHHHHHHC
T ss_pred EEEEEEEE-EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-----CCHHHHHHHHHHHH
Confidence 46899999 999999999999999999999999999964 677666666654 24555555544443
No 64
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.68 E-value=0.00027 Score=54.84 Aligned_cols=66 Identities=15% Similarity=0.159 Sum_probs=55.0
Q ss_pred EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecC------CEEEEEEEEEcCCCCCHHHHHHHHHHhCCC
Q 015010 22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDG------KWCYLVFWVVGKPTTRWSLLKNRLLEVCPS 87 (414)
Q Consensus 22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg------~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~ 87 (414)
+|++.|+|++|+.++++++|+++|++|.+....+++ +.+.-.+.+..+.+.+...|+..+..+|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDD 72 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998866 677777777766556677788888776654
No 65
>PRK00194 hypothetical protein; Validated
Probab=97.62 E-value=0.00022 Score=56.76 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=55.4
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCC-CCCHHHHHHHHHHhCCC
Q 015010 20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKP-TTRWSLLKNRLLEVCPS 87 (414)
Q Consensus 20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~-g~~~~~l~~~l~~~~~~ 87 (414)
...+++.|+|+||++++++++|+++|++|....-.+.++.++-.+.+..+. +.+.+.|+..|+.++..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~ 71 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKE 71 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999988877888888866666544 34566788777776543
No 66
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.58 E-value=0.00071 Score=51.46 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=47.3
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
|.+.+ .||||+|++|+.++++.|.||.+....+..++.+...|.+.- .+.+.++.+.+.|++
T Consensus 2 l~v~~-~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-----~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLEL-PNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-----PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEe-CCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-----CCHHHHHHHHHHHhc
Confidence 67889 999999999999999999999998887755676655566653 245566666555554
No 67
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.55 E-value=0.00054 Score=52.37 Aligned_cols=65 Identities=17% Similarity=0.255 Sum_probs=51.5
Q ss_pred EEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe--cCCEEEEEEEEEcCCC-CCHHHHHHHHHHhCC
Q 015010 22 VITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK--DGKWCYLVFWVVGKPT-TRWSLLKNRLLEVCP 86 (414)
Q Consensus 22 ~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t--dg~~~~d~f~v~~~~g-~~~~~l~~~l~~~~~ 86 (414)
.|++.||||+|+..+++++|+++|.+|.+..-.+ .++-+.-.+.+..+.+ .+...|+..|+++|.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAA 68 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999998875 4455555555555544 567788888887764
No 68
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00033 Score=55.59 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=55.3
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCC-CCCHHHHHHHHHHhCCC
Q 015010 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKP-TTRWSLLKNRLLEVCPS 87 (414)
Q Consensus 21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~-g~~~~~l~~~l~~~~~~ 87 (414)
..|++.|||+||+.+++.++|+++|.+|.+..-.+.++-|.-.+.+.-+. +.+...|+..|..++..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999888777777777777554 45667788888776644
No 69
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0014 Score=49.73 Aligned_cols=61 Identities=5% Similarity=0.146 Sum_probs=45.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
+.|.+.||||+|++|+.++++.|.||.+....+. ..+.+.-.|.+. +.+.+.++.+.+.|+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~ 62 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVR 62 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHh
Confidence 6789999999999999999999999998776543 334555556664 334556667766664
No 70
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.00022 Score=53.83 Aligned_cols=70 Identities=11% Similarity=0.263 Sum_probs=54.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE--ecCCCCCCChHHHHHHHHHHHHHH
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM--QADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v--~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
|+++++-||-.|||++-+|+.+++-|++|.|.....+++..++|.+ ...++.+.......++.+.+.+.+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999865567788888755 333333554555667777766655
No 71
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.27 E-value=0.001 Score=64.68 Aligned_cols=69 Identities=13% Similarity=0.161 Sum_probs=48.3
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE--eCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS--TTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~--T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
.+.|++.| +||||+.+.|+++|+++|+||.+.+.+ +..+.+++ .+.+.+... .....+++++.|.++..
T Consensus 9 ~~iitv~G-~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~---~~~~~~~l~~~l~~l~~ 79 (289)
T PRK13010 9 SYVLTLAC-PSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSA---EAASVDTFRQEFQPVAE 79 (289)
T ss_pred CEEEEEEC-CCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCC---CCCCHHHHHHHHHHHHH
Confidence 57899999 999999999999999999999999997 43444443 222332110 11134667777776544
No 72
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.25 E-value=0.00037 Score=54.81 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=52.4
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
...|+|.+ .||||+.+.++++|+++|.||++-...- .+|+.--.+.|.-+. .......+++.|......
T Consensus 3 ~avITV~G-kDr~GIva~is~vLAe~~vNIldisQtv-m~~~ftm~~lV~~~~----~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 3 RAVITVIG-KDRVGIVAAVSRVLAEHGVNILDISQTV-MDGFFTMIMLVDISK----EVVDFAALRDELAAEGKK 71 (90)
T ss_pred eEEEEEEc-CCCCchhHHHHHHHHHcCCcEEEHHHHH-HhhhceeeeEEcCCh----HhccHHHHHHHHHHHHHh
Confidence 46899999 9999999999999999999999988766 677755556665421 233456677777776643
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.19 E-value=0.01 Score=57.71 Aligned_cols=35 Identities=9% Similarity=0.094 Sum_probs=32.0
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
+.+|+|.|+||||+.+.|+..|+++|+||.+.+-+
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 46899999999999999999999999999986654
No 74
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.18 E-value=0.0019 Score=62.55 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=48.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.|++.| +||||+.+.|+++|+++|+||.+.+.++.. +++..-.+.+..+.. ....+.+++.|..
T Consensus 2 ~itv~g-~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~----~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSC-PDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGF----RLEESSLLAAFKS 66 (280)
T ss_pred EEEEEC-CCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHH
Confidence 589999 999999999999999999999999999842 355544555553311 1235677777777
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.18 E-value=0.013 Score=56.83 Aligned_cols=108 Identities=10% Similarity=0.121 Sum_probs=62.0
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCccee--
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVA-- 326 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~-- 326 (414)
+++|.|+||||+.+.|++.|+++|+||.+.+-+....++...=.+.++..+... ..+.|++.|.+++..+..+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~----~~~~l~~~l~~~~~~~~~l~i~ 77 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRL----EESSLLAAFKSALAEKFEMTWE 77 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCC----CHHHHHHHHHHHHHHHhCCEEE
Confidence 589999999999999999999999999997665332233333333334222111 24567777766344333221
Q ss_pred eecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCce
Q 015010 327 VVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSIS 366 (414)
Q Consensus 327 ~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~ 366 (414)
+.....+. .|=|....+---|.+|-.+.+.-.++
T Consensus 78 l~~~~~~~------ki~vl~Sg~g~nl~~l~~~~~~g~l~ 111 (280)
T TIGR00655 78 LILADKLK------RVAILVSKEDHCLGDLLWRWYSGELD 111 (280)
T ss_pred EecCCCCc------EEEEEEcCCChhHHHHHHHHHcCCCC
Confidence 11111111 34444444455566666666655554
No 76
>PRK07431 aspartate kinase; Provisional
Probab=97.12 E-value=0.54 Score=50.49 Aligned_cols=264 Identities=16% Similarity=0.164 Sum_probs=141.9
Q ss_pred eCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCCC-HHHHHHHHHHhCCCCCcCCccccccccccc
Q 015010 26 NCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTTR-WSLLKNRLLEVCPSYFSTSRIYSYRLENQQ 103 (414)
Q Consensus 26 ~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~~-~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (414)
..++++|.+.++-..|+++|.+|---.-+ +.++-.-..|.+...+-.. .+.|+....++... .+
T Consensus 277 ~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~------------~i-- 342 (587)
T PRK07431 277 RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGA------------EV-- 342 (587)
T ss_pred cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCC------------cE--
Confidence 45788999999999999999998755432 1222223346663321111 11222211111110 00
Q ss_pred CCCCCCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 104 QPKPPDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 104 ~~~~~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.-..+...|.+.+ . +.+|+++++..+|++.|+||..-. + .+..+ .|.|. ++..++..+.|.+
T Consensus 343 -~~~~~~a~IsvvG-~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~I-s~vv~--------~~d~~~av~~Lh~ 407 (587)
T PRK07431 343 -LVETNVAKLSISG-AGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKV-SCVID--------AEDGDKALRAVCE 407 (587)
T ss_pred -EEeCCeEEEEEEC-CCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEE-EEEEc--------HHHHHHHHHHHHH
Confidence 0112567888888 5 789999999999999999997433 3 33333 24443 2334555566666
Q ss_pred HHccccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCC--eEEEEecCCCCCeEEEEEE-ecCc
Q 015010 181 VLGKTLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAP--VSIAVDNSFSPSHTLIQIL-GQDH 257 (414)
Q Consensus 181 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~V~v~~~~~~~~t~v~V~-~~Dr 257 (414)
.+..... ..+. ...+. ....+ +.|.. ..+...|++. ..+.
T Consensus 408 ~f~~~~~-------~~~~--------------~~~~~------------~~~~~~v~gIa~----~~~~~~i~l~~~~~~ 450 (587)
T PRK07431 408 AFELEDS-------QIEI--------------NPTAS------------GQDEPEVRGVAL----DRNQAQLAIRNVPDR 450 (587)
T ss_pred HhccCCc-------cccc--------------Ccccc------------CCCCCcEEEEEc----cCCEEEEEECCCCCC
Confidence 6643110 0000 00000 00111 12222 2234455543 4678
Q ss_pred ccHHHHHHHHHHhCCceEEeEEEEEee-CCC--EEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCc
Q 015010 258 KGLIYDMMRTLKDYNTQVSYGRFFAKP-RGN--CEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDA 334 (414)
Q Consensus 258 pGLL~~i~~~L~~~~l~I~~A~I~t~t-~g~--~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 334 (414)
||+++++...|+++|++|.. +.++. .++ ...=.|.++. .+..++..+.+.|.+.+.. ..+.. ..+
T Consensus 451 ~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~-----~~~~~~~~~l~~l~~~~~~-~~i~~-~~~--- 518 (587)
T PRK07431 451 PGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPK-----EDREAAQKVLRELAKQLPG-AEVED-GPA--- 518 (587)
T ss_pred ccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcH-----HHHHHHHHHHHHHHHhcCC-ceEEE-eCC---
Confidence 99999999999999999996 54311 111 1222345431 1111223333333322211 00100 111
Q ss_pred eeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010 335 ELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 335 ~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
-..|.+.|. .+||++.++..+|.+.|++|...-
T Consensus 519 ----va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 519 ----IAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred ----eEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 126777776 789999999999999999996543
No 77
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0053 Score=45.69 Aligned_cols=62 Identities=24% Similarity=0.214 Sum_probs=42.9
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC----CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP----DGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~----~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
+.|.+ +|+||+|++|+.+++++|+||.+....... .+...-.|.+... +.+.++.+.+.|++
T Consensus 1 ~~v~~-~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~-----~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVEL-PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR-----GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEe-CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 35788 999999999999999999999988776532 3554444555431 34455555555543
No 78
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.09 E-value=0.0026 Score=61.84 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=50.8
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
..+.|++.| +||||+.++|+++|+++||||.+.+.++. .+|...-.+.+.-. +.+...+.|++.|++....
T Consensus 5 ~~~vitv~G-~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~----~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 5 QRYVLTLSC-PDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD----GLIFNLETLRADFAALAEE 76 (286)
T ss_pred ceEEEEEEC-CCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC----CCCCCHHHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999999882 22333333444321 1122367777777765543
No 79
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.06 E-value=0.024 Score=55.06 Aligned_cols=35 Identities=9% Similarity=0.119 Sum_probs=31.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
..+|+|.|+||||+.++++++|+++|+||.+..-.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~ 41 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF 41 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence 45799999999999999999999999999985554
No 80
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.06 E-value=0.0025 Score=45.74 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=40.2
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
|.+.. +|+||.+++++..|.++|+||.+..++...++..+-.|.+.+
T Consensus 1 ~~v~~-~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFV-ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEe-CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35678 999999999999999999999999998855577777777764
No 81
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.05 E-value=0.0039 Score=48.75 Aligned_cols=66 Identities=8% Similarity=0.106 Sum_probs=44.8
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
.+.+...|+||+|++|++.|+..|+||.+-.+..+...+..-=++.+. ..++...+++.+.|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-----~~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-----IQDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-----CCCHHHHHHHHHHHhCCc
Confidence 588999999999999999999999999986655322221222222222 124566777877776544
No 82
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.00 E-value=0.0011 Score=52.19 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=30.4
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
..+|+|.++||||+.+.++++|+++|+||.+ |+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--is 35 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--IS 35 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HH
Confidence 3589999999999999999999999999996 65
No 83
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0033 Score=59.21 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=48.7
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
..+.+++.| +|++|+.+.|++.|+++||||.++..++-. .|++.--....... .+...+.+++.+..+.
T Consensus 6 ~~~~LtvsC-pd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~----~~~~~~~l~~~f~~~a 75 (287)
T COG0788 6 DTFILTVSC-PDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEG----GPLDREALRAAFAPLA 75 (287)
T ss_pred cceEEEEec-CCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCC----CcccHHHHHHHHHHHH
Confidence 468999999 999999999999999999999999999743 34332222222211 2234566777776633
No 84
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.97 E-value=0.0054 Score=49.24 Aligned_cols=65 Identities=9% Similarity=0.208 Sum_probs=43.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
..+.+...|+||+|++|++.|+..|+||.+-.+..+..++ .--+.++-. ++...+++.+.|.+.+
T Consensus 9 ~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~-iSRmtivv~------~~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 9 VILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGD-KSRIWLLVN------DDQRLEQMISQIEKLE 73 (96)
T ss_pred EEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCC-ceEEEEEEc------CchHHHHHHHHHhCCc
Confidence 4599999999999999999999999999985554222221 111222221 1346777777776544
No 85
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0082 Score=44.67 Aligned_cols=63 Identities=6% Similarity=0.024 Sum_probs=40.4
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEee---CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKP---RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t---~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.|..+|+||+|++|+.+|+++|+||.+....... ..+...-.|.+.. .+.+.++.+.+.|++
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 35788999999999999999999999975544211 1223333333431 234455666666543
No 86
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=96.92 E-value=0.0045 Score=60.14 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=50.3
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
.+.|+|.| +||||+.++|+++|+++|+||.+.+.++. .++.+.-.+.+..+.+ ...+.|++.|++....
T Consensus 7 ~~vitv~G-~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-----~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 7 TFVLTLSC-PSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-----LDEDALRAGFAPIAAR 76 (286)
T ss_pred eEEEEEEe-CCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-----CCHHHHHHHHHHHHHH
Confidence 57899999 99999999999999999999999999853 3343333444443221 1256777777776543
No 87
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.92 E-value=0.0063 Score=46.88 Aligned_cols=65 Identities=6% Similarity=0.044 Sum_probs=43.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
.+.+...|+||+|.++++.|+..|+||.+-.+..+...+..-=++.+. | ++...++|.+.|.+.+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~----~~~~i~qi~kQL~KLi 68 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C----TENEATLLVSQLKKLI 68 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence 589999999999999999999999999985554211121111122222 2 3466777877776544
No 88
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0083 Score=45.60 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHH-HHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRK-RREETIHHLEA 180 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~-~~~~i~~~L~~ 180 (414)
.|.+.+ .||||++++|+.+|+++|.||......+..++.+--.|.+... +.+ .++++.+.|++
T Consensus 2 ~l~i~~-~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~-----~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLL-EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTS-----TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEe-cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcC-----chHHHHHHHHHHHhc
Confidence 578899 9999999999999999999999987765345654445666532 232 44555444443
No 89
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.87 E-value=0.0067 Score=46.32 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=40.9
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL 315 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L 315 (414)
.+.|.+.||+|+|++|+.++++.|+||.+..+. +.+ . -.|.+. +.+.+.++.+.++|
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~--i~l~i~-----v~~~~~L~~li~~L 58 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R--IYLNFP-----TIEFEKLQTLMPEI 58 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e--EEEEeE-----ecCHHHHHHHHHHH
Confidence 378999999999999999999999999987775 333 3 223333 22445566666655
No 90
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.87 E-value=0.0073 Score=46.11 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=32.1
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
.|.|.+ .||+|+|++|+.++++.|.||.+..+.+
T Consensus 2 ~l~I~~-~dr~Gll~dI~~~i~~~~~nI~~~~~~~ 35 (74)
T cd04877 2 RLEITC-EDRLGITQEVLDLLVEHNIDLRGIEIDP 35 (74)
T ss_pred EEEEEE-EccchHHHHHHHHHHHCCCceEEEEEec
Confidence 478999 9999999999999999999999999987
No 91
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=96.83 E-value=0.048 Score=53.03 Aligned_cols=66 Identities=14% Similarity=0.256 Sum_probs=45.4
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe--cCCCCCCChHHHHHHHHHHHH
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ--ADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~--~~g~~~~~~~~~~~l~~~L~~ 317 (414)
.+.+|+|.|+||||+.++|+++|+++|+||.+.+..+...++ .|.+. .+..+. +...+.|++.|++
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g----~F~m~i~v~~~~~--~~~~~~L~~~L~~ 72 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG----RFFMRVEFEGDGL--IFNLETLRADFAA 72 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC----eEEEEEEEEeCCC--CCCHHHHHHHHHH
Confidence 357899999999999999999999999999997776421443 35442 222111 1225667777654
No 92
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.78 E-value=0.012 Score=52.02 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=50.8
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
..|++.. .|+||.|++|+++|+..|+||.+-.+..+. .+..--+|.|.. ++...++|...|++..
T Consensus 2 ~~isI~v-en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLV-ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEE-cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhcCc
Confidence 3588899 999999999999999999999999888765 455555566654 3556677777777654
No 93
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.77 E-value=0.011 Score=47.45 Aligned_cols=68 Identities=15% Similarity=0.303 Sum_probs=48.7
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
+.+...|.+.. .|+||+|++|++.|+..|.||.+-.+.-+.+.. .--++.+. +++.+++|...|++..
T Consensus 5 ~~~~~tisvlv-~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-------~~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 5 THDNVILELTV-RNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-------DDQRLEQMISQIEKLE 73 (96)
T ss_pred CCCCEEEEEEE-ECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-------CchHHHHHHHHHhCCc
Confidence 34556799999 999999999999999999999998776545443 22223332 2346677777776654
No 94
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.75 E-value=0.013 Score=51.89 Aligned_cols=65 Identities=15% Similarity=0.242 Sum_probs=51.2
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
..|++.. .|+||.|++|++.|+.+|+||.+-.+..+. .+..--+|.|.. ++...+++...|++..
T Consensus 3 ~~IsV~v-eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLV-ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEE-cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC------CHHHHHHHHHHHhccc
Confidence 4688899 999999999999999999999998887655 465555566654 4556777877777655
No 95
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.71 E-value=0.016 Score=43.27 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=37.3
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCC-eEEEEEEEe
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDG-RVMDLFFIT 159 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g-~~~d~f~V~ 159 (414)
..+.+.. +|+||.|++++..|+++|+||.+.......++ ...-.+.+.
T Consensus 2 ~~~~v~~-~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDV-PDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4678899 99999999999999999999998887774322 333345554
No 96
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.66 E-value=0.017 Score=44.50 Aligned_cols=64 Identities=8% Similarity=0.140 Sum_probs=46.2
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAV 181 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~ 181 (414)
..|.+.. .|+||.|++++++|+..|+||.+-.+.-+.+....- ++.+.. ++...++|...|++.
T Consensus 3 ~tisi~v-~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~------~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVI-HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC------TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEE-ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC------CHHHHHHHHHHHhCC
Confidence 4688999 999999999999999999999998887434433322 233332 455667776666654
No 97
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.62 E-value=0.017 Score=42.96 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=33.8
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD 149 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~ 149 (414)
..+.|.. +|+||.|++++.+|+++|+||.+..++...+
T Consensus 2 ~ri~v~v-~d~pG~La~v~~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 2 KQLSVFL-ENKPGRLAAVTEILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEE-cCCCChHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4678899 9999999999999999999999999887433
No 98
>PRK08577 hypothetical protein; Provisional
Probab=96.62 E-value=0.033 Score=47.90 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=41.2
Q ss_pred CCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010 243 FSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296 (414)
Q Consensus 243 ~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~ 296 (414)
.....+.+.|.+.|+||+|++++.+|++++++|.+....+...++.+.-.|.+.
T Consensus 52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 445578899999999999999999999999999986665432244444455554
No 99
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.62 E-value=0.012 Score=43.40 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=37.1
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeC--ceeeEEEEEEE
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIH--DREWEVYRILL 389 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g--~~~~~~d~Fyv 389 (414)
+.+...|+||+|.+|+.+|++.|++|.+..+.. .+ +. ..-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~~~--~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR--KEKGGI--AYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec--cCCCCE--EEEEEEc
Confidence 678899999999999999999999999999877 44 44 5556666
No 100
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.59 E-value=0.019 Score=43.36 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=42.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC-CeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD-GRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~-g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.|.+.+ .|++|++++++.+|+++|+||......+..+ +.+.-.+.+.. .+...++++.+.|+
T Consensus 2 yl~i~~-~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTV-KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIE 64 (79)
T ss_pred EEEEEe-CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHH
Confidence 478889 9999999999999999999999988765334 44433333322 24444444444444
No 101
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.58 E-value=0.017 Score=51.80 Aligned_cols=66 Identities=11% Similarity=0.113 Sum_probs=45.5
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
.+.|.+.|+||+|+++++.|+.+|+||.+-.+..+...+...-++.+. + ++...++|.+.|.+.+.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHhH
Confidence 689999999999999999999999999986554322332332222332 1 12336788888877664
No 102
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.019 Score=43.52 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=42.3
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChH-HHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPS-KQDALCSRLR 316 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~-~~~~l~~~L~ 316 (414)
.+.|.+.|+||++++|+.+|+++|+||......+ ..++.+.=.|.+.. .+.+ .++.+.+.|+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v-----~~~~~~l~~l~~~L~ 64 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDT-----STMNGDIDELLEELR 64 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEc-----CchHHHHHHHHHHHh
Confidence 4789999999999999999999999999754431 12334444565542 2233 5566666653
No 103
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.55 E-value=0.016 Score=45.35 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=48.4
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeE-EEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRV-MDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~-~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
..|.+.. .|+||.|++|++.|+..|+||.+-.+..+.+..+ =-++.+.. .++...++|.+.|++..
T Consensus 3 ~~isvlV-eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~-----~d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQV-ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI-----QDDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEE-ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC-----CCHHHHHHHHHHHhCCc
Confidence 3588999 9999999999999999999999988877655433 22344431 14556677777776644
No 104
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.52 E-value=0.027 Score=41.68 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=43.9
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.|.+.+ .|+||++++++.+|+++|.||.+....+. .++.+.-.|.+.. .+ ...+.+.+.|+
T Consensus 2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLV-ENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEE-cCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence 367788 99999999999999999999999998774 3455544454543 13 44555555544
No 105
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.021 Score=43.08 Aligned_cols=63 Identities=8% Similarity=0.119 Sum_probs=41.8
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
.+.|.+.|+||++.+++..|+++|++|..........++.+.=.|.+. ..+.+..+.+.+.|+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~-----~~~~~~l~~~i~~L~ 64 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH-----ETSEAALNAALAEIE 64 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc-----cCCHHHHHHHHHHHH
Confidence 478889999999999999999999999986654221223333233332 223455566666654
No 106
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.48 E-value=0.024 Score=50.08 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
.+.|...|+||.|++|++.|+.+|+||.+-.+..+...+...=+|.++ + ++...++|.+.|.+.+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~----d~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G----DDKVLEQITKQLNKLVD 68 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcCcc
Confidence 588999999999999999999999999986665321122333334443 2 34567788888776554
No 107
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.025 Score=42.00 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=37.7
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
+|.+.+ +|++|.|++++..|+++++||.+....+..++...-.|.+.+
T Consensus 2 ~l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~ 49 (72)
T cd04874 2 ALSIIA-EDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG 49 (72)
T ss_pred eEEEEe-CCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence 578899 999999999999999999999988887633455443454543
No 108
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.43 E-value=0.011 Score=42.33 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=37.9
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEc
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDE 391 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d 391 (414)
+.+...|+||.|.+|+.+|.+.|+||.+..+... .+++ +.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~-~~~~--~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAET-RGEF--GILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEc-cCCc--EEEEEEECC
Confidence 3578899999999999999999999999998873 2366 666665543
No 109
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.42 E-value=0.028 Score=49.80 Aligned_cols=66 Identities=8% Similarity=0.077 Sum_probs=47.2
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
.+.|...|+||.|++|++.|+.+|+||.+-.+..+...+...=+|.++ | ++...+++.+.|.+.+.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~----~~~~i~qi~kQl~KLid 69 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G----DEQVIEQITKQLNKLID 69 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcccc
Confidence 588999999999999999999999999986655321122333334443 2 35667888888876554
No 110
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.41 E-value=0.024 Score=43.73 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=47.1
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEE-EEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDL-FFITDTRELLHTRKRREETIHHLEAV 181 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~~~~~~~~~~~~i~~~L~~~ 181 (414)
..|.+.. .|+||.|++++++|+..|+||.+-.+.-+.++...-+ +.| + ++...+.|.+.|.+.
T Consensus 4 ~~lsi~v-~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKA-RFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEE-ECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhcC
Confidence 5689999 9999999999999999999999999877666543333 444 3 233456676666654
No 111
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.019 Score=54.23 Aligned_cols=36 Identities=11% Similarity=0.225 Sum_probs=33.3
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
..+++++.|+|+||+.+.|++.|+.+|+||.++.=+
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf 41 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF 41 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc
Confidence 457899999999999999999999999999998776
No 112
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.32 E-value=0.041 Score=40.61 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=40.8
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
+.+.+.|+||+|.+++.+|++++++|.+....+...++.+.=.|.+.. .+ +..+.+.+.|+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~ 63 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN 63 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence 678899999999999999999999999866552112333333334431 22 44556655554
No 113
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.29 E-value=0.029 Score=43.27 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=46.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
..+.+...++||.|.++++.|...|+||.+-.+..+.+++...=++.+. ++...++|.+.|.+.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhcCc
Confidence 3589999999999999999999999999986665332443333333442 2345677877776544
No 114
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.28 E-value=0.048 Score=42.16 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=43.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG-NCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g-~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.+.+..+|+||.|+++...|+++|+||.+- .+.... ....=.|+++-++. .. .+..+.+.+.|+.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i--~s~p~~~~~~~~~f~vd~~~~-~~-~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKI--ESRPSKGGLWEYVFFIDFEGH-IE-DPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEE--EEEEcCCCCceEEEEEEEECC-CC-CHHHHHHHHHHHH
Confidence 3467778999999999999999999999974 433332 23334567764444 22 3444555555554
No 115
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.27 E-value=0.049 Score=40.59 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=30.4
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
..+.+..+|+||.|++++..|+++|+||.+....
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~ 35 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL 35 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence 3588899999999999999999999999976655
No 116
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.27 E-value=0.034 Score=49.90 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=48.3
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
..|.+.+ .|+||++++|+++|+..|+||.+-.+..+.+.. .--.+.+.. ++...++|.++|++...
T Consensus 3 ~~isvlv-~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~------~~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLV-EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG------DDRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEE-eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC------CHHHHHHHHHHHHHHhH
Confidence 4689999 999999999999999999999998887644433 222233322 23346788888877664
No 117
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.20 E-value=0.061 Score=41.59 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=46.2
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
+.+.+.. +|+||.|+++..+|+++|+||.+-......++...-.|+|.-... .+.+....+-+.|+.
T Consensus 2 ~sl~~~~-~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTL-PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHHHHHHH
Confidence 4577788 999999999999999999999988776654544445677764321 233344444444444
No 118
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.19 E-value=0.047 Score=43.56 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=49.7
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
....|.+.+..+|+||-|+++...|+.+|+|+.+ |.+...... -.=.|+|+-+|. .+ ...+.+.+.|.+.|.
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~--IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTH--IESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG 83 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence 3444677777799999999999999999999995 876543322 334577875564 23 445555566666553
No 119
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.15 E-value=0.023 Score=41.84 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=38.6
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEe
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFIT 159 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~ 159 (414)
+.+.+ .|++|++++++.+|+++|+||.+..+.... ++...-.|.+.
T Consensus 2 l~v~~-~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~ 48 (71)
T cd04879 2 LLIVH-KDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD 48 (71)
T ss_pred EEEEe-cCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence 57789 999999999999999999999999988743 36666667663
No 120
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.14 E-value=0.022 Score=42.39 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=33.6
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.+.|...|+||.|++|+.+|.+.|+||.+.-+.. .+++
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~--~~~~ 40 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIAD--TSEF 40 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEe--cCCC
Confidence 5788899999999999999999999999988876 5554
No 121
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.09 E-value=0.033 Score=41.75 Aligned_cols=47 Identities=23% Similarity=0.434 Sum_probs=37.9
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEec
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITD 160 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~ 160 (414)
+.+.. +|+||.+++++..|+++|+||.+...... .++...-+|.+..
T Consensus 2 l~v~~-~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRN-TDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEe-CCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 45678 99999999999999999999998877654 3566666676654
No 122
>PRK04435 hypothetical protein; Provisional
Probab=96.08 E-value=0.064 Score=46.89 Aligned_cols=53 Identities=25% Similarity=0.283 Sum_probs=43.4
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
....+.|.+.. .|+||+|++|+.+|+++|+||..-...+..+|.+--.|.+..
T Consensus 66 ~~r~vtL~i~l-~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 66 KGKIITLSLLL-EDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred CCcEEEEEEEE-ecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 44588999999 999999999999999999999998876645676555566654
No 123
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.06 E-value=0.056 Score=39.84 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=36.4
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEec
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFITD 160 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~~ 160 (414)
|.+.+ .|+||.+++++..|+++|+||.+...... .++...-.+.+.+
T Consensus 2 l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~ 49 (71)
T cd04903 2 LIVVH-KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ 49 (71)
T ss_pred EEEEe-CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence 56788 99999999999999999999999887763 2455443454443
No 124
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.04 E-value=0.047 Score=41.24 Aligned_cols=46 Identities=26% Similarity=0.400 Sum_probs=34.8
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC--CCCeEEEEEEEe
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT--PDGRVMDLFFIT 159 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~--~~g~~~d~f~V~ 159 (414)
+.+.. +|+||-|++++..|+++|.||.+...... ..+.-...+.+.
T Consensus 2 l~v~~-~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~ 49 (72)
T cd04884 2 FTFLL-EDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVT 49 (72)
T ss_pred EEEEe-cCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEE
Confidence 57788 99999999999999999999998876653 233333344444
No 125
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.03 E-value=0.038 Score=40.36 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=35.3
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEE
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFI 158 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V 158 (414)
+.+.. +|+||-|++++.+|+++|+||.+...+... .+...-.|.+
T Consensus 2 i~v~~-~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEV-PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEe-CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 67788 999999999999999999999988776633 2454434444
No 126
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.03 E-value=0.044 Score=40.43 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.7
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
+.+...||||.|.+|+..|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 577899999999999999999999999887654
No 127
>PRK08577 hypothetical protein; Provisional
Probab=96.00 E-value=0.077 Score=45.64 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=40.5
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEe
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFIT 159 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~ 159 (414)
..+.|.+.+ .|+||+|++|+.+|+++++||.+....+.. ++.+.-.|.+.
T Consensus 55 ~~~~I~V~~-~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 55 KLVEIELVV-EDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred cEEEEEEEE-cCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 488999999 999999999999999999999998887754 44444344443
No 128
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.97 E-value=0.036 Score=44.25 Aligned_cols=66 Identities=11% Similarity=0.065 Sum_probs=45.3
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCc--hHHHHHHHHHHc
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPR--NKIEDLVRKILM 411 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~--~~~~~~i~~~L~ 411 (414)
.|-+...|+||-|+++-..|+++|+|+.+-...- ...+.| .+.||| |.+|. .+. .+.++.+++.|.
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP--~~~~~~-~Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~ 83 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRP--SRLNKD-EYEFFI-NLDKK-SAPALDPIIKSLRNDIG 83 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCCc-eEEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence 5556668999999999999999999999654433 544444 468988 44565 222 234566666554
No 129
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.86 E-value=0.089 Score=37.76 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=36.0
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEe
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT 159 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 159 (414)
|.+.+ .|+||.+++++..|.+++++|....+....++...-.|.+.
T Consensus 1 l~v~~-~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEA-IDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEE-eccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 45778 99999999999999999999999988874335443344444
No 130
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.80 E-value=0.098 Score=35.57 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=31.3
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP 148 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~ 148 (414)
|.+.+ +|++|++++++.+|..+|++|.........
T Consensus 1 i~i~~-~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSG-PDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEe-cCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788 999999999999999999999999987743
No 131
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.78 E-value=0.012 Score=43.81 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=39.6
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK 408 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~ 408 (414)
+-+.+.||||+|.+|+.+|.+.|++|.+....+ .++. +.-.|-+. ... .+..+++|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~--a~~~~~~~---~~~--l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEI--GYVVIDID---SEV--SEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCE--EEEEEEcC---CCC--CHHHHHHHHc
Confidence 346889999999999999999999998876655 4444 44344432 222 2235666664
No 132
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.74 E-value=0.045 Score=41.69 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=34.9
Q ss_pred EEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCC
Q 015010 343 ELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADG 394 (414)
Q Consensus 343 ev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g 394 (414)
-+...|+||-|++|..+|+++|+||.+-...- ..+.. ....|||. -+|
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp-~~~~~--~~~~f~id-~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRP-SRKGL--WEYEFFVD-FEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeee-cCCCC--ceEEEEEE-EEC
Confidence 34557999999999999999999999763322 23334 56688884 445
No 133
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=95.72 E-value=0.045 Score=41.00 Aligned_cols=45 Identities=18% Similarity=0.199 Sum_probs=34.0
Q ss_pred EEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEE
Q 015010 343 ELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILL 389 (414)
Q Consensus 343 ev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv 389 (414)
-+...|+||.+++|+..|+++|++|.+........+++ +.-+|-+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~--~~~~i~v 47 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGE--ALMVLSV 47 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCE--EEEEEEe
Confidence 46789999999999999999999998887755223445 4444444
No 134
>PRK07431 aspartate kinase; Provisional
Probab=95.58 E-value=2 Score=46.10 Aligned_cols=189 Identities=14% Similarity=0.136 Sum_probs=106.6
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccccc
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISCE 190 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~ 190 (414)
..+++..-.+++|++++|...|+++|+||.--.......+..--.|.|.. ...+...+.|++ +..
T Consensus 271 a~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~------ 335 (587)
T PRK07431 271 AKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAP------ 335 (587)
T ss_pred eEEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHH------
Confidence 34555443789999999999999999999865443322322222366643 122222222332 111
Q ss_pred ccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHHHHHHH
Q 015010 191 IELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIYDMMRT 267 (414)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~~i~~~ 267 (414)
+. .. ..+.+. .+...|.|.+. ++||+++++..+
T Consensus 336 ------~~--------------~~--------------------~~i~~~----~~~a~IsvvG~gm~~~~gi~~ki~~a 371 (587)
T PRK07431 336 ------AL--------------GG--------------------AEVLVE----TNVAKLSISGAGMMGRPGIAAKMFDT 371 (587)
T ss_pred ------Hc--------------CC--------------------CcEEEe----CCeEEEEEECCCcccCccHHHHHHHH
Confidence 00 00 012221 24567888875 789999999999
Q ss_pred HHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc-eeeecC--CCC----ceeeee-
Q 015010 268 LKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR-VAVVNR--GPD----AELLVA- 339 (414)
Q Consensus 268 L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~-~~~~~~--~~~----~~v~~~- 339 (414)
|++.+++|.. |.+ .. ..=.|.+. ++..++..+.|.+.+..... ..+.+. +.+ +-|...
T Consensus 372 L~~~~I~i~~--i~s--Se--~~Is~vv~--------~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~~~v~gIa~~~ 437 (587)
T PRK07431 372 LAEAGINIRM--IST--SE--VKVSCVID--------AEDGDKALRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDR 437 (587)
T ss_pred HHHCCCcEEE--EEc--CC--CEEEEEEc--------HHHHHHHHHHHHHHhccCCcccccCccccCCCCCcEEEEEccC
Confidence 9999999985 432 11 22234443 23345555666666643311 111111 000 111111
Q ss_pred --eeEEEE-eCCccchHHHHHHHHHhCCceEEEEEE
Q 015010 340 --NPVELS-GRGRPLVFYDITLALKILSISIFSVEI 372 (414)
Q Consensus 340 --~~lev~-~~DRpGLL~dIt~~l~~~gl~I~~A~I 372 (414)
..|.|. ..++||++++|...|.++|++|..--.
T Consensus 438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~ 473 (587)
T PRK07431 438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQ 473 (587)
T ss_pred CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEe
Confidence 133333 457899999999999999999987643
No 135
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.58 E-value=0.056 Score=39.45 Aligned_cols=33 Identities=15% Similarity=-0.017 Sum_probs=29.7
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
+.+.-.||||-|++++.+|.++|+||.+.....
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~ 34 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFV 34 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEc
Confidence 567889999999999999999999998887655
No 136
>PRK04435 hypothetical protein; Provisional
Probab=95.52 E-value=0.13 Score=44.88 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=48.3
Q ss_pred EecCCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCCh-HHHHHHHHHH
Q 015010 239 VDNSFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDP-SKQDALCSRL 315 (414)
Q Consensus 239 v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~-~~~~~l~~~L 315 (414)
|..........+.+...|+||+|++|..+|+++|+||..-.... ..++.+.=.|.+.. .+. ..++.|.+.|
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVev-----s~~~~~L~~Li~~L 132 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDT-----SSMEGDIDELLEKL 132 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEe-----CChHHHHHHHHHHH
Confidence 44445667788999999999999999999999999999643321 12334555566642 122 2456666655
No 137
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.51 E-value=0.05 Score=41.73 Aligned_cols=51 Identities=14% Similarity=0.166 Sum_probs=37.1
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
+-+..+|+||-|+++-..|+++|+|+.+-...- .....| .+.||| |-+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP--~~~~~~-~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRK--SKRRSS-EFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEecc--CCCCCc-eEEEEE-EEEcCH
Confidence 445558999999999999999999999554433 444444 568888 445654
No 138
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.46 E-value=0.14 Score=38.89 Aligned_cols=64 Identities=9% Similarity=0.172 Sum_probs=42.6
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCC-EEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGN-CEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~-~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.+..+|+||-|+++...|+++|+||.+ |.+..... ...=.|+++-+|.. ++...+.+.+.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~--I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTK--IESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEE--EEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence 3455689999999999999999999997 66543322 34445667644431 23455566566654
No 139
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.45 E-value=0.13 Score=36.94 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=29.0
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
+.|.+.|+||.+.+++..|.+++++|.+..+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~ 32 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR 32 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE
Confidence 35779999999999999999999999987776
No 140
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.42 E-value=0.17 Score=37.81 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=37.4
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC-CCCeEEEEEEEe
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT-PDGRVMDLFFIT 159 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~-~~g~~~d~f~V~ 159 (414)
+.+.+.. +|+||.+++++.+|+++|+||.+....-. .++...-.|.+.
T Consensus 2 ~~~~v~~-~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRV-PDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 4688899 99999999999999999999998765442 234555456654
No 141
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.40 E-value=0.081 Score=39.91 Aligned_cols=32 Identities=19% Similarity=0.286 Sum_probs=28.2
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
+.+.-+|+||-|++++..|+++|.||.+-...
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~ 33 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA 33 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence 56788999999999999999999999975443
No 142
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.40 E-value=0.025 Score=42.03 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=35.8
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
+.+.+ .|+||++++++.+|++.|+||......+ .++.+.-.|.+..
T Consensus 2 ~~~~~-~d~~g~l~~i~~~l~~~~~nI~~~~~~~-~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIH-KNVPGVLGQINTILAEHNINIAAQYLQT-RGEIGYVVIDIDS 47 (69)
T ss_pred EEEEe-cCCCcHHHHHHHHHHHcCCCHHHHhccC-CCCEEEEEEEcCC
Confidence 56788 9999999999999999999998876655 3466555555543
No 143
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.18 E-value=0.22 Score=37.24 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=30.2
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
+.+.+..+|+||.|.+++..|+++|+||.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 4688899999999999999999999999976544
No 144
>PRK11899 prephenate dehydratase; Provisional
Probab=95.17 E-value=0.077 Score=51.37 Aligned_cols=55 Identities=13% Similarity=0.209 Sum_probs=41.1
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+.|-+...|+||.|++|-.+|++.|||+.+ |..+..+.+.| .+.||| |.+|..-+
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~-~Y~F~i-d~eg~~~d 249 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFT-ATQFYA-DIEGHPED 249 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCc-eEEEEE-EEECCCCC
Confidence 345555679999999999999999999985 54443665555 668998 66676443
No 145
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.15 E-value=0.075 Score=40.61 Aligned_cols=49 Identities=6% Similarity=0.027 Sum_probs=35.9
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADG 394 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g 394 (414)
+-+...|+||-|++|-..|+++|+|+.+ |.+++...+.| .+.||| |-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~-~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGS-EYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCc-eEEEEE-EEEc
Confidence 3445588999999999999999999995 54433444443 468888 4455
No 146
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.10 E-value=0.13 Score=39.30 Aligned_cols=48 Identities=6% Similarity=0.207 Sum_probs=35.9
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCC
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADG 299 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g 299 (414)
+.+..+|+||-|+++...|+.+|+|+.+ |.+...... ..=.|+++-+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~--IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTH--IESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEE--EECCCCCCCCceEEEEEEEEc
Confidence 4555689999999999999999999995 876543322 33456777555
No 147
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.08 E-value=0.16 Score=34.44 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=30.3
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
|.+.+.|+||++++|+.+|++.|++|.......
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~ 33 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT 33 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence 467889999999999999999999999998876
No 148
>PRK07334 threonine dehydratase; Provisional
Probab=95.05 E-value=0.16 Score=51.88 Aligned_cols=65 Identities=25% Similarity=0.224 Sum_probs=49.7
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeC----CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTT----PDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~----~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.+.|.|.+ .||+|+|++|+.+|++.++||.+....+. .++.+.-.|.|.- .+.+.++++..+|++
T Consensus 326 ~v~l~I~~-~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-----~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDI-RDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-----RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 57999999 99999999999999999999999998763 3565444455532 245566777666665
No 149
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.91 E-value=0.12 Score=38.21 Aligned_cols=58 Identities=7% Similarity=0.113 Sum_probs=37.5
Q ss_pred CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 256 DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
|+||.|.+|++.|...|+||.+-.+..+..++...=++.+. |. +...+.|.+.|.+.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~----~~~i~~l~~Ql~Kli 58 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GD----DREIEQLVKQLEKLI 58 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-----CCHHHHHHHHHHCST
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eC----chhHHHHHHHHhccC
Confidence 78999999999999999999987776432343333333333 21 234667777776544
No 150
>PRK07334 threonine dehydratase; Provisional
Probab=94.86 E-value=0.17 Score=51.78 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=47.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEee---CCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKP---RGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t---~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.|.|.+.||||+|.+|+.+|++.++||.+....+.. .++.+.-.|.+. +.+.++++++.+.|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999987765320 233444445554 3355677778777755
No 151
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.83 E-value=0.16 Score=37.49 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=30.9
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
.+.+...|+||.|++|+..|.+++++|.+....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~ 35 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFI 35 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEec
Confidence 4678899999999999999999999999887766
No 152
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.75 E-value=0.22 Score=54.50 Aligned_cols=65 Identities=12% Similarity=0.154 Sum_probs=48.6
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
...|.|.+.||+|||.+|+.+++..++||.+.++.+...++.+.-.|.+. +.+.+.+.++...|+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~L~ 730 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGKLN 730 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 35889999999999999999999999999988776432134555556664 344566677766664
No 153
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.72 E-value=0.096 Score=38.80 Aligned_cols=56 Identities=20% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE-EEEEecCCCCCCCHHHHHHHHHHHHHH
Q 015010 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD-LFFITDTRELLHTRKRREETIHHLEAV 181 (414)
Q Consensus 120 Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d-~f~V~~~~~~~~~~~~~~~i~~~L~~~ 181 (414)
|+||.|.+|+++|...|+||.+-.+..+.++...- .+.|.+ ++...+.|...|++.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~------~~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG------DDREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee------CchhHHHHHHHHhcc
Confidence 78999999999999999999999998755554433 344433 223456666666553
No 154
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.40 E-value=0.28 Score=37.55 Aligned_cols=49 Identities=4% Similarity=0.044 Sum_probs=36.3
Q ss_pred EEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCC
Q 015010 250 IQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGK 300 (414)
Q Consensus 250 v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~ 300 (414)
+.+..+|+||-|+++...|+.+|+|+.+ |.+...... ..=.|+++-+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~--IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVH--IESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEE--EEeccCCCCCceEEEEEEEEcC
Confidence 4555689999999999999999999995 876543322 334567775554
No 155
>PRK06635 aspartate kinase; Reviewed
Probab=93.97 E-value=6.1 Score=40.25 Aligned_cols=110 Identities=16% Similarity=0.302 Sum_probs=67.8
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccccc
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLIS 188 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~ 188 (414)
+...|++.+-.+++|.++++..+|++.|+||.--......+|..--.|.|.. +..++..+.|.+ +...
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~--------~~~~~a~~~L~~-~~~~--- 328 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR--------DDLEKALELLEE-VKDE--- 328 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH--------HHHHHHHHHHHH-HHHH---
Confidence 3455666655789999999999999999999964433322223333455532 222333333333 1100
Q ss_pred ccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEe---cCcccHHHHHH
Q 015010 189 CEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG---QDHKGLIYDMM 265 (414)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~DrpGLL~~i~ 265 (414)
. ....+.+ ..+.+.+.|.+ +++||.++++.
T Consensus 329 ---------~----------------------------------~~~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~ 361 (404)
T PRK06635 329 ---------I----------------------------------GAESVTY----DDDIAKVSVVGVGMRSHPGVAAKMF 361 (404)
T ss_pred ---------c----------------------------------CcceEEE----cCCeEEEEEECCCCCCCchHHHHHH
Confidence 0 0001211 12345677766 68999999999
Q ss_pred HHHHhCCceEEe
Q 015010 266 RTLKDYNTQVSY 277 (414)
Q Consensus 266 ~~L~~~~l~I~~ 277 (414)
.+|++.|+||..
T Consensus 362 ~~La~~~Ini~~ 373 (404)
T PRK06635 362 EALAEEGINIQM 373 (404)
T ss_pred HHHHHCCCCEEE
Confidence 999999999986
No 156
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.97 E-value=0.18 Score=44.30 Aligned_cols=47 Identities=13% Similarity=0.348 Sum_probs=39.4
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM 295 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v 295 (414)
-+.+.+.++||.|.++++.++++|.||.+|+-+...+|..+.-+|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 36788999999999999999999999999999876667656555554
No 157
>PRK11899 prephenate dehydratase; Provisional
Probab=93.63 E-value=0.43 Score=46.22 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=41.8
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK 301 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~ 301 (414)
-|.+-+..+|+||.|+++..+|+++|+|+.. |.+...+.. ..=+||++.+|..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtk--IeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTK--LESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeee--EEeeecCCCCceEEEEEEEECCC
Confidence 4667777799999999999999999999994 887655434 4446788877753
No 158
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.61 E-value=0.37 Score=52.74 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=49.0
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.+.|.|.+ .||+|||++|+.+++..++||.+..+.+.. ++.+.-.|.|.- .+...++++...|+.
T Consensus 666 ~v~I~I~~-~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-----~~~~~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTA-NDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-----YNLQVLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEE-cCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-----CCHHHHHHHHHHHhc
Confidence 45899999 999999999999999999999999998743 566554555542 245566666555553
No 159
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.59 E-value=0.19 Score=41.99 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=38.1
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
.+-+..+|+||-|++|-..|+++|+|+.+ |.+++.+.+.| .+.||| |.+|..
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~-eY~FfI-dieg~~ 94 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGG-DLEVLV-RCEVHR 94 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCc-eEEEEE-EEEeCH
Confidence 55556689999999999999999999995 54443655544 367888 445543
No 160
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.35 E-value=0.53 Score=51.41 Aligned_cols=64 Identities=11% Similarity=0.160 Sum_probs=47.5
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
.+.|.|.+.||+|+|.+|+.+++..++||.+..+.+. .++.+.-.|.+. +.+.+.+..|...|+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEK-DGRVYSAFIRLT-----ARDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 3588999999999999999999999999999887532 333444455554 334566677766664
No 161
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.31 E-value=0.43 Score=52.12 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=48.0
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.+.|.|.+ .||+|+|++|+.+++..++||.+....+..++.+.-.|.+.- .+.+.+++|...|+
T Consensus 626 ~v~i~I~~-~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~i~~~Lr 689 (702)
T PRK11092 626 IAEIKVEM-FNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-----RDRVHLANIMRKIR 689 (702)
T ss_pred EEEEEEEE-eCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence 45899999 999999999999999999999999988744455544455542 23455566655544
No 162
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.20 E-value=0.27 Score=43.30 Aligned_cols=49 Identities=20% Similarity=0.247 Sum_probs=40.0
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCe-EEEEEEEec
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGR-VMDLFFITD 160 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~-~~d~f~V~~ 160 (414)
.-|.+.+ .++||.|++++++++++|.||..|+.+.-.+|. +.--|.+.+
T Consensus 3 ~~lsi~~-enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 3 RGLSIIA-ENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred ceeEEEe-ecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 3577889 999999999999999999999999999977774 443344543
No 163
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.10 E-value=0.58 Score=39.11 Aligned_cols=52 Identities=2% Similarity=0.105 Sum_probs=38.4
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEE-EEEEEEecCCC
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCE-VDLFIMQADGK 300 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~-~D~F~v~~~g~ 300 (414)
.|.+.+..+|+||-|+++...|+.+|+|+.+ |.+......- .=.|+|+-+|.
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~--IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHH--LESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEE--EECCcCCCCCceEEEEEEEEeC
Confidence 3566667799999999999999999999995 8765543332 23467775554
No 164
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.75 E-value=0.087 Score=41.40 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=44.1
Q ss_pred EEEEEEecC-CcchHHHHHHHHHhCCCeEEEEEEEeCC--------CCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 112 LLKFWCFQD-RKGLLHDVTEVLCELELTIKRVKVSTTP--------DGRVMDLFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 112 ~i~v~~~~D-r~GLl~~i~~~L~~~glnI~~A~i~T~~--------~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
.|++.+ +| +.|++++++++|+++|+||.+-+-.+.. .....-.|.|..+. ...+.+++.|.+.-
T Consensus 1 ivtvlg-~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~------~~~~~lr~~L~~la 73 (84)
T cd04871 1 IVTLLG-RPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP------ADLEALRAALLELA 73 (84)
T ss_pred CEEEEc-CcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC------CCHHHHHHHHHHHh
Confidence 378999 99 9999999999999999999865443211 12334457777532 23466777776544
Q ss_pred c
Q 015010 183 G 183 (414)
Q Consensus 183 ~ 183 (414)
.
T Consensus 74 ~ 74 (84)
T cd04871 74 S 74 (84)
T ss_pred c
Confidence 3
No 165
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.65 E-value=0.98 Score=33.61 Aligned_cols=60 Identities=22% Similarity=0.160 Sum_probs=37.9
Q ss_pred EEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 114 KFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 114 ~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.+.- +||||=|.+++.+++. |.||..-+-.....+.+.-.+.+.. .+++..+++.+.|++
T Consensus 2 ~v~i-pdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTF-PERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-----PDREDLAELKERLEA 61 (68)
T ss_pred EEEC-CCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 4667 9999999999999999 9999986554322222221222221 245555666555554
No 166
>PRK06635 aspartate kinase; Reviewed
Probab=92.62 E-value=1.7 Score=44.24 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=62.8
Q ss_pred eEEEEEE-ecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 015010 247 HTLIQIL-GQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG-NCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR 324 (414)
Q Consensus 247 ~t~v~V~-~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g-~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 324 (414)
...|+|. -.++||+++++..+|++.|++|.. +.++... +...=.|.++ .+..+...+.|.+. .....
T Consensus 262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~~ 330 (404)
T PRK06635 262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEIG 330 (404)
T ss_pred eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHcC
Confidence 3444444 367899999999999999999995 4422111 1233344443 12223333444331 11111
Q ss_pred ee-e-ecCCCCceeeeeeeEEEEe---CCccchHHHHHHHHHhCCceEEEE
Q 015010 325 VA-V-VNRGPDAELLVANPVELSG---RGRPLVFYDITLALKILSISIFSV 370 (414)
Q Consensus 325 ~~-~-~~~~~~~~v~~~~~lev~~---~DRpGLL~dIt~~l~~~gl~I~~A 370 (414)
+. + ..+. -..+.|.+ .++||++++|.++|.+.|++|...
T Consensus 331 ~~~i~~~~~-------ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 331 AESVTYDDD-------IAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred cceEEEcCC-------eEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 10 0 0011 12667765 589999999999999999999874
No 167
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.37 E-value=0.76 Score=34.07 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=34.4
Q ss_pred CCeEEEEEEec----CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010 245 PSHTLIQILGQ----DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296 (414)
Q Consensus 245 ~~~t~v~V~~~----DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~ 296 (414)
.++..|+|.++ |.||++++++..|++.|++|.. |+ + ..-+.|.|.
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~--is-S----~~~~~ilV~ 52 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM--IS-S----EISISILVK 52 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE--EE-E----SSEEEEEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE--EE-E----eeeEEEEEe
Confidence 35678888888 8999999999999999999995 54 2 234666664
No 168
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.27 E-value=0.94 Score=49.48 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=46.7
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
.+.|.|.+.||+|+|.+|+.+++..++||.+.++.+. .++.+.-.|.+. +.+...+..|...|+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 4588999999999999999999999999998777632 233444445554 334556666666654
No 169
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.06 E-value=0.79 Score=50.05 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=47.7
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.+.|.|.+ .||+|+|++|+.+++..++||.+..+.+..++.+.-.|.|.- .+...+..|...|+
T Consensus 610 ~v~I~I~~-~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-----~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEA-VDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-----KNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEE-ecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence 56899999 999999999999999999999999998854565544454432 23455555555444
No 170
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=91.92 E-value=2.8 Score=42.65 Aligned_cols=104 Identities=20% Similarity=0.231 Sum_probs=64.5
Q ss_pred CeEEEEEE---ecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC-
Q 015010 246 SHTLIQIL---GQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR- 321 (414)
Q Consensus 246 ~~t~v~V~---~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~- 321 (414)
+...|.|. -.++||++.++..+|.+.+++|.. +.+ +..+ ..=.|.+. .+..++..+.|.+.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~-~~Is~~V~--------~~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSE-TSISLTVD--------ETDADEAVRALKDQSGAA 326 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCC-ceEEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence 45677777 467899999999999999999984 432 1121 11234553 12233344444443311
Q ss_pred C-cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010 322 P-LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFS 369 (414)
Q Consensus 322 ~-~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~ 369 (414)
. ..+. ..++ -..|.|.+. ++||+++++..+|.+.|++|..
T Consensus 327 ~~~~i~-~~~~-------~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 327 GLDRVE-VEEG-------LAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CCceEE-EeCC-------eEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 1 0010 0111 125666665 7899999999999999999985
No 171
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.81 E-value=0.85 Score=44.00 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=43.2
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCC
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKK 301 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~ 301 (414)
..|.+.+..+|+||-|+++...|+.+|+|.. +|.+...... ..-+||++-+|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence 4788888999999999999999999999998 5886544433 4556788866664
No 172
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=91.54 E-value=0.64 Score=47.21 Aligned_cols=55 Identities=15% Similarity=0.250 Sum_probs=40.2
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+.+-+...|+||.|+++-..|+..|||+.+ |..++.+.+.| .+.||| |.+|..-+
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~-~Y~Ffi-d~eg~~~d 352 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPW-EEMFYL-DVQANLRS 352 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCc-eEEEEE-EEeCCCCC
Confidence 345566679999999999999999999985 54433555544 568988 66675433
No 173
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.14 E-value=0.85 Score=42.21 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=41.9
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010 245 PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296 (414)
Q Consensus 245 ~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~ 296 (414)
+....+.+.-.|+||.+..++..|.++++||..-++.....|+.+.-+..++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 3445677888999999999999999999999998888655666666655554
No 174
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.00 E-value=1.4 Score=32.74 Aligned_cols=59 Identities=15% Similarity=0.248 Sum_probs=38.2
Q ss_pred EEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEE-EecCCCCCCChHHHHHHHHHHHH
Q 015010 251 QILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI-MQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 251 ~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~-v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
.|.-+||||=|.+++..++. +.||..-+-. ..+.....+++ +. ..+++..+.+.+.|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~ie-----~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGIQ-----VPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 56779999999999999999 9999864332 22222333333 33 1234566777776654
No 175
>PRK06291 aspartate kinase; Provisional
Probab=90.99 E-value=4.6 Score=42.09 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=67.1
Q ss_pred CeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 246 SHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 246 ~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+.+.|.|.+. +.||+++++..+|+++|++|.. |... .. ...=.|.++. +..+...+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~-ss-e~sIsf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQG-SS-ESNISLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEec-CC-CceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 4567788764 6899999999999999999985 4311 11 1222345541 12233334444444321
Q ss_pred --cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEEEec
Q 015010 323 --LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 323 --~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
..+... .. -..|.|.|. +++|++.++..+|.+.|++|..---++
T Consensus 388 ~~~~i~~~-~~-------~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 388 LVRDVTFD-KD-------VCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred cCcceEEe-CC-------EEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 001000 01 126777775 699999999999999999998544333
No 176
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.96 E-value=1.2 Score=41.20 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=41.9
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCC-CCeEEEEEEEec
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTP-DGRVMDLFFITD 160 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~-~g~~~d~f~V~~ 160 (414)
+....|.+.- .||||.+.+|+.+|.++|+||...++.... +|.++-+..|..
T Consensus 146 ~~g~~L~~~~-~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 146 GEHPAILLEH-NDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred CCccEEEEEe-CCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 3456677788 999999999999999999999999998743 566776666643
No 177
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=90.75 E-value=0.96 Score=43.64 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=41.8
Q ss_pred eeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 339 ANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 339 ~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
.|.|-+...|+||-|+++-.+|+..|||+.+ |..++.+.+.| .+.||| |-+|..=+
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTk--IESRP~k~~~~-~Y~F~i-D~eg~~~~ 249 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTK--IESRPLKTGLG-EYLFFI-DIEGHIDD 249 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceee--EeecccCCCCe-eEEEEE-EEecCcCc
Confidence 3567777779999999999999999999985 54443665554 447888 66676544
No 178
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.74 E-value=1.5 Score=47.57 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=48.3
Q ss_pred EEEecCC-CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEE-EEEecCCCCCCChHHHHHHHHH
Q 015010 237 IAVDNSF-SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDL-FIMQADGKKIVDPSKQDALCSR 314 (414)
Q Consensus 237 V~v~~~~-~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~-F~v~~~g~~~~~~~~~~~l~~~ 314 (414)
|.++... ..-.+.|.|.+.||+|||.+|+.+|+..+.||.+.... +.......+ |.+. +.+...+..|...
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~--~~~~~~~~~~~~i~-----v~n~~~L~~i~~~ 688 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR--SDKDQFATMQFTIE-----VKNLNHLGRVLAR 688 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc--ccCCceEEEEEEEE-----ECcHHHHHHHHHH
Confidence 4455443 33457899999999999999999999999999986655 333333333 3333 3344455666555
Q ss_pred H
Q 015010 315 L 315 (414)
Q Consensus 315 L 315 (414)
|
T Consensus 689 l 689 (701)
T COG0317 689 L 689 (701)
T ss_pred H
Confidence 5
No 179
>PRK06382 threonine dehydratase; Provisional
Probab=90.66 E-value=1.8 Score=44.17 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE----eCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS----TTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~----T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
....+.++|.- +|+||-|++++.+|.++|+||.+-... ....+...-+|.|... +++..++|.+.|++
T Consensus 327 ~~~~~rl~v~v-~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNI-PDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEc-CCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 34578999999 999999999999999999999987664 3234555556766542 33444456555544
No 180
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=90.33 E-value=15 Score=38.12 Aligned_cols=107 Identities=22% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCeEEEEEEecC---cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 245 PSHTLIQILGQD---HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 245 ~~~t~v~V~~~D---rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
.+.+.|+|...- .+|.++++...|.++|++|.. |.+. .+ ...=.|.+.. .......+.|.+....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~-~~~i~~~v~~--------~~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-IS-EVSISFTVPE--------SDAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cC-CCeEEEEEch--------hhHHHHHHHHHHHHhh
Confidence 455667776643 459999999999999999985 5422 22 1124455531 1122233333333322
Q ss_pred Cc-ceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010 322 PL-RVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 322 ~~-~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
.. .+.. .+++ ..|.+.|. ..||+.+.+..+|.+.++||...-
T Consensus 373 ~~~~v~~-~~~~-------a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 373 LLAEVEV-EEGL-------ALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred hcceEEe-eCCe-------eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 21 1110 1111 14555544 689999999999999999999766
No 181
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=90.02 E-value=0.53 Score=48.21 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=46.8
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK 408 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~ 408 (414)
..|-+.-+|+||.+..|+..|.++|+||..-+..+ .|+. +. ++.+.++ ++.++ .+++|++
T Consensus 339 ~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~--~~~~--A~---~iie~D~-~~~~~-~~~~i~~ 398 (409)
T PRK11790 339 HRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQT--DGEI--GY---VVIDVDA-DYAEE-ALDALKA 398 (409)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheecc--CCCE--EE---EEEEeCC-CCcHH-HHHHHHc
Confidence 37778999999999999999999999999999988 8877 44 4445555 44444 5677764
No 182
>PRK08210 aspartate kinase I; Reviewed
Probab=89.62 E-value=7.7 Score=39.52 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=62.2
Q ss_pred CeEEEEEEecCc-ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 015010 246 SHTLIQILGQDH-KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR 324 (414)
Q Consensus 246 ~~t~v~V~~~Dr-pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 324 (414)
+...|+|...+. ||.+++|..+|+++|+||.. +.+. .. .=.|.+. .+..+++.+.|.+ +.. .
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~--i~~~--~~--~is~~v~--------~~~~~~a~~~l~~-~~~--~ 332 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDF--INIF--PT--EVVFTVS--------DEDSEKAKEILEN-LGL--K 332 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEE--EEec--Cc--eEEEEEc--------HHHHHHHHHHHHH-hCC--c
Confidence 445667766555 99999999999999999996 3321 11 1234543 1223344343433 111 1
Q ss_pred eeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010 325 VAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFS 369 (414)
Q Consensus 325 ~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~ 369 (414)
+.. ..+. ..|.|.+. ++||++.++..+|.+.|++|..
T Consensus 333 v~~-~~~~-------a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSV-RENC-------AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEE-eCCc-------EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 111 1111 25666665 7999999999999999999975
No 183
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.47 E-value=1.5 Score=44.94 Aligned_cols=50 Identities=14% Similarity=0.153 Sum_probs=42.7
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
....|.+.- .|+||.++.|+.+|+++|+||..-+.++ .++.++-+|-+..
T Consensus 337 ~~~rlii~h-~d~pG~ia~it~~l~~~~iNI~~m~~~~-~~~~A~~iie~D~ 386 (409)
T PRK11790 337 GGHRLLHIH-ENRPGVLAAINQIFAEQGINIAAQYLQT-DGEIGYVVIDVDA 386 (409)
T ss_pred CCceEEEEe-CCCCCHHHHHHHHHHhcCCCHHHheecc-CCCEEEEEEEeCC
Confidence 556777788 9999999999999999999999999988 6788877776644
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.18 E-value=4 Score=31.84 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=36.4
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCC-HHHHHHHHHHHHH
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHT-RKRREETIHHLEA 180 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~-~~~~~~i~~~L~~ 180 (414)
.+.+.- +||||=|++++.+|+ +.||....-.....+.+--.+.+..+ + ++..+++.+.|++
T Consensus 3 vl~v~i-pD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-----~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTI-PERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-----NGAEELAELLEDLKS 64 (85)
T ss_pred EEEEec-CCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-----CcHHHHHHHHHHHHH
Confidence 467778 999999999999999 66777444333222332222333321 3 4455566555544
No 185
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=89.17 E-value=0.25 Score=38.76 Aligned_cols=29 Identities=14% Similarity=0.335 Sum_probs=27.1
Q ss_pred EEEEEecC-cccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQD-HKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~D-rpGLL~~i~~~L~~~~l~I~~ 277 (414)
+|+|.++| +.|++++++.+|+++|+||.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~ 30 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR 30 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence 47899999 999999999999999999975
No 186
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=88.86 E-value=1 Score=33.37 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.8
Q ss_pred eEEEEeC----CccchHHHHHHHHHhCCceEEEEE
Q 015010 341 PVELSGR----GRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 341 ~lev~~~----DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
.|.|.+. |.||+++.|+.+|.+.|++|+..-
T Consensus 8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 5666665 799999999999999999998766
No 187
>PLN02551 aspartokinase
Probab=88.79 E-value=5 Score=42.48 Aligned_cols=111 Identities=14% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH---HHH
Q 015010 245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL---RME 318 (414)
Q Consensus 245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L---~~~ 318 (414)
.+.+.|+|.+. +.||.+.++...|+++|++|.. |.++ . .-=.|.++.+. +.. .+.+.+.+ ...
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--IssS-e---~sIs~~v~~~~--~~~---~~~i~~~l~~l~~e 432 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VATS-E---VSISLTLDPSK--LWS---RELIQQELDHLVEE 432 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eecc-C---CEEEEEEehhH--hhh---hhhHHHHHHHHHHH
Confidence 34567888765 6899999999999999999995 5422 2 22245664211 111 11222222 222
Q ss_pred HcCCcceeeecCCCCceeeeeeeEEEEeC--CccchHHHHHHHHHhCCceEEEEEEec
Q 015010 319 LLRPLRVAVVNRGPDAELLVANPVELSGR--GRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 319 l~~~~~~~~~~~~~~~~v~~~~~lev~~~--DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
|.....+.. .. .+ .+|.|.|. .+||++.++-.+|.+.|++|..--.++
T Consensus 433 l~~~~~V~v-~~----~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqga 482 (521)
T PLN02551 433 LEKIAVVNL-LQ----GR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGA 482 (521)
T ss_pred hhcCCeEEE-eC----CE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecC
Confidence 321111110 01 11 24555543 689999999999999999998655444
No 188
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=88.61 E-value=30 Score=35.12 Aligned_cols=106 Identities=14% Similarity=0.302 Sum_probs=66.0
Q ss_pred CeEEEEEE---EecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 109 DVFLLKFW---CFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 109 ~~~~i~v~---~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
+...|+|. . .+++|.++++..+|.++|+||..-... .....+ .|.|.. +..++..+.|.+.+..
T Consensus 259 ~va~vsv~g~~~-~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~I-s~~V~~--------~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 259 NVTRVTVHGLGM-LGKRGFLARIFGALAERNINVDLISQT--PSETSI-SLTVDE--------TDADEAVRALKDQSGA- 325 (401)
T ss_pred CEEEEEEecCCC-CCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceE-EEEEeH--------HHHHHHHHHHHHHHHh-
Confidence 45678887 5 678999999999999999999743221 122222 355532 1223333333332210
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIY 262 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~ 262 (414)
. . ...+.+ ..+.+.|.|.+. ++||+++
T Consensus 326 ------------~---------------------------------~-~~~i~~----~~~~a~IsvVG~~~~~~~g~~a 355 (401)
T TIGR00656 326 ------------A---------------------------------G-LDRVEV----EEGLAKVSIVGAGMVGAPGVAS 355 (401)
T ss_pred ------------c---------------------------------C-CceEEE----eCCeEEEEEECCCcccCccHHH
Confidence 0 0 001212 234567777774 7899999
Q ss_pred HHHHHHHhCCceEEe
Q 015010 263 DMMRTLKDYNTQVSY 277 (414)
Q Consensus 263 ~i~~~L~~~~l~I~~ 277 (414)
++..+|.+.|+||..
T Consensus 356 ~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 356 EIFSALEEKNINILM 370 (401)
T ss_pred HHHHHHHHCCCcEEE
Confidence 999999999999984
No 189
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=88.17 E-value=1.6 Score=38.34 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCcEEEEEEE-EecCCEEEEEEEEEc-----CCCCC-------------HHHHHHHHHHhCCCCCcCCccc
Q 015010 35 CDLCRIILLFGLSISRGDL-SKDGKWCYLVFWVVG-----KPTTR-------------WSLLKNRLLEVCPSYFSTSRIY 95 (414)
Q Consensus 35 ~~~~~vl~~~~L~I~~a~i-~tdg~~~~d~f~v~~-----~~g~~-------------~~~l~~~l~~~~~~~~~~~~~~ 95 (414)
..++..|.+.|++|..+.. .+.+ --+.. ..|.| ...|+..++++.|-..-.
T Consensus 16 ~~Vvk~l~~~GisV~~g~~~~~gd------IEI~~t~iAka~gVdRrvV~~Ti~~I~sd~~L~~if~nl~P~a~l~---- 85 (167)
T COG2150 16 KKVVKKLLESGISVKNGGKIYCGD------IEIPITKIAKATGVDRRVVYATIELIESDEELRRIFENLEPVASLA---- 85 (167)
T ss_pred HHHHHHHHHhCeeEccCCceeeCc------EEechHHHHHHhCcchHhHHHHHHHHhcCHHHHHHHHhccchhhHH----
Confidence 5789999999999998875 3322 11211 12333 334555555554431100
Q ss_pred ccccccccCCCCCCeEEEEEEE-ecCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 96 SYRLENQQQPKPPDVFLLKFWC-FQDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~v~~-~~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
.+ .+ --+.-+|++.. +.+.||+++.+++.++++||+|+.+-.
T Consensus 86 ----~v--A~-~lG~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 86 ----DV--AP-LLGLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred ----HH--HH-hcCCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 00 01 11334455554 277899999999999999999998755
No 190
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=88.08 E-value=1.5 Score=41.20 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=46.2
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEE--EEEEecCCCCCCCHHHHHHHHHHHHHHH
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMD--LFFITDTRELLHTRKRREETIHHLEAVL 182 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d--~f~V~~~~~~~~~~~~~~~i~~~L~~~l 182 (414)
....|.+.. .|.||.+++|+++|+..|+||-+--+-- ....++. ++.+.+. ..-+++.+++|++..
T Consensus 76 krHvinclV-qnEpGvlsRisGvlAaRGfNIdSLvVc~-tevk~LsrmTIVl~Gt------d~VveQa~rQiedlV 143 (309)
T KOG2663|consen 76 KRHVINCLV-QNEPGVLSRISGVLAARGFNIDSLVVCL-TEVKALSRMTIVLQGT------DGVVEQARRQIEDLV 143 (309)
T ss_pred cceeEEEEe-cCCchHHHHHHHHHHhccCCchheeeec-hhhhhhhhceEEEecc------HHHHHHHHHHHHHhh
Confidence 456788888 8999999999999999999999877754 2333443 4556653 223455555555544
No 191
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=87.57 E-value=3 Score=42.35 Aligned_cols=52 Identities=12% Similarity=0.244 Sum_probs=40.9
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCC
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGK 300 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~ 300 (414)
.|.+-+..+|+||.|+++...|+.+|+|+.. |.+...... ..=+|+++.+|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtk--IeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTK--LESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeE--EEeeecCCCCceEEEEEEEeCC
Confidence 5667677789999999999999999999994 887644434 445678886675
No 192
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=87.42 E-value=2.7 Score=45.62 Aligned_cols=63 Identities=21% Similarity=0.341 Sum_probs=45.5
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEE-EEEecCCCCCCCHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDL-FFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.+.|.|.+ .||+|||++|+.+|+..+.||.+....+. ++....+ |.+.- .+...+.+|-.+|.
T Consensus 627 ~~~i~v~~-~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v-----~n~~~L~~i~~~l~ 690 (701)
T COG0317 627 PVDIEIRA-YDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEV-----KNLNHLGRVLARLK 690 (701)
T ss_pred EEEEEEEE-ccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEE-----CcHHHHHHHHHHHh
Confidence 67999999 99999999999999999999999988885 4433332 33322 23445555544444
No 193
>PRK06382 threonine dehydratase; Provisional
Probab=87.01 E-value=3.7 Score=42.00 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE---eeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA---KPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t---~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
....+.+.|.-+|+||-|.+++..|.++|+||.+-.... ....+...=+|.++.. +++..+.|.+.|++
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 445678999999999999999999999999998744321 1111233344555411 23444566666644
No 194
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=86.77 E-value=8.6 Score=43.07 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=66.3
Q ss_pred CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
.+.+.|.|.+. ++||++.++..+|+++|++|.. |... .+ ..-=.|.++. +..+...+.|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~m--Isqs-sS-e~sIsf~V~~--------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVL--ITQS-SS-EYSISFCVPQ--------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEE--EEcC-CC-CceEEEEEeH--------HHHHHHHHHHHHHHHH
Confidence 45677888765 6799999999999999999985 3311 22 1222455541 1222333334333321
Q ss_pred CcceeeecCCCCceeee---eeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010 322 PLRVAVVNRGPDAELLV---ANPVELSGR---GRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 322 ~~~~~~~~~~~~~~v~~---~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
+.. .... ..+.+ -..|.|.|. ++||++.++-.+|.+.|++|..--
T Consensus 381 el~----~~~~-~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 381 ELK----EGLL-EPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred Hhc----cCCc-ceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 100 0000 01111 126667665 789999999999999999998653
No 195
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.36 E-value=3.6 Score=41.52 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=34.5
Q ss_pred eeEEEEe-CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEE
Q 015010 340 NPVELSG-RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLD 390 (414)
Q Consensus 340 ~~lev~~-~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~ 390 (414)
+.|-+.- +|+||.|++|+..|.++|+||.+-.+.. .++|..- |||.
T Consensus 296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~----~r~~~y~-f~i~ 342 (370)
T PRK08818 296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSR----TPAGELH-FRIG 342 (370)
T ss_pred eEEEEECCCCCCChHHHHHHHHHHcCcccceEEEec----ccCceEE-EEEE
Confidence 3444455 4999999999999999999999877722 3344554 8884
No 196
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.65 E-value=4.1 Score=36.04 Aligned_cols=68 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
...+.+.- .|.||.|+++++.|+..|+||.+-.+.-+.+....=+-.|... ++...++|...|.....
T Consensus 4 ~rilsvlv-~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 4 RRILSLLV-ENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred eEEEEEEE-ECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-----CcchHHHHHHHHHhhcc
Confidence 35677888 9999999999999999999999988876555443222233321 34566777777777653
No 197
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=85.19 E-value=6.4 Score=39.73 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=45.2
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE---eC-CCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS---TT-PDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~---T~-~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
....+.|.- +||||.|++++..++++|.||.+-.-. .. ..+.+.-.+.+... +++..+.|.+.|++
T Consensus 304 r~~~l~v~l-~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 304 RKVRIETVL-PDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD 373 (380)
T ss_pred CEEEEEEEe-CCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence 356899999 999999999999999999999987443 21 23454444545431 34455556555544
No 198
>PRK12483 threonine dehydratase; Reviewed
Probab=85.10 E-value=50 Score=35.00 Aligned_cols=118 Identities=17% Similarity=0.127 Sum_probs=67.4
Q ss_pred CeeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe-cCCEEEEEEEEEcCCC-CCH-HHHHHHHHHhCCCCCcCCc--
Q 015010 19 DCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK-DGKWCYLVFWVVGKPT-TRW-SLLKNRLLEVCPSYFSTSR-- 93 (414)
Q Consensus 19 ~~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t-dg~~~~d~f~v~~~~g-~~~-~~l~~~l~~~~~~~~~~~~-- 93 (414)
.-..+.|.-|||||-|.+++.+|... +|..-.... ..+-+. ++....-.+ .+. +.|...|++..-.....+.
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~~~~~~~i~~~l~~~g~~~~dlsdne 420 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPRHDPRAQLLASLRAQGFPVLDLTDDE 420 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCChhhhHHHHHHHHHHCCCCeEECCCCH
Confidence 34468899999999999999999988 777665542 222222 233322223 232 3456666554332211111
Q ss_pred --cccccccccc-CCCCCCeEEEEEEEecCCcchHHHHHHHHHhC-CCeEE
Q 015010 94 --IYSYRLENQQ-QPKPPDVFLLKFWCFQDRKGLLHDVTEVLCEL-ELTIK 140 (414)
Q Consensus 94 --~~~~~~~~~~-~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~-glnI~ 140 (414)
....+..++- .+....--.+.|.- |.|||=|.+.+..|... +++-.
T Consensus 421 ~~k~h~r~~~g~~~~~~~~E~~~~v~i-PE~pGa~~~f~~~l~~~~niTeF 470 (521)
T PRK12483 421 LAKLHIRHMVGGRAPLAHDERLFRFEF-PERPGALMKFLSRLGPRWNISLF 470 (521)
T ss_pred HHHHHHHhccCCCCCCCCceEEEEEEc-CCCCcHHHHHHHHhCCCcceeee
Confidence 0112222221 12233456677777 99999999999999852 44443
No 199
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.03 E-value=3.3 Score=36.58 Aligned_cols=68 Identities=7% Similarity=0.079 Sum_probs=46.6
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
.+.+.-.|.||.|.++++.|+..|+||.+-.+..+......--++.+. | ++...+++.+.|.+.+.-.
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLidV~ 73 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G----DEQVLEQIIKQLNKLIDVL 73 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C----CcchHHHHHHHHHhhccce
Confidence 577888999999999999999999999986665322222222222322 2 2355788888887777533
No 200
>PRK08198 threonine dehydratase; Provisional
Probab=84.64 E-value=9.1 Score=39.00 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=45.1
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe----CCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST----TPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T----~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
....+.|.- +|+||-|+++...+++.|.||.+-...- .+.+.+--.+.|.. .+++..+.|.+.|++
T Consensus 326 r~~~l~v~l-~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~l~~~L~~ 395 (404)
T PRK08198 326 RYLKLRVRL-PDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET-----RGPEHIEEILDALRD 395 (404)
T ss_pred CEEEEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 467899999 9999999999999999999999877653 12343332233322 134455566555544
No 201
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.58 E-value=8.1 Score=30.07 Aligned_cols=61 Identities=7% Similarity=0.048 Sum_probs=35.8
Q ss_pred EEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCC-hHHHHHHHHHHHH
Q 015010 249 LIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVD-PSKQDALCSRLRM 317 (414)
Q Consensus 249 ~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~-~~~~~~l~~~L~~ 317 (414)
++.|.-+||||=|.+++.+|. +.||....-.. ...+.+.-.+.+.- .+ ++..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~-----~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSV-----ANGAEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEe-----CCcHHHHHHHHHHHHH
Confidence 577888999999999999999 44555322221 11123333334441 22 4556666666644
No 202
>PRK11898 prephenate dehydratase; Provisional
Probab=83.83 E-value=5.8 Score=38.50 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=44.1
Q ss_pred eEEEEEEecC-cccHHHHHHHHHHhCCceEEeEEEEEeeCCCE-EEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 247 HTLIQILGQD-HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC-EVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 247 ~t~v~V~~~D-rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~-~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
.|.+.+..++ +||-|+++...|+++|+|+.+ |.+...... ..=.|+++-+|.. .+ ...+++.+.|++
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~~y~F~vd~eg~~-~~-~~~~~al~~L~~ 264 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLGTYFFFIDVEGHI-DD-VLVAEALKELEA 264 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCccEEEEEEEEccC-CC-HHHHHHHHHHHH
Confidence 4556666655 699999999999999999995 876543322 3345778766653 33 234444444543
No 203
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.55 E-value=8.1 Score=38.99 Aligned_cols=33 Identities=12% Similarity=0.295 Sum_probs=29.5
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeE
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYG 278 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A 278 (414)
....+.|.-+||||.|.+++..+++++.||.+-
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i 336 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKI 336 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 334789999999999999999999999999863
No 204
>PRK08210 aspartate kinase I; Reviewed
Probab=83.49 E-value=55 Score=33.29 Aligned_cols=99 Identities=15% Similarity=0.158 Sum_probs=65.4
Q ss_pred CeeEEEEeCCCC-CChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHHHHHhCCCCCcCCccccc
Q 015010 19 DCTVITVNCPDK-TGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNRLLEVCPSYFSTSRIYSY 97 (414)
Q Consensus 19 ~~~~v~v~~~d~-~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~ 97 (414)
+...|+|...+. +|.+.++...|+++|.+|---..+++. -.|.+... +.+.+...|.+++.
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~----is~~v~~~---~~~~a~~~l~~~~~----------- 331 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE----VVFTVSDE---DSEKAKEILENLGL----------- 331 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce----EEEEEcHH---HHHHHHHHHHHhCC-----------
Confidence 444677766655 999999999999999998877544332 34555321 11223333443221
Q ss_pred ccccccCCCCCCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEE
Q 015010 98 RLENQQQPKPPDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKR 141 (414)
Q Consensus 98 ~~~~~~~~~~~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~ 141 (414)
.+ ....+...|.+.+ . ++||+++++..+|++.|+||..
T Consensus 332 --~v---~~~~~~a~isvvG-~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 --KP---SVRENCAKVSIVG-AGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred --cE---EEeCCcEEEEEEc-CCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 00 0112456777776 5 7899999999999999999974
No 205
>PRK09084 aspartate kinase III; Validated
Probab=83.39 E-value=23 Score=36.69 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
.+.+.|+|.+. +.||.++++...|+++|++|.. |.++ . .-=.|.++.... . ......+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~ss-e---~sIs~~i~~~~~--~-~~~~~~~~~~l~~el~~ 374 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITTS-E---VSVSLTLDTTGS--T-STGDTLLTQALLTELSQ 374 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eecc-C---cEEEEEEechhh--h-hhhhHHHHHHHHHHHhc
Confidence 34567888765 6889999999999999999995 5422 1 223456642111 0 11112233334344432
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCc
Q 015010 322 PLRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSI 365 (414)
Q Consensus 322 ~~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl 365 (414)
...+.. ..+ -..|.|.|. ++||++.++-.+|.+.++
T Consensus 375 ~~~i~~-~~~-------va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 375 LCRVEV-EEG-------LALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred CCeEEE-ECC-------eEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 111111 111 126777776 789999999999987543
No 206
>PRK09181 aspartate kinase; Validated
Probab=83.37 E-value=21 Score=37.31 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=67.0
Q ss_pred CeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 246 SHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 246 ~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+.+.|+|.+. +.+|+++++..+|++++++|.. +.++ . ..-.|.+..+ ..+.+++.+.|++.+...
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss-~---~sis~~v~~~------~~~~~~~~~~L~~~~~~~ 395 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATN-A---NTITHYLWGS------LKTLKRVIAELEKRYPNA 395 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEec-C---cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence 5667777654 6899999999999999999983 4422 1 2223455321 123455555565544311
Q ss_pred cceeeecCCCCceeeeeeeEEEEeCC--ccchHHHHHHHHHhCCceEEEEEE
Q 015010 323 LRVAVVNRGPDAELLVANPVELSGRG--RPLVFYDITLALKILSISIFSVEI 372 (414)
Q Consensus 323 ~~~~~~~~~~~~~v~~~~~lev~~~D--RpGLL~dIt~~l~~~gl~I~~A~I 372 (414)
.+. ..+. .+|.+.|.+ +||+..++-.+|.+.|++|..---
T Consensus 396 -~i~--~~~~-------a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 396 -EVT--VRKV-------AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQ 437 (475)
T ss_pred -eEE--ECCc-------eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEe
Confidence 111 1111 256666654 899999999999999999975433
No 207
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=83.20 E-value=29 Score=35.82 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred CeEEEEEEecCc--ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCc
Q 015010 246 SHTLIQILGQDH--KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPL 323 (414)
Q Consensus 246 ~~t~v~V~~~Dr--pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~ 323 (414)
+...|+|.+.+- ||++.++..+|+++|++|.. |... ..+ ..=.|.++. +..++..+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~--i~q~-~se-~sIs~~I~~--------~~~~~a~~~L~~~~~~~- 367 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDL--ITQS-SSE-TSISFTVDK--------EDADQAKTLLKSELNLS- 367 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEec-CCC-ceEEEEEEH--------HHHHHHHHHHHHHHHhc-
Confidence 455677766443 79999999999999999985 4321 121 112344441 11222223332221111
Q ss_pred ceeeecCCCCceeee---eeeEEEEeC---CccchHHHHHHHHHhCCceEEEEE
Q 015010 324 RVAVVNRGPDAELLV---ANPVELSGR---GRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 324 ~~~~~~~~~~~~v~~---~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
.+ ..+.+ -..|.|.+. ++||++++|..+|.+.|++|..--
T Consensus 368 ~~--------~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 368 AL--------SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred Cc--------ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 01 01111 126677554 789999999999999999997653
No 208
>PRK09034 aspartate kinase; Reviewed
Probab=83.12 E-value=17 Score=37.84 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=77.8
Q ss_pred CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+.+.|++.. .++||+++++...|+++|++|.. |. .+. ..=.|.++.. .+. ...+..+.+.|...+.-
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~---ss~-~sis~~v~~~--~~~-~a~~~~l~~el~~~~~~- 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP---SGI-DDLSIIIRER--QLT-PKKEDEILAEIKQELNP- 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec---CCC-cEEEEEEeHH--Hhh-HHHHHHHHHHHHHhhCC-
Confidence 345667764 67899999999999999999996 42 221 2234666421 011 11113344444433320
Q ss_pred cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCc
Q 015010 323 LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPR 399 (414)
Q Consensus 323 ~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~ 399 (414)
..+.. .+. -..|.+.|. ++||+++++-.+|.+.|++|..---++ .. . -+ .|.|.+.+.
T Consensus 377 ~~I~~-~~~-------va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~--Se-~--~I-s~vV~~~d~----- 437 (454)
T PRK09034 377 DELEI-EHD-------LAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS--SE-I--SI-MFGVKNEDA----- 437 (454)
T ss_pred ceEEE-eCC-------EEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC--Cc-c--eE-EEEEcHHHH-----
Confidence 01100 111 126677554 789999999999999999998764434 11 1 11 355543321
Q ss_pred hHHHHHHHHHHcc
Q 015010 400 NKIEDLVRKILMG 412 (414)
Q Consensus 400 ~~~~~~i~~~L~~ 412 (414)
++.+..|.+++.+
T Consensus 438 ~~av~~LH~~f~~ 450 (454)
T PRK09034 438 EKAVKAIYNAFFK 450 (454)
T ss_pred HHHHHHHHHHHhc
Confidence 1235666666654
No 209
>PRK06291 aspartate kinase; Provisional
Probab=83.07 E-value=63 Score=33.66 Aligned_cols=106 Identities=11% Similarity=0.237 Sum_probs=66.7
Q ss_pred CeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 109 DVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 109 ~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
+...|++.+ . +.+|+++++..+|+++|+||.--...+ ....+ .|.|.. ...++..+.|.+.+...
T Consensus 320 ~valIsI~g-~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sI-sf~V~~--------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISG-AGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNI-SLVVDE--------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeC-CCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceE-EEEEeH--------HHHHHHHHHHHHHHHHh
Confidence 466788876 4 689999999999999999998643333 22222 344532 12222323333333210
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLIY 262 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL~ 262 (414)
. ...|.+. .+...|.|.+. +++|+..
T Consensus 388 ------------------------------~-----------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~ 416 (465)
T PRK06291 388 ------------------------------L-----------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAG 416 (465)
T ss_pred ------------------------------c-----------------CcceEEe----CCEEEEEEEcCCccCCcChHH
Confidence 0 0012221 23457777775 6899999
Q ss_pred HHHHHHHhCCceEEe
Q 015010 263 DMMRTLKDYNTQVSY 277 (414)
Q Consensus 263 ~i~~~L~~~~l~I~~ 277 (414)
++..+|...|++|..
T Consensus 417 rif~aL~~~~I~v~~ 431 (465)
T PRK06291 417 RIFSALGESGINIKM 431 (465)
T ss_pred HHHHHHHHCCCCEEE
Confidence 999999999999984
No 210
>PLN02317 arogenate dehydratase
Probab=82.95 E-value=6.5 Score=39.75 Aligned_cols=66 Identities=12% Similarity=0.210 Sum_probs=44.9
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCE---------------EEEEEEEecCCCCCCChHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNC---------------EVDLFIMQADGKKIVDPSKQDAL 311 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~---------------~~D~F~v~~~g~~~~~~~~~~~l 311 (414)
.|.|.+.-+|+||-|+++..+|+.+|+|+.+ |.+...... ..=.||++-+|.. .+ .+.+..
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtk--IESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~~-~d-~~~~~a 358 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTK--IESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEASM-AD-PRAQNA 358 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEE--EEeeecCCCCccccccccccccccccEEEEEEEEcCc-CC-HHHHHH
Confidence 4677777799999999999999999999995 876543322 2346788866653 33 233333
Q ss_pred HHHHH
Q 015010 312 CSRLR 316 (414)
Q Consensus 312 ~~~L~ 316 (414)
.+.|+
T Consensus 359 L~~L~ 363 (382)
T PLN02317 359 LAHLQ 363 (382)
T ss_pred HHHHH
Confidence 34443
No 211
>PRK06545 prephenate dehydrogenase; Validated
Probab=82.77 E-value=4.3 Score=40.72 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 245 PSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 245 ~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
+.++.|.|.-+||||-+++++..|...|+||.+-+|.
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~ 324 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRIL 324 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceee
Confidence 4678899999999999999999999999999998886
No 212
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=82.31 E-value=9.7 Score=32.43 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=43.6
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
+.-+.+.+.- .||.|.|+++-.++++.+|||+.-+..--.+|++--+..+..
T Consensus 70 ~ri~TL~l~l-edr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 70 ERIITLSLSL-EDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ceEEEEEEEE-hhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 3567888999 999999999999999999999999888767887655555543
No 213
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=82.01 E-value=5.4 Score=41.19 Aligned_cols=68 Identities=6% Similarity=-0.013 Sum_probs=45.9
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEE--EEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVD--LFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D--~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
....|.|.+..+|+||-|+++-..|+.+|+|+.+ |.+........+ .|+|+-+|.. ...+++.+.|+.
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfVD~Eg~~----~~l~~aL~~Lk~ 97 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLVDVELFH----YGLQEAMDLLKS 97 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEEEEEcCH----HHHHHHHHHHHH
Confidence 3445667777799999999999999999999996 876544333333 5777744442 234444455544
No 214
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.91 E-value=6.8 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=31.9
Q ss_pred EEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEe
Q 015010 113 LKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFIT 159 (414)
Q Consensus 113 i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~ 159 (414)
|++.+-++.+|.++++...|.++|++|.........+|..--.|.|.
T Consensus 3 v~v~~~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 3 VTIKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred EEEecCCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 44443388899999999999999999977555332333222246554
No 215
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.74 E-value=3.2 Score=43.98 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=44.1
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK 408 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~ 408 (414)
.+=+.-.|+||.+..|+..|.+.++||....++....|+. +. ++...++ +++++ .+++|++
T Consensus 454 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~--al---~~i~~D~-~v~~~-~l~~i~~ 514 (526)
T PRK13581 454 MLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGE--AL---MVLSVDD-PVPEE-VLEELRA 514 (526)
T ss_pred EEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCe--EE---EEEECCC-CCCHH-HHHHHhc
Confidence 3444568999999999999999999999999987444555 44 3333433 55555 6777764
No 216
>PLN02551 aspartokinase
Probab=81.55 E-value=77 Score=33.63 Aligned_cols=108 Identities=15% Similarity=0.299 Sum_probs=66.1
Q ss_pred CeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 109 DVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 109 ~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
+.+.|+|.+ . +++|.+++|...|+++|++|.-- .| . ...+ .|.+.... ....+.+++.+...+..
T Consensus 365 ~v~li~i~~-~~m~~~~g~~arvf~~l~~~~I~Vd~I--ss-S-e~sI-s~~v~~~~-----~~~~~~i~~~l~~l~~e- 432 (521)
T PLN02551 365 NVTMLDIVS-TRMLGQYGFLAKVFSTFEDLGISVDVV--AT-S-EVSI-SLTLDPSK-----LWSRELIQQELDHLVEE- 432 (521)
T ss_pred CeEEEEEec-CCCCCcccHHHHHHHHHHHcCCcEEEE--ec-c-CCEE-EEEEehhH-----hhhhhhHHHHHHHHHHH-
Confidence 567888876 5 68999999999999999999854 33 2 2222 35554321 11122233333332221
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec--CcccHHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ--DHKGLIYD 263 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~--DrpGLL~~ 263 (414)
+. .. ..|.+. .+...|.|.+. .+||++.+
T Consensus 433 --------------------------l~-~~------------------~~V~v~----~~vAiISvVG~~~~~~gvaar 463 (521)
T PLN02551 433 --------------------------LE-KI------------------AVVNLL----QGRSIISLIGNVQRSSLILEK 463 (521)
T ss_pred --------------------------hh-cC------------------CeEEEe----CCEEEEEEEccCCCCccHHHH
Confidence 00 00 012222 24556666654 67999999
Q ss_pred HHHHHHhCCceEEe
Q 015010 264 MMRTLKDYNTQVSY 277 (414)
Q Consensus 264 i~~~L~~~~l~I~~ 277 (414)
+..+|+..|+||..
T Consensus 464 iF~aLa~~gInV~m 477 (521)
T PLN02551 464 VFRVLRTNGVNVQM 477 (521)
T ss_pred HHHHHHHCCCCeEE
Confidence 99999999999984
No 217
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.34 E-value=4.4 Score=42.95 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=38.3
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEE
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIM 295 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v 295 (414)
.+..+.+...|+||.+..++..|.++++||..-++.....|+.+.-++.+
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 44556667799999999999999999999998777644355555555554
No 218
>PLN02317 arogenate dehydratase
Probab=80.34 E-value=6.6 Score=39.74 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=38.1
Q ss_pred eeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCcee-------------eEEEEEEEEcCCCCC
Q 015010 340 NPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDRE-------------WEVYRILLDEADGNL 396 (414)
Q Consensus 340 ~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~-------------~~~d~Fyv~d~~g~~ 396 (414)
+.|-+.-.|+||.|+++-.+|+..|||+.+-. ++....+. .-.+.||| |-+|..
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIE--SRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~ 350 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIE--SRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASM 350 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEE--eeecCCCCccccccccccccccccEEEEE-EEEcCc
Confidence 45666668899999999999999999999544 32233321 13578999 556654
No 219
>PRK09181 aspartate kinase; Validated
Probab=80.19 E-value=81 Score=33.04 Aligned_cols=103 Identities=16% Similarity=0.268 Sum_probs=64.5
Q ss_pred CeEEEEEEEe--cCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcccc
Q 015010 109 DVFLLKFWCF--QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTL 186 (414)
Q Consensus 109 ~~~~i~v~~~--~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~ 186 (414)
+.+.|+|.+. .+.+|+.++|..+|+++|++|. .+.++. ..+ .|.|... ..+.+++.+.|+..+..
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~si-s~~v~~~------~~~~~~~~~~L~~~~~~-- 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTI-THYLWGS------LKTLKRVIAELEKRYPN-- 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEE-EEEEcCC------hHHHHHHHHHHHHhcCC--
Confidence 5667777651 2789999999999999999998 344422 222 3555431 11223332333322210
Q ss_pred ccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecC--cccHHHHH
Q 015010 187 ISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQD--HKGLIYDM 264 (414)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~D--rpGLL~~i 264 (414)
..+.. .+...|.|.+.. +||+.+++
T Consensus 395 ------------------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~ 421 (475)
T PRK09181 395 ------------------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKA 421 (475)
T ss_pred ------------------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHH
Confidence 01110 234567777654 89999999
Q ss_pred HHHHHhCCceEEe
Q 015010 265 MRTLKDYNTQVSY 277 (414)
Q Consensus 265 ~~~L~~~~l~I~~ 277 (414)
..+|.+.|+||..
T Consensus 422 f~aL~~~~Ini~~ 434 (475)
T PRK09181 422 VQALAEAGINVLA 434 (475)
T ss_pred HHHHHHCCCCeEE
Confidence 9999999999984
No 220
>PRK08818 prephenate dehydrogenase; Provisional
Probab=79.83 E-value=7.7 Score=39.19 Aligned_cols=61 Identities=18% Similarity=0.172 Sum_probs=47.9
Q ss_pred CeeEEEEeCC-CCCChhHHHHHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCCCCCHHHHHHH
Q 015010 19 DCTVITVNCP-DKTGLGCDLCRIILLFGLSISRGDLSKDGKWCYLVFWVVGKPTTRWSLLKNR 80 (414)
Q Consensus 19 ~~~~v~v~~~-d~~Gll~~~~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~g~~~~~l~~~ 80 (414)
..+.+.+.-| |+||-++++.++|+.+|++|++=.+.-...|-+- |.+......+...|...
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~~~~~~~~~~ 355 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPGSDRAALARA 355 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEeccccHHHHHHH
Confidence 5678888997 9999999999999999999999988644447777 88876665554445443
No 221
>PRK08198 threonine dehydratase; Provisional
Probab=79.75 E-value=16 Score=37.15 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=31.9
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEE
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRF 280 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I 280 (414)
......+.|.-+|+||-|.++...+.+.|.||.+-..
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~ 360 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDH 360 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEE
Confidence 3455689999999999999999999999999997443
No 222
>PRK11898 prephenate dehydratase; Provisional
Probab=79.58 E-value=6.7 Score=38.08 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=35.7
Q ss_pred EEEEeC-CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 342 VELSGR-GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 342 lev~~~-DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
|-+.-. ++||-|+++-..|+++|+|+.+ |.++....+.| .+.||| |-+|..
T Consensus 199 lif~l~~~~pGsL~~~L~~F~~~~INLt~--IeSRP~~~~~~-~y~F~v-d~eg~~ 250 (283)
T PRK11898 199 LVLTLPNNLPGALYKALSEFAWRGINLTR--IESRPTKTGLG-TYFFFI-DVEGHI 250 (283)
T ss_pred EEEEeCCCCccHHHHHHHHHHHCCCCeee--EecccCCCCCc-cEEEEE-EEEccC
Confidence 334443 5799999999999999999995 54433444444 468988 555654
No 223
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=79.42 E-value=3.5 Score=43.67 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=44.8
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHH
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRK 408 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~ 408 (414)
.+=+.-.||||.+..|+..|.++++||...++.....|++ +. ++...++ +++++ .+++|++
T Consensus 453 ~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~--al---~~i~~D~-~v~~~-~l~~i~~ 513 (525)
T TIGR01327 453 MLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGE--AL---MLLSLDQ-PVPDE-VLEEIKA 513 (525)
T ss_pred EEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCe--EE---EEEEcCC-CCCHH-HHHHHhc
Confidence 3444557999999999999999999999999988556666 55 3333333 56555 6777764
No 224
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=79.35 E-value=20 Score=26.00 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=26.2
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
.|++.+-+|++|.++++..+|++.|+||.....
T Consensus 3 ~v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 3 KITLRGVPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 344454379999999999999999999985443
No 225
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=79.14 E-value=3.1 Score=39.21 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEE
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRF 280 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I 280 (414)
-++.+...|-||.+.+|+++|+..|+||.+--+
T Consensus 78 HvinclVqnEpGvlsRisGvlAaRGfNIdSLvV 110 (309)
T KOG2663|consen 78 HVINCLVQNEPGVLSRISGVLAARGFNIDSLVV 110 (309)
T ss_pred eeEEEEecCCchHHHHHHHHHHhccCCchheee
Confidence 358999999999999999999999999998544
No 226
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=78.95 E-value=6 Score=40.62 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=38.0
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
.|-++..|+||-|++|-.+|+++|+|+.+ |.++....+.| .+.||| |-+|..
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~-eY~FFV-D~eg~~ 69 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPG-EYEFFV-EFDEAS 69 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCc-cEEEEE-EEecCc
Confidence 55566689999999999999999999995 54433444444 467988 444554
No 227
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.28 E-value=4.1 Score=43.19 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=39.4
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~ 296 (414)
.+..+.+.-.|+||.+..++..|.++++||..-++.....|+.+.-++.++
T Consensus 450 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 450 EGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred CccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 344556677999999999999999999999988887555666666555553
No 228
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=78.20 E-value=11 Score=38.77 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=46.9
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC-CEEEEEEEEecCCCCCCChHHHHHHHHHHHHHH
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG-NCEVDLFIMQADGKKIVDPSKQDALCSRLRMEL 319 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g-~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l 319 (414)
.|.|.+..+|+||-|+++...|+.+|+|+.+ |.|.... ....=.|+|+-+|.. + ...+.+.+.|+...
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLth--IESRPsk~~~~eY~FFVD~eg~~--~-~~v~~aL~~Lk~~~ 84 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTH--IESRPSKTHPGEYEFFVEFDEAS--D-RKLEGVIEHLRQKA 84 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeE--EecccCCCCCccEEEEEEEecCc--c-HHHHHHHHHHHHhc
Confidence 4667777799999999999999999999996 8764332 222335778755553 2 34555556665533
No 229
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.66 E-value=21 Score=27.14 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.3
Q ss_pred ecCcccHHHHHHHHHHhCCceEEeEEEE
Q 015010 254 GQDHKGLIYDMMRTLKDYNTQVSYGRFF 281 (414)
Q Consensus 254 ~~DrpGLL~~i~~~L~~~~l~I~~A~I~ 281 (414)
.+++||++++|..+|+.+|++|.. |.
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDm--I~ 36 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDL--IT 36 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEE--Ee
Confidence 478899999999999999999995 54
No 230
>PRK06349 homoserine dehydrogenase; Provisional
Probab=77.50 E-value=11 Score=38.83 Aligned_cols=50 Identities=16% Similarity=0.426 Sum_probs=40.0
Q ss_pred CeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEec
Q 015010 109 DVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITD 160 (414)
Q Consensus 109 ~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~ 160 (414)
..+.|.+.. .|+||.|++|++.|.+++.||.+-..... ++....++.++.
T Consensus 347 ~~yylRl~v-~d~pGvLa~I~~~f~~~~vsI~si~q~~~-~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLV-ADKPGVLAKIAAIFAENGISIESILQKGA-GGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEe-cCCcchHHHHHHHHhhcCccEEEEEeccC-CCCceeEEEEEE
Confidence 468899999 99999999999999999999998776553 333455666665
No 231
>PRK06545 prephenate dehydrogenase; Validated
Probab=76.45 E-value=9.7 Score=38.18 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD 149 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~ 149 (414)
+..+.|.|.- +||||-+++|+..|...|+||.+-+|.-..+
T Consensus 288 ~~~~~~~v~v-~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~ 328 (359)
T PRK06545 288 PSFYDLYVDV-PDEPGVIARVTAILGEEGISIENLRILEARE 328 (359)
T ss_pred CcceEEEEeC-CCCCCHHHHHHHHHHHcCCCeecceeeeccC
Confidence 3579999999 9999999999999999999999999966443
No 232
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=72.57 E-value=7.7 Score=40.10 Aligned_cols=53 Identities=9% Similarity=-0.018 Sum_probs=38.1
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNL 396 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~ 396 (414)
.|-++..|+||-|+++-..|+++|+|+.+ |.++....+.|....||| |-+|..
T Consensus 33 SLIFsL~d~pGaL~~vL~vFa~~gINLTh--IESRPsk~~~~e~Y~FfV-D~Eg~~ 85 (464)
T TIGR01270 33 SIIFSLSNVVGDLSKAIAIFQDRHINILH--LESRDSKDGTSKTMDVLV-DVELFH 85 (464)
T ss_pred EEEEECCCCchHHHHHHHHHHHCCCCEEE--EECCcCCCCCCccEEEEE-EEEcCH
Confidence 55566689999999999999999999995 544335444444368888 344543
No 233
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=72.38 E-value=33 Score=25.78 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=23.9
Q ss_pred EEEEE---ecCcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQIL---GQDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~---~~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|++. -.+.||+++++..+|+..|++|..
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~ 34 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDL 34 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 45553 367799999999999999999974
No 234
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=71.39 E-value=1.8e+02 Score=32.72 Aligned_cols=111 Identities=13% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 108 PDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 108 ~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
.+...|+|.+ . .++|+++++..+|+++|+||.-....+ ....+ .|.|.. +..++....|.+.+..
T Consensus 313 ~dvalIsV~G-~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sI-sf~V~~--------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSG-PGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSI-SFCVPQ--------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEc-CCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceE-EEEEeH--------HHHHHHHHHHHHHHHH
Confidence 3577888876 4 678999999999999999997544333 33223 355543 2223333334333321
Q ss_pred ccccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEec---CcccHH
Q 015010 185 TLISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQ---DHKGLI 261 (414)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~---DrpGLL 261 (414)
. +... ....|.+. .+...|.|.+. ++||++
T Consensus 381 e--------------------------l~~~-----------------~~~~i~~~----~~valIsvvG~gm~~~~gv~ 413 (819)
T PRK09436 381 E--------------------------LKEG-----------------LLEPLEVE----ENLAIISVVGDGMRTHPGIA 413 (819)
T ss_pred H--------------------------hccC-----------------CcceEEEe----CCEEEEEEEccCcccCcCHH
Confidence 0 0000 00012222 24567888875 789999
Q ss_pred HHHHHHHHhCCceEEe
Q 015010 262 YDMMRTLKDYNTQVSY 277 (414)
Q Consensus 262 ~~i~~~L~~~~l~I~~ 277 (414)
.++..+|.+.|+||..
T Consensus 414 arif~aL~~~~InI~~ 429 (819)
T PRK09436 414 AKFFSALGRANINIVA 429 (819)
T ss_pred HHHHHHHHHCCCCEEE
Confidence 9999999999999984
No 235
>PRK06349 homoserine dehydrogenase; Provisional
Probab=71.04 E-value=19 Score=37.00 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=35.1
Q ss_pred eEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEe
Q 015010 247 HTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQ 296 (414)
Q Consensus 247 ~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~ 296 (414)
.+.+.+...|+||.|++|+..|.+++++|.+-.-. .+.+ ...++++++
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~-~~~~-~~~~ivivT 395 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQK-GAGG-EGAEIVIVT 395 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEec-cCCC-CceeEEEEE
Confidence 35688899999999999999999999999964322 1122 344555554
No 236
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.68 E-value=32 Score=26.08 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=25.1
Q ss_pred EEEEE--EEecCCcchHHHHHHHHHhCCCeEEE
Q 015010 111 FLLKF--WCFQDRKGLLHDVTEVLCELELTIKR 141 (414)
Q Consensus 111 ~~i~v--~~~~Dr~GLl~~i~~~L~~~glnI~~ 141 (414)
+.|+| ..-++++|++++|..+|+++|+||--
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDm 34 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDL 34 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEE
Confidence 35666 32278899999999999999999985
No 237
>PRK09224 threonine dehydratase; Reviewed
Probab=68.99 E-value=74 Score=33.58 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=70.9
Q ss_pred eeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEEe-cCCEEEEEEEEEcCCCC-C-HHHHHHHHHHhCCCCCcCCc---
Q 015010 20 CTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLSK-DGKWCYLVFWVVGKPTT-R-WSLLKNRLLEVCPSYFSTSR--- 93 (414)
Q Consensus 20 ~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t-dg~~~~d~f~v~~~~g~-~-~~~l~~~l~~~~~~~~~~~~--- 93 (414)
-..+.|.-|||||-|.+++.+|. +-+|+.-...- ..+ .-.+|....-.+. + -+.|.+.|++..-....-+.
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~-~a~V~vgie~~~~~~~~~~i~~~L~~~gy~~~~ls~ne~ 404 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAK-EAHIFVGVQLSRGQEERAEIIAQLRAHGYPVVDLSDDEL 404 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCC-eEEEEEEEEeCChhhHHHHHHHHHHHcCCCeEECCCCHH
Confidence 34788999999999999999998 56666654442 222 2223333333332 2 34566777664433221111
Q ss_pred -cccccccccc-CCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 94 -IYSYRLENQQ-QPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 94 -~~~~~~~~~~-~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
....+..++- .+...+...+.|.- |.|||=|-+...+|. -+.||..-+-
T Consensus 405 ~k~h~r~~~g~~~~~~~~e~~~~~~f-PerpGal~~Fl~~l~-~~~~It~f~Y 455 (504)
T PRK09224 405 AKLHVRYMVGGRPPKPLDERLYRFEF-PERPGALLKFLSTLG-THWNISLFHY 455 (504)
T ss_pred HHHHHHhccCCCCCCCCceEEEEEeC-CCCCCHHHHHHHhcC-CCCeeEEEEE
Confidence 1122222221 12233455667777 999999999888776 6788876665
No 238
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.33 E-value=33 Score=26.04 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=35.7
Q ss_pred cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 255 QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 255 ~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
.+.||+++++..+|+++|++|.. |.+ +. ..=.|.+......+. .+..+.|.+.|++
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDm--I~~---s~-~~isftv~~~~~~~~-~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDL--VST---SE-TNVTVSLDPDPNGLD-PDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEE--EEe---CC-CEEEEEEeCcccccc-hHHHHHHHHHHHh
Confidence 57799999999999999999995 542 22 223345542221122 2356677777655
No 239
>PLN02550 threonine dehydratase
Probab=68.33 E-value=1.8e+02 Score=31.43 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=63.0
Q ss_pred eEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCC-CCHHHHHHHHHHhCCCCCcCCc--c--
Q 015010 21 TVITVNCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPT-TRWSLLKNRLLEVCPSYFSTSR--I-- 94 (414)
Q Consensus 21 ~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g-~~~~~l~~~l~~~~~~~~~~~~--~-- 94 (414)
..+.|.-|||||-|.+++.+|... +|..-... ...+-+...+-+. -.+ -+-+.|...|++..-.....+. .
T Consensus 418 ~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~~~~~~~~~i~~~l~~~g~~~~~l~~~~~~~ 494 (591)
T PLN02550 418 AVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG-VHTEQELQALKKRMESAQLRTVNLTSNDLVK 494 (591)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE-eCCHHHHHHHHHHHHHCCCCeEeCCCChHHh
Confidence 468899999999999999999986 77765554 2222222222222 122 2223355555554333221111 0
Q ss_pred cccccccccCCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEE
Q 015010 95 YSYRLENQQQPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKR 141 (414)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~ 141 (414)
...+..++-......-..+.+.- |.|||=|.+.+.+|... .||..
T Consensus 495 ~~LR~v~g~ra~~~~E~l~~v~f-PErpGAl~~Fl~~lg~~-~nITe 539 (591)
T PLN02550 495 DHLRYLMGGRAIVKDELLYRFVF-PERPGALMKFLDAFSPR-WNISL 539 (591)
T ss_pred hhhhheeccccccCceEEEEEEe-cCcCCHHHHHHHhhCCC-Cceee
Confidence 01111110011112345677777 99999999999988752 44443
No 240
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=68.23 E-value=10 Score=33.38 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=31.9
Q ss_pred eEEEEEEe--cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEE
Q 015010 247 HTLIQILG--QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF 293 (414)
Q Consensus 247 ~t~v~V~~--~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F 293 (414)
+-+++++. .+.||+++.+++.++++|++|.. +++ .+.+...+.|
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irq--i~~-~dpe~~~e~~ 138 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQ--IIS-EDPELQEEPK 138 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEE--Eec-CCcccCCCce
Confidence 34566665 56799999999999999999996 553 2444444544
No 241
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=68.16 E-value=47 Score=25.76 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=48.7
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEE-EEEecCCCCCCCHHHHHHHHHHHHHHHc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDL-FFITDTRELLHTRKRREETIHHLEAVLG 183 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~-f~V~~~~~~~~~~~~~~~i~~~L~~~l~ 183 (414)
.+.+.+.+ .++|+.|.++-++....|+-|.....++..++.-+.+ |.|..++ ..+.|...|+++..
T Consensus 3 qyqldl~a-r~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R-------~~~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSA-RFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR-------SVDLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeec-cCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC-------ChHHHHHHHHHHcc
Confidence 57889999 9999999999999999999999988888655443332 5554322 23556677777653
No 242
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=67.12 E-value=1e+02 Score=34.57 Aligned_cols=104 Identities=16% Similarity=0.074 Sum_probs=62.9
Q ss_pred CCeEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 245 PSHTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 245 ~~~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
.+.+.|+|.+. +.||.++++..+|+++|++|.. |.++ ..+. .-.|.++. ...+.+.+.|++. ..
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~--i~~~-~s~~-sis~~i~~--------~~~~~~~~~l~~~-~~ 381 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLA--VGVH-PDRQ-LLQLAYTS--------EVADSALKLLDDA-AL 381 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEE--EEec-CCCc-EEEEEEeH--------HHHHHHHHHHHhh-cC
Confidence 34567777765 7889999999999999999985 4322 2211 22333331 1223333334332 11
Q ss_pred CcceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceEEE
Q 015010 322 PLRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISIFS 369 (414)
Q Consensus 322 ~~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I~~ 369 (414)
...+.+ .++ -..|.|.|. .+||+..++-.+|.+.++++.+
T Consensus 382 ~~~i~v-~~~-------~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 382 PGELKL-REG-------LALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred CCcEEE-eCC-------eEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 111100 111 126777775 5899999999999999999853
No 243
>PRK09034 aspartate kinase; Reviewed
Probab=66.00 E-value=1.7e+02 Score=30.36 Aligned_cols=32 Identities=16% Similarity=0.408 Sum_probs=26.8
Q ss_pred CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEe
Q 015010 246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
+...|.+.+ .++||+++++..+|+..|+||..
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~m 418 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQM 418 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 345677755 47899999999999999999985
No 244
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=65.58 E-value=3.1e+02 Score=33.19 Aligned_cols=170 Identities=19% Similarity=0.119 Sum_probs=107.2
Q ss_pred CCCCCeeEEEEeCC-CCC--ChhHHHHHHHHHc-CcEEEEEEEE-ecCCEEEEEEEEEcCCC----CCHHHHHHHHHHhC
Q 015010 15 EKPGDCTVITVNCP-DKT--GLGCDLCRIILLF-GLSISRGDLS-KDGKWCYLVFWVVGKPT----TRWSLLKNRLLEVC 85 (414)
Q Consensus 15 ~~~~~~~~v~v~~~-d~~--Gll~~~~~vl~~~-~L~I~~a~i~-tdg~~~~d~f~v~~~~g----~~~~~l~~~l~~~~ 85 (414)
+..+...-+.|+.| |+. -+-.+|-++|.+. +-....-+.. +++..+..-|.+....+ .+.+.|..++.++.
T Consensus 336 D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le~~l~~~~ 415 (1528)
T PF05088_consen 336 DPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALEARLAEAT 415 (1528)
T ss_pred cCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHHHHHHHHH
Confidence 45555555555555 443 4667788887763 3344444433 68888888888877665 56666777776554
Q ss_pred CCCCcC----------C--c-----------c------ccccccc-------------------ccC-CCCCCeEEEEEE
Q 015010 86 PSYFST----------S--R-----------I------YSYRLEN-------------------QQQ-PKPPDVFLLKFW 116 (414)
Q Consensus 86 ~~~~~~----------~--~-----------~------~~~~~~~-------------------~~~-~~~~~~~~i~v~ 116 (414)
.++... . . + +.+...+ -.+ ...++.+.+.++
T Consensus 416 r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy 495 (1528)
T PF05088_consen 416 RSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIY 495 (1528)
T ss_pred CCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEE
Confidence 442110 0 0 0 0000000 001 123457899999
Q ss_pred EecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC--C--eEEEEEEEecCCCCCC-CHHHHHHHHHHHHHHHccc
Q 015010 117 CFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD--G--RVMDLFFITDTRELLH-TRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 117 ~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~--g--~~~d~f~V~~~~~~~~-~~~~~~~i~~~L~~~l~~~ 185 (414)
. +.++..|+++.-+|..+|+.|.+.+-+.... | ..+.-|.+..+.+... ..+.++.+++.+.++..+.
T Consensus 496 ~-~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 496 H-PGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred c-CCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHhcCC
Confidence 9 9999999999999999999999998776432 2 3566688887665532 3455677888888887664
No 245
>PRK08526 threonine dehydratase; Provisional
Probab=63.33 E-value=54 Score=33.51 Aligned_cols=69 Identities=12% Similarity=0.079 Sum_probs=45.0
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCC---CEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRG---NCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g---~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
......+.|.-+||||-|.+++..+...+.||.+-.-...... +.+.=.+.+. ..+++..++|.+.|++
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e-----~~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE-----TKGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999986433211111 1222222333 2245667777777644
No 246
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=62.97 E-value=1.9e+02 Score=29.80 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=29.2
Q ss_pred CeEEEEEEEecCC-cchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 109 DVFLLKFWCFQDR-KGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 109 ~~~~i~v~~~~Dr-~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
+...|+|.+.... +|.++++..+|+++|++|.-....+
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 5667777773344 7999999999999999998654334
No 247
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=62.30 E-value=1e+02 Score=34.95 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=60.5
Q ss_pred CeEEEEEEe---cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 246 SHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 246 ~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+.+.|+|.+ .+.+|.++++...|++++++|.. |.+ .. .-=+|.++.... ....+.++.+.+.|. ..
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~s--se--~sis~~i~~~~~-~~~~~~~~~l~~~l~----~~ 389 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISS--SE--TNVTVSLDPSEN-LVNTDVLAALSADLS----QI 389 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEc--CC--CEEEEEEccccc-cchHHHHHHHHHHHh----hc
Confidence 456777754 36899999999999999999985 542 22 112344432111 101122333333332 11
Q ss_pred cceeeecCCCCceeeeeeeEEEEeC---CccchHHHHHHHHHhCCceE
Q 015010 323 LRVAVVNRGPDAELLVANPVELSGR---GRPLVFYDITLALKILSISI 367 (414)
Q Consensus 323 ~~~~~~~~~~~~~v~~~~~lev~~~---DRpGLL~dIt~~l~~~gl~I 367 (414)
..+.. ... -.+|.|.|. .+||++.++-.+|.+.|+++
T Consensus 390 ~~i~~-~~~-------va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 390 CRVKI-IVP-------CAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred CcEEE-eCC-------eEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 11111 111 126777775 78999999999999987655
No 248
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.19 E-value=43 Score=25.37 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=35.9
Q ss_pred cCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 119 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
++.+|+++++.++|+++|+||--- .+ .. .. -.|.|...... .+.+..++|.+.|+.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI--~~-s~-~~-isftv~~~~~~-~~~~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLV--ST-SE-TN-VTVSLDPDPNG-LDPDVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee-CC-CE-EEEEEeCcccc-cchHHHHHHHHHHHh
Confidence 678999999999999999999843 33 22 11 24666543211 123356667666665
No 249
>PRK08526 threonine dehydratase; Provisional
Probab=61.94 E-value=57 Score=33.33 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=46.0
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCC----CeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPD----GRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~----g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
......+.+.- +||||-|.+++..+.+.+.||.+-.-..... +.+.-.+.+.. .+++..++|.+.|++
T Consensus 323 ~~r~~~~~~~~-~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~-----~~~~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTL-VDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLET-----KGKEHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEc-CCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence 34578999999 9999999999999999999999876644222 22322222322 245566666655543
No 250
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=61.75 E-value=66 Score=24.11 Aligned_cols=63 Identities=14% Similarity=0.086 Sum_probs=38.9
Q ss_pred eEEEEe---CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHccC
Q 015010 341 PVELSG---RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGW 413 (414)
Q Consensus 341 ~lev~~---~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~~ 413 (414)
.|.+.+ .+.||++++|..+|.+.|+++..- .+ .+.. =.|.|...+ ...++. ..+.|.++|..|
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~--s~~~----is~~v~~~~-~~~~~~-~~~~~~~~l~~~ 68 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--ST--SEVS----VSLTLDPTK-NLSDQL-LLDALVKDLSQI 68 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--Ec--CCcE----EEEEEEchh-hccchH-HHHHHHHHHHhC
Confidence 455543 467999999999999999999644 33 2222 146564322 111122 357777777654
No 251
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=61.17 E-value=76 Score=24.64 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=47.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
+.+.+.++++|+.|-++.++-.-.|..|-.-..++..+++.+---|.|+.+ + ..+.|...|++..+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~-R------~~~lL~~QLeKl~D 69 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSD-R------SVDLLTSQLEKLYD 69 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCC-C------ChHHHHHHHHHHcc
Confidence 578999999999999999999999999987555543345555555666422 1 13467777776554
No 252
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=61.10 E-value=57 Score=23.16 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=24.5
Q ss_pred EEEEEe---cCcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILG---QDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|.+.+ ++.||+++++..+|++.|++|..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~ 34 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRA 34 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 455555 47899999999999999999984
No 253
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=58.64 E-value=20 Score=24.44 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=24.3
Q ss_pred EEEEeCC---ccchHHHHHHHHHhCCceEEEEE
Q 015010 342 VELSGRG---RPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 342 lev~~~D---RpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
|.+.+.+ .+|.++++..+|.+.+++|..--
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 4555554 89999999999999999997553
No 254
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=57.42 E-value=17 Score=26.83 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=26.8
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEE
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRV 142 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A 142 (414)
..|+|.+.++.+|.+++|.+.|+++|+||---
T Consensus 2 ~~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 2 TQIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 35667765778999999999999999999865
No 255
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=57.39 E-value=70 Score=23.03 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=24.2
Q ss_pred EEEEEEec---CCcchHHHHHHHHHhCCCeEE
Q 015010 112 LLKFWCFQ---DRKGLLHDVTEVLCELELTIK 140 (414)
Q Consensus 112 ~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~ 140 (414)
.|.+.| . +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG-~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIG-SRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEEC-CCccCCcCHHHHHHHHHHHCCCCEE
Confidence 456666 4 789999999999999999996
No 256
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=56.30 E-value=73 Score=22.93 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=24.4
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEE
Q 015010 249 LIQILGQ---DHKGLIYDMMRTLKDYNTQVS 276 (414)
Q Consensus 249 ~v~V~~~---DrpGLL~~i~~~L~~~~l~I~ 276 (414)
.|.|.+. +.||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 4666664 789999999999999999996
No 257
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.90 E-value=16 Score=25.31 Aligned_cols=28 Identities=21% Similarity=0.064 Sum_probs=24.0
Q ss_pred eCCccchHHHHHHHHHhCCceEEEEEEe
Q 015010 346 GRGRPLVFYDITLALKILSISIFSVEIG 373 (414)
Q Consensus 346 ~~DRpGLL~dIt~~l~~~gl~I~~A~I~ 373 (414)
..+.||++.++..+|.+.|++|......
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 3688999999999999999999765443
No 258
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=54.71 E-value=15 Score=38.83 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=32.5
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
.+||.|.||.|+..+|-..|...++++..-+|..
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 5899999999999999999999999999999977
No 259
>PRK08841 aspartate kinase; Validated
Probab=54.63 E-value=1e+02 Score=31.45 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=55.6
Q ss_pred CeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcce
Q 015010 246 SHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRV 325 (414)
Q Consensus 246 ~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~ 325 (414)
+.+.|++.. +.+.++...|+++|+++.. +.+ ... .-.|++. ....+.+ +..+......
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~--i~~--~~~--~~~~~v~--------~~~~~~~----~~~~~~~i~~ 314 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWN--VIE--EAD--RAQIVIK--------QDACAKL----KLVFDDKIRN 314 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEE--EEe--cCC--cEEEEEC--------HHHHHHH----HHhCcccEEE
Confidence 345566643 3578999999999999985 432 221 1134443 1122222 2222111111
Q ss_pred eeecCCCCceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEE
Q 015010 326 AVVNRGPDAELLVANPVELSGRGRPLVFYDITLALKILSISIF 368 (414)
Q Consensus 326 ~~~~~~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~ 368 (414)
..+ -..|.+.|...||+.+++..+|.+.|++|.
T Consensus 315 ---~~~-------~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~ 347 (392)
T PRK08841 315 ---SES-------VSLLTLVGLEANGMVEHACNLLAQNGIDVR 347 (392)
T ss_pred ---eCC-------EEEEEEECCCChHHHHHHHHHHHhCCCCEE
Confidence 011 127888898899999999999999999995
No 260
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=54.22 E-value=22 Score=24.17 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=23.3
Q ss_pred EEEEecC---cccHHHHHHHHHHhCCceEEe
Q 015010 250 IQILGQD---HKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 250 v~V~~~D---rpGLL~~i~~~L~~~~l~I~~ 277 (414)
|+|.+.+ .||.++++..+|++++++|..
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~ 33 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDM 33 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 4444444 899999999999999999985
No 261
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.99 E-value=76 Score=22.43 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=34.5
Q ss_pred CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHH
Q 015010 348 GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKIL 410 (414)
Q Consensus 348 DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L 410 (414)
++||+.++|-.+|.++|+++..- +| ++. -=.|++...+. . + .+++|.++|
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i--~t---~~~---~is~~v~~~~~---~-~-~~~~l~~~l 61 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLI--PT---SEN---SVTLYLDDSLL---P-K-KLKRLLAEL 61 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEE--ec---CCC---EEEEEEehhhh---h-H-HHHHHHHhh
Confidence 78999999999999999999865 34 222 23688865432 1 2 356666655
No 262
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.98 E-value=64 Score=22.84 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=21.2
Q ss_pred cCcccHHHHHHHHHHhCCceEEe
Q 015010 255 QDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 255 ~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.++||+.+++..+|+++++++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~ 33 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDL 33 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEE
Confidence 47799999999999999999995
No 263
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=53.98 E-value=60 Score=27.77 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=29.1
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
.+.+.-.||.|.|+++-.++++.++||..-.=+-
T Consensus 74 TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~i 107 (150)
T COG4492 74 TLSLSLEDRVGILSDVLDVIAREEINVLTIHQTI 107 (150)
T ss_pred EEEEEEhhhhhhHHHHHHHHHHhCCcEEEEeccc
Confidence 6788889999999999999999999998654433
No 264
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=53.43 E-value=17 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=22.9
Q ss_pred CCccchHHHHHHHHHhCCceEEEEEE
Q 015010 347 RGRPLVFYDITLALKILSISIFSVEI 372 (414)
Q Consensus 347 ~DRpGLL~dIt~~l~~~gl~I~~A~I 372 (414)
.|+||.+++|..+|.+.|++|...-.
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 68899999999999999999985533
No 265
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=51.32 E-value=85 Score=22.19 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=25.7
Q ss_pred EEEEEEe--cCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 112 LLKFWCF--QDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 112 ~i~v~~~--~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
.|.+.|. ++.+|+++++..+|++.|++|.--..
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4555551 47899999999999999999975433
No 266
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=50.98 E-value=3.1e+02 Score=28.54 Aligned_cols=107 Identities=17% Similarity=0.233 Sum_probs=65.1
Q ss_pred CCeEEEEEEEecCCc--chHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccc
Q 015010 108 PDVFLLKFWCFQDRK--GLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKT 185 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~--GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~ 185 (414)
.+.+.|++.+..+.+ |.+++|..+|+++|+||.---... +... -.|.|... ...+....|.+.....
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~--~~~~-i~~~v~~~--------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSI--SEVS-ISFTVPES--------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEecc--CCCe-EEEEEchh--------hHHHHHHHHHHHHhhh
Confidence 456778887644444 999999999999999997432222 2222 24666532 2223333333333210
Q ss_pred cccccccCCCCccccccCCCCCCchhhHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEe---cCcccHHH
Q 015010 186 LISCEIELPGPEITACCHGSSFLPSAITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILG---QDHKGLIY 262 (414)
Q Consensus 186 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~---~DrpGLL~ 262 (414)
. . .+.++ .+...|.+.+ +..||..+
T Consensus 374 ~----------------------------------------------~--~v~~~----~~~a~vsiVG~gm~~~~gvaa 401 (447)
T COG0527 374 L----------------------------------------------A--EVEVE----EGLALVSIVGAGMRSNPGVAA 401 (447)
T ss_pred c----------------------------------------------c--eEEee----CCeeEEEEEccccccCcCHHH
Confidence 0 0 11111 1234555555 56789999
Q ss_pred HHHHHHHhCCceEEe
Q 015010 263 DMMRTLKDYNTQVSY 277 (414)
Q Consensus 263 ~i~~~L~~~~l~I~~ 277 (414)
++..+|++.++||..
T Consensus 402 ~~f~aL~~~~ini~~ 416 (447)
T COG0527 402 RIFQALAEENINIIM 416 (447)
T ss_pred HHHHHHHhCCCcEEE
Confidence 999999999999995
No 267
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.59 E-value=89 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=26.5
Q ss_pred EEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 112 LLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 112 ~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
.|.+.| . +++|.++++..+|++.|++|.--...+
T Consensus 3 ~isvvg-~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVG-KHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEEC-CCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 455555 4 689999999999999999997554433
No 268
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=50.27 E-value=1.4e+02 Score=30.63 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=42.3
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEE-EEecCCCCCCChHHHHHHHHHHHH
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLF-IMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F-~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.....+.+.-+||||=|.+++..+...+.||.+-+-.. ..+.....++ .+. ..+++..+.+.+.|++
T Consensus 322 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~-~~~~~~~~v~v~iE-----~~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 322 EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTK-KSNRETGPALIGIE-----LNDKEDFAGLLERMAA 390 (409)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeee-cCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 345678999999999999999997777777998633321 1221122332 333 1234556667666644
No 269
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=49.97 E-value=33 Score=23.85 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.8
Q ss_pred eEEEEeC---CccchHHHHHHHHHhCCceEEEE
Q 015010 341 PVELSGR---GRPLVFYDITLALKILSISIFSV 370 (414)
Q Consensus 341 ~lev~~~---DRpGLL~dIt~~l~~~gl~I~~A 370 (414)
.|.+.+. +++|+++++..+|.+.++++..-
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i 34 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMI 34 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEE
Confidence 4566554 78999999999999999999654
No 270
>PRK14636 hypothetical protein; Provisional
Probab=48.89 E-value=2e+02 Score=25.82 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
.+-+...+..++..+|+.+.+..+... .+..++-+|+=.+++..+ +-+.++.+.+.|...|...
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~-~~~~~lrV~ID~~~~ggV-~lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGG-KSDPTLQIMAERPDTRQL-VIEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcC-CCCeEEEEEEECCCCCCc-CHHHHHHHHHHHHHHhccC
Confidence 345667788889999999999887632 344566655533433333 3567888988888888743
No 271
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=48.03 E-value=1.7e+02 Score=29.97 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS 145 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~ 145 (414)
.....+.+.- +||||=|.+++..+...+.||..-+-.
T Consensus 323 ~r~~~~~v~i-pdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 323 GLKHYFIVRF-PQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CCEEEEEEEe-CCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4577899999 999999999999777788899965544
No 272
>PRK09084 aspartate kinase III; Validated
Probab=48.02 E-value=3.4e+02 Score=28.15 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCeEEEEEEEec---CCcchHHHHHHHHHhCCCeEEEE
Q 015010 108 PDVFLLKFWCFQ---DRKGLLHDVTEVLCELELTIKRV 142 (414)
Q Consensus 108 ~~~~~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A 142 (414)
.+...|+|.+ . +.+|.++++..+|+++|+||.--
T Consensus 304 ~~i~lItv~~-~~~~~~~g~~a~if~~l~~~~I~Vd~I 340 (448)
T PRK09084 304 RNQTLLTLHS-LNMLHARGFLAEVFGILARHKISVDLI 340 (448)
T ss_pred CCEEEEEEec-CCCCccccHHHHHHHHHHHcCCeEEEE
Confidence 3567888876 4 68899999999999999999854
No 273
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=47.80 E-value=1.9e+02 Score=34.85 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=62.4
Q ss_pred CeEEEEec--CCCCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeC--C-CEEEEEEEEe-cCCCCCCChHH
Q 015010 234 PVSIAVDN--SFSPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPR--G-NCEVDLFIMQ-ADGKKIVDPSK 307 (414)
Q Consensus 234 ~~~V~v~~--~~~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~--g-~~~~D~F~v~-~~g~~~~~~~~ 307 (414)
+..+.+.. ...++...+.++...+|..|+++.-+|..+|+.|.+.+-+.-+. | ....--|++. +.+..+...+.
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~ 553 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDI 553 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHH
Confidence 34454443 33446789999999999999999999999999999876543222 2 2355567775 55554544556
Q ss_pred HHHHHHHHHHHHcCC
Q 015010 308 QDALCSRLRMELLRP 322 (414)
Q Consensus 308 ~~~l~~~L~~~l~~~ 322 (414)
.+.+++.+.+...+.
T Consensus 554 ~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 554 RERFEEAFEAVWNGR 568 (1528)
T ss_pred HHHHHHHHHHHhcCC
Confidence 677888887777665
No 274
>PRK14634 hypothetical protein; Provisional
Probab=47.68 E-value=1.9e+02 Score=25.29 Aligned_cols=63 Identities=10% Similarity=0.025 Sum_probs=43.7
Q ss_pred ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 258 KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 258 pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+.+..-+..++..+|+.+.+..+... .+..++-+|+=.++|..++ -+.++.+.+.|...|+..
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~-~~~~~lrV~ID~~~g~~v~-lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTH-LQPMTLQVQIRRSSGSDVS-LDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeC-CCCcEEEEEEECCCCCccc-HHHHHHHHHHHHHHhccc
Confidence 45666777889999999999887632 3445666555336664343 467888888888888743
No 275
>PRK12483 threonine dehydratase; Reviewed
Probab=47.25 E-value=3.8e+02 Score=28.49 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=69.6
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEE-EecCCCCCCChHHH-HHHHHHHHHHHcC
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI-MQADGKKIVDPSKQ-DALCSRLRMELLR 321 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~-v~~~g~~~~~~~~~-~~l~~~L~~~l~~ 321 (414)
+.....+.|.-+||||-|.+++..|... ||..-.-. ..+.....+++ +.- .+++.. ++|.+.|++ .
T Consensus 342 ~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~--~~~~~~~~v~v~ie~-----~~~~~~~~~i~~~l~~---~ 409 (521)
T PRK12483 342 EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYR--YADAREAHLFVGVQT-----HPRHDPRAQLLASLRA---Q 409 (521)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEE--ecCCCeeEEEEEEEe-----CChhhhHHHHHHHHHH---C
Confidence 3455678999999999999999999988 66643322 12222234443 331 123343 566666643 1
Q ss_pred CcceeeecC-------------CCCceeeeeeeEEEEeCCccchHHHHHHHHHh-CCceEEEEEEe
Q 015010 322 PLRVAVVNR-------------GPDAELLVANPVELSGRGRPLVFYDITLALKI-LSISIFSVEIG 373 (414)
Q Consensus 322 ~~~~~~~~~-------------~~~~~v~~~~~lev~~~DRpGLL~dIt~~l~~-~gl~I~~A~I~ 373 (414)
...+...+. |-.+.+.-...+-+.=+.|||=|.+..++|.. .+|+-++=+..
T Consensus 410 g~~~~dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~YR~~ 475 (521)
T PRK12483 410 GFPVLDLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFHYRNH 475 (521)
T ss_pred CCCeEECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeeeecCC
Confidence 111110000 11112222347788889999999999999987 47777655543
No 276
>PRK14646 hypothetical protein; Provisional
Probab=45.76 E-value=2.1e+02 Score=25.10 Aligned_cols=62 Identities=8% Similarity=0.146 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 259 GLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 259 GLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
.+...+..++..+|+.+.+..+... .+..++-+|+=.++|..+ +-+.++.+.+.|.+.|+..
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~-~~~~~LrV~IDk~~g~gV-tldDC~~vSr~is~~LD~~ 69 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTN-QNPIVIKIIIKKTNGDDI-SLDDCALFNTPASEEIENS 69 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeC-CCCeEEEEEEECCCCCCc-cHHHHHHHHHHHHHHhCcC
Confidence 4667788899999999999888732 444566555533444334 3467888888888888643
No 277
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.30 E-value=70 Score=24.60 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=36.5
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHc
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELL 320 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~ 320 (414)
..|.+.++..+|.++|+++.+ +- .| .|.|.+-.+...+.+ +..+.+.+.|++.+.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh--~P---SG---ID~~Siii~~~~~~~-~~~~~i~~~i~~~~~ 68 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEH--MP---SG---IDDISIIIRDNQLTD-EKEQKILAEIKEELH 68 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEee--ec---CC---CccEEEEEEccccch-hhHHHHHHHHHHhcC
Confidence 469999999999999999996 64 22 244544322233443 356677777777664
No 278
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=42.98 E-value=61 Score=32.78 Aligned_cols=59 Identities=17% Similarity=0.058 Sum_probs=43.5
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHcc
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMG 412 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~ 412 (414)
.|+|++.||.||..++-..|...+|++..-+|.- .| + .|+-=+ .++.+ ..++++.+|.+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~--~~-~------IYln~p---~l~~~-~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP--IG-R------IYLNFP---ELEFE-SFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC--CC-e------EEEecc---ccCHH-HHHHHHHHHhc
Confidence 5899999999999999999999999999988844 33 3 566333 23333 45666666543
No 279
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.93 E-value=1.2e+02 Score=21.51 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=24.3
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQ---DHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|.+.+. ++||+++++..+|++.|++|..
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~ 34 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEM 34 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEE
Confidence 4555554 6799999999999999999985
No 280
>PRK08639 threonine dehydratase; Validated
Probab=41.75 E-value=2e+02 Score=29.40 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=30.9
Q ss_pred CCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE
Q 015010 107 PPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS 145 (414)
Q Consensus 107 ~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~ 145 (414)
......+.+.- +||||-|.+++..+...+.||..-+-.
T Consensus 333 ~~r~~~~~v~i-pdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 333 EGLKHYFIVNF-PQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred cCCEEEEEEEe-CCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 34578899999 999999999999777777799976543
No 281
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=41.60 E-value=1.2e+02 Score=22.83 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 256 DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
-.||+++++...|+++|+||.. |.+ +. .-=.|.+... . +.+ +..+.|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~--I~~---s~-~~isftv~~~-~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDL--IST---SE-VHVSMALHME-N-AED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEE--EEe---CC-CEEEEEEehh-h-cCh-HHHHHHHHHHHH
Confidence 3489999999999999999995 552 22 2223444322 1 222 255666666655
No 282
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=41.55 E-value=1.3e+02 Score=21.65 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=23.1
Q ss_pred EEEEEec--CcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQ--DHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~--DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|.+.+. ..||++.++..+|++.|++|.-
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~ 33 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQM 33 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 3445543 4589999999999999999984
No 283
>PRK14645 hypothetical protein; Provisional
Probab=41.34 E-value=2.5e+02 Score=24.66 Aligned_cols=63 Identities=17% Similarity=0.045 Sum_probs=43.3
Q ss_pred ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 258 KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 258 pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
.-+-..+..++..+|+.+.+..+... .+..++-+|+=.++|..++ -+.++.+.+.|.+.|+..
T Consensus 9 ~~i~~li~~~~~~~G~elvdve~~~~-~~~~ilrV~ID~~~~~~v~-lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 9 PDLQQLAEGALEPLGYEVLEVQVQRS-GGKRIVLVRIDRKDEQPVT-VEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeC-CCCeEEEEEEECCCCCCcC-HHHHHHHHHHHHHHhccc
Confidence 34667778899999999999887632 3445665555334443343 467888989998888643
No 284
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=41.12 E-value=44 Score=35.38 Aligned_cols=34 Identities=21% Similarity=0.582 Sum_probs=32.2
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
.++|.| .||.|+..+|...|...++|+..-.|..
T Consensus 2 rl~~~~-~dr~g~~~~~l~~~~~~~~~~~~~e~~~ 35 (520)
T PRK10820 2 RLEVFC-EDRLGLTRELLDLLVLRSIDLRGIEIDP 35 (520)
T ss_pred eEEEEe-eccccHHHHHHHHHHhcCCCccEEEEcC
Confidence 589999 9999999999999999999999999966
No 285
>PRK08639 threonine dehydratase; Validated
Probab=40.67 E-value=2.1e+02 Score=29.29 Aligned_cols=68 Identities=10% Similarity=0.196 Sum_probs=41.3
Q ss_pred CCCeEEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEE-EecCCCCCCChHHHHHHHHHHHH
Q 015010 244 SPSHTLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFI-MQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 244 ~~~~t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~-v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.....+.+.-+||||-|.+++..+...+-||..-+-... .+.....++. +. ..+++..+++.+.|++
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~-~~~~~~~v~v~iE-----~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKK-NNRETGPVLVGIE-----LKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeec-CCCCceEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence 4456789999999999999999966666668886332211 1211223332 23 2234566777776644
No 286
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=40.47 E-value=39 Score=27.14 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 352 VFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 352 LL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
=+.++-+-|.+.|+.+...-... ..+..+....||+.|++|+.+
T Consensus 77 dv~~~~~~l~~~g~~~~~~p~~~--~~~~~~~~~~~~~~DPdG~~i 120 (125)
T cd08357 77 EFDALAERLEAAGVEFLIEPYTR--FEGQPGEQETFFLKDPSGNAL 120 (125)
T ss_pred HHHHHHHHHHHCCCcEecCccee--ccCCcCceeEEEEECCCCCEE
Confidence 47888899999999987643332 111111335699999999876
No 287
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=39.86 E-value=64 Score=25.46 Aligned_cols=47 Identities=4% Similarity=-0.094 Sum_probs=33.2
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
.+-+...| +....+.|.+.|+++....... .+. ...||+.|++|..+
T Consensus 64 ~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~--~~~----~~~~~~~DPdG~~~ 110 (114)
T cd07247 64 LVYFAVDD----VDAAAARVEAAGGKVLVPPTDI--PGV----GRFAVFADPEGAVF 110 (114)
T ss_pred EEEEEeCC----HHHHHHHHHHCCCEEEeCCccc--CCc----EEEEEEECCCCCEE
Confidence 44555666 6778888999999988654333 222 23799999999876
No 288
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=38.81 E-value=3.6e+02 Score=28.42 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=65.9
Q ss_pred CeeEEEEeCCCCCChhHHHHHHHHHcCcEEEEEEEE-ecCCEEEEEEEEEcCCCC-CHHHHHHHHHHhCCCCCcCCc---
Q 015010 19 DCTVITVNCPDKTGLGCDLCRIILLFGLSISRGDLS-KDGKWCYLVFWVVGKPTT-RWSLLKNRLLEVCPSYFSTSR--- 93 (414)
Q Consensus 19 ~~~~v~v~~~d~~Gll~~~~~vl~~~~L~I~~a~i~-tdg~~~~d~f~v~~~~g~-~~~~l~~~l~~~~~~~~~~~~--- 93 (414)
.-..+.|.-|||||-|.+++.+|.. -+|+.-... ++.+-+. +|....-.++ +-+.|...|++..-....-+.
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~-v~vgie~~~~~~~~~l~~~L~~~Gy~~~dls~ne~ 400 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAH-IFVGVQLSNPQERQEILARLNDGGYSVVDLTDDEL 400 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEE-EEEEEEeCCHHHHHHHHHHHHHcCCCeEECCCCHH
Confidence 3346889999999999999999997 366655544 3333222 3333332232 223455566554433221111
Q ss_pred -cccccccccc-CCCCCCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 94 -IYSYRLENQQ-QPKPPDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 94 -~~~~~~~~~~-~~~~~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
....+..++- .+...+--...+.- |-|||-|-+--.+| .-+.||.--+-
T Consensus 401 ~k~h~r~~~g~~~~~~~~e~~~~~~f-perpgaL~~Fl~~l-~~~~~It~f~Y 451 (499)
T TIGR01124 401 AKLHVRYMVGGRPPHVENERLYSFEF-PERPGALLRFLNTL-QGYWNISLFHY 451 (499)
T ss_pred HHHHHHhccCCCCCCCCCceEEEEeC-CCCccHHHHHHHhc-CCCCceeeEEE
Confidence 1122223321 22333455667777 99999877765544 23456655444
No 289
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.59 E-value=63 Score=25.64 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=34.6
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+-+...++ +..+.+.|.+.|+.+....... .|.. +....||+.|++|..+.
T Consensus 71 i~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~--~~~~-~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 71 LCLITEPP---IDELVAHLEAHGVPIEEGPVPR--TGAR-GPITSVYFRDPDGNLIE 121 (125)
T ss_pred EEEEeccc---HHHHHHHHHHCCceeecCcccc--cCCC-CCccEEEEECCCCCEEE
Confidence 33444444 7888999999999987665543 2221 12357999999998764
No 290
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.87 E-value=73 Score=22.16 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=23.7
Q ss_pred EEEEe---CCccchHHHHHHHHHhCCceEEEE
Q 015010 342 VELSG---RGRPLVFYDITLALKILSISIFSV 370 (414)
Q Consensus 342 lev~~---~DRpGLL~dIt~~l~~~gl~I~~A 370 (414)
|.+.+ .+.||++.++..+|.+.++++..-
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i 34 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMI 34 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence 45554 367999999999999999999754
No 291
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=35.57 E-value=1.6e+02 Score=22.14 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 120 DRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 120 Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
-.+|+++++..+|+++|+||--- .+ .. ..+ .|.|... .. ..+.+++|.+.|++
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I--~~-s~-~~i-sftv~~~--~~-~~~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLI--ST-SE-VHV-SMALHME--NA-EDTNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEE--Ee-CC-CEE-EEEEehh--hc-ChHHHHHHHHHHHH
Confidence 45899999999999999999853 23 22 112 3555432 11 12255666666665
No 292
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=35.01 E-value=75 Score=25.16 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
|....+.|++.|+.+...--.+ ..+ ....||++|++|..+
T Consensus 87 l~~~~~~l~~~g~~~~~~~~~~--~~~---~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 87 LDAAYERLKAQGVEIVEEPDRY--YFG---SGYSFYFRDPDGNLI 126 (128)
T ss_dssp HHHHHHHHHHTTGEEEEEEEEH--STT---CEEEEEEEETTSEEE
T ss_pred HHHHHHHHhhcCccEEecCCCC--CCC---CEEEEEEECCCCCEE
Confidence 4667788999999999775444 333 344679999999754
No 293
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.75 E-value=38 Score=26.09 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.7
Q ss_pred cCCcchHHHHHHHHHhCCCeEEEE
Q 015010 119 QDRKGLLHDVTEVLCELELTIKRV 142 (414)
Q Consensus 119 ~Dr~GLl~~i~~~L~~~glnI~~A 142 (414)
++.||..++|..+|+++|+||---
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI 35 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV 35 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE
Confidence 678999999999999999999843
No 294
>PRK00907 hypothetical protein; Provisional
Probab=34.68 E-value=1.9e+02 Score=23.07 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=43.1
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEE--EeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFF--AKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLR 316 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~--t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~ 316 (414)
+.+.|.+.++++|...|..++..+.-......+. .++.|.+..=++.+. .++.++++.|-+.|.
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~-----ats~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFR-----AESREQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHh
Confidence 5799999999999999999999887655444453 234664444444444 234566666666553
No 295
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=34.26 E-value=73 Score=24.51 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=31.2
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+-+...| +....+.|.+.|+.+....-.- .| ...||+.|++|..+
T Consensus 68 ~~~~v~d----~~~~~~~l~~~g~~~~~~~~~~--~~-----~~~~~~~DP~G~~i 112 (114)
T cd07245 68 IAFRVDD----LDAFRARLKAAGVPYTESDVPG--DG-----VRQLFVRDPDGNRI 112 (114)
T ss_pred EEEEeCC----HHHHHHHHHHcCCCcccccCCC--CC-----ccEEEEECCCCCEE
Confidence 4444455 7788899999999987543211 22 33689999999875
No 296
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=34.26 E-value=81 Score=21.92 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=24.2
Q ss_pred EEEEe---CCccchHHHHHHHHHhCCceEEEEE
Q 015010 342 VELSG---RGRPLVFYDITLALKILSISIFSVE 371 (414)
Q Consensus 342 lev~~---~DRpGLL~dIt~~l~~~gl~I~~A~ 371 (414)
|.+.+ .+.||++.++...|.+.|+++...-
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 45554 3679999999999999999997553
No 297
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.74 E-value=1.7e+02 Score=20.52 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=25.6
Q ss_pred EEEEEEe--cCCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 112 LLKFWCF--QDRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 112 ~i~v~~~--~Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
.|.+.|. ++.+|+++++...|++.|++|.--..
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4555551 37789999999999999999975444
No 298
>PRK05925 aspartate kinase; Provisional
Probab=33.21 E-value=5.7e+02 Score=26.48 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=70.7
Q ss_pred CeEEEEEEec-CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcc
Q 015010 246 SHTLIQILGQ-DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLR 324 (414)
Q Consensus 246 ~~t~v~V~~~-DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~ 324 (414)
+.+.+++.+. ..+|.+.++...|+++|++|.. +.+ + . .-=.|.++... . .. ...+.|...+..-..
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~--i~s-~-~--~sis~~i~~~~--~-~~----~~~~~l~~~l~~~~~ 365 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGL--VMA-Q-N--LGVYFTIDDDD--I-SE----EYPQHLTDALSAFGT 365 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEE--Eec-c-C--CEEEEEEechh--c-cH----HHHHHHHHHhcCCce
Confidence 3456666433 2478899999999999999974 332 2 2 12235554211 1 11 122233333332111
Q ss_pred eeeecCCCCceeeeeeeEEEEeCC--ccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHH
Q 015010 325 VAVVNRGPDAELLVANPVELSGRG--RPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKI 402 (414)
Q Consensus 325 ~~~~~~~~~~~v~~~~~lev~~~D--RpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~ 402 (414)
+... .+ -..|.|.|.+ ++|+...+..+|.+.|++|.. |++ ++. .+ .|.|...+. ++.
T Consensus 366 i~~~-~~-------~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~--i~~---s~~--~i-s~vV~~~d~-----~~a 424 (440)
T PRK05925 366 VSCE-GP-------LALITMIGAKLASWKVVRTFTEKLRGYQTPVFC--WCQ---SDM--AL-NLVVNEELA-----VAV 424 (440)
T ss_pred EEEE-CC-------EEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE--EEC---CCc--eE-EEEEehHHH-----HHH
Confidence 1100 01 1256666652 378999999999999999965 333 444 33 466643322 123
Q ss_pred HHHHHHHHc
Q 015010 403 EDLVRKILM 411 (414)
Q Consensus 403 ~~~i~~~L~ 411 (414)
+..|..++-
T Consensus 425 v~~LH~~f~ 433 (440)
T PRK05925 425 TELLHNDYV 433 (440)
T ss_pred HHHHHHHHh
Confidence 455555543
No 299
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=33.21 E-value=95 Score=24.05 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+.++-+.+.++|+.+...-... ..|. ..||+.|++|+.+
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~-~~g~-----~~~~~~DPdG~~i 105 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDD-PWGQ-----RSFYFIDPDGNRI 105 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEE-TTSE-----EEEEEE-TTS-EE
T ss_pred HHHHHHHHHHCCCeEeeCCEEc-CCCe-----EEEEEECCCCCEE
Confidence 5667778899999987643333 1232 3799999999864
No 300
>PRK00907 hypothetical protein; Provisional
Probab=33.11 E-value=2.1e+02 Score=22.88 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=42.3
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEE--eCCCCe-EEEEEEEecCCCCCCCHHHHHHHHHHHH
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVS--TTPDGR-VMDLFFITDTRELLHTRKRREETIHHLE 179 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~--T~~~g~-~~d~f~V~~~~~~~~~~~~~~~i~~~L~ 179 (414)
.+-+.|.| .++++|...|..++..+.-+.-...+. .+.+|+ .--.+.|.- .+.++++.|-+.|.
T Consensus 17 ~fpiKVmG-~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-----ts~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMG-TAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-----ESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEE-cCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence 58899999 999999999999999988766555553 224454 333344443 24555555544443
No 301
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=32.70 E-value=1.4e+02 Score=22.38 Aligned_cols=48 Identities=25% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccchH----HHHHHHHHhCCce-EEEEEEecceeCceeeEEEEEEEEcCCCCCCCchHHHHHHHHHHccC
Q 015010 349 RPLVF----YDITLALKILSIS-IFSVEIGRYMIHDREWEVYRILLDEADGNLEPRNKIEDLVRKILMGW 413 (414)
Q Consensus 349 RpGLL----~dIt~~l~~~gl~-I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~~~~~~~~i~~~L~~~ 413 (414)
|||++ ..|.++|.++|++ +..++++. .|++ +| .+.+ ..+.+-+.|+.|
T Consensus 10 k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k-----------~~~l---~~--~~~~-~~~~i~~~lL~N 62 (73)
T PRK06423 10 KPGVEDPEALTILKNLNILGYNGIKGVSISK-----------VYYF---DA--DSYN-EVDEIAGKILTN 62 (73)
T ss_pred CCCCcChHHHHHHHHHHHcCCCCcceEEEEE-----------EEEE---ec--CCHH-HHHHHHHHhcCC
Confidence 67776 4577778889986 77665555 4666 33 3344 467787777655
No 302
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=32.14 E-value=3.2e+02 Score=28.79 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCeEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 108 PDVFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 108 ~~~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
.....+.|.- |||||-|.+++.+|.. .||..-+-.-...+.+ .+|..-.- .+++..++|.+.|++
T Consensus 323 ~re~~l~V~i-PerPGal~~f~~~i~~--~nItef~yr~~~~~~a-~v~vgie~----~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTI-PEQPGSFLKFCELLGN--RNITEFNYRYADRKDA-HIFVGVQL----SNPQERQEILARLND 387 (499)
T ss_pred CCEEEEEEEe-CCCCCHHHHHHHHhhh--cceEEEEEEecCCCeE-EEEEEEEe----CCHHHHHHHHHHHHH
Confidence 3477888888 9999999999999997 5777655543233332 23332221 245566777666655
No 303
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.81 E-value=6.1e+02 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=31.9
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=-.=+-+=-+.|+.+..+-++- .|++
T Consensus 199 pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~g--lg~g 236 (448)
T PRK12331 199 PLEVHTHATSGIAEMTYLKAIEAGADIIDTAISP--FAGG 236 (448)
T ss_pred eEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccc--cCCC
Confidence 7899999999997777766679999999999987 6665
No 304
>PLN02550 threonine dehydratase
Probab=31.78 E-value=2.6e+02 Score=30.16 Aligned_cols=125 Identities=10% Similarity=0.162 Sum_probs=69.7
Q ss_pred eEEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHccccccc
Q 015010 110 VFLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGKTLISC 189 (414)
Q Consensus 110 ~~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~ 189 (414)
...+.+.- +||||-|.+++.+|... ||.+-.-.-..-+.+--.+.|.. .+++..++|.+.|++. +.
T Consensus 417 ~~~~~v~i-pd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-----~~~~~~~~i~~~l~~~--g~---- 482 (591)
T PLN02550 417 EAVLATFM-PEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-----HTEQELQALKKRMESA--QL---- 482 (591)
T ss_pred EEEEEEEc-CCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-----CCHHHHHHHHHHHHHC--CC----
Confidence 57788888 99999999999999986 77765443323333322233322 2455666776666552 11
Q ss_pred cccCCCCccccccCCCCCCchh-hHhhhhccCCCCCCCCCCCCCCCeEEEEecCCCCCeEEEEEEecCcccHHHHHHHHH
Q 015010 190 EIELPGPEITACCHGSSFLPSA-ITDEMFSLELPAEQPNGFLASAPVSIAVDNSFSPSHTLIQILGQDHKGLIYDMMRTL 268 (414)
Q Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~V~v~~~~~~~~t~v~V~~~DrpGLL~~i~~~L 268 (414)
.. .++ +.-+-. .|-+.. .++| ..+ ..--.+.+.=+.|||-|.+.+.+|
T Consensus 483 --~~--~~l-------~~~~~~~~~LR~v----~g~r---------a~~-------~~E~l~~v~fPErpGAl~~Fl~~l 531 (591)
T PLN02550 483 --RT--VNL-------TSNDLVKDHLRYL----MGGR---------AIV-------KDELLYRFVFPERPGALMKFLDAF 531 (591)
T ss_pred --Ce--EeC-------CCChHHhhhhhhe----eccc---------ccc-------CceEEEEEEecCcCCHHHHHHHhh
Confidence 00 011 000100 010100 0000 011 122367788899999999999988
Q ss_pred Hh-CCceEEeEE
Q 015010 269 KD-YNTQVSYGR 279 (414)
Q Consensus 269 ~~-~~l~I~~A~ 279 (414)
.. .++.-++=+
T Consensus 532 g~~~nITeF~YR 543 (591)
T PLN02550 532 SPRWNISLFHYR 543 (591)
T ss_pred CCCCceeeEEee
Confidence 87 466666544
No 305
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=30.27 E-value=4.9e+02 Score=24.83 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=63.9
Q ss_pred CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCce
Q 015010 256 DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAE 335 (414)
Q Consensus 256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 335 (414)
--|..+.++++.+.+.|.+... +. .|.| ...|.+...+.+.+++.+.. +
T Consensus 148 ~~~~~~~~~~~~~~~~g~~~i~--l~-DT~G---------------~~~P~~v~~lv~~l~~~~~~---~---------- 196 (273)
T cd07941 148 ANPEYALATLKAAAEAGADWLV--LC-DTNG---------------GTLPHEIAEIVKEVRERLPG---V---------- 196 (273)
T ss_pred CCHHHHHHHHHHHHhCCCCEEE--Ee-cCCC---------------CCCHHHHHHHHHHHHHhCCC---C----------
Confidence 3488899999999998876532 22 2333 23477777777777665521 1
Q ss_pred eeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 336 LLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 336 v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=..=+-+--+.|+.+..+-+.- .|++
T Consensus 197 -----~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~G--lGer 234 (273)
T cd07941 197 -----PLGIHAHNDSGLAVANSLAAVEAGATQVQGTING--YGER 234 (273)
T ss_pred -----eeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccc--cccc
Confidence 7899999999987776666667899999999998 8887
No 306
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=30.02 E-value=3.1e+02 Score=31.53 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=48.5
Q ss_pred CeeEEEE---eCCCCCChhHHHHHHHHHcCcEEEEEEEEe-cCCEEEEEEEEEcCCCC--CHHHHHHHHHH
Q 015010 19 DCTVITV---NCPDKTGLGCDLCRIILLFGLSISRGDLSK-DGKWCYLVFWVVGKPTT--RWSLLKNRLLE 83 (414)
Q Consensus 19 ~~~~v~v---~~~d~~Gll~~~~~vl~~~~L~I~~a~i~t-dg~~~~d~f~v~~~~g~--~~~~l~~~l~~ 83 (414)
+...+.| ..+..+|+|+.+..++.-+||.+.++|+-+ -+|..+-.|.|.+..+. ...-|.++++.
T Consensus 229 ~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~~~~~~~ 299 (1002)
T PTZ00324 229 VSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSIEDRASL 299 (1002)
T ss_pred cEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccHHHHHHh
Confidence 4445555 456668999999999999999999999975 35578889999987662 23346666665
No 307
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=29.50 E-value=1.9e+02 Score=19.74 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=24.1
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQ---DHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|++.+. +++|+++++...|++.++++..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~ 33 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIM 33 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEE
Confidence 3555444 7899999999999999999985
No 308
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.06 E-value=65 Score=24.75 Aligned_cols=56 Identities=18% Similarity=0.076 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC--chHHHHHHHHHHc
Q 015010 347 RGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP--RNKIEDLVRKILM 411 (414)
Q Consensus 347 ~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~--~~~~~~~i~~~L~ 411 (414)
.+.||++++|-.+|.++|++|-.- .+ ++. -=.|-|...+...+. .+ ..++++++|.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI--~q---s~~---sISftV~~sd~~~~~~~~~-~l~~~~~~~~ 69 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVV--AT---SEV---SISLTLDPSKLWSRELIQQ-ELDHVVEELE 69 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEE--Ee---cCC---EEEEEEEhhhhhhhhhHHH-HHHHHHHHHH
Confidence 578999999999999999999865 33 222 225777554332111 12 2456666654
No 309
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.79 E-value=3.8e+02 Score=23.54 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceee
Q 015010 258 KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELL 337 (414)
Q Consensus 258 pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v~ 337 (414)
+.+..-+-.++.++|+.+.+.++... .++..+-+|+=...|- +-+.++.+.+.+...|+.+.-+ .
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~-~~~~~lrI~id~~g~v---~lddC~~vSr~is~~LD~edpi---~-------- 72 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKE-GRDSVLRIYIDKEGGV---TLDDCADVSRAISALLDVEDPI---E-------- 72 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEc-CCCcEEEEEeCCCCCC---CHHHHHHHHHHHHHHhccCCcc---c--------
Confidence 34566677889999999999998732 3346666655334332 2456888888888888744222 1
Q ss_pred eeeeEEEEeC--Ccc
Q 015010 338 VANPVELSGR--GRP 350 (414)
Q Consensus 338 ~~~~lev~~~--DRp 350 (414)
-...|||+++ |||
T Consensus 73 ~~Y~LEVSSPGldRp 87 (153)
T COG0779 73 GAYFLEVSSPGLDRP 87 (153)
T ss_pred ccEEEEeeCCCCCCC
Confidence 1236788766 566
No 310
>PRK14633 hypothetical protein; Provisional
Probab=28.79 E-value=3.9e+02 Score=23.22 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 260 LIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 260 LL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
+-..+..++..+|+.+.+-.+. ..+...+-+|+=.++|- +-+.++.+.+.|..+|+.
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~--~~~~~~lrV~ID~~~Gv---~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVV--GSGKLTIRIFIDHENGV---SVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEEEEEeCCCCC---CHHHHHHHHHHHHHHhcc
Confidence 4456777899999999998876 33445555544225553 346788898898888874
No 311
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=28.65 E-value=4.9e+02 Score=24.90 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=33.7
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=..=+.+--+.|+.+..+-+.- .|++
T Consensus 194 ~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~G--lG~~ 231 (275)
T cd07937 194 PIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISP--LSGG 231 (275)
T ss_pred eEEEEecCCCChHHHHHHHHHHhCCCEEEEeccc--ccCC
Confidence 7899999999998877777778999999999998 8887
No 312
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=1.9e+02 Score=24.29 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCCeEEEEEEe---cCcccHHHHHHHHHHhCCceEEe
Q 015010 244 SPSHTLIQILG---QDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 244 ~~~~t~v~V~~---~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
+++...+.+.+ -|-+|+|+.|.+.|++.|+-|+-
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa 96 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA 96 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE
Confidence 45666777665 48899999999999999999994
No 313
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.93 E-value=4.6e+02 Score=26.24 Aligned_cols=85 Identities=8% Similarity=-0.023 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceee
Q 015010 258 KGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELL 337 (414)
Q Consensus 258 pGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v~ 337 (414)
|..+.+++..+.+.|.+... |. .|.| +..|.+...+.+.|++.+..
T Consensus 196 ~~~l~~~~~~~~~~Gad~I~--l~-DT~G---------------~a~P~~v~~lv~~l~~~~~~---------------- 241 (347)
T PLN02746 196 PSKVAYVAKELYDMGCYEIS--LG-DTIG---------------VGTPGTVVPMLEAVMAVVPV---------------- 241 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEE--ec-CCcC---------------CcCHHHHHHHHHHHHHhCCC----------------
Confidence 67788888888888876542 32 3344 23467777777766554310
Q ss_pred eeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 338 VANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 338 ~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
..|++.++|..|+=..=+-+=-+.|+.+..+-+.- .|+.
T Consensus 242 --~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~G--lGec 280 (347)
T PLN02746 242 --DKLAVHFHDTYGQALANILVSLQMGISTVDSSVAG--LGGC 280 (347)
T ss_pred --CeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccc--ccCC
Confidence 16899999999997777777778999999999998 8884
No 314
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.77 E-value=2.2e+02 Score=19.95 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=26.0
Q ss_pred EEEEEEec---CCcchHHHHHHHHHhCCCeEEEEEE
Q 015010 112 LLKFWCFQ---DRKGLLHDVTEVLCELELTIKRVKV 144 (414)
Q Consensus 112 ~i~v~~~~---Dr~GLl~~i~~~L~~~glnI~~A~i 144 (414)
.|.+.| . +++|+.+++...|++.|++|.-...
T Consensus 3 lisivg-~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 3 LIMVVG-EGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred EEEEEc-CCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 456666 4 6789999999999999999976544
No 315
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=27.70 E-value=1.8e+02 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=23.5
Q ss_pred HHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCC
Q 015010 129 TEVLCELELTIKRVKVSTTPDGRVMDLFFITDTR 162 (414)
Q Consensus 129 ~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~ 162 (414)
.......|..+..=.|.| .||+.+.++.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T-~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTT-EDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE--TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEe-CCCcEEEEEEccCCC
Confidence 456778999999999988 999999999997643
No 316
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=27.24 E-value=2.4e+02 Score=32.43 Aligned_cols=46 Identities=13% Similarity=0.046 Sum_probs=40.9
Q ss_pred cCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCC
Q 015010 119 QDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTREL 164 (414)
Q Consensus 119 ~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~ 164 (414)
+...|+|+.++.++..+|+.+..+.+-+..+|..+-.|||+...+.
T Consensus 241 ~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 241 YYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 5667999999999999999999999999889988889999976443
No 317
>PRK14632 hypothetical protein; Provisional
Probab=27.04 E-value=4.5e+02 Score=23.41 Aligned_cols=58 Identities=12% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 260 LIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 260 LL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+-.-+.-++..+|+.+.+..+. ..+...+-+|+=...|- +-+.++.+.+.|.++|+..
T Consensus 10 i~~li~pv~~~~G~eLvdve~~--~~~~~~lrV~ID~~~GV---~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELS--YGGRTVVRLFVDGPEGV---TIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEE--eCCCcEEEEEEECCCCC---CHHHHHHHHHHHHHHhccc
Confidence 4455677889999999998865 34445555554224453 3467888999998888743
No 318
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=26.83 E-value=77 Score=24.98 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+.++.+.|.+.|+.+..-.... ..|. -.||+.|++|+.+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~~~~~-~~g~-----~~~~~~DP~Gn~i~ 107 (112)
T cd07238 68 VDAALARAVAAGFAIVYGPTDE-PWGV-----RRFFVRDPFGKLVN 107 (112)
T ss_pred HHHHHHHHHhcCCeEecCCccC-CCce-----EEEEEECCCCCEEE
Confidence 5677788899999987543322 1233 36999999998763
No 319
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=26.74 E-value=66 Score=25.77 Aligned_cols=42 Identities=12% Similarity=0.080 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
|.++.+-|.+.|+.+....-.+ .+.. ....+|+.|++|+.+.
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~--~~~~--~~~~~~~~DP~G~~ie 113 (120)
T cd07254 72 VAEAKARAEAAGLPTFKEEDTT--CCYA--VQDKVWVTDPDGNAWE 113 (120)
T ss_pred HHHHHHHHHHcCCeEEccCCcc--cccC--CcceEEEECCCCCEEE
Confidence 5667778899999887542222 1111 2346999999999864
No 320
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=26.72 E-value=4.2e+02 Score=22.96 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 260 LIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 260 LL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+-..+..++..+|+.+.+..+... .+...+-+|+=..+| + +-+.++.+.+.+..+|+..
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~-~~~~~l~V~Id~~~g--v-~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKE-GRDSTLRIYIDKEGG--I-DLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEec-CCCcEEEEEEECCCC--C-CHHHHHHHHHHHHHHhccc
Confidence 445667889999999999888732 344555555422444 3 4577889999998888743
No 321
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=26.72 E-value=8.1e+02 Score=26.51 Aligned_cols=85 Identities=16% Similarity=0.155 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAEL 336 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v 336 (414)
-+..+.++++.+.++|.++.. |. .|. | +..|.+...|.+.|++.+. +
T Consensus 153 ~~~~~~~~a~~l~~~Gad~i~--i~-Dt~-------------G--~l~P~~~~~lv~~lk~~~~----~----------- 199 (593)
T PRK14040 153 TLQTWVDLAKQLEDMGVDSLC--IK-DMA-------------G--LLKPYAAYELVSRIKKRVD----V----------- 199 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--EC-CCC-------------C--CcCHHHHHHHHHHHHHhcC----C-----------
Confidence 346666666666666655432 21 222 2 2346677777777765441 2
Q ss_pred eeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 337 LVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 337 ~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=..-+-+=-+.|+.+..+-|+- .|++
T Consensus 200 ----pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~g--lG~~ 237 (593)
T PRK14040 200 ----PLHLHCHATTGLSTATLLKAIEAGIDGVDTAISS--MSMT 237 (593)
T ss_pred ----eEEEEECCCCchHHHHHHHHHHcCCCEEEecccc--cccc
Confidence 7899999999998888888889999999999998 8887
No 322
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.24 E-value=2.3e+02 Score=19.75 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=24.1
Q ss_pred EEEEEec---CcccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQ---DHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|.+.+. +.||+++++...|++.|++|.-
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~ 34 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIM 34 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEE
Confidence 4555553 7799999999999999999985
No 323
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=26.06 E-value=50 Score=27.65 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.9
Q ss_pred eCCccchHHHHHHHHHhCCceEEEEEEec
Q 015010 346 GRGRPLVFYDITLALKILSISIFSVEIGR 374 (414)
Q Consensus 346 ~~DRpGLL~dIt~~l~~~gl~I~~A~I~T 374 (414)
.-|=+|+|+.|.+.|+++|+.|+ -++|
T Consensus 73 ~FgltGilasV~~pLsd~gigIF--avSt 99 (128)
T COG3603 73 DFGLTGILASVSQPLSDNGIGIF--AVST 99 (128)
T ss_pred cCCcchhhhhhhhhHhhCCccEE--EEEe
Confidence 34889999999999999999999 4677
No 324
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=26.02 E-value=78 Score=25.16 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 352 VFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 352 LL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
=+.++.+.|.+.|+.+... ... .+.+ .||+.|++|+.+.
T Consensus 67 d~~~~~~~l~~~Gi~~~~~-~~~--~~~~-----~~~~~DP~Gn~ie 105 (112)
T cd08344 67 DFAAFARHLEAAGVALAAA-PPG--ADPD-----GVWFRDPDGNLLQ 105 (112)
T ss_pred hHHHHHHHHHHcCCceecC-CCc--CCCC-----EEEEECCCCCEEE
Confidence 4567788889999987643 222 2222 5999999999764
No 325
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=26.01 E-value=5.7e+02 Score=24.19 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=62.8
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAEL 336 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v 336 (414)
-|..+..++..+.+.|..... +. .|.| . ..|.+...+.+.|++.+... .+
T Consensus 141 ~~~~~~~~~~~~~~~G~~~i~--l~-DT~G-------------~--~~P~~v~~lv~~l~~~~~~~-~i----------- 190 (268)
T cd07940 141 DLDFLIEVVEAAIEAGATTIN--IP-DTVG-------------Y--LTPEEFGELIKKLKENVPNI-KV----------- 190 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--EC-CCCC-------------C--CCHHHHHHHHHHHHHhCCCC-ce-----------
Confidence 478888888888888865431 21 2233 2 34677777777776655321 11
Q ss_pred eeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 337 LVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 337 ~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|..|+=..-+-+--+.|+.+..+-+.- .|++
T Consensus 191 ----~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~G--lG~~ 228 (268)
T cd07940 191 ----PISVHCHNDLGLAVANSLAAVEAGARQVECTING--IGER 228 (268)
T ss_pred ----eEEEEecCCcchHHHHHHHHHHhCCCEEEEEeec--cccc
Confidence 7899999999998777777778899999999998 8876
No 326
>PRK14640 hypothetical protein; Provisional
Probab=25.97 E-value=4.4e+02 Score=22.91 Aligned_cols=60 Identities=7% Similarity=0.037 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 259 GLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 259 GLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
-+...+.-++..+|+.+.+-.+... .+...+-+|+=..+| + +-+.++.+.++|..+|+..
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~-~~~~~lrV~ID~~~g--v-~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRA-GKHSTLRVYIDGENG--V-SVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEec-CCCcEEEEEEECCCC--C-CHHHHHHHHHHHHHHhccc
Confidence 3455677788999999999877632 344565555423555 3 3567899999998888743
No 327
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=25.96 E-value=2.6e+02 Score=20.26 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=23.4
Q ss_pred EEEEEecC--cccHHHHHHHHHHhCCceEEe
Q 015010 249 LIQILGQD--HKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 249 ~v~V~~~D--rpGLL~~i~~~L~~~~l~I~~ 277 (414)
.|.+.+.. +||++.++..+|.+.|+++..
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~ 34 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIA 34 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEE
Confidence 45555532 689999999999999999984
No 328
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.39 E-value=2.6e+02 Score=20.06 Aligned_cols=34 Identities=9% Similarity=0.167 Sum_probs=25.9
Q ss_pred EEEEEEec--CCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 112 LLKFWCFQ--DRKGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 112 ~i~v~~~~--Dr~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
.|.+.| . ..+|+++++..+|++.|++|.-....+
T Consensus 3 ~VsvVG-~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIG-NVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEEC-CCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 345555 3 357999999999999999998655444
No 329
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=25.35 E-value=6.1e+02 Score=24.51 Aligned_cols=86 Identities=12% Similarity=0.007 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAEL 336 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v 336 (414)
.|..+.++++.+.+.|.+... +. .|.| +..|.+..++.+.|++.+.. +
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~--l~-DT~G---------------~~~P~~v~~lv~~l~~~~~~---~----------- 200 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEIS--LG-DTIG---------------VGTPGQVRAVLEAVLAEFPA---E----------- 200 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEE--ec-cccC---------------ccCHHHHHHHHHHHHHhCCC---C-----------
Confidence 489999999999999987542 32 3344 23477777777777664421 1
Q ss_pred eeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 337 LVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 337 ~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|..|+=-.=+-+=-+.|+....+-+.- .|+.
T Consensus 201 ----~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~G--lGec 238 (287)
T PRK05692 201 ----RLAGHFHDTYGQALANIYASLEEGITVFDASVGG--LGGC 238 (287)
T ss_pred ----eEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccc--cCCC
Confidence 7899999999987766666679999999999998 8883
No 330
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=25.31 E-value=6.1e+02 Score=26.83 Aligned_cols=91 Identities=7% Similarity=0.006 Sum_probs=67.1
Q ss_pred EecCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCC
Q 015010 253 LGQDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGP 332 (414)
Q Consensus 253 ~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~ 332 (414)
...+-+..+.+++..+.++|.++.. |. .|.| +..|.+...|.+.|++.+... +
T Consensus 149 sp~~t~e~~~~~a~~l~~~Gad~I~--Ik-DtaG---------------ll~P~~~~~LV~~Lk~~~~~~--i------- 201 (499)
T PRK12330 149 SPIHTVEGFVEQAKRLLDMGADSIC--IK-DMAA---------------LLKPQPAYDIVKGIKEACGED--T------- 201 (499)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEE--eC-CCcc---------------CCCHHHHHHHHHHHHHhCCCC--C-------
Confidence 4466788888888888888876552 32 2233 335777788877777654211 1
Q ss_pred CceeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 333 DAELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 333 ~~~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=..=+-+--+.|+.+..+-|+- .|++
T Consensus 202 --------pI~~H~Hnt~GlA~An~laAieAGad~vDtai~G--lg~~ 239 (499)
T PRK12330 202 --------RINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISS--MSLG 239 (499)
T ss_pred --------eEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccc--cccc
Confidence 7899999999998888888889999999999988 7766
No 331
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=25.23 E-value=4.2e+02 Score=22.53 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=33.7
Q ss_pred HHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcC
Q 015010 264 MMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLR 321 (414)
Q Consensus 264 i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~ 321 (414)
|...+..+|+.+.+..+... .+...+-+|+-. ++. + +-+.++.+.+.+...|+.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~-~~~~~l~V~id~-~~g-v-~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKE-GGNRILRVFIDK-DGG-V-SLDDCEKVSRAISALLDA 55 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEE-TTEEEEEEEEE--SS-----HHHHHHHHHHHGGGTTT
T ss_pred cccchhhcCCEEEEEEEEEC-CCCEEEEEEEEe-CCC-C-CHHHHHHHHHHHHHHHcc
Confidence 45678899999999888743 444566655544 333 3 356788888888777765
No 332
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=25.07 E-value=1e+02 Score=24.44 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=26.5
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+.++...|.++|+.+.. .... .| ...||+.|++|..+
T Consensus 87 ~~~~~~~~~~~g~~~~~--~~~~-~~-----~~~~~~~DP~G~~i 123 (126)
T cd08346 87 LDAWRERLRAAGVPVSG--VVDH-FG-----ERSIYFEDPDGLRL 123 (126)
T ss_pred HHHHHHHHHHcCCcccc--eEee-cc-----eEEEEEECCCCCEE
Confidence 57788889999998864 2221 22 34799999999864
No 333
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.84 E-value=1.6e+02 Score=29.96 Aligned_cols=34 Identities=21% Similarity=0.572 Sum_probs=31.3
Q ss_pred EEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEe
Q 015010 112 LLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVST 146 (414)
Q Consensus 112 ~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T 146 (414)
.|+|.| .||-||..++-..|...++|+....|-.
T Consensus 2 RleV~c-edRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFC-EDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEe-hhhhchHHHHHHHHHhcccCccceeecC
Confidence 488999 9999999999999999999999988844
No 334
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=24.70 E-value=1.1e+02 Score=31.02 Aligned_cols=120 Identities=10% Similarity=0.112 Sum_probs=65.8
Q ss_pred eEEEEEEec---CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC-
Q 015010 247 HTLIQILGQ---DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP- 322 (414)
Q Consensus 247 ~t~v~V~~~---DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~- 322 (414)
-+++.|.+. -..|.|+.|-.+|..+|+.|-- |.|+ . +.-...+++ .+..+ .+.|...|.++.+.-
T Consensus 393 v~mldI~Str~l~q~GFLAkvFti~ek~~isVDv--vaTS-E---V~iSltL~~--~~~~s---reliq~~l~~a~eeL~ 461 (559)
T KOG0456|consen 393 VTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDV--VATS-E---VSISLTLDP--SKLDS---RELIQGELDQAVEELE 461 (559)
T ss_pred EEEEEecccchhhhhhHHHHHHHHHHHhCcEEEE--EEee-e---EEEEEecCh--hhhhh---HHHHHhhHHHHHHHHH
Confidence 455665543 3469999999999999999873 5432 1 111111111 11111 122223332222210
Q ss_pred -c-ceeeecCCCCceeeeeeeEEEEeC--CccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcC
Q 015010 323 -L-RVAVVNRGPDAELLVANPVELSGR--GRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEA 392 (414)
Q Consensus 323 -~-~~~~~~~~~~~~v~~~~~lev~~~--DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~ 392 (414)
+ .+++..+.. +|.+.|+ .-.|++-..=++|++.|+||.+ -. .|.. .++.=.|.|.
T Consensus 462 ki~~vdll~~~s--------IiSLiGnvq~ss~i~~rmF~~l~e~giNvqM---IS--QGAs--kvNIS~ivne 520 (559)
T KOG0456|consen 462 KIAVVDLLKGRS--------IISLIGNVQNSSGILERMFCVLAENGINVQM---IS--QGAS--KVNISCIVNE 520 (559)
T ss_pred Hhhhhhhhccch--------HHhhhhhhhhhhHHHHHHHHHHHhcCcceee---ec--cccc--cceEEEEECh
Confidence 0 111222111 4455554 4579999999999999999984 33 5666 6666666654
No 335
>PRK00341 hypothetical protein; Provisional
Probab=24.53 E-value=3.6e+02 Score=21.35 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE--eeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA--KPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRM 317 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t--~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~ 317 (414)
+.+.|.+.+.+++...|..++..+. ......+.+ +..|.+..=++.+. ..++++++.|-+.|.+
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~-----~~s~~q~~~iy~~L~~ 83 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIV-----ATDEDQLQDINSALRA 83 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEE-----ECCHHHHHHHHHHHhh
No 336
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=24.03 E-value=1.7e+02 Score=22.98 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=31.6
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+-+...| +.++.+.|.+.|+.+..-- .. ..+.+ .+|+.|++|..+
T Consensus 74 i~~~v~d----id~~~~~l~~~G~~~~~~~-~~-~~~~~-----~~~~~DpdG~~i 118 (121)
T cd07233 74 LAFAVDD----VYAACERLEEMGVEVTKPP-GD-GGMKG-----IAFIKDPDGYWI 118 (121)
T ss_pred EEEEeCC----HHHHHHHHHHCCCEEeeCC-cc-CCCce-----EEEEECCCCCEE
Confidence 4445555 8889999999999998632 22 12222 588999999865
No 337
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=23.95 E-value=1.3e+02 Score=22.08 Aligned_cols=28 Identities=14% Similarity=0.305 Sum_probs=22.8
Q ss_pred EEEEe-cCcccHHHHHHHHHHhCCceEEe
Q 015010 250 IQILG-QDHKGLIYDMMRTLKDYNTQVSY 277 (414)
Q Consensus 250 v~V~~-~DrpGLL~~i~~~L~~~~l~I~~ 277 (414)
|+|.. ++.||.+++|...|+++|++|--
T Consensus 4 vtv~~~~~~~~~~a~if~~La~~~InvDm 32 (67)
T cd04914 4 IKVKAKDNENDLQQRVFKALANAGISVDL 32 (67)
T ss_pred EEEecCCCCccHHHHHHHHHHHcCCcEEE
Confidence 44443 35599999999999999999985
No 338
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.79 E-value=1e+02 Score=24.24 Aligned_cols=48 Identities=8% Similarity=0.006 Sum_probs=28.2
Q ss_pred EEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 342 VELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 342 lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+-+...|+..+ ..+-..+.+.|+.|...-... ..++ .||++|++|+.+
T Consensus 63 ~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~--~~g~-----~~~~~DPdGn~i 110 (114)
T cd07261 63 LAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEM--DFGY-----TFVALDPDGHRL 110 (114)
T ss_pred EEEEcCCHHHH-HHHHHHHHHCCCeEecCcccc--CCcc-----EEEEECCCCCEE
Confidence 33444443333 344555667898887543222 2223 589999999876
No 339
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=23.50 E-value=2.3e+02 Score=20.74 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHcCcEEEEEEEEecCCEEEEEEEEEcCC
Q 015010 38 CRIILLFGLSISRGDLSKDGKWCYLVFWVVGKP 70 (414)
Q Consensus 38 ~~vl~~~~L~I~~a~i~tdg~~~~d~f~v~~~~ 70 (414)
.+.+..+|+.+-.=.|.|++|+.+.+|.+..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999997655
No 340
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=23.44 E-value=6.7e+02 Score=24.12 Aligned_cols=88 Identities=13% Similarity=0.143 Sum_probs=64.5
Q ss_pred cCcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCc
Q 015010 255 QDHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDA 334 (414)
Q Consensus 255 ~DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~ 334 (414)
+.-|..+.+++..+.++|..... +. .|.| +..|.+..++.+.|++.+. ..
T Consensus 143 r~~~~~~~~~~~~~~~~G~~~i~--l~-DT~G---------------~~~P~~v~~l~~~l~~~~~----------~~-- 192 (280)
T cd07945 143 RDSPDYVFQLVDFLSDLPIKRIM--LP-DTLG---------------ILSPFETYTYISDMVKRYP----------NL-- 192 (280)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEE--ec-CCCC---------------CCCHHHHHHHHHHHHhhCC----------CC--
Confidence 34588999999999999987542 32 2344 3347776777666654321 11
Q ss_pred eeeeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 335 ELLVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 335 ~v~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=..=+-+=-+.|+....+-+.- .|++
T Consensus 193 ------~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~G--lGe~ 230 (280)
T cd07945 193 ------HFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNG--LGER 230 (280)
T ss_pred ------eEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc--cccc
Confidence 7899999999998777777789999999999998 8876
No 341
>PRK14637 hypothetical protein; Provisional
Probab=23.06 E-value=5.1e+02 Score=22.58 Aligned_cols=76 Identities=16% Similarity=0.053 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCceeee
Q 015010 259 GLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAELLV 338 (414)
Q Consensus 259 GLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v~~ 338 (414)
|....+..++..+|+.+.+-++... .+...+-+|+=..+| .+-+.++++.+.|..+|+.... ....
T Consensus 9 ~~~~~v~p~~~~~g~eLvdve~~~~-~~~~~lrV~ID~~~g---V~iddC~~vSr~Is~~LD~~~~----~~~y------ 74 (151)
T PRK14637 9 GYFSECEPVVEGLGCKLVDLSRRVQ-QAQGRVRAVIYSAGG---VGLDDCARVHRILVPRLEALGG----VRDV------ 74 (151)
T ss_pred cHHHHHHHHHHhcCCEEEEEEEEec-CCCcEEEEEEECCCC---CCHHHHHHHHHHHHHHhccccc----ccCc------
Q ss_pred eeeEEEEeC--Ccc
Q 015010 339 ANPVELSGR--GRP 350 (414)
Q Consensus 339 ~~~lev~~~--DRp 350 (414)
.|||+++ |||
T Consensus 75 --~LEVSSPGldRp 86 (151)
T PRK14637 75 --FLEVSSPGIERV 86 (151)
T ss_pred --EEEEeCCCCCCC
No 342
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.97 E-value=1.2e+02 Score=23.65 Aligned_cols=38 Identities=16% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+.++-+.|.+.|+.+..-.... .+ ...||++|++|..+
T Consensus 78 i~~~~~~l~~~g~~~~~~~~~~--~~-----~~~~~~~DP~G~~i 115 (119)
T cd07263 78 IDATYEELKARGVEFSEEPREM--PY-----GTVAVFRDPDGNLF 115 (119)
T ss_pred HHHHHHHHHhCCCEEeeccccC--CC-----ceEEEEECCCCCEE
Confidence 6778888889999887644211 12 24799999999865
No 343
>PRK14647 hypothetical protein; Provisional
Probab=22.96 E-value=5.2e+02 Score=22.65 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 260 LIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 260 LL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+-..+..++..+|+.+.+..+... .+...+-+|+=.+.|- +-+.++.+.+.|.+.|+..
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~-~~~~~lrV~ID~~~gv---slddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKRE-GREMVLRLFIDKEGGV---NLDDCAEVSRELSEILDVE 68 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEec-CCCeEEEEEEeCCCCC---CHHHHHHHHHHHHHHHccc
Confidence 445567788999999999887632 3335565554224442 3467888999998888743
No 344
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=21.73 E-value=3.4e+02 Score=20.10 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=41.2
Q ss_pred EEEEEEEecCCcchHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHH
Q 015010 111 FLLKFWCFQDRKGLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEA 180 (414)
Q Consensus 111 ~~i~v~~~~Dr~GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~ 180 (414)
+.|.+.+..-...+++++++.+ ....||+.|.|.. ..+..+-.|.+.-+. +++..++..+.|++
T Consensus 5 ~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~-i~~~~~G~l~l~l~g----~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 5 VRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEE-IQGTPFGILILELPG----DDEEIEKAIAYLRE 68 (76)
T ss_dssp EEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEE-ETTEEEEEEEEEEES-----HHHHHHHHHHHHH
T ss_pred EEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEE-cCCeeEEEEEEEEEC----CHHHHHHHHHHHHH
Confidence 4556665222347888888776 6889999999999 677677777776421 34455555555543
No 345
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.50 E-value=1.2e+02 Score=23.98 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLE 397 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l 397 (414)
+....+-+.+.|+.+....- + ..|. ..||+.|++|..+
T Consensus 80 l~~~~~~l~~~g~~~~~~~~-~-~~~~-----~~~~~~DP~G~~i 117 (122)
T cd08354 80 LAEWEAHLEAKGVAIESEVQ-W-PRGG-----RSLYFRDPDGNLL 117 (122)
T ss_pred HHHHHHHHHhcCCceecccc-C-CCCe-----eEEEEECCCCCEE
Confidence 45566677788998754321 2 1233 3699999999875
No 346
>PRK14639 hypothetical protein; Provisional
Probab=21.41 E-value=5.3e+02 Score=22.14 Aligned_cols=55 Identities=11% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 264 MMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 264 i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
+..++..+|+.+.+..+... .+...+-+|+=...| + +-+.++.+.+.|.+.|+..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~-~~~~~lrV~Id~~~g--v-~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSE-NGRKIYRVYITKEGG--V-NLDDCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEec-CCCcEEEEEEeCCCC--C-CHHHHHHHHHHHHHHhccc
Confidence 34578899999999887732 444566555522444 3 3567899999998888743
No 347
>PRK14630 hypothetical protein; Provisional
Probab=21.30 E-value=5.4e+02 Score=22.19 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=43.1
Q ss_pred CcccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCC
Q 015010 256 DHKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRP 322 (414)
Q Consensus 256 DrpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~ 322 (414)
|...+-..+..++..+|+.+.+...... .+...+-+|+=.++|- +-+.++.+.+.+...|+.+
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~-~~~~~lrV~Id~~~gV---~idDC~~vSr~i~~~ld~~ 68 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRN-RNEGKIQIVLYKKDSF---GVDTLCDLHKMILLILEAV 68 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEec-CCCcEEEEEEECCCCC---CHHHHHHHHHHHHHHhccc
Confidence 5556677788899999999999887632 3445655554335553 3467888888887777543
No 348
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=20.93 E-value=99 Score=24.69 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=26.4
Q ss_pred hHHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 352 VFYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 352 LL~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
=|.++...|++.|+.+........ .| ....||+.|++|..+.
T Consensus 73 dv~~~~~~l~~~g~~~~~~~~~~~-~~----~~~~~~~~DPdG~~ve 114 (121)
T cd07266 73 DLDKAEAFFQELGLPTEWVEAGEE-PG----QGRALRVEDPLGFPIE 114 (121)
T ss_pred HHHHHHHHHHHcCCCcccccCCcC-CC----CccEEEEECCCCCEEE
Confidence 345577778888988754311120 12 2246999999999764
No 349
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=20.90 E-value=9.4e+02 Score=25.27 Aligned_cols=89 Identities=11% Similarity=0.038 Sum_probs=65.2
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAEL 336 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v 336 (414)
-|..+.+++..+.+.|..+.. +. .|.| ...|.+...+.+.|.+.+.....+
T Consensus 144 d~~~l~~~~~~~~~~Ga~~i~--l~-DTvG---------------~~~P~~~~~~i~~l~~~~~~~~~v----------- 194 (494)
T TIGR00973 144 EIPFLARIVEAAINAGATTIN--IP-DTVG---------------YALPAEYGNLIKGLRENVPNIDKA----------- 194 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--eC-CCCC---------------CCCHHHHHHHHHHHHHhhccccCc-----------
Confidence 478899999999998876542 22 2333 234777788878777655322111
Q ss_pred eeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 337 LVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 337 ~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=-.=+-+--+.|.....+-+.- .|+|
T Consensus 195 ----~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~G--lGER 232 (494)
T TIGR00973 195 ----ILSVHCHNDLGLAVANSLAAVQNGARQVECTING--IGER 232 (494)
T ss_pred ----eEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeec--cccc
Confidence 7899999999987776666678999999999999 9987
No 350
>PLN02321 2-isopropylmalate synthase
Probab=20.89 E-value=7.2e+02 Score=27.14 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred cccHHHHHHHHHHhCCceEEeEEEEEeeCCCEEEEEEEEecCCCCCCChHHHHHHHHHHHHHHcCCcceeeecCCCCcee
Q 015010 257 HKGLIYDMMRTLKDYNTQVSYGRFFAKPRGNCEVDLFIMQADGKKIVDPSKQDALCSRLRMELLRPLRVAVVNRGPDAEL 336 (414)
Q Consensus 257 rpGLL~~i~~~L~~~~l~I~~A~I~t~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~v 336 (414)
-|..+.+++..+.+.|..... +. .|.| ...|.+...+.+.|.+.+..... .
T Consensus 238 d~d~l~~~~~~a~~aGa~~I~--L~-DTvG---------------~~~P~~v~~li~~l~~~~~~~~~-------v---- 288 (632)
T PLN02321 238 DPEFLYRILGEVIKAGATTLN--IP-DTVG---------------YTLPSEFGQLIADIKANTPGIEN-------V---- 288 (632)
T ss_pred CHHHHHHHHHHHHHcCCCEEE--ec-cccc---------------CCCHHHHHHHHHHHHHhcCCCCC-------c----
Confidence 477888888888888865442 22 2333 23467777777777654432211 1
Q ss_pred eeeeeEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 337 LVANPVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 337 ~~~~~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.|+=-.=+-+=-+.|+....+-|.- .|||
T Consensus 289 ----~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinG--lGER 326 (632)
T PLN02321 289 ----IISTHCQNDLGLSTANTLAGAHAGARQVEVTING--IGER 326 (632)
T ss_pred ----eEEEEeCCCCCHHHHHHHHHHHhCCCEEEEeccc--cccc
Confidence 7899999999997777776779999999999999 8987
No 351
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.84 E-value=1.4e+02 Score=23.93 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=30.7
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCc-eEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 341 PVELSGRGRPLVFYDITLALKILSI-SIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl-~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
.+.+...| +.+.-+.|++.|. .+... +.....|.+ .||+.|++|+.+.
T Consensus 67 ~l~~~v~d----vd~~~~~l~~~g~~~~~~~-~~~~~~g~r-----~~~~~DPdGn~ie 115 (120)
T cd09011 67 ELYFEEED----FDAFLDKLKRYDNIEYVHP-IKEHPWGQR-----VVRFYDPDKHIIE 115 (120)
T ss_pred EEEEEehh----hHHHHHHHHhcCCcEEecC-cccCCCccE-----EEEEECCCCCEEE
Confidence 44445555 7777788888875 45443 333123545 7999999999764
No 352
>PRK14646 hypothetical protein; Provisional
Probab=20.84 E-value=5.7e+02 Score=22.33 Aligned_cols=61 Identities=15% Similarity=0.045 Sum_probs=44.5
Q ss_pred chHHHHHHHHHhCCCeEEEEEEEeCCCCeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHcc
Q 015010 123 GLLHDVTEVLCELELTIKRVKVSTTPDGRVMDLFFITDTRELLHTRKRREETIHHLEAVLGK 184 (414)
Q Consensus 123 GLl~~i~~~L~~~glnI~~A~i~T~~~g~~~d~f~V~~~~~~~~~~~~~~~i~~~L~~~l~~ 184 (414)
-+...+..++..+|+.+.+..+....++.++ .+++..+.+..++-+.++.+...+...|..
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 3566788899999999999999884455555 455554433345677888888888888863
No 353
>PRK02047 hypothetical protein; Provisional
Probab=20.61 E-value=4.3e+02 Score=20.84 Aligned_cols=63 Identities=11% Similarity=0.202 Sum_probs=41.9
Q ss_pred EEEEEEecCcccHHHHHHHHHHhCCceEEeEEEEE--eeCCCEEEEEEEEecCCCCCCChHHHHHHHHHH
Q 015010 248 TLIQILGQDHKGLIYDMMRTLKDYNTQVSYGRFFA--KPRGNCEVDLFIMQADGKKIVDPSKQDALCSRL 315 (414)
Q Consensus 248 t~v~V~~~DrpGLL~~i~~~L~~~~l~I~~A~I~t--~t~g~~~~D~F~v~~~g~~~~~~~~~~~l~~~L 315 (414)
+.+.|.+.+.+++...|..++..+.-.+..+.+.+ ++.|.+..=+..+. ..+++++..|-+.|
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~-----v~s~eq~~~iY~~L 81 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR-----ATSREQLDNIYRAL 81 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence 67999999999999999999998866655555532 34554433333343 33456666665555
No 354
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=20.32 E-value=94 Score=24.96 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCceEEE---EEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 353 FYDITLALKILSISIFS---VEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~---A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+..+-+.|.++|+.+.. ..+.- ..+..|....||+.|++|+.+.
T Consensus 69 vd~~~~~l~~~G~~~~~~~~~~~~~--~~~~~~g~~~~~~~DPdG~~ie 115 (120)
T cd08350 69 VAALHAEFRAAGLPETGSGIPRITP--PEDQPWGMREFALVDPDGNLLR 115 (120)
T ss_pred HHHHHHHHHHhCccccccCCCcccC--CcCCCCceeEEEEECCCCCEEE
Confidence 77778888999997541 11211 1111123347999999999764
No 355
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=20.29 E-value=1.5e+02 Score=23.75 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCceEEEEEEecceeCceeeEEEEEEEEcCCCCCCC
Q 015010 353 FYDITLALKILSISIFSVEIGRYMIHDREWEVYRILLDEADGNLEP 398 (414)
Q Consensus 353 L~dIt~~l~~~gl~I~~A~I~T~~~g~~~~~~d~Fyv~d~~g~~l~ 398 (414)
+.++.+.|++.|+.+........ .+ ....+|+.|++|+.+.
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~-~~----~~~~~~~~DPdG~~iE 115 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGEL-PG----VGRRVRFQLPSGHTME 115 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCC-CC----CceEEEEECCCCCEEE
Confidence 56788889999998864322220 11 1236899999999764
No 356
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.15 E-value=7.6e+02 Score=23.48 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=33.8
Q ss_pred eEEEEeCCccchHHHHHHHHHhCCceEEEEEEecceeCce
Q 015010 341 PVELSGRGRPLVFYDITLALKILSISIFSVEIGRYMIHDR 380 (414)
Q Consensus 341 ~lev~~~DRpGLL~dIt~~l~~~gl~I~~A~I~T~~~g~~ 380 (414)
.|++.++|-.||=..-+.+--+.|+.+..+-+.- .|++
T Consensus 185 ~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G--~G~~ 222 (266)
T cd07944 185 KLGFHAHNNLQLALANTLEAIELGVEIIDATVYG--MGRG 222 (266)
T ss_pred eEEEEeCCCccHHHHHHHHHHHcCCCEEEEeccc--CCCC
Confidence 7899999999998888887789999999999988 8875
Done!