BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015013
(414 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|B Chain B, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|C Chain C, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|D Chain D, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|E Chain E, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|F Chain F, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|G Chain G, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
pdb|2GOY|H Chain H, Crystal Structure Of Assimilatory Adenosine 5'-
Phosphosulfate Reductase With Bound Aps
Length = 275
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 132/238 (55%), Positives = 176/238 (73%), Gaps = 3/238 (1%)
Query: 87 DFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTG 146
D A L + SP +I+ A E FG+++ I+FSGAEDV L++ A R +VFSLDTG
Sbjct: 29 DLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTG 88
Query: 147 RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPL 206
RL+PETYRF D+V +H+GI I+ + PD ++ LV+ KGLFSFY DGH ECC +RK+ PL
Sbjct: 89 RLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPL 148
Query: 207 RRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 266
+R L G+RAW TGQR+DQSPGTRS++ V+++D F E L K+NP++++ ++W
Sbjct: 149 KRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVW 205
Query: 267 NFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 324
++R +++P NSLH +GYISIGCEPCTRPVLP QHEREGRWWWE+A KECGLH GN+
Sbjct: 206 GYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263
>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|B Chain B, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|C Chain C, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
pdb|2OQ2|D Chain D, Crystal Structure Of Yeast Paps Reductase With Pap, A
Product Complex
Length = 261
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 143 LDTGRLNPETYRFFDEVEKHF----GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC 198
+DT P+T +E+EK + I PD E +A SK +E +
Sbjct: 76 IDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYD 135
Query: 199 RVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256
+ KV P RA K L A TG+RK Q RS++ ++++D + ++K NP
Sbjct: 136 YLAKVEPAHRAYKELHISAVFTGRRKSQGSA-RSQLSIIEIDEL--------NGILKINP 186
Query: 257 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK- 315
+ N + ++ +VP N L GY SIG T+PV G+ ER GRW KAK
Sbjct: 187 LINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW---KGKAKT 243
Query: 316 ECGLHKGN 323
ECG+H+ +
Sbjct: 244 ECGIHEAS 251
>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 252
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Query: 140 VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 199
V DTG L PETYRF DE+ + ++ R L+ +G ++
Sbjct: 74 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 133
Query: 200 VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 257
+ KV P+ RALK L A W G R++QS G+R+ +PV+ + + GV ++ P+
Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVLAI-------QRGVFKVL---PI 182
Query: 258 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGR 306
+ I+ +L+ + + L +GY+S+G TR PG E E R
Sbjct: 183 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETR 231
>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase
Length = 215
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 140 VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 199
V DTG L PETYRF DE+ + ++ R L+ +G ++
Sbjct: 73 VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 132
Query: 200 VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 257
+ KV P+ RALK L A W G R++QS G+R+ +PV+ + + GV ++ P+
Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVLAI-------QRGVFKVL---PI 181
Query: 258 ANVKGNDIWNFLRTMDVPINSLHSQGYISIG 288
+ I+ +L+ + + L +GY+S+G
Sbjct: 182 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212
>pdb|1ZUN|A Chain A, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 325
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 86/209 (41%), Gaps = 30/209 (14%)
Query: 93 KELENASPLEIMDRALEKFGNDI---AIAFSGAEDVALIEYAHLTGR-PFRVFSLDTGRL 148
K+LE A + I+ +F N + +I A + L A G+ PF V +DT
Sbjct: 29 KQLE-AESIHIIREVAAEFDNPVXLYSIGKDSAVXLHLARKAFFPGKLPFPVXHVDTRWK 87
Query: 149 NPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLR 207
E YRF D+ + G+ I ++ PD V ++G+ F G + + K L+
Sbjct: 88 FQEXYRFRDQXVEEXGLDLITHINPDGV-------AQGINPFTH-GSAKHTDIXKTEGLK 139
Query: 208 RAL--KGLRAWITGQRKDQSPGTRSE------------IPVVQVDPVFEGLEGGV--GSL 251
+AL G A G R+D+ E P Q ++ G V G
Sbjct: 140 QALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGES 199
Query: 252 VKWNPVANVKGNDIWNFLRTMDVPINSLH 280
++ P++N DIW ++ +PI L+
Sbjct: 200 IRVFPLSNWTELDIWQYIYLEGIPIVPLY 228
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 375 WLVVLYAPWCQFCQ 388
WLV YAPWC CQ
Sbjct: 38 WLVEFYAPWCGHCQ 51
>pdb|3VUN|A Chain A, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|C Chain C, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group.
pdb|3VUN|E Chain E, Crystal Structure Of A Influenza A Virus (AAICHI21968
H3N2) Hemagglutinin In C2 Space Group
Length = 329
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|1HGD|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGD|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGE|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
Length = 328
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|5HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|5HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|1HGF|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGF|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGG|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGH|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGI|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGI|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-ray
Crystallography
pdb|1HGJ|A Chain A, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|C Chain C, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1HGJ|E Chain E, Binding Of Influenza Virus Hemagglutinin To Analogs Of Its
Cell- Surface Receptor, Sialic Acid: Analysis By Proton
Nuclear Magnetic Resonance Spectroscopy And X-Ray
Crystallography
pdb|1QFU|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1EO8|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1KEN|A Chain A, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|C Chain C, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|E Chain E, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|2YPG|A Chain A, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|C Chain C, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
pdb|2YPG|E Chain E, Haemagglutinin Of 1968 Human H3n2 Virus In Complex With
Human Receptor Analogue Lstc
Length = 328
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3ZTJ|A Chain A, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|C Chain C, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin.
pdb|3ZTJ|E Chain E, Structure Of Influenza A Neutralizing Antibody Selected
From Cultures Of Single Human Plasma Cells In Complex
With Human H3 Influenza Haemagglutinin
Length = 329
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3EYM|A Chain A, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|C Chain C, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
pdb|3EYM|E Chain E, Structure Of Influenza Haemagglutinin In Complex With An
Inhibitor Of Membrane Fusion
Length = 321
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 74 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 116
>pdb|2HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|2HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3SDY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr8020
Bound To The Influenza A H3 Hemagglutinin
pdb|4FQY|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody Cr9114
Bound To H3 Influenza Hemagglutinin
pdb|4FNK|A Chain A, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|C Chain C, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FNK|E Chain E, Crystal Structure Of The AHONG KONG11968 (H3N2) INFLUENZA
VIRUS Hemagglutinin
pdb|4FQR|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|E Chain E, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|G Chain G, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|I Chain I, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|K Chain K, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|Q Chain Q, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|S Chain S, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|U Chain U, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|W Chain W, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 323
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 76 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 118
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|3HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|3HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|A Chain A, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|C Chain C, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
pdb|4HMG|E Chain E, Refinement Of The Influenza Virus Hemagglutinin By
Simulated Annealing
Length = 328
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 82 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 124
>pdb|4FP8|A Chain A, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|B Chain B, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|C Chain C, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|D Chain D, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
Length = 278
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 44 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 86
>pdb|2VIS|C Chain C, Influenza Virus Hemagglutinin, (Escape) Mutant With Thr
131 Replaced By Ile, Complexed With A Neutralizing
Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2VIR|C Chain C, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2VIT|C Chain C, Influenza Virus Hemagglutinin, Mutant With Thr 155
Replaced By Ile, Complexed With A Neutralizing Antibody
Length = 282
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 55 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 97
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 347 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
+IF +Q+ G + ++ ++ LV+ YAPWC C+
Sbjct: 351 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCK 392
>pdb|4HCN|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
pdb|4HCP|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 255
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 241 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 277
++ L GG PVA + N+I+ + DVPI+
Sbjct: 66 YKELTGGADPFALMTPVAGLSANNIFKLMTEKDVPID 102
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 43 STSLSQRRSLVRPLNAEPKRNDSVV--PLAATLATPEVAEKVEGEEDFEQF--------- 91
+TS ++ L+ LNA+ + +V PL A + +V E++ ++D + F
Sbjct: 73 TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLC 132
Query: 92 --AKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLN 149
A L +P I+ LE++ D + + +I +++ GRP + L G
Sbjct: 133 QRAPRLRPCTPRGIV-TLLERYNID-----TFGLNAVVIGASNIVGRPMSMELLLAGCTT 186
Query: 150 PETYRFFDEVEKHF 163
T+RF + H
Sbjct: 187 TVTHRFTKNLRHHV 200
>pdb|1HA0|A Chain A, Hemagglutinin Precursor Ha0
Length = 494
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 151 ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDG 193
ET+ F E K F Y PD +++LV S G F +G
Sbjct: 74 ETWDLFVERSKAFSNCYPYDVPDYASLRSLVASSGTLEFITEG 116
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 372 QEPWLVVLYAPWCQFCQVID 391
++ W+V YAPWC C+ ++
Sbjct: 25 EDVWMVEFYAPWCGHCKNLE 44
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 63 NDSVVPLAATLATPEVAEKVEGEED 87
N VPLA + EVAEK++G++D
Sbjct: 117 NKDCVPLAVFMVQKEVAEKLQGKKD 141
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With Rna
And Sah
Length = 249
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 63 NDSVVPLAATLATPEVAEKVEGEED 87
N VPLA + EVAEK++G++D
Sbjct: 118 NKDCVPLAVFMVQKEVAEKLQGKKD 142
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 375 WLVVLYAPWCQFCQ 388
W++ YAPWC CQ
Sbjct: 25 WMIEFYAPWCPACQ 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,155,898
Number of Sequences: 62578
Number of extensions: 454036
Number of successful extensions: 1185
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 30
length of query: 414
length of database: 14,973,337
effective HSP length: 101
effective length of query: 313
effective length of database: 8,652,959
effective search space: 2708376167
effective search space used: 2708376167
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)