Query 015013
Match_columns 414
No_of_seqs 453 out of 2996
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:15:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00424 APS_reduc 5'-adenyly 100.0 1E-100 3E-105 786.0 34.2 398 1-402 1-401 (463)
2 PLN02309 5'-adenylylsulfate re 100.0 1.5E-98 3E-103 770.9 34.9 381 16-402 12-395 (457)
3 KOG0189 Phosphoadenosine phosp 100.0 4.2E-70 9.2E-75 492.2 16.8 233 84-327 18-253 (261)
4 TIGR02057 PAPS_reductase phosp 100.0 5.1E-64 1.1E-68 476.0 22.2 220 88-320 1-226 (226)
5 PRK02090 phosphoadenosine phos 100.0 5.7E-60 1.2E-64 452.9 23.3 226 85-323 13-239 (241)
6 TIGR00434 cysH phosophoadenyly 100.0 4.8E-59 1E-63 438.1 21.6 209 100-321 1-212 (212)
7 COG0175 CysH 3'-phosphoadenosi 100.0 6.6E-57 1.4E-61 436.0 20.7 232 84-325 11-246 (261)
8 TIGR02055 APS_reductase thiore 100.0 1.9E-56 4.1E-61 414.3 19.3 190 121-319 2-191 (191)
9 PRK12563 sulfate adenylyltrans 100.0 6.3E-44 1.4E-48 349.5 20.3 213 99-320 25-269 (312)
10 TIGR02039 CysD sulfate adenyly 100.0 3.6E-42 7.7E-47 336.0 18.0 192 99-299 7-253 (294)
11 PRK08557 hypothetical protein; 100.0 1.5E-41 3.3E-46 346.5 19.6 187 98-297 164-359 (417)
12 PRK13794 hypothetical protein; 100.0 7.1E-41 1.5E-45 348.5 19.3 186 98-296 233-424 (479)
13 PF01507 PAPS_reduct: Phosphoa 100.0 2.2E-41 4.8E-46 305.8 12.8 170 114-295 1-174 (174)
14 PRK05253 sulfate adenylyltrans 100.0 4.7E-40 1E-44 323.3 21.1 191 99-299 15-260 (301)
15 PRK13795 hypothetical protein; 100.0 2.1E-38 4.6E-43 340.4 19.2 187 98-296 229-420 (636)
16 PRK08576 hypothetical protein; 100.0 9.7E-34 2.1E-38 290.0 18.4 196 86-296 208-407 (438)
17 cd01713 PAPS_reductase This do 100.0 8.5E-33 1.8E-37 247.4 16.7 166 114-288 1-173 (173)
18 TIGR03183 DNA_S_dndC putative 100.0 5.6E-30 1.2E-34 262.7 15.9 193 102-296 3-249 (447)
19 PRK06850 hypothetical protein; 100.0 2.9E-29 6.3E-34 260.0 15.4 193 102-296 24-268 (507)
20 COG3969 Predicted phosphoadeno 99.9 1.4E-21 3E-26 189.7 10.0 207 99-308 15-265 (407)
21 cd01992 PP-ATPase N-terminal d 99.5 6.2E-14 1.3E-18 128.3 11.4 154 114-280 1-167 (185)
22 TIGR02432 lysidine_TilS_N tRNA 99.4 7.4E-13 1.6E-17 121.9 10.9 157 114-280 1-171 (189)
23 cd01993 Alpha_ANH_like_II This 99.4 1.6E-12 3.5E-17 118.5 13.1 160 114-279 1-177 (185)
24 PRK10696 tRNA 2-thiocytidine b 99.3 3.3E-11 7.1E-16 116.9 13.2 163 101-277 13-198 (258)
25 cd01990 Alpha_ANH_like_I This 99.2 1.8E-10 3.8E-15 107.3 11.5 142 115-276 1-148 (202)
26 PF01171 ATP_bind_3: PP-loop f 99.1 2.6E-10 5.7E-15 104.7 11.0 152 114-278 1-165 (182)
27 TIGR00268 conserved hypothetic 99.1 7.8E-10 1.7E-14 106.9 14.5 151 102-277 3-161 (252)
28 COG0037 MesJ tRNA(Ile)-lysidin 99.1 3.7E-10 8.1E-15 111.0 10.7 154 112-276 21-188 (298)
29 cd03006 PDI_a_EFP1_N PDIa fami 99.1 1E-10 2.2E-15 99.7 5.4 53 351-403 8-60 (113)
30 KOG2644 3'-phosphoadenosine 5' 99.1 7.6E-11 1.6E-15 113.3 4.8 150 114-295 84-247 (282)
31 COG1606 ATP-utilizing enzymes 99.1 1.1E-09 2.3E-14 104.1 12.0 154 99-277 5-167 (269)
32 PRK00074 guaA GMP synthase; Re 99.1 2.4E-09 5.2E-14 113.4 14.6 168 113-286 216-391 (511)
33 cd01995 ExsB ExsB is a transcr 99.0 6.9E-09 1.5E-13 93.9 13.3 141 114-283 1-147 (169)
34 PRK00919 GMP synthase subunit 99.0 1.1E-08 2.3E-13 101.6 15.5 162 113-286 22-189 (307)
35 cd01712 ThiI ThiI is required 99.0 4.1E-09 8.8E-14 96.2 11.7 145 114-276 1-158 (177)
36 cd01997 GMP_synthase_C The C-t 99.0 5E-09 1.1E-13 103.5 12.8 167 114-286 1-176 (295)
37 TIGR00884 guaA_Cterm GMP synth 98.9 1.8E-08 4E-13 100.3 15.4 168 113-286 17-191 (311)
38 PRK00143 mnmA tRNA-specific 2- 98.9 1.9E-08 4.2E-13 101.6 14.9 157 114-277 2-183 (346)
39 cd03003 PDI_a_ERdj5_N PDIa fam 98.9 1.3E-09 2.9E-14 89.9 5.0 48 353-403 2-49 (101)
40 cd02993 PDI_a_APS_reductase PD 98.9 1.9E-09 4.1E-14 90.6 5.7 50 353-402 2-51 (109)
41 PRK14561 hypothetical protein; 98.9 3.5E-08 7.7E-13 91.8 13.7 141 114-272 2-146 (194)
42 KOG0190 Protein disulfide isom 98.9 2.4E-09 5.2E-14 111.1 5.9 68 333-403 348-415 (493)
43 PRK14665 mnmA tRNA-specific 2- 98.9 4E-08 8.7E-13 99.7 14.3 174 112-293 5-196 (360)
44 cd03004 PDI_a_ERdj5_C PDIa fam 98.8 3.8E-09 8.2E-14 87.5 5.2 48 353-402 2-49 (104)
45 KOG0910 Thioredoxin-like prote 98.8 2.6E-09 5.7E-14 94.2 3.8 51 354-406 45-95 (150)
46 TIGR00420 trmU tRNA (5-methyla 98.8 7.3E-08 1.6E-12 97.6 14.8 161 114-278 2-188 (352)
47 PRK10660 tilS tRNA(Ile)-lysidi 98.8 1.6E-08 3.4E-13 105.3 10.0 152 112-277 15-178 (436)
48 PRK08349 hypothetical protein; 98.8 2.7E-08 5.8E-13 92.7 10.1 147 114-275 2-159 (198)
49 PHA02278 thioredoxin-like prot 98.8 3.6E-09 7.8E-14 88.6 3.7 40 360-402 5-44 (103)
50 cd02996 PDI_a_ERp44 PDIa famil 98.8 9.1E-09 2E-13 86.0 6.1 47 353-402 2-48 (108)
51 cd01998 tRNA_Me_trans tRNA met 98.8 2.3E-07 5.1E-12 93.9 16.5 159 114-276 1-183 (349)
52 cd02954 DIM1 Dim1 family; Dim1 98.7 7.3E-09 1.6E-13 88.2 4.0 51 360-411 3-54 (114)
53 cd03002 PDI_a_MPD1_like PDI fa 98.7 1.1E-08 2.4E-13 85.1 4.7 47 354-402 2-48 (109)
54 cd02992 PDI_a_QSOX PDIa family 98.7 2.1E-08 4.5E-13 85.3 6.2 49 352-402 1-49 (114)
55 cd02985 TRX_CDSP32 TRX family, 98.7 8.1E-09 1.8E-13 86.0 3.3 43 358-401 2-44 (103)
56 KOG0907 Thioredoxin [Posttrans 98.7 8.4E-09 1.8E-13 86.9 3.2 43 370-412 19-61 (106)
57 TIGR00364 exsB protein. This p 98.7 2.7E-07 5.9E-12 86.0 13.0 162 115-282 1-184 (201)
58 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 3.3E-08 7.1E-13 81.1 6.0 49 353-403 1-49 (104)
59 cd02999 PDI_a_ERp44_like PDIa 98.7 1.5E-08 3.3E-13 84.1 4.1 42 362-404 9-50 (100)
60 TIGR00032 argG argininosuccina 98.7 1.6E-07 3.4E-12 96.3 12.3 148 114-277 1-163 (394)
61 PRK09381 trxA thioredoxin; Pro 98.7 2.4E-08 5.1E-13 83.5 5.2 51 351-403 2-52 (109)
62 cd01996 Alpha_ANH_like_III Thi 98.7 1.5E-07 3.2E-12 83.8 10.5 111 114-226 3-116 (154)
63 cd02994 PDI_a_TMX PDIa family, 98.7 3E-08 6.4E-13 81.6 5.5 44 353-401 2-45 (101)
64 PLN02347 GMP synthetase 98.7 4.2E-07 9.1E-12 96.7 15.1 175 102-286 217-415 (536)
65 TIGR00552 nadE NAD+ synthetase 98.7 4.9E-07 1.1E-11 87.3 14.3 158 102-276 11-177 (250)
66 cd02957 Phd_like Phosducin (Ph 98.6 1.8E-08 3.9E-13 85.3 3.5 52 352-403 4-55 (113)
67 cd01999 Argininosuccinate_Synt 98.6 1.5E-07 3.2E-12 96.2 10.5 151 115-279 1-166 (385)
68 PRK13980 NAD synthetase; Provi 98.6 5.1E-07 1.1E-11 88.0 13.8 154 101-275 18-180 (265)
69 cd00553 NAD_synthase NAD+ synt 98.6 5.3E-07 1.1E-11 87.0 13.6 160 102-277 12-180 (248)
70 PRK08384 thiamine biosynthesis 98.6 3.2E-07 6.9E-12 93.7 12.6 146 113-277 181-341 (381)
71 PF00085 Thioredoxin: Thioredo 98.6 6.2E-08 1.3E-12 79.1 6.0 47 354-402 1-47 (103)
72 PRK13820 argininosuccinate syn 98.6 1.5E-07 3.2E-12 96.3 9.7 149 113-277 3-164 (394)
73 KOG0190 Protein disulfide isom 98.6 2.7E-08 5.8E-13 103.4 4.2 52 350-404 23-74 (493)
74 cd02962 TMX2 TMX2 family; comp 98.6 6.3E-08 1.4E-12 86.7 6.0 50 352-402 28-77 (152)
75 TIGR00342 thiazole biosynthesi 98.6 3E-07 6.5E-12 93.8 11.6 143 113-274 173-328 (371)
76 cd02948 TRX_NDPK TRX domain, T 98.6 5.5E-08 1.2E-12 80.8 5.0 43 357-402 5-47 (102)
77 cd02963 TRX_DnaJ TRX domain, D 98.6 5.2E-08 1.1E-12 82.3 4.8 48 355-402 7-54 (111)
78 COG3118 Thioredoxin domain-con 98.6 4.5E-08 9.8E-13 95.1 4.6 51 353-403 24-74 (304)
79 PTZ00443 Thioredoxin domain-co 98.6 6.7E-08 1.4E-12 91.9 5.3 52 351-402 29-82 (224)
80 cd03001 PDI_a_P5 PDIa family, 98.6 8.5E-08 1.8E-12 78.7 5.3 48 353-402 1-48 (103)
81 cd02986 DLP Dim1 family, Dim1- 98.6 4.4E-08 9.5E-13 83.2 3.6 51 360-411 3-54 (114)
82 PLN00410 U5 snRNP protein, DIM 98.6 4.2E-08 9.2E-13 86.7 3.5 53 358-411 10-63 (142)
83 cd03005 PDI_a_ERp46 PDIa famil 98.6 1.1E-07 2.3E-12 78.0 5.5 46 354-403 2-47 (102)
84 cd02997 PDI_a_PDIR PDIa family 98.5 1.3E-07 2.8E-12 77.6 5.6 47 353-402 1-47 (104)
85 cd02989 Phd_like_TxnDC9 Phosdu 98.5 6.6E-08 1.4E-12 82.2 3.9 55 352-409 4-59 (113)
86 cd02987 Phd_like_Phd Phosducin 98.5 6.7E-08 1.5E-12 88.5 4.0 60 352-411 62-122 (175)
87 PRK01565 thiamine biosynthesis 98.5 7.1E-07 1.5E-11 91.8 11.8 168 113-306 177-357 (394)
88 PRK11106 queuosine biosynthesi 98.5 1.7E-06 3.6E-11 82.7 13.5 162 113-276 2-180 (231)
89 PRK00509 argininosuccinate syn 98.5 6.1E-07 1.3E-11 91.9 10.9 148 113-277 3-167 (399)
90 PRK04527 argininosuccinate syn 98.5 1E-06 2.3E-11 90.1 12.1 145 113-277 3-169 (400)
91 cd02956 ybbN ybbN protein fami 98.5 2E-07 4.2E-12 75.9 5.5 41 361-402 2-42 (96)
92 PLN00200 argininosuccinate syn 98.5 1E-06 2.2E-11 90.5 11.5 147 113-277 6-171 (404)
93 cd02998 PDI_a_ERp38 PDIa famil 98.5 2.2E-07 4.8E-12 76.1 5.4 47 354-402 2-48 (105)
94 cd02988 Phd_like_VIAF Phosduci 98.4 1.4E-07 3.1E-12 87.7 3.7 59 352-410 82-140 (192)
95 TIGR03573 WbuX N-acetyl sugar 98.4 3E-06 6.5E-11 85.7 12.7 109 114-224 61-172 (343)
96 PRK14664 tRNA-specific 2-thiou 98.4 3.8E-06 8.3E-11 85.3 12.8 157 112-276 5-177 (362)
97 PRK10996 thioredoxin 2; Provis 98.4 4.3E-07 9.2E-12 80.0 5.0 52 347-402 31-82 (139)
98 cd02950 TxlA TRX-like protein 98.3 5.6E-07 1.2E-11 79.6 4.8 41 359-402 10-50 (142)
99 cd03000 PDI_a_TMX3 PDIa family 98.3 5.4E-07 1.2E-11 74.8 4.3 39 360-402 7-45 (104)
100 cd02959 ERp19 Endoplasmic reti 98.3 8.2E-07 1.8E-11 76.0 5.1 35 368-402 15-49 (117)
101 KOG0908 Thioredoxin-like prote 98.3 3.8E-07 8.3E-12 86.4 2.7 53 358-411 8-60 (288)
102 cd02952 TRP14_like Human TRX-r 98.3 4E-07 8.8E-12 78.2 2.6 42 360-402 10-58 (119)
103 cd02984 TRX_PICOT TRX domain, 98.2 1.6E-06 3.4E-11 70.5 5.2 42 359-401 2-43 (97)
104 PTZ00102 disulphide isomerase; 98.2 1.9E-06 4.2E-11 90.0 7.3 50 351-402 356-405 (477)
105 cd03065 PDI_b_Calsequestrin_N 98.2 1.3E-06 2.8E-11 75.2 4.6 48 352-401 9-60 (120)
106 PF06508 QueC: Queuosine biosy 98.2 4.3E-06 9.4E-11 78.8 8.5 173 114-292 1-196 (209)
107 TIGR01295 PedC_BrcD bacterioci 98.2 1.7E-06 3.7E-11 74.6 5.3 44 354-400 8-51 (122)
108 PTZ00051 thioredoxin; Provisio 98.2 8.2E-07 1.8E-11 72.4 3.1 41 359-402 8-48 (98)
109 cd02953 DsbDgamma DsbD gamma f 98.2 1.1E-06 2.5E-11 72.7 3.6 39 361-402 3-44 (104)
110 TIGR01126 pdi_dom protein disu 98.2 1.9E-06 4E-11 70.2 4.6 43 357-402 1-43 (102)
111 cd02961 PDI_a_family Protein D 98.1 3.3E-06 7.1E-11 67.8 5.0 43 356-401 2-44 (101)
112 TIGR01130 ER_PDI_fam protein d 98.1 4E-06 8.6E-11 86.7 6.9 52 350-403 344-395 (462)
113 TIGR01130 ER_PDI_fam protein d 98.1 3.5E-06 7.5E-11 87.2 6.1 48 353-403 2-49 (462)
114 cd03007 PDI_a_ERp29_N PDIa fam 98.1 2.8E-06 6.2E-11 72.6 4.4 44 353-399 2-50 (116)
115 PRK01269 tRNA s(4)U8 sulfurtra 98.1 1.6E-05 3.6E-10 83.8 10.6 144 113-275 178-334 (482)
116 PTZ00102 disulphide isomerase; 98.1 4.8E-06 1E-10 87.0 6.3 48 352-402 32-79 (477)
117 PF03054 tRNA_Me_trans: tRNA m 98.1 2.9E-05 6.3E-10 78.7 11.3 157 114-275 2-186 (356)
118 TIGR01068 thioredoxin thioredo 98.1 4.2E-06 9E-11 67.8 4.1 43 358-402 2-44 (101)
119 cd01994 Alpha_ANH_like_IV This 98.0 3.1E-05 6.8E-10 72.1 9.8 128 114-271 1-135 (194)
120 cd02965 HyaE HyaE family; HyaE 98.0 4E-06 8.8E-11 71.1 3.4 50 353-405 11-62 (111)
121 cd02951 SoxW SoxW family; SoxW 98.0 7.6E-06 1.6E-10 70.1 4.4 28 368-395 9-37 (125)
122 cd03008 TryX_like_RdCVF Trypar 98.0 8.2E-06 1.8E-10 72.6 4.6 34 371-404 24-57 (146)
123 cd01986 Alpha_ANH_like Adenine 97.9 4.3E-05 9.4E-10 63.5 7.8 44 115-158 1-47 (103)
124 COG2117 Predicted subunit of t 97.9 3.4E-05 7.3E-10 68.9 7.4 140 114-269 2-145 (198)
125 PF02540 NAD_synthase: NAD syn 97.9 2.7E-05 5.8E-10 75.0 6.9 69 102-170 7-79 (242)
126 KOG4277 Uncharacterized conser 97.9 6.1E-06 1.3E-10 80.1 2.2 28 370-397 41-68 (468)
127 COG0482 TrmU Predicted tRNA(5- 97.9 0.00023 4.9E-09 71.7 13.0 167 113-280 4-189 (356)
128 cd02967 mauD Methylamine utili 97.8 1.7E-05 3.6E-10 66.4 4.1 31 371-401 20-50 (114)
129 PF02568 ThiI: Thiamine biosyn 97.8 9.4E-05 2E-09 69.0 9.0 142 113-274 4-161 (197)
130 cd02975 PfPDO_like_N Pyrococcu 97.8 2.2E-05 4.8E-10 66.6 4.3 32 370-401 20-51 (113)
131 TIGR02738 TrbB type-F conjugat 97.8 2.3E-05 5.1E-10 70.3 4.3 31 371-401 49-79 (153)
132 COG0603 Predicted PP-loop supe 97.8 0.00017 3.7E-09 68.1 10.2 160 114-282 4-186 (222)
133 KOG0191 Thioredoxin/protein di 97.8 2.1E-05 4.5E-10 80.6 4.5 48 353-402 145-192 (383)
134 cd02964 TryX_like_family Trypa 97.8 3E-05 6.5E-10 67.1 4.6 33 371-403 16-48 (132)
135 cd02949 TRX_NTR TRX domain, no 97.7 4.8E-05 1E-09 62.2 5.3 33 370-402 11-43 (97)
136 cd03009 TryX_like_TryX_NRX Try 97.7 3.6E-05 7.9E-10 66.2 4.6 33 371-403 17-49 (131)
137 PF13905 Thioredoxin_8: Thiore 97.7 5.8E-05 1.2E-09 61.1 4.6 31 372-402 1-31 (95)
138 cd02947 TRX_family TRX family; 97.7 7.7E-05 1.7E-09 58.4 5.1 37 361-400 2-38 (93)
139 PTZ00323 NAD+ synthase; Provis 97.6 0.00094 2E-08 66.1 13.6 150 113-275 47-211 (294)
140 KOG1731 FAD-dependent sulfhydr 97.6 1.4E-05 3.1E-10 83.6 0.2 49 351-401 38-86 (606)
141 PHA02125 thioredoxin-like prot 97.6 5.5E-05 1.2E-09 59.2 3.4 22 376-397 2-23 (75)
142 TIGR03679 arCOG00187 arCOG0018 97.6 0.00028 6.1E-09 66.9 8.8 128 116-274 1-136 (218)
143 TIGR00412 redox_disulf_2 small 97.6 3.7E-05 8E-10 60.6 2.1 27 376-402 2-28 (76)
144 PRK15412 thiol:disulfide inter 97.5 8.7E-05 1.9E-09 68.3 4.4 29 371-399 67-95 (185)
145 KOG2805 tRNA (5-methylaminomet 97.5 0.0011 2.4E-08 65.1 12.1 160 113-275 6-192 (377)
146 cd03010 TlpA_like_DsbE TlpA-li 97.5 9.6E-05 2.1E-09 63.2 4.3 31 371-401 24-54 (127)
147 cd01991 Asn_Synthase_B_C The C 97.5 0.00061 1.3E-08 65.7 10.1 108 112-226 15-130 (269)
148 PRK00876 nadE NAD synthetase; 97.5 0.0033 7.2E-08 63.1 15.3 70 102-171 21-95 (326)
149 PF13899 Thioredoxin_7: Thiore 97.5 8.9E-05 1.9E-09 59.0 3.0 28 367-394 12-39 (82)
150 cd03011 TlpA_like_ScsD_MtbDsbE 97.4 0.00017 3.6E-09 61.1 4.1 31 371-401 19-49 (123)
151 PRK14018 trifunctional thiored 97.4 0.00012 2.5E-09 77.7 3.7 32 371-402 55-86 (521)
152 TIGR00385 dsbE periplasmic pro 97.4 0.00018 3.9E-09 65.4 4.4 29 371-399 62-90 (173)
153 cd03012 TlpA_like_DipZ_like Tl 97.4 0.00016 3.4E-09 62.1 3.6 32 371-402 22-53 (126)
154 KOG0191 Thioredoxin/protein di 97.4 0.00013 2.8E-09 74.7 3.7 47 355-403 32-78 (383)
155 cd02955 SSP411 TRX domain, SSP 97.3 0.00018 3.8E-09 62.3 3.7 25 368-392 11-35 (124)
156 TIGR02740 TraF-like TraF-like 97.3 0.00014 3E-09 71.3 3.0 32 371-402 165-196 (271)
157 PRK05370 argininosuccinate syn 97.3 0.0025 5.5E-08 65.9 12.2 151 112-277 11-184 (447)
158 PRK00293 dipZ thiol:disulfide 97.3 0.00019 4.1E-09 77.4 3.5 44 358-401 459-506 (571)
159 PRK13728 conjugal transfer pro 97.2 0.00019 4.1E-09 66.1 2.7 27 376-402 73-99 (181)
160 cd02960 AGR Anterior Gradient 97.2 0.0004 8.6E-09 60.6 4.4 27 368-394 19-45 (130)
161 PRK02628 nadE NAD synthetase; 97.2 0.0038 8.2E-08 68.8 13.1 144 112-273 361-522 (679)
162 cd02966 TlpA_like_family TlpA- 97.2 0.00035 7.6E-09 56.8 3.7 32 371-402 18-49 (116)
163 PF13098 Thioredoxin_2: Thiore 97.2 0.00053 1.1E-08 57.1 4.4 30 370-399 3-32 (112)
164 TIGR02661 MauD methylamine deh 97.1 0.00042 9.2E-09 64.1 4.2 30 371-400 73-102 (189)
165 PF08534 Redoxin: Redoxin; In 97.1 0.00065 1.4E-08 59.4 5.0 32 371-402 27-59 (146)
166 TIGR00411 redox_disulf_1 small 97.1 0.00047 1E-08 53.9 3.6 28 375-402 2-29 (82)
167 PTZ00056 glutathione peroxidas 97.1 0.00054 1.2E-08 64.0 4.2 32 371-402 38-69 (199)
168 COG0526 TrxA Thiol-disulfide i 97.1 0.00059 1.3E-08 54.7 3.7 32 372-403 32-63 (127)
169 PRK13981 NAD synthetase; Provi 97.0 0.0099 2.1E-07 63.7 13.9 69 102-170 269-341 (540)
170 cd00340 GSH_Peroxidase Glutath 97.0 0.00062 1.4E-08 60.4 4.0 31 371-402 21-51 (152)
171 PRK03147 thiol-disulfide oxido 97.0 0.0012 2.5E-08 59.3 5.7 32 371-402 60-91 (173)
172 cd02973 TRX_GRX_like Thioredox 97.0 0.00063 1.4E-08 51.5 3.1 25 376-400 3-27 (67)
173 TIGR02540 gpx7 putative glutat 97.0 0.0008 1.7E-08 59.7 4.2 33 371-403 21-53 (153)
174 cd02982 PDI_b'_family Protein 97.0 0.00062 1.3E-08 55.7 3.1 31 372-402 12-42 (103)
175 COG0519 GuaA GMP synthase, PP- 96.9 0.0036 7.7E-08 60.8 8.2 172 103-289 11-198 (315)
176 PLN02399 phospholipid hydroper 96.9 0.0011 2.3E-08 63.7 4.3 33 371-403 98-130 (236)
177 PLN02919 haloacid dehalogenase 96.8 0.00087 1.9E-08 77.2 4.1 32 371-402 419-450 (1057)
178 PF00764 Arginosuc_synth: Argi 96.8 0.0021 4.6E-08 65.8 6.2 154 116-284 1-169 (388)
179 PF00733 Asn_synthase: Asparag 96.8 0.011 2.5E-07 55.7 10.9 120 102-226 4-134 (255)
180 PRK00768 nadE NAD synthetase; 96.8 0.012 2.7E-07 57.5 10.8 69 102-170 27-107 (268)
181 PLN02412 probable glutathione 96.7 0.0016 3.5E-08 59.0 4.3 33 371-403 28-60 (167)
182 TIGR02187 GlrX_arch Glutaredox 96.7 0.0019 4.1E-08 60.9 4.4 41 357-400 120-161 (215)
183 TIGR00290 MJ0570_dom MJ0570-re 96.6 0.01 2.2E-07 56.6 8.6 122 114-271 2-132 (223)
184 COG0137 ArgG Argininosuccinate 96.5 0.036 7.8E-07 56.3 12.1 147 113-282 5-174 (403)
185 cd01984 AANH_like Adenine nucl 96.4 0.013 2.7E-07 46.6 6.8 50 115-170 1-54 (86)
186 TIGR02187 GlrX_arch Glutaredox 96.2 0.0039 8.4E-08 58.7 3.5 32 371-402 18-52 (215)
187 TIGR01536 asn_synth_AEB aspara 96.2 0.038 8.2E-07 58.1 11.2 107 112-226 253-370 (467)
188 TIGR01626 ytfJ_HI0045 conserve 96.2 0.0039 8.5E-08 57.6 3.1 28 371-398 58-85 (184)
189 COG0301 ThiI Thiamine biosynth 96.1 0.04 8.7E-07 56.4 10.3 145 113-274 176-332 (383)
190 COG1365 Predicted ATPase (PP-l 96.1 0.03 6.4E-07 52.6 8.4 137 113-276 61-204 (255)
191 cd02968 SCO SCO (an acronym fo 96.0 0.0086 1.9E-07 51.7 4.2 33 371-403 21-54 (142)
192 PTZ00256 glutathione peroxidas 95.9 0.0091 2E-07 54.8 4.4 33 371-403 39-72 (183)
193 KOG3425 Uncharacterized conser 95.9 0.012 2.6E-07 50.3 4.5 41 360-400 13-61 (128)
194 TIGR02200 GlrX_actino Glutared 95.9 0.0076 1.6E-07 46.3 3.1 22 376-397 2-23 (77)
195 KOG0914 Thioredoxin-like prote 95.9 0.007 1.5E-07 56.8 3.3 50 352-402 124-174 (265)
196 PF00578 AhpC-TSA: AhpC/TSA fa 95.8 0.015 3.2E-07 48.9 5.0 32 371-402 24-56 (124)
197 cd02969 PRX_like1 Peroxiredoxi 95.8 0.01 2.2E-07 53.5 4.3 32 371-402 24-55 (171)
198 TIGR02180 GRX_euk Glutaredoxin 95.8 0.007 1.5E-07 47.4 2.5 23 376-398 1-23 (84)
199 KOG2501 Thioredoxin, nucleored 95.6 0.0071 1.5E-07 54.2 2.2 33 371-403 32-64 (157)
200 TIGR00289 conserved hypothetic 95.5 0.032 7E-07 53.1 6.5 56 114-170 2-64 (222)
201 COG4232 Thiol:disulfide interc 95.5 0.0084 1.8E-07 63.7 2.8 34 361-395 464-497 (569)
202 cd02970 PRX_like2 Peroxiredoxi 95.5 0.021 4.6E-07 49.5 4.8 31 372-402 23-54 (149)
203 PRK10606 btuE putative glutath 95.5 0.014 3.1E-07 53.9 3.9 32 371-403 24-55 (183)
204 cd03018 PRX_AhpE_like Peroxire 95.3 0.023 5E-07 49.5 4.4 30 373-402 29-59 (149)
205 TIGR02196 GlrX_YruB Glutaredox 95.2 0.017 3.8E-07 43.4 3.0 21 376-396 2-22 (74)
206 COG0171 NadE NAD synthase [Coe 95.1 0.22 4.8E-06 48.8 11.1 162 102-279 14-189 (268)
207 PRK00522 tpx lipid hydroperoxi 95.1 0.021 4.6E-07 51.6 3.7 31 371-401 43-74 (167)
208 TIGR03137 AhpC peroxiredoxin. 95.1 0.026 5.5E-07 52.1 4.2 32 371-402 30-62 (187)
209 cd03015 PRX_Typ2cys Peroxiredo 95.1 0.026 5.6E-07 51.1 4.2 33 371-403 28-61 (173)
210 cd03014 PRX_Atyp2cys Peroxired 95.0 0.023 5.1E-07 49.3 3.7 31 371-401 25-56 (143)
211 cd02971 PRX_family Peroxiredox 94.9 0.033 7.1E-07 47.9 4.1 32 371-402 21-53 (140)
212 cd03017 PRX_BCP Peroxiredoxin 94.8 0.039 8.5E-07 47.4 4.5 32 371-402 22-54 (140)
213 cd02958 UAS UAS family; UAS is 94.7 0.034 7.4E-07 46.7 3.7 26 367-392 12-37 (114)
214 KOG0913 Thiol-disulfide isomer 94.5 0.0073 1.6E-07 57.3 -1.1 42 352-398 24-65 (248)
215 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.045 9.7E-07 44.4 3.6 30 372-401 12-41 (89)
216 KOG2840 Uncharacterized conser 94.3 0.02 4.2E-07 56.9 1.5 156 112-274 51-231 (347)
217 COG2102 Predicted ATPases of P 94.1 0.16 3.5E-06 48.1 7.1 126 114-274 2-136 (223)
218 PF01902 ATP_bind_4: ATP-bindi 94.1 0.049 1.1E-06 51.7 3.6 56 114-170 2-64 (218)
219 cd01659 TRX_superfamily Thiore 94.0 0.045 9.6E-07 38.4 2.6 22 376-397 1-22 (69)
220 PF06110 DUF953: Eukaryotic pr 93.7 0.11 2.4E-06 44.6 4.9 40 362-401 8-55 (119)
221 smart00594 UAS UAS domain. 93.6 0.091 2E-06 44.9 4.2 27 366-392 21-47 (122)
222 cd03419 GRX_GRXh_1_2_like Glut 93.4 0.075 1.6E-06 41.4 3.0 22 376-397 2-23 (82)
223 PRK09437 bcp thioredoxin-depen 92.9 0.15 3.2E-06 45.0 4.5 33 371-403 29-62 (154)
224 cd02976 NrdH NrdH-redoxin (Nrd 92.8 0.12 2.6E-06 38.7 3.2 22 376-397 2-23 (73)
225 KOG1622 GMP synthase [Nucleoti 92.7 0.51 1.1E-05 48.9 8.5 71 102-172 219-293 (552)
226 PF14595 Thioredoxin_9: Thiore 92.6 0.17 3.7E-06 44.1 4.4 44 356-401 27-70 (129)
227 COG0367 AsnB Asparagine syntha 92.3 0.73 1.6E-05 49.6 9.7 58 112-170 230-291 (542)
228 PRK10382 alkyl hydroperoxide r 91.9 0.2 4.4E-06 46.4 4.2 32 371-402 30-62 (187)
229 cd02066 GRX_family Glutaredoxi 91.9 0.17 3.7E-06 37.5 3.1 22 376-397 2-23 (72)
230 TIGR03104 trio_amidotrans aspa 91.5 1.9 4.2E-05 46.9 11.9 107 112-226 260-377 (589)
231 TIGR03108 eps_aminotran_1 exos 91.2 1.2 2.6E-05 48.7 10.0 107 113-226 259-371 (628)
232 PF03190 Thioredox_DsbH: Prote 90.8 0.18 3.9E-06 45.7 2.7 27 366-392 31-57 (163)
233 PRK15000 peroxidase; Provision 90.0 0.38 8.2E-06 44.9 4.2 32 371-402 33-65 (200)
234 PRK11200 grxA glutaredoxin 1; 89.3 0.39 8.4E-06 38.1 3.2 25 375-399 2-26 (85)
235 PTZ00077 asparagine synthetase 89.0 3 6.5E-05 45.4 10.7 108 112-226 237-363 (586)
236 PF00462 Glutaredoxin: Glutare 88.9 0.53 1.1E-05 34.6 3.4 21 376-396 1-21 (60)
237 PRK13190 putative peroxiredoxi 88.7 0.5 1.1E-05 44.1 4.0 31 372-402 27-58 (202)
238 PHA03050 glutaredoxin; Provisi 88.5 0.44 9.4E-06 40.2 3.1 22 376-397 15-36 (108)
239 TIGR02183 GRXA Glutaredoxin, G 88.3 0.47 1E-05 37.9 3.0 22 376-397 2-23 (86)
240 PF13728 TraF: F plasmid trans 88.1 0.48 1E-05 44.8 3.5 41 362-403 111-151 (215)
241 cd03016 PRX_1cys Peroxiredoxin 88.1 0.51 1.1E-05 44.0 3.6 29 374-402 28-56 (203)
242 PTZ00137 2-Cys peroxiredoxin; 88.1 0.62 1.4E-05 45.5 4.3 32 371-402 97-129 (261)
243 PRK09431 asnB asparagine synth 87.6 3 6.5E-05 45.1 9.6 108 112-226 227-355 (554)
244 TIGR02189 GlrX-like_plant Glut 86.9 0.63 1.4E-05 38.4 3.1 22 376-397 10-31 (99)
245 PLN02549 asparagine synthase ( 86.3 2.6 5.6E-05 45.8 8.2 55 113-170 226-292 (578)
246 TIGR02190 GlrX-dom Glutaredoxi 86.2 0.89 1.9E-05 35.6 3.5 25 372-396 6-30 (79)
247 PRK13599 putative peroxiredoxi 86.0 0.78 1.7E-05 43.4 3.6 31 372-402 28-59 (215)
248 KOG0573 Asparagine synthase [A 85.1 2.1 4.5E-05 44.6 6.3 77 89-166 226-318 (520)
249 PRK13191 putative peroxiredoxi 84.8 1.1 2.4E-05 42.4 4.0 31 372-402 33-64 (215)
250 PLN02339 NAD+ synthase (glutam 84.7 3.8 8.2E-05 45.6 8.7 65 106-170 341-445 (700)
251 cd03027 GRX_DEP Glutaredoxin ( 84.3 1.1 2.4E-05 34.3 3.2 22 376-397 3-24 (73)
252 PRK13189 peroxiredoxin; Provis 84.0 1.2 2.6E-05 42.3 3.9 31 372-402 35-66 (222)
253 TIGR02181 GRX_bact Glutaredoxi 83.7 1 2.2E-05 34.9 2.7 22 376-397 1-22 (79)
254 PF13462 Thioredoxin_4: Thiore 82.9 2.1 4.6E-05 37.4 4.8 32 370-401 10-41 (162)
255 cd02972 DsbA_family DsbA famil 82.6 0.74 1.6E-05 35.9 1.6 23 376-398 1-23 (98)
256 cd03418 GRX_GRXb_1_3_like Glut 82.1 1.5 3.4E-05 33.3 3.2 21 376-396 2-22 (75)
257 cd03020 DsbA_DsbC_DsbG DsbA fa 81.5 1.5 3.3E-05 40.4 3.4 26 371-396 76-101 (197)
258 PTZ00253 tryparedoxin peroxida 80.7 2.1 4.6E-05 39.7 4.2 33 371-403 35-68 (199)
259 PRK13703 conjugal pilus assemb 80.4 1.7 3.6E-05 42.2 3.4 33 372-404 143-175 (248)
260 TIGR02739 TraF type-F conjugat 79.4 1.9 4E-05 42.1 3.4 33 371-403 149-181 (256)
261 PRK10329 glutaredoxin-like pro 79.2 2.2 4.8E-05 33.8 3.2 21 376-396 3-23 (81)
262 PF02114 Phosducin: Phosducin; 77.8 3.1 6.8E-05 40.7 4.5 57 352-408 125-182 (265)
263 cd03029 GRX_hybridPRX5 Glutare 77.3 2.9 6.2E-05 31.8 3.3 22 376-397 3-24 (72)
264 TIGR00365 monothiol glutaredox 77.2 3.5 7.5E-05 33.8 3.9 26 372-397 11-40 (97)
265 KOG1706 Argininosuccinate synt 76.3 23 0.00049 35.5 9.8 52 113-166 6-58 (412)
266 PF10281 Ish1: Putative stress 75.1 2.8 6.1E-05 28.4 2.4 21 259-279 3-23 (38)
267 TIGR02194 GlrX_NrdH Glutaredox 74.5 3 6.5E-05 31.8 2.8 20 377-396 2-21 (72)
268 cd03028 GRX_PICOT_like Glutare 73.3 3.9 8.3E-05 32.9 3.2 26 372-397 7-36 (90)
269 PRK10638 glutaredoxin 3; Provi 72.0 4 8.7E-05 32.0 3.0 22 376-397 4-25 (83)
270 PRK10877 protein disulfide iso 71.5 4.9 0.00011 38.4 4.0 28 371-398 106-133 (232)
271 PF00837 T4_deiodinase: Iodoth 71.2 8 0.00017 37.2 5.3 58 351-408 81-138 (237)
272 PF13192 Thioredoxin_3: Thiore 71.1 5.3 0.00011 31.0 3.4 25 377-401 3-27 (76)
273 PRK10824 glutaredoxin-4; Provi 68.8 6.8 0.00015 33.5 3.8 26 372-397 14-43 (115)
274 PRK10954 periplasmic protein d 68.2 2.9 6.3E-05 39.0 1.6 30 372-401 37-69 (207)
275 COG0695 GrxC Glutaredoxin and 67.2 5.7 0.00012 31.4 2.9 22 376-397 3-24 (80)
276 TIGR00269 conserved hypothetic 62.0 6.5 0.00014 32.8 2.4 25 253-277 3-27 (104)
277 KOG1752 Glutaredoxin and relat 60.9 8.7 0.00019 32.2 3.0 24 372-396 13-36 (104)
278 PTZ00062 glutaredoxin; Provisi 60.2 11 0.00024 35.4 3.9 18 380-397 124-141 (204)
279 cd03013 PRX5_like Peroxiredoxi 59.6 12 0.00025 33.3 3.8 30 373-402 31-61 (155)
280 cd02991 UAS_ETEA UAS family, E 58.5 8.8 0.00019 32.6 2.7 24 367-390 12-39 (116)
281 KOG3170 Conserved phosducin-li 58.3 15 0.00033 34.5 4.3 53 352-404 91-143 (240)
282 PRK11657 dsbG disulfide isomer 58.0 13 0.00029 35.9 4.2 28 371-398 116-143 (251)
283 PRK06702 O-acetylhomoserine am 57.0 97 0.0021 32.5 10.7 81 99-181 61-144 (432)
284 cd02977 ArsC_family Arsenate R 55.8 11 0.00024 31.0 2.8 21 377-397 2-22 (105)
285 PF07796 DUF1638: Protein of u 55.7 35 0.00076 30.6 6.3 43 139-181 120-163 (166)
286 TIGR02826 RNR_activ_nrdG3 anae 52.4 38 0.00083 30.0 5.9 48 116-170 64-115 (147)
287 KOG0373 Serine/threonine speci 50.5 41 0.00089 32.2 5.9 89 127-219 61-164 (306)
288 COG0626 MetC Cystathionine bet 49.2 1.2E+02 0.0027 31.5 9.7 75 99-175 63-138 (396)
289 cd03035 ArsC_Yffb Arsenate Red 48.3 17 0.00037 30.2 2.8 20 377-396 2-21 (105)
290 PF02677 DUF208: Uncharacteriz 45.6 2.5E+02 0.0054 25.9 10.4 92 122-216 8-108 (176)
291 PF02966 DIM1: Mitosis protein 45.4 53 0.0011 28.8 5.4 39 362-401 11-49 (133)
292 PF01053 Cys_Met_Meta_PP: Cys/ 44.2 1.5E+02 0.0034 30.5 9.6 67 114-182 71-138 (386)
293 cd03036 ArsC_like Arsenate Red 42.0 24 0.00053 29.5 2.8 20 377-396 2-21 (111)
294 PRK09028 cystathionine beta-ly 42.0 1.6E+02 0.0035 30.4 9.4 57 115-173 78-134 (394)
295 TIGR01324 cysta_beta_ly_B cyst 40.1 1.9E+02 0.0041 29.6 9.5 70 102-173 53-123 (377)
296 COG0468 RecA RecA/RadA recombi 39.2 93 0.002 30.7 6.8 60 115-176 65-125 (279)
297 cd03060 GST_N_Omega_like GST_N 39.1 29 0.00062 26.0 2.6 20 378-397 3-22 (71)
298 PRK15317 alkyl hydroperoxide r 38.9 42 0.00092 35.7 4.7 52 344-398 89-142 (517)
299 TIGR01326 OAH_OAS_sulfhy OAH/O 38.1 2.9E+02 0.0062 28.6 10.6 61 110-172 69-129 (418)
300 PRK08574 cystathionine gamma-s 38.1 2.3E+02 0.0049 29.0 9.8 77 102-181 56-133 (385)
301 PLN02673 quinolinate synthetas 37.7 97 0.0021 34.4 7.1 55 54-110 53-108 (724)
302 PRK08133 O-succinylhomoserine 37.5 3E+02 0.0066 28.1 10.6 56 115-172 78-133 (390)
303 PRK07050 cystathionine beta-ly 36.8 2.6E+02 0.0057 28.6 10.0 71 101-173 67-138 (394)
304 TIGR01617 arsC_related transcr 36.4 33 0.00071 28.9 2.8 20 377-396 2-21 (117)
305 TIGR03143 AhpF_homolog putativ 36.1 49 0.0011 35.6 4.7 53 343-398 448-502 (555)
306 cd06130 DNA_pol_III_epsilon_li 35.5 77 0.0017 27.3 5.1 48 99-146 63-112 (156)
307 PRK08114 cystathionine beta-ly 34.4 3.2E+02 0.007 28.3 10.2 72 100-173 63-135 (395)
308 KOG3414 Component of the U4/U6 34.2 72 0.0016 27.9 4.4 39 363-402 15-53 (142)
309 PF08423 Rad51: Rad51; InterP 34.1 94 0.002 30.0 5.9 45 119-165 47-98 (256)
310 PRK05967 cystathionine beta-ly 34.0 3.1E+02 0.0066 28.4 9.9 71 101-173 66-137 (395)
311 PRK06372 translation initiatio 33.3 2.9E+02 0.0062 26.9 9.0 70 100-174 74-143 (253)
312 PF11009 DUF2847: Protein of u 32.9 90 0.0019 26.3 4.8 43 358-401 6-48 (105)
313 TIGR01325 O_suc_HS_sulf O-succ 32.7 3.7E+02 0.008 27.3 10.3 70 101-172 56-126 (380)
314 KOG2603 Oligosaccharyltransfer 32.2 68 0.0015 32.2 4.5 50 349-398 37-90 (331)
315 PF10087 DUF2325: Uncharacteri 32.1 1.8E+02 0.0039 23.4 6.4 76 101-179 12-91 (97)
316 cd03032 ArsC_Spx Arsenate Redu 31.2 55 0.0012 27.4 3.3 22 376-397 2-23 (115)
317 cd03040 GST_N_mPGES2 GST_N fam 31.0 54 0.0012 24.7 3.0 22 376-397 2-23 (77)
318 PRK10076 pyruvate formate lyas 30.6 83 0.0018 29.7 4.7 63 97-162 18-89 (213)
319 PRK07740 hypothetical protein; 29.3 1.1E+02 0.0023 29.5 5.3 69 99-167 127-202 (244)
320 KOG1672 ATP binding protein [P 28.9 47 0.001 31.1 2.6 47 359-408 74-120 (211)
321 cd03051 GST_N_GTT2_like GST_N 28.9 45 0.00098 24.5 2.2 20 378-397 3-22 (74)
322 KOG2594 Uncharacterized conser 28.2 3.6E+02 0.0077 27.8 8.8 28 249-276 238-265 (396)
323 cd00570 GST_N_family Glutathio 26.9 51 0.0011 23.2 2.1 20 378-397 3-22 (71)
324 COG1751 Uncharacterized conser 26.3 1.2E+02 0.0027 27.4 4.6 56 113-169 29-88 (186)
325 PRK08248 O-acetylhomoserine am 26.1 3.2E+02 0.007 28.5 8.7 70 101-172 66-136 (431)
326 cd02981 PDI_b_family Protein D 26.1 88 0.0019 24.6 3.5 29 370-401 15-43 (97)
327 PF08821 CGGC: CGGC domain; I 25.7 1.3E+02 0.0027 25.4 4.5 63 107-169 29-104 (107)
328 PRK07810 O-succinylhomoserine 25.6 3.6E+02 0.0078 27.8 8.8 70 101-172 72-142 (403)
329 PRK06234 methionine gamma-lyas 24.8 3.8E+02 0.0082 27.5 8.8 69 102-172 67-136 (400)
330 PRK08134 O-acetylhomoserine am 24.8 6.1E+02 0.013 26.5 10.4 72 100-173 65-137 (433)
331 TIGR01328 met_gam_lyase methio 24.1 6.4E+02 0.014 25.7 10.3 71 101-173 61-132 (391)
332 cd03059 GST_N_SspA GST_N famil 23.6 71 0.0015 23.6 2.4 21 377-397 2-22 (73)
333 COG2515 Acd 1-aminocyclopropan 23.4 3.7E+02 0.008 27.1 7.8 67 100-166 168-240 (323)
334 PRK06767 methionine gamma-lyas 23.1 6.8E+02 0.015 25.4 10.2 68 102-171 64-132 (386)
335 PRK05939 hypothetical protein; 22.9 4.5E+02 0.0098 27.0 8.9 70 100-172 48-118 (397)
336 KOG1467 Translation initiation 22.6 5.3E+02 0.011 27.7 9.1 69 99-170 345-416 (556)
337 PF12105 SpoU_methylas_C: SpoU 22.6 20 0.00043 26.8 -0.8 27 257-283 23-49 (57)
338 KOG3125 Thymidine kinase [Nucl 22.6 92 0.002 29.4 3.3 36 135-170 102-137 (234)
339 PRK11121 nrdG anaerobic ribonu 22.4 1.7E+02 0.0038 25.8 5.0 46 115-161 67-121 (154)
340 COG2143 Thioredoxin-related pr 22.2 1.1E+02 0.0025 27.7 3.7 32 363-394 33-64 (182)
341 PF04592 SelP_N: Selenoprotein 22.2 1.1E+02 0.0024 29.5 3.8 42 370-413 24-65 (238)
342 PRK05994 O-acetylhomoserine am 22.1 7.4E+02 0.016 25.6 10.4 62 109-172 74-135 (427)
343 PF07021 MetW: Methionine bios 22.1 2.2E+02 0.0047 26.7 5.7 81 87-168 77-163 (193)
344 PRK08045 cystathionine gamma-s 21.8 5.2E+02 0.011 26.4 9.1 58 112-171 66-123 (386)
345 COG0106 HisA Phosphoribosylfor 21.6 1.6E+02 0.0036 28.4 4.9 70 101-170 111-197 (241)
346 COG1636 Uncharacterized protei 21.6 5.6E+02 0.012 24.0 8.1 91 115-208 6-104 (204)
347 cd03037 GST_N_GRX2 GST_N famil 21.5 68 0.0015 23.8 1.9 20 378-397 3-22 (71)
348 PF00536 SAM_1: SAM domain (St 21.3 51 0.0011 24.2 1.1 28 259-286 2-30 (64)
349 PRK06176 cystathionine gamma-s 21.3 6.5E+02 0.014 25.6 9.6 69 101-172 52-121 (380)
350 cd08757 SAM_PNT_ESE Sterile al 21.2 62 0.0014 24.8 1.6 37 259-295 4-44 (68)
351 PRK07812 O-acetylhomoserine am 21.2 4.6E+02 0.0099 27.5 8.6 70 100-171 70-140 (436)
352 PRK06434 cystathionine gamma-l 21.1 4.8E+02 0.01 26.8 8.6 72 100-173 65-137 (384)
353 KOG0053 Cystathionine beta-lya 21.0 6.5E+02 0.014 26.4 9.4 70 99-173 77-150 (409)
354 PF15608 PELOTA_1: PELOTA RNA 21.0 1.3E+02 0.0028 25.1 3.6 25 151-175 20-45 (100)
355 TIGR03140 AhpF alkyl hydropero 21.0 1.3E+02 0.0028 32.0 4.6 43 353-398 100-143 (515)
356 cd08539 SAM_PNT-ESE-3-like Ste 20.8 53 0.0011 25.9 1.2 38 258-295 6-47 (74)
357 PRK08247 cystathionine gamma-s 20.7 6.5E+02 0.014 25.3 9.5 67 102-171 55-122 (366)
358 PRK07811 cystathionine gamma-s 20.5 5.2E+02 0.011 26.3 8.7 69 101-171 63-132 (388)
359 PRK05968 hypothetical protein; 20.4 7.3E+02 0.016 25.3 9.8 71 101-173 65-136 (389)
360 KOG2640 Thioredoxin [Function 20.4 33 0.00072 34.3 -0.0 33 370-402 74-106 (319)
361 PRK00443 nagB glucosamine-6-ph 20.3 1.7E+02 0.0037 27.9 4.9 64 102-165 22-99 (261)
362 cd03146 GAT1_Peptidase_E Type 20.0 3.1E+02 0.0068 25.4 6.5 103 117-220 3-120 (212)
No 1
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=100.00 E-value=1.5e-100 Score=786.05 Aligned_cols=398 Identities=78% Similarity=1.271 Sum_probs=359.3
Q ss_pred CccccccccccccCc-ccccCCcccccccccccccccccccccccc--hhccccccCCCCCCCCCCCCcccccccccCcc
Q 015013 1 MALAVTSSNSISSSS-FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRSLVRPLNAEPKRNDSVVPLAATLATPE 77 (414)
Q Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (414)
||++++|+++++++. .++.++++++|++|+|+++++++.++.+.+ +++||++|+|+++++++++++++.+|++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (463)
T TIGR00424 1 MALAVTSSSTAISGISLSRSGESTEAKAAQIGSFRLLDRPHTISPSVNLSRRRLSVKPLNAEPKRNESIVPSAATTVAPE 80 (463)
T ss_pred CchhhhhHHhhhhccccccccccchhhhhhccccccccccccchhhhhhhcccccccccccccccccccccchhhccCcc
Confidence 999997766555443 233347889999999999999999855444 89999999999999999999999999999998
Q ss_pred hhccccChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHH
Q 015013 78 VAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 157 (414)
Q Consensus 78 ~~~~~~~~~~~~~l~~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~ 157 (414)
.++..-+..+++.+|++|++++|+++|+|+++.|++++++++|||+|++||||+.+.+++++|||+|||++|||||+|++
T Consensus 81 ~~~~~~~~~~l~~l~~~l~~~~~~eil~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d 160 (463)
T TIGR00424 81 VEEKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD 160 (463)
T ss_pred cccccCCHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHH
Confidence 88555556899999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceec
Q 015013 158 EVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 237 (414)
Q Consensus 158 ~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~ 237 (414)
+++++||++|+++.|+....+++...+|++.|+.+++++||.++|++||+|+|+++++||||+||+||+++|+.++++++
T Consensus 161 ~v~~~ygl~l~~~~p~~~~~~~~~~~~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~ 240 (463)
T TIGR00424 161 AVEKQYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQV 240 (463)
T ss_pred HHHHHhCCceEEECCCcchHHHHHHhcCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccc
Confidence 99999999999999988777777888999888888889999999999999999999999999999999558999999999
Q ss_pred CCCCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccce
Q 015013 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 317 (414)
Q Consensus 238 d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~EC 317 (414)
|+.+++.+++.++++|+|||++||.+|||.||++|+|||||||++||+||||+|||+||.+|+|+|+|||||++..||||
T Consensus 241 d~~~~~~~~~~~~~iKvnPLa~Wt~~dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~EC 320 (463)
T TIGR00424 241 DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKEC 320 (463)
T ss_pred cccccccccCCCceEEEeecccCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccC
Confidence 98776655555669999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCcccccccccCCCCCCCCCcchhhhccCCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHH
Q 015013 318 GLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 318 Glh~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~ 397 (414)
|||..+++... .+.....+...++.|||+++.|+.|+.+||++++++.+.+++|||+||||||++|+.|.|.|+++
T Consensus 321 GlH~~~~~~~~----~~~~~~~~~~~~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eel 396 (463)
T TIGR00424 321 GLHKGNIKEET----LDGAVNGNGSDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLEL 396 (463)
T ss_pred CCCCCCccccc----cchhhhhccccccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHH
Confidence 99998776543 22444456778899999999999999999999987667899999999999999999999999999
Q ss_pred HHHHH
Q 015013 398 FQIIA 402 (414)
Q Consensus 398 ~~i~a 402 (414)
++.+.
T Consensus 397 A~~~~ 401 (463)
T TIGR00424 397 AEKLA 401 (463)
T ss_pred HHHhc
Confidence 88875
No 2
>PLN02309 5'-adenylylsulfate reductase
Probab=100.00 E-value=1.5e-98 Score=770.93 Aligned_cols=381 Identities=75% Similarity=1.267 Sum_probs=349.2
Q ss_pred ccccCCcccccccccccccccccccccccc--hhcccc-ccCCCCCCCCCCCCcccccccccCcchhccccChhhHHHHH
Q 015013 16 FALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRS-LVRPLNAEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFA 92 (414)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (414)
++++.++++++++|+|+++++++.++.... .+++|+ +++|+++++++++++++.+|++++++.+++.+ ..+++.+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dl~~ln 90 (457)
T PLN02309 12 SSRSGASSESKAKQIGSLRLLDRGGLSARAYSLSGKRSSAAKPLNAQPAARQAMIPSAATAVAEVPEEEGE-VEDFEKLA 90 (457)
T ss_pred cccccchhhhhhhhcccccccccccchhhhhhhhhhccccccccccccccccccccccccccCCccccccC-hhhHHHHH
Confidence 444458889999999999999999855444 677776 99999999999999999999999998877655 47899999
Q ss_pred HHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 93 KELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 93 ~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
++|+.++|+++|+|+++.|++++++++|||+|++||||+.+.+++++|||+|||++|||||+|+++++++||++|+++.|
T Consensus 91 ~~l~~~~~~eil~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P 170 (457)
T PLN02309 91 KELENASPLEIMDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFP 170 (457)
T ss_pred HHhhcCCHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeE
Q 015013 173 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (414)
Q Consensus 173 ~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ 252 (414)
+....+++...+|++.|+++++++||.++|++||+|+|+++++||||+||+||.++|++++++++|+.+++.+++.++++
T Consensus 171 ~~~~~~~~~~~~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~l 250 (457)
T PLN02309 171 DAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLV 250 (457)
T ss_pred CcchHHHHHHhcCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCee
Confidence 98888888888999888887889999999999999999999999999999999548999999999988776665667799
Q ss_pred EEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccceeccCCCccccccccc
Q 015013 253 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVN 332 (414)
Q Consensus 253 ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGlh~~~~~~~~~~~~ 332 (414)
|+|||++||.+|||.||++|+|||||||++||+||||+|||+|+.+|+|+|+|||||+|..|||||||..+++...
T Consensus 251 KvnPl~~Wt~~dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~---- 326 (457)
T PLN02309 251 KWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED---- 326 (457)
T ss_pred EEcccccCCHHHHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998766543
Q ss_pred CCCCCCCCCcchhhhccCCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 333 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 333 ~~~~~~~~~~~~~~dl~~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++.+.++++++.+|+|+++.|+.++.++|++++.+.+.+++|||+||||||++|+.|.|.|+++++.+.
T Consensus 327 -~~~~~~~~~~~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~ 395 (457)
T PLN02309 327 -NGAANDNGNAAVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLA 395 (457)
T ss_pred -ccccccccccccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhc
Confidence 355556688889999999999999999999998777899999999999999999999999999888764
No 3
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-70 Score=492.16 Aligned_cols=233 Identities=59% Similarity=0.917 Sum_probs=224.6
Q ss_pred ChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 015013 84 GEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 163 (414)
Q Consensus 84 ~~~~~~~l~~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~ 163 (414)
+.++++.+|++|++++|+|||+|++.+|++.+.++|||.+|.++++|+.+.+.++++||+|||.+|||||++.+.++++|
T Consensus 18 ~~E~~e~l~kqL~~~sP~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY 97 (261)
T KOG0189|consen 18 EVEDLEELNKQLENLSPQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKY 97 (261)
T ss_pred cHHHHHHHHHHHhhCCHHHHHHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCC
Q 015013 164 G-IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPV 240 (414)
Q Consensus 164 g-l~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~ 240 (414)
| ++|++++|+..+.+..+..+|.++||+++++.||+++||+|++|+++++ .+||||.|++|| ++|..+|+++.|+.
T Consensus 98 ~~i~I~~~~pd~~e~ea~~~~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~ 176 (261)
T KOG0189|consen 98 GNIRIHVYFPDAVEVEALFASKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPV 176 (261)
T ss_pred CceEEEEEcchhHHHHHHHHhccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCc
Confidence 9 9999999999999999999999999999999999999999999999998 799999999999 69999999999997
Q ss_pred CccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccceecc
Q 015013 241 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 320 (414)
Q Consensus 241 ~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGlh 320 (414)
| +++|+|||++|+..|||.||+.+++|||.|+++||+||||+|||+||.+|+|||+|||||+ .|||||||
T Consensus 177 f--------ellK~NPlaN~~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlH 246 (261)
T KOG0189|consen 177 F--------ELLKINPLANWEFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLH 246 (261)
T ss_pred c--------ceeeecccccccHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhcccc
Confidence 7 4899999999999999999999999999999999999999999999999999999999998 69999999
Q ss_pred CCCcccc
Q 015013 321 KGNIKQE 327 (414)
Q Consensus 321 ~~~~~~~ 327 (414)
..+++..
T Consensus 247 kg~~s~~ 253 (261)
T KOG0189|consen 247 KGNQSKF 253 (261)
T ss_pred Ccchhhh
Confidence 9988653
No 4
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=100.00 E-value=5.1e-64 Score=476.02 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=195.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHH-HHHHHhcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhC-
Q 015013 88 FEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVAL-IEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFG- 164 (414)
Q Consensus 88 ~~~l~~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvl-L~L~~~~~-~~i~VvflDTG~~fpET~~~v~~l~~~~g- 164 (414)
++++|++|+.++++++|+|+++.|+++++++|||||||+| |||+.++. ++++|||+|||++|||||+|++++.++||
T Consensus 1 ~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~ 80 (226)
T TIGR02057 1 LDELNEQLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQ 80 (226)
T ss_pred ChhHHHhhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 3679999999999999999999999889999999999976 59999987 89999999999999999999999999999
Q ss_pred -CcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCCC
Q 015013 165 -IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 241 (414)
Q Consensus 165 -l~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~~ 241 (414)
+++.++.|... ...+...+|... +..+.++||.++|++||+++++++ ++||+|+|++||. .|++++.++.|+.
T Consensus 81 ~l~v~~~~~~~~-~~~~~~~~G~~~-~~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~- 156 (226)
T TIGR02057 81 TLNLYKYDGCES-EADFEAKYGKLL-WQKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ- 156 (226)
T ss_pred ceEEEEeCCchh-HHHHHHhcCCCc-cccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC-
Confidence 55555555543 334455667543 345678999999999999999985 5899999999996 9999999887653
Q ss_pred ccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccceecc
Q 015013 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 320 (414)
Q Consensus 242 ~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGlh 320 (414)
++++|+|||++||..|||.||++|+|||||||++||+||||+|||+||.+|+|+|+|||+ |..|||||||
T Consensus 157 -------~~~~kv~Pi~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh 226 (226)
T TIGR02057 157 -------NGILKVNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH 226 (226)
T ss_pred -------CCeEEEeehhhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999984 6569999999
No 5
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=100.00 E-value=5.7e-60 Score=452.86 Aligned_cols=226 Identities=45% Similarity=0.812 Sum_probs=201.3
Q ss_pred hhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 015013 85 EEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 163 (414)
Q Consensus 85 ~~~~~~l~~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~ 163 (414)
..++.++|++|+.++++++|++++++|+++++|+|||||||+|| ||+.+.++++++||+|||++||||++|+++++++|
T Consensus 13 ~~~~~~~~~~~~~~~~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~ 92 (241)
T PRK02090 13 ALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERL 92 (241)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999998899999999999875 99999999999999999999999999999999999
Q ss_pred CCcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCcc
Q 015013 164 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEG 243 (414)
Q Consensus 164 gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~ 243 (414)
|++++++.|............+.+...-.+..+||.++|+.||+++++++++|++|+|++||. .|+.++.++.++
T Consensus 93 gl~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~~---- 167 (241)
T PRK02090 93 LLNLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEIDG---- 167 (241)
T ss_pred CCCEEEECCCccHHHHHHHcCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeecC----
Confidence 999999998865544433332443211146679999999999999999988899999999997 899888776542
Q ss_pred ccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccceeccCCC
Q 015013 244 LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 323 (414)
Q Consensus 244 ~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGlh~~~ 323 (414)
+..+++||++|+++|||.|++.++|||||||++||+||||++||.++.+|+++|+|||| |..|||||||..+
T Consensus 168 ------~~~rv~Pi~~Wt~~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~~~ 239 (241)
T PRK02090 168 ------GRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHEGN 239 (241)
T ss_pred ------CeEEEeehhhCCHHHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999997 5559999999754
No 6
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=100.00 E-value=4.8e-59 Score=438.13 Aligned_cols=209 Identities=33% Similarity=0.572 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 015013 100 PLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 178 (414)
Q Consensus 100 a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~ 178 (414)
++++|++++++|+++++++|||||||+|| ||+.+..++++|||+|||.+||||++|+++++++||++|+++.|.... .
T Consensus 1 ~~~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~ 79 (212)
T TIGR00434 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-A 79 (212)
T ss_pred CHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-H
Confidence 46899999999997899999999999875 999999999999999999999999999999999999999999987553 3
Q ss_pred HHHHhcCCCCCCcccchhhhcchhchhHHHHhccCc--EEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEe
Q 015013 179 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 179 ~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~--~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~P 256 (414)
.....+|.. +|..+.++||.++|++||.++++++. +||+|+|++||+ .|+++..++.++. .+.++++|
T Consensus 80 ~~~~~~g~~-~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~P 149 (212)
T TIGR00434 80 EQAAKYGDK-LWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLP 149 (212)
T ss_pred HHHHhcCCC-ccccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEee
Confidence 344556633 34556789999999999999999876 999999999997 9998887765542 25789999
Q ss_pred CccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccccccCCCCccceeccC
Q 015013 257 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 321 (414)
Q Consensus 257 L~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGlh~ 321 (414)
|++|+++|||.||++++|||||||++||+||||++||.|+.+|+++|+||| .|..|||||||.
T Consensus 150 I~dWt~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~--~~~~~~ecg~~~ 212 (212)
T TIGR00434 150 LIDWTWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRW--KGKAKTECGLHE 212 (212)
T ss_pred hhhCCHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccC--CCCCCcCCCCCC
Confidence 999999999999999999999999999999999999999999999999998 566799999995
No 7
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.6e-57 Score=435.96 Aligned_cols=232 Identities=40% Similarity=0.712 Sum_probs=205.8
Q ss_pred ChhhHHHHHHHhccCCHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHH
Q 015013 84 GEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 162 (414)
Q Consensus 84 ~~~~~~~l~~~l~~~~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~ 162 (414)
....+..+++.|++.+++++++++++.|++.++++|||||||+|+ ||+.+...+++|+|+|||++||||++|++++.++
T Consensus 11 ~~~~~~~~~~~le~~~~~~i~~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~ 90 (261)
T COG0175 11 MSENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEE 90 (261)
T ss_pred hhhhhHHHHHHHHhcCHHHHHHHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHH
Confidence 345677899999999999999999999999889999999999875 9999999999999999999999999999999999
Q ss_pred hCCcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCC
Q 015013 163 FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPV 240 (414)
Q Consensus 163 ~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~ 240 (414)
||++++++.|+....+. ..++...+.....+|||.++|++||+++|+++ ++||+|+||+||. +|+++++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~ 167 (261)
T COG0175 91 YGLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSE 167 (261)
T ss_pred cCCeEEEecCccchhhh--hhcccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccC
Confidence 99999999888765444 33343333333345899999999999999988 7999999999997 9999999988754
Q ss_pred CccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCC-CCcccccccccCCCCccceec
Q 015013 241 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGL 319 (414)
Q Consensus 241 ~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~-g~~~R~GRW~w~~~~k~ECGl 319 (414)
+ ++.+|++||+|||..|||.||..++|||||||++||.||||++||+++.+ |+++|+|||||+...++|||+
T Consensus 168 ~-------~~~~rv~Pl~~Wt~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~ 240 (261)
T COG0175 168 F-------GESIRVNPLADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGL 240 (261)
T ss_pred c-------CCeEEEcchhcCCHHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhcc
Confidence 3 36899999999999999999999999999999999999999999999998 999999999988878999999
Q ss_pred cCCCcc
Q 015013 320 HKGNIK 325 (414)
Q Consensus 320 h~~~~~ 325 (414)
|.....
T Consensus 241 ~~~~~~ 246 (261)
T COG0175 241 HRADDP 246 (261)
T ss_pred cccccc
Confidence 976443
No 8
>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase. This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.
Probab=100.00 E-value=1.9e-56 Score=414.31 Aligned_cols=190 Identities=51% Similarity=0.986 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcc
Q 015013 121 GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRV 200 (414)
Q Consensus 121 GGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~ 200 (414)
|..|.|+|||+.++.++++|||+|||++|||||+|+++++++||++++++.|.....+++...+|.+.|+.+.+++||.+
T Consensus 2 ~~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~ 81 (191)
T TIGR02055 2 GAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGI 81 (191)
T ss_pred ChHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHH
Confidence 45566678999999999999999999999999999999999999999999887655666677788887766558899999
Q ss_pred hhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhh
Q 015013 201 RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 280 (414)
Q Consensus 201 ~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLY 280 (414)
+|++||.+++++.++||+|+|++||. .|+.++.++.|+.+ +.++++||++||..|||.||++|+|||||||
T Consensus 82 ~K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY 152 (191)
T TIGR02055 82 RKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLH 152 (191)
T ss_pred HhHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHH
Confidence 99999999999999999999999997 99999888877532 4789999999999999999999999999999
Q ss_pred hCCCCCCCCccCCCCCCCCCcccccccccCCCCccceec
Q 015013 281 SQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL 319 (414)
Q Consensus 281 d~Gy~SiGC~~CT~~v~~g~~~R~GRW~w~~~~k~ECGl 319 (414)
++||+||||++||.|+.+|+++|+|||||++..||||||
T Consensus 153 ~~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~ 191 (191)
T TIGR02055 153 DRGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL 191 (191)
T ss_pred HcCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence 999999999999999999999999999999889999997
No 9
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=6.3e-44 Score=349.54 Aligned_cols=213 Identities=19% Similarity=0.323 Sum_probs=168.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~----~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.++++|+++++.|++ ++++|||||||+|| ||+.++ +++++++|+|||++||||++|+++++++||++++++.|.
T Consensus 25 esi~ilrea~~~f~~-~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~ 103 (312)
T PRK12563 25 ESIHILREVVAECSK-PVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHNP 103 (312)
T ss_pred HHHHHHHHHHHhcCC-cEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecCh
Confidence 489999999999875 78999999999875 999986 678999999999999999999999999999999988775
Q ss_pred hHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCcee-------cCCCCcc-
Q 015013 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFEG- 243 (414)
Q Consensus 174 ~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e-------~d~~~~~- 243 (414)
.. + ..|... +..+..+||.++|++||+++++ ++++||+|+|+||+. +|++..+++ ||+....
T Consensus 104 ~~-~-----~~G~~~-~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qrP 175 (312)
T PRK12563 104 DG-I-----ARGIVP-FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQRP 175 (312)
T ss_pred HH-H-----HhCCCc-ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccCh
Confidence 32 1 135533 3456789999999999999997 568999999999996 999988776 5553210
Q ss_pred -------ccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCC--------CCccCCCCCCCCCcc--cccc
Q 015013 244 -------LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI--------GCEPCTRPVLPGQHE--REGR 306 (414)
Q Consensus 244 -------~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~Si--------GC~~CT~~v~~g~~~--R~GR 306 (414)
.....+..+|++||++||+.|||.||+.++|||||||..+++.+ +|-.|+.++.+||.. |..|
T Consensus 176 elw~~~n~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~~~g~~~~~~~~~~~~~~~e~~~~~~~r 255 (312)
T PRK12563 176 ELWSLYNARLRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAKRRPVVERDGLLIMVDDERTPLRPGETPQQRKVR 255 (312)
T ss_pred hhhhhccccccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcCCCceEEECCeEEeccccccCCCCCCccccceeE
Confidence 01112458999999999999999999999999999999875554 566666666666653 5666
Q ss_pred cccCCCCccceecc
Q 015013 307 WWWEDAKAKECGLH 320 (414)
Q Consensus 307 W~w~~~~k~ECGlh 320 (414)
|+.-|-.--.|++.
T Consensus 256 ~Rtlg~~~~t~~v~ 269 (312)
T PRK12563 256 FRTLGCYPLTGAVE 269 (312)
T ss_pred eeccCCccccCccC
Confidence 65555444444443
No 10
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=100.00 E-value=3.6e-42 Score=336.01 Aligned_cols=192 Identities=23% Similarity=0.395 Sum_probs=160.4
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~----~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
+++++|+++++.|++ ++++|||||||+|| ||+.++ +++++++|+|||++||||++|+++++++||++++++.|+
T Consensus 7 esi~ilRe~~~~f~~-~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~ 85 (294)
T TIGR02039 7 EAIHIIREVAAEFER-PVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNE 85 (294)
T ss_pred HHHHHHHHHHHhcCC-cEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 589999999999975 67899999999875 999987 567999999999999999999999999999999998775
Q ss_pred hHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCce-------ecCCCCcc-
Q 015013 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV-------QVDPVFEG- 243 (414)
Q Consensus 174 ~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~-------e~d~~~~~- 243 (414)
.. ..+|...+ ..+..+||.++|++||+++++ ++++||+|+|+||+. .|++..++ +||+....
T Consensus 86 ~~------~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~P 157 (294)
T TIGR02039 86 EG------IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQRP 157 (294)
T ss_pred hh------hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccCc
Confidence 32 23566444 345668999999999999996 568999999999996 99987665 34543110
Q ss_pred -------ccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhC---------------------------------C
Q 015013 244 -------LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ---------------------------------G 283 (414)
Q Consensus 244 -------~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~---------------------------------G 283 (414)
.....+..+|++||++||+.|||.||..++|||||||.. +
T Consensus 158 elw~~~~~~~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r 237 (294)
T TIGR02039 158 ELWNLYNGRISKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVR 237 (294)
T ss_pred hhhhccccccccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCccccccee
Confidence 000124579999999999999999999999999999953 8
Q ss_pred CCCCCCccCCCCCCCC
Q 015013 284 YISIGCEPCTRPVLPG 299 (414)
Q Consensus 284 y~SiGC~~CT~~v~~g 299 (414)
|+++||+|||.+|...
T Consensus 238 ~rt~g~~~~t~~~~s~ 253 (294)
T TIGR02039 238 FRTLGCYPLTGAIESD 253 (294)
T ss_pred ecccCcccCCCcccCC
Confidence 9999999999999865
No 11
>PRK08557 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=346.52 Aligned_cols=187 Identities=25% Similarity=0.395 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHcCC---cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 98 ASPLEIMDRALEKFGN---DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 98 ~~a~eil~~a~~~~~~---~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.+++++|++++++|+. .++++|||||||+++ +|+.+..+++++||+|||.+||||++|+++++++||++++++.+.
T Consensus 164 ~~ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~ 243 (417)
T PRK08557 164 ENSLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD 243 (417)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech
Confidence 3689999999999963 588999999999875 888888889999999999999999999999999999999988754
Q ss_pred hHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhcc---C--cEEEecccccCCccCcCCCCceecCCCCccccCCC
Q 015013 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---L--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV 248 (414)
Q Consensus 174 ~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~---~--~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~ 248 (414)
.+.+.+...|.| ..+.+|||.++|+.||.+++++ . .+|++|+|++||. +|++++..+.++. .
T Consensus 244 --~f~~~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~-------~ 310 (417)
T PRK08557 244 --NFWENLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF-------I 310 (417)
T ss_pred --HHHHHHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------c
Confidence 344456667764 4567899999999999999976 2 4899999999997 9999876554421 1
Q ss_pred CCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCC
Q 015013 249 GSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 297 (414)
Q Consensus 249 ~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~ 297 (414)
++.++++||++||..|||.||+.|+|||||||++||.||||++||++..
T Consensus 311 ~~~~~i~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~ 359 (417)
T PRK08557 311 DFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN 359 (417)
T ss_pred cCceeEEecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence 3467899999999999999999999999999999999999999999953
No 12
>PRK13794 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-41 Score=348.54 Aligned_cols=186 Identities=27% Similarity=0.401 Sum_probs=164.1
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechHHHHHH-HHHHHhc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 015013 98 ASPLEIMDRALEKFGNDIAIAFSGAEDVAL-IEYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 175 (414)
Q Consensus 98 ~~a~eil~~a~~~~~~~i~vafSGGKDSvl-L~L~~~~-~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~ 175 (414)
..++++|+++++.++++++|+|||||||++ |||+.+. +.++.++|+|||.+||||++|+++++++||++++++.|+
T Consensus 233 ~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~-- 310 (479)
T PRK13794 233 RNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE-- 310 (479)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH--
Confidence 368999999999999899999999999987 5888887 788999999999999999999999999999999998776
Q ss_pred HHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhcc----CcEEEecccccCCccCcCCCCceecCCCCccccCCCCCe
Q 015013 176 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG----LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (414)
Q Consensus 176 ~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~----~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~ 251 (414)
.+.+.+..+|.| ..+.+|||.++|++||++++++ ..+|++|+|++||. .|+.++.++.++.. ++.
T Consensus 311 ~f~~~~~~~G~P---~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~~~~~~~~~-------~~~ 379 (479)
T PRK13794 311 EFWEKLEEYGPP---ARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKPRIWRNPYI-------KKQ 379 (479)
T ss_pred HHHHHHHhcCCC---CCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCcccccccCc-------CCc
Confidence 444555666654 4567899999999999999975 25899999999997 99999877655422 357
Q ss_pred EEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCC
Q 015013 252 VKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (414)
Q Consensus 252 ~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v 296 (414)
++++||++||..|||.||..++|||||||++||.||||++||...
T Consensus 380 ~~~~PI~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~ 424 (479)
T PRK13794 380 ILAAPILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME 424 (479)
T ss_pred EEEechHhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence 899999999999999999999999999999999999999999974
No 13
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=100.00 E-value=2.2e-41 Score=305.83 Aligned_cols=170 Identities=37% Similarity=0.715 Sum_probs=126.5
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~ 192 (414)
.++|+|||||||++| ||+.+...+++++|+|||.+||||++|++++.++||+++.++.+.....+... ..+.+ ..
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~---~~ 76 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFI-LYGWP---SK 76 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHH-HHHHS---TT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhccc-ccccc---ch
Confidence 378999999999875 99999888889999999999999999999999999999998888766433332 22211 11
Q ss_pred cch-hhhcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHHHHH
Q 015013 193 GHQ-ECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 269 (414)
Q Consensus 193 ~~~-~Cc~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi 269 (414)
..+ +||..+|++|++++++++ .++++|+|++||. .|+.....+.+..+ ++.++++||++||++|||+||
T Consensus 77 ~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi 148 (174)
T PF01507_consen 77 LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYI 148 (174)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHH
Confidence 222 699999999999999876 4999999999997 99988777766432 348899999999999999999
Q ss_pred HhCCCCCChhhhCCCCCCCCccCCCC
Q 015013 270 RTMDVPINSLHSQGYISIGCEPCTRP 295 (414)
Q Consensus 270 ~~~~lP~npLYd~Gy~SiGC~~CT~~ 295 (414)
+.++||+||||++||.|+||++||.|
T Consensus 149 ~~~~l~~~~lY~~g~~r~GC~~C~~~ 174 (174)
T PF01507_consen 149 KANGLPYNPLYDKGYSRVGCWPCTRP 174 (174)
T ss_dssp HHHT--B-HHHHCT-SS--BTTTB--
T ss_pred HHhcCCCcHHHHCcCCCcCCccCCCC
Confidence 99999999999999999999999975
No 14
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=100.00 E-value=4.7e-40 Score=323.34 Aligned_cols=191 Identities=25% Similarity=0.462 Sum_probs=158.7
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhc----CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~----~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.++++|+++++.|+ +++|+|||||||++| ||+.+. +.+++++|+|||++||||++|+++++++||++++++.+.
T Consensus 15 esi~iLrea~~~f~-~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~ 93 (301)
T PRK05253 15 ESIHILREVAAEFE-NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNP 93 (301)
T ss_pred HHHHHHHHHHHhCC-CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCh
Confidence 58999999999996 599999999999875 999886 457999999999999999999999999999999988765
Q ss_pred hHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCcee-------cCCCC---
Q 015013 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVF--- 241 (414)
Q Consensus 174 ~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e-------~d~~~--- 241 (414)
.. ...|...+ ..+..+||..+|+.||.++++ ++++|++|+|+||+. .|++..+++ ||+..
T Consensus 94 ~~------i~~g~~~~-~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~P 165 (301)
T PRK05253 94 EG------IARGINPF-RHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQRP 165 (301)
T ss_pred HH------HhcCCCCC-CCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccCh
Confidence 21 13455433 335579999999999999997 568999999999996 999866553 44321
Q ss_pred ------ccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhh---------CC-----------------------
Q 015013 242 ------EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS---------QG----------------------- 283 (414)
Q Consensus 242 ------~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd---------~G----------------------- 283 (414)
++. ...+..++++||++||+.|||.||+.++|||||||. .|
T Consensus 166 elw~~~~~~-~~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r 244 (301)
T PRK05253 166 ELWNLYNGR-INKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVR 244 (301)
T ss_pred hhhhhcccc-ccCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeeee
Confidence 111 122458999999999999999999999999999998 45
Q ss_pred CCCCCCccCCCCCCCC
Q 015013 284 YISIGCEPCTRPVLPG 299 (414)
Q Consensus 284 y~SiGC~~CT~~v~~g 299 (414)
|+|+||+|||.+|...
T Consensus 245 ~r~~g~~~~t~~~~s~ 260 (301)
T PRK05253 245 FRTLGCYPCTGAVESE 260 (301)
T ss_pred eeccCCccCCCcccCC
Confidence 9999999999998765
No 15
>PRK13795 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=340.41 Aligned_cols=187 Identities=26% Similarity=0.418 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 98 ASPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 98 ~~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
..++++|+++++.++.+++|+|||||||++| ||+.+...++.++|+|||.+||||++|+++++++||++++++.+...
T Consensus 229 ~~ai~~Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~- 307 (636)
T PRK13795 229 KEAVNFIRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDA- 307 (636)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHh-
Confidence 3689999999998887899999999999875 99999888899999999999999999999999999999999887633
Q ss_pred HHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC----cEEEecccccCCccCcCCCCceecCCCCccccCCCCCeE
Q 015013 177 VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (414)
Q Consensus 177 ~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~----~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ 252 (414)
+.+.+...|. +..+.+|||.++|+.|+++++++. .+|++|+|++||. .|++.+.++.++. .++.+
T Consensus 308 f~~~~~~~g~---P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~~~~~~-------~~~~~ 376 (636)
T PRK13795 308 FWRAVEKFGP---PARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRVWRNPW-------VPNQI 376 (636)
T ss_pred HHHhhhccCC---CccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCcccccCCC-------CCCcE
Confidence 3344445554 455688999999999999999764 3899999999997 9999887765532 24678
Q ss_pred EEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCC
Q 015013 253 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (414)
Q Consensus 253 ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v 296 (414)
+++||++||..|||.||..++|||||||++||.||||++||.+.
T Consensus 377 ~~~PI~~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~ 420 (636)
T PRK13795 377 GASPIQDWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS 420 (636)
T ss_pred EEechHhCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence 99999999999999999999999999999999999999999984
No 16
>PRK08576 hypothetical protein; Provisional
Probab=100.00 E-value=9.7e-34 Score=289.99 Aligned_cols=196 Identities=20% Similarity=0.305 Sum_probs=151.4
Q ss_pred hhHHHHHHHhccCCHHHHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh
Q 015013 86 EDFEQFAKELENASPLEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 163 (414)
Q Consensus 86 ~~~~~l~~~l~~~~a~eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~ 163 (414)
+.+.++|+.+-+. -++.....+++|+ .+++|+|||||||+++ |++.+...++.++|+|||.+||+|++++++++++|
T Consensus 208 ~~~~e~N~~~le~-~e~~~~~~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae~L 286 (438)
T PRK08576 208 EKLIEANREVLEA-FEKASIKFLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAEKL 286 (438)
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHHHc
Confidence 4455667655221 2223344566665 3799999999999874 88888766799999999999999999999999999
Q ss_pred CCcEEEEcCChHHHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCCC
Q 015013 164 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 241 (414)
Q Consensus 164 gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~~ 241 (414)
|+++++. .. ........+|.+ .. ...||..+|+.||.++++++ ++|++|.|++||. .|...+.+..+..
T Consensus 287 GI~lii~--~v-~~~~~~~~~g~p---~~-~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~~~- 357 (438)
T PRK08576 287 GVDLIRA--GV-DVPMPIEKYGMP---TH-SNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVERKT- 357 (438)
T ss_pred CCCEEEc--cc-CHHHHhhhcCCC---Cc-ccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCccccccc-
Confidence 9998772 21 122233445543 22 33577789999999999854 6899999999996 8887765543321
Q ss_pred ccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCC
Q 015013 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (414)
Q Consensus 242 ~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v 296 (414)
+.++..+++||++|+++|||.|++.++||+||||++||.||||++||...
T Consensus 358 -----~~~~v~rI~PL~~Wte~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~ 407 (438)
T PRK08576 358 -----NFGKILVVMPIKFWSGAMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR 407 (438)
T ss_pred -----CCCCeEEEeChhhCCHHHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence 12468899999999999999999999999999999999999999998764
No 17
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=100.00 E-value=8.5e-33 Score=247.38 Aligned_cols=166 Identities=40% Similarity=0.711 Sum_probs=135.5
Q ss_pred cEEEEechHHHHHHH-HHHHhcCC---CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH-HHHhcCCCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA-LVRSKGLFS 188 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~---~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~-~~~~~G~~~ 188 (414)
+|+|+|||||||++| ||+.+... ++.++|+|||.+||+|++|++++++.||++++++.+....... .....+ ..
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~ 79 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKG-FP 79 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhc-cC
Confidence 488999999999875 99988766 8999999999999999999999999999999988776543211 111111 22
Q ss_pred CCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHH
Q 015013 189 FYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 266 (414)
Q Consensus 189 ~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw 266 (414)
++....++||..+|..|+.++++ +..++++|+|+||+. .|..+...... ...++..+++||++|+.+|||
T Consensus 80 ~~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~-------~~~~~~~~~~Pl~~w~~~di~ 151 (173)
T cd01713 80 LPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTD-------DGKGGILKVNPLLDWTYEDVW 151 (173)
T ss_pred CccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCcccccc-------CCCCCcEEEcchhcCCHHHHH
Confidence 34456789999999999999998 567999999999996 77766543111 112457889999999999999
Q ss_pred HHHHhCCCCCChhhhCCCCCCC
Q 015013 267 NFLRTMDVPINSLHSQGYISIG 288 (414)
Q Consensus 267 ~Yi~~~~lP~npLYd~Gy~SiG 288 (414)
+|++.+++|+||||++||.|+|
T Consensus 152 ~~~~~~~l~~~~ly~~g~~~~g 173 (173)
T cd01713 152 AYLARHGLPYNPLYDQGYRSIG 173 (173)
T ss_pred HHHHHcCCCCCHHHHcCCCCCC
Confidence 9999999999999999999998
No 18
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=99.97 E-value=5.6e-30 Score=262.65 Aligned_cols=193 Identities=17% Similarity=0.254 Sum_probs=141.8
Q ss_pred HHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhc---------CCCeEEEEEeCCCCcHHHHHHHHHHH-------HHhC
Q 015013 102 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFG 164 (414)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~---------~~~i~VvflDTG~~fpET~~~v~~l~-------~~~g 164 (414)
+-|+.++...+.+++|+|||||||+++ +|+.++ .+.+.|+|.|||++||+|++|++++. +++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~ 82 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQG 82 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555655567789999999999874 766653 24689999999999999999997643 5567
Q ss_pred CcE--EEEcCChH-HHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC------cEEEecccccCCccCcCCCCc-
Q 015013 165 IRI--EYMFPDAV-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEIPV- 234 (414)
Q Consensus 165 l~i--~~~~P~~~-~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~------~~~itGiRrdES~~~Ra~~~~- 234 (414)
+++ +++.|... .++..+.++|.|. +....+|||..+|+.|+++++++. .++++|+|++||. +|++...
T Consensus 83 lpi~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k 160 (447)
T TIGR03183 83 LPIEPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEK 160 (447)
T ss_pred CCeEEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhh
Confidence 665 46678643 3444455677653 345678999999999999998743 5899999999997 9988521
Q ss_pred eecCC--CCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCC-------hhhhC------------------CCCCC
Q 015013 235 VQVDP--VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN-------SLHSQ------------------GYISI 287 (414)
Q Consensus 235 ~e~d~--~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~n-------pLYd~------------------Gy~Si 287 (414)
.+... .....+...++.+.++||.+|+.+|||.||..+++|+. .||.. |..|.
T Consensus 161 ~e~~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRf 240 (447)
T TIGR03183 161 HESGSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRF 240 (447)
T ss_pred hccccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCC
Confidence 11000 00011122346789999999999999999999999864 55643 78999
Q ss_pred CCccCCCCC
Q 015013 288 GCEPCTRPV 296 (414)
Q Consensus 288 GC~~CT~~v 296 (414)
|||.||...
T Consensus 241 GCw~Ct~v~ 249 (447)
T TIGR03183 241 GCWVCTMVS 249 (447)
T ss_pred CeeeCcCcc
Confidence 999999773
No 19
>PRK06850 hypothetical protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=260.03 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=141.7
Q ss_pred HHHHHHHHHcCCcEEEEechHHHHHH-HHHHHhc---------CCCeEEEEEeCCCCcHHHHHHHHHHH-------HHhC
Q 015013 102 EIMDRALEKFGNDIAIAFSGAEDVAL-IEYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFG 164 (414)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDSvl-L~L~~~~---------~~~i~VvflDTG~~fpET~~~v~~l~-------~~~g 164 (414)
+-|+..+...+.+++|+|||||||++ |+|+.+. .+.+.|+|.|||.+||+|++|++++. +++|
T Consensus 24 ~~i~~~Y~~~~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~g 103 (507)
T PRK06850 24 EEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQG 103 (507)
T ss_pred HHHHHHHhcCCCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444444334568999999999987 4766552 23689999999999999999988764 4668
Q ss_pred CcE--EEEcCChH-HHHHHHHhcCCCCCCcccchhhhcchhchhHHHHhccC------cEEEecccccCCccCcCCC-Cc
Q 015013 165 IRI--EYMFPDAV-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL------RAWITGQRKDQSPGTRSEI-PV 234 (414)
Q Consensus 165 l~i--~~~~P~~~-~~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~------~~~itGiRrdES~~~Ra~~-~~ 234 (414)
++| +++.|... .++..+.++|+|. |....+|||..+|+.|+++++++. .++++|+|++||. +|++. ..
T Consensus 104 lpi~~~~v~P~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m~~ 181 (507)
T PRK06850 104 LPITPHKLTPKINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVMAK 181 (507)
T ss_pred CceEEEeeCCCcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhhhh
Confidence 776 45678643 3444455677653 455778999999999999998642 5899999999997 89885 22
Q ss_pred eecCCCCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCC-------ChhhhC------------------CCCCCCC
Q 015013 235 VQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHSQ------------------GYISIGC 289 (414)
Q Consensus 235 ~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~-------npLYd~------------------Gy~SiGC 289 (414)
.+.+......+...++.+.++||.+|+..|||.||..+++|+ +.||.. |-.|.||
T Consensus 182 ~~~~~~rl~~~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGC 261 (507)
T PRK06850 182 HEIEGSRLSRHTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFGC 261 (507)
T ss_pred hcccCcceeeccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCCc
Confidence 233211111122235678899999999999999999998886 567764 5579999
Q ss_pred ccCCCCC
Q 015013 290 EPCTRPV 296 (414)
Q Consensus 290 ~~CT~~v 296 (414)
|.||...
T Consensus 262 wvCt~v~ 268 (507)
T PRK06850 262 WVCTVVT 268 (507)
T ss_pred ccccccc
Confidence 9999863
No 20
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=189.66 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHh----cCC-CeEEEEEeCCCCcHHHHHHHHHHHHHh-CC-c--EE
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL----TGR-PFRVFSLDTGRLNPETYRFFDEVEKHF-GI-R--IE 168 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~----~~~-~i~VvflDTG~~fpET~~~v~~l~~~~-gl-~--i~ 168 (414)
.++++|+++++.|+. |+|||||||||.|| ||+.+ .++ +|.|+|+|-...|..|.+|+.++.+.| ++ + ..
T Consensus 15 A~~eRl~~if~~f~~-VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yW 93 (407)
T COG3969 15 AAIERLEWIFNTFPR-VCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYW 93 (407)
T ss_pred HHHHHHHHHHhcCCe-EEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceE
Confidence 368999999999974 99999999999874 77655 455 699999999999999999999999975 43 2 23
Q ss_pred EEcCChHH-----HHHH--HHhcCCC-----CCCc-----ccchhhhcchh------chhHHHHhccC---cEEEecccc
Q 015013 169 YMFPDAVE-----VQAL--VRSKGLF-----SFYE-----DGHQECCRVRK------VRPLRRALKGL---RAWITGQRK 222 (414)
Q Consensus 169 ~~~P~~~~-----~~~~--~~~~G~~-----~~~~-----~~~~~Cc~~~K------v~Pl~ral~~~---~~~itGiRr 222 (414)
+..|-... .+.. ..+.|.. .+|+ ++...+-...+ +.-+.+.+.+. .++++|+|+
T Consensus 94 vcLPl~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRa 173 (407)
T COG3969 94 VCLPLTTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRA 173 (407)
T ss_pred EEeehhcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecc
Confidence 44554321 0000 0000100 0000 00011111111 22234444432 589999999
Q ss_pred cCCccCcCCCCc----ee-cCC-CCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCC
Q 015013 223 DQSPGTRSEIPV----VQ-VDP-VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV 296 (414)
Q Consensus 223 dES~~~Ra~~~~----~e-~d~-~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v 296 (414)
|||. +|...-. .. .|+ .+...+...+....+.||+||..+|||.|..+++.+||||||+.|.- |--+--..|
T Consensus 174 dESl-NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~MRV 251 (407)
T COG3969 174 DESL-NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQMRV 251 (407)
T ss_pred hhhH-HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhhccc
Confidence 9997 8864311 11 121 12222223456899999999999999999999999999999998865 643332222
Q ss_pred C--CCCcccccccc
Q 015013 297 L--PGQHEREGRWW 308 (414)
Q Consensus 297 ~--~g~~~R~GRW~ 308 (414)
. -|.+.|.|.|.
T Consensus 252 c~Pfgd~qr~gL~L 265 (407)
T COG3969 252 CEPFGDEQRKGLWL 265 (407)
T ss_pred cCCCChhhhcccch
Confidence 1 36778998874
No 21
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=99.53 E-value=6.2e-14 Score=128.28 Aligned_cols=154 Identities=15% Similarity=0.163 Sum_probs=107.2
Q ss_pred cEEEEechHHHHHHH-HHHHhcC----CCeEEEEEeCCCCcH--HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTG----RPFRVFSLDTGRLNP--ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~----~~i~VvflDTG~~fp--ET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+|+|++|||+||+++ +++.+.. .++.++|+|+|..+. ++.++++++++.+|++++++.... ..+
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~- 71 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVAL--------APK- 71 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeecc--------ccC-
Confidence 489999999999875 8877754 379999999998774 899999999999999998762110 001
Q ss_pred CCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCC--CCcc--ccCCCCCeEEEEeCccc
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEG--LEGGVGSLVKWNPVANV 260 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~--~~~~--~~~~~~~~~ki~PL~dW 260 (414)
.......+|...+..-|.++.. +++.+++|.+.++.. .+.....+.... .... ......+...++||.+|
T Consensus 72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~ 147 (185)
T cd01992 72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI 147 (185)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence 1112335677777777777765 567899999999874 332111110000 0000 00112456789999999
Q ss_pred cHHHHHHHHHhCCCCCChhh
Q 015013 261 KGNDIWNFLRTMDVPINSLH 280 (414)
Q Consensus 261 t~~DVw~Yi~~~~lP~npLY 280 (414)
+++||+.|.+.++||+.+-+
T Consensus 148 ~k~eI~~~~~~~~l~~~~~~ 167 (185)
T cd01992 148 TRAEIEAYLRENGLPWWEDP 167 (185)
T ss_pred CHHHHHHHHHHcCCCeEECC
Confidence 99999999999999976654
No 22
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=99.43 E-value=7.4e-13 Score=121.87 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=102.9
Q ss_pred cEEEEechHHHHHHH-HHHHhc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~----~~~i~VvflDTG~~f--pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+|+|++|||+||+++ +++.+. +.++.++++|+|... ++..+.++++++.+|++++++.-+..... ...+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~- 76 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKK- 76 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccC-
Confidence 489999999999875 777663 557999999999864 56788999999999999877642211110 1111
Q ss_pred CCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecC-----CCCccccCCCCCeEEEEeCcc
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVD-----PVFEGLEGGVGSLVKWNPVAN 259 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d-----~~~~~~~~~~~~~~ki~PL~d 259 (414)
......|...+..-|.++.+ +++.+++|.+.++.. .+.-+..+... ..........++...++||.+
T Consensus 77 -----~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~ 150 (189)
T TIGR02432 77 -----KNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG 150 (189)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence 11223356666666666655 567999999999864 32111111000 000000000114667999999
Q ss_pred ccHHHHHHHHHhCCCCCChhh
Q 015013 260 VKGNDIWNFLRTMDVPINSLH 280 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP~npLY 280 (414)
|+++||+.|.+.++||+..-+
T Consensus 151 ~~k~ei~~~~~~~~lp~~~~~ 171 (189)
T TIGR02432 151 ISKSEIEEYLKENGLPWFEDE 171 (189)
T ss_pred CCHHHHHHHHHHcCCCeeeCC
Confidence 999999999999999986654
No 23
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=99.43 E-value=1.6e-12 Score=118.52 Aligned_cols=160 Identities=17% Similarity=0.205 Sum_probs=101.2
Q ss_pred cEEEEechHHHHHHH-HHHHhc------CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 015013 114 DIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 184 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~------~~~i~VvflDTG~~f--pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~ 184 (414)
+|+|++|||+||+++ +++.+. +.++.++|+|+|... ++..++++++++++|++++++..... + ......
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~ 78 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEE-Y-TDDIEV 78 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhh-c-chhhhh
Confidence 489999999999875 777664 337889999999764 78899999999999999887754321 1 000000
Q ss_pred CCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCce------ecCCCCccccCCCCCeEEEEe
Q 015013 185 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV------QVDPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 185 G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~------e~d~~~~~~~~~~~~~~ki~P 256 (414)
... ........|...+...+.+..+ +.+++++|...||-. ....+... ...+... .....++...++|
T Consensus 79 ~~~--~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP 154 (185)
T cd01993 79 KKR--GGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP 154 (185)
T ss_pred hcc--CCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence 000 0011112355555556665554 567999999999864 21110000 0000000 0001134567899
Q ss_pred CccccHHHHHHHHHhCCCCCChh
Q 015013 257 VANVKGNDIWNFLRTMDVPINSL 279 (414)
Q Consensus 257 L~dWt~~DVw~Yi~~~~lP~npL 279 (414)
|.+|++.||+.|.+.++||+-+.
T Consensus 155 L~~~~k~eI~~~~~~~~l~~~~d 177 (185)
T cd01993 155 LVYVREKEIVLYAELNGLPFVEE 177 (185)
T ss_pred cccCCHHHHHHHHHHcCCCcccC
Confidence 99999999999999999998654
No 24
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=99.29 E-value=3.3e-11 Score=116.87 Aligned_cols=163 Identities=20% Similarity=0.325 Sum_probs=103.1
Q ss_pred HHHHHHHHHHc-----CCcEEEEechHHHHHHH-HHHHhc------CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcE
Q 015013 101 LEIMDRALEKF-----GNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRI 167 (414)
Q Consensus 101 ~eil~~a~~~~-----~~~i~vafSGGKDSvlL-~L~~~~------~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i 167 (414)
...+..++.+| +++|+|++|||+||++| |++.+. +.++.++++|.|.. +.+ ++++++++++|+++
T Consensus 13 ~~~v~~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~ 90 (258)
T PRK10696 13 RRQVGQAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPY 90 (258)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCE
Confidence 34556666665 46899999999999875 777653 23578889999953 443 46889999999998
Q ss_pred EEEcCChHHHHHHHHhcCCCCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCc------eec
Q 015013 168 EYMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPV------VQV 237 (414)
Q Consensus 168 ~~~~P~~~~~~~~~~~~G~~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~------~e~ 237 (414)
+++..+.... ... .. . .....| |...+..-|.++.. +.+.+++|...|+.. ...-+.. ...
T Consensus 91 ~v~~~~~~~~---~~~-~~---~-~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m 161 (258)
T PRK10696 91 HIEEQDTYSI---VKE-KI---P-EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAM 161 (258)
T ss_pred EEEEecchhh---hhh-hh---c-cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCccccc
Confidence 8765332111 000 00 0 011234 55555566666555 667899999998854 2100000 000
Q ss_pred CCCCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCC
Q 015013 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 238 d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~n 277 (414)
.+.. ....+++..++||++++++||+.|.+.+++|+-
T Consensus 162 ~~~~---~~~~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~ 198 (258)
T PRK10696 162 PPKL---LSDDGKHIVIRPLAYVAEKDIIKFAEAKEFPII 198 (258)
T ss_pred CCee---ecCCCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence 1100 001134667999999999999999999999974
No 25
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=99.18 E-value=1.8e-10 Score=107.29 Aligned_cols=142 Identities=19% Similarity=0.266 Sum_probs=96.8
Q ss_pred EEEEechHHHHHHH-HHHHhcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 015013 115 IAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (414)
Q Consensus 115 i~vafSGGKDSvlL-~L~~~~~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~ 192 (414)
|+|++|||+||+++ +++.+... ++..+++|+|...++..++++++++++|++++++...... ........ .
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~-~~~~~~~~------~ 73 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELD-DPEFAKNP------P 73 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCccc-cHHHhcCC------C
Confidence 57899999999875 88877543 8899999999878889999999999999998877543211 11111111 0
Q ss_pred cchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCc--cccHHHHHHH
Q 015013 193 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNF 268 (414)
Q Consensus 193 ~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~--dWt~~DVw~Y 268 (414)
..-..|......-+.+..+ +.+++++|...+|....|..+... . ...-++||+ .++++||.+|
T Consensus 74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~--~-----------~~~iirPL~~~~~~K~ei~~~ 140 (202)
T cd01990 74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL--R-----------ELGVRSPLAEAGLGKAEIREL 140 (202)
T ss_pred CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH--H-----------HcCCcCchhhcCCCHHHHHHH
Confidence 1112244444445555444 567899999888864222221110 0 122489999 5999999999
Q ss_pred HHhCCCCC
Q 015013 269 LRTMDVPI 276 (414)
Q Consensus 269 i~~~~lP~ 276 (414)
.+++|+|+
T Consensus 141 a~~~gl~~ 148 (202)
T cd01990 141 ARELGLPT 148 (202)
T ss_pred HHHcCCCC
Confidence 99999988
No 26
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=99.15 E-value=2.6e-10 Score=104.67 Aligned_cols=152 Identities=19% Similarity=0.283 Sum_probs=88.6
Q ss_pred cEEEEechHHHHHHH-HHHHhc----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~----~~~i~VvflDTG~~f--pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+|+||+|||+||++| +++.+. +.++.++++|.|... .+-.+++.++++.+|+++.+...+. ...
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~-------~~~-- 71 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE-------DRK-- 71 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C-------HCC--
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee-------eec--
Confidence 589999999999875 777664 447999999999763 2445899999999999998775332 100
Q ss_pred CCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCC--CCcccc--CCCCCeEEEEeCccc
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGLE--GGVGSLVKWNPVANV 260 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~--~~~~~~--~~~~~~~ki~PL~dW 260 (414)
.......||+.....-|.+... +.+.+++|.-.|+-. .-.-+..+.... .+.+.. ....++..++||++.
T Consensus 72 ---~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~-ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~ 147 (182)
T PF01171_consen 72 ---KGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA-ETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV 147 (182)
T ss_dssp ---TTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH-HHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred ---ccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH-HHHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence 1123345666555566766665 457899998877643 111111110000 000000 001246779999999
Q ss_pred cHHHHHHHHHhCCCCCCh
Q 015013 261 KGNDIWNFLRTMDVPINS 278 (414)
Q Consensus 261 t~~DVw~Yi~~~~lP~np 278 (414)
+++||-.|++.+++||-.
T Consensus 148 ~k~ei~~~~~~~~i~~~~ 165 (182)
T PF01171_consen 148 SKDEIRAYAKENGIPYVE 165 (182)
T ss_dssp -HHHHHHHHHHTT-SSBS
T ss_pred CHHHHHHHHHHCCCcEEE
Confidence 999999999999999854
No 27
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=99.14 E-value=7.8e-10 Score=106.93 Aligned_cols=151 Identities=18% Similarity=0.276 Sum_probs=101.7
Q ss_pred HHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 015013 102 EIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 180 (414)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~ 180 (414)
+.|+..++.++ +++|+||||.||+++ +++.+.+.++..+++|.+...++-.+.++++++++|++++++.-+. ....
T Consensus 3 ~~l~~~l~~~~-~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~--~~~~ 79 (252)
T TIGR00268 3 ENLRNFLKEFK-KVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDK--MINP 79 (252)
T ss_pred HHHHHHHHhcC-CEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHH--HHHH
Confidence 45666777765 599999999999875 8888888889999999987777888999999999999988764321 1111
Q ss_pred HHhcCCCCCCcccchhhhcchhchhH---HHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEE
Q 015013 181 VRSKGLFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 255 (414)
Q Consensus 181 ~~~~G~~~~~~~~~~~Cc~~~Kv~Pl---~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~ 255 (414)
... . .... |..+|..-+ .+..+ +++++++|...||-...|..+..... . +. .+
T Consensus 80 ~~~-n-------~~~~-c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~----------~-~~--~~ 137 (252)
T TIGR00268 80 FRA-N-------VEER-CYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKE----------F-NG--VS 137 (252)
T ss_pred HHh-C-------CCcc-cchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHH----------c-CC--CC
Confidence 111 1 1122 444443322 22222 56789999988885433332221110 0 11 39
Q ss_pred eCcc--ccHHHHHHHHHhCCCCCC
Q 015013 256 PVAN--VKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 256 PL~d--Wt~~DVw~Yi~~~~lP~n 277 (414)
||.+ ++++||..|.+..|||+-
T Consensus 138 PL~~~~l~K~eIr~la~~~gl~~~ 161 (252)
T TIGR00268 138 PWAEFGITKKEIREIAKSLGISFP 161 (252)
T ss_pred cchhcCCCHHHHHHHHHHcCCCcc
Confidence 9976 799999999999999853
No 28
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=99.11 E-value=3.7e-10 Score=110.99 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=100.9
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcC--CCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~--~~i~VvflDTG~~f--pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+.+|+||+||||||++| |++.+.. .++.++++|.|..- ..-.++++++++.+|+++.+..-.... .....
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 95 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDL-----GRETL 95 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeec-----ccccc
Confidence 46899999999999875 8888876 48899999999764 566789999999999876654211110 00000
Q ss_pred CCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCC-----CccccCCCCCeEEEEeC
Q 015013 187 FSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV-----FEGLEGGVGSLVKWNPV 257 (414)
Q Consensus 187 ~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~-----~~~~~~~~~~~~ki~PL 257 (414)
. ....| |...+..-+.+... |++.++||..+|+-. .-.-+.....+.. ........++...++||
T Consensus 96 ---~--~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~~~~~~~~~iRPL 169 (298)
T COG0037 96 ---D--GKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKRPFEGGLLIIRPL 169 (298)
T ss_pred ---C--CCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCcccccCCCCeeeeec
Confidence 0 11234 66666666777665 458999999988865 2111111111100 00011111222689999
Q ss_pred ccccHHHHHHHHHhCCCCC
Q 015013 258 ANVKGNDIWNFLRTMDVPI 276 (414)
Q Consensus 258 ~dWt~~DVw~Yi~~~~lP~ 276 (414)
+.++..||..|...+++||
T Consensus 170 ~~~~~~ei~~~~~~~~l~~ 188 (298)
T COG0037 170 LYVREKEIELYAKEKGLPY 188 (298)
T ss_pred ccCCHHHHHHHHHHcCCCE
Confidence 9999999999999999975
No 29
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.10 E-value=1e-10 Score=99.65 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=47.3
Q ss_pred CCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++|+++++++|+..+...+.++++||+||||||++|+.|.|.|+++++.+..
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~ 60 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD 60 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999755457899999999999999999999999999988754
No 30
>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=99.09 E-value=7.6e-11 Score=113.30 Aligned_cols=150 Identities=19% Similarity=0.331 Sum_probs=108.9
Q ss_pred cEEEEechHHHHHHH-HHHHhc-----------C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE-cCChHHHHH
Q 015013 114 DIAIAFSGAEDVALI-EYAHLT-----------G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM-FPDAVEVQA 179 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~-----------~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~-~P~~~~~~~ 179 (414)
.++.||.||||.+++ +++.+. . ..++.+|+|-+..||+..+|+..-..+|.+.+..+ .+. ...
T Consensus 84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~--~lk- 160 (282)
T KOG2644|consen 84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAG--RLK- 160 (282)
T ss_pred HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcc--hHH-
Confidence 467788899999764 655541 1 24789999999999999999999999998766522 111 000
Q ss_pred HHHhcCCCCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCcc
Q 015013 180 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 259 (414)
Q Consensus 180 ~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~d 259 (414)
++ -+...|+.| ...+++.|+|..+-. - ..+..++ .++..|+++.|..||++
T Consensus 161 ----~~-----------~~~~~~~~~------~~k~i~vg~r~~dp~-g-~~~~~~~------~td~~wp~~~r~~pll~ 211 (282)
T KOG2644|consen 161 ----KA-----------LSLFKKVDP------ESKAILVGIRNTDPV-G-EALAPFE------RTDSLWPQFMRLLPLLE 211 (282)
T ss_pred ----HH-----------HHHhhhhhh------hhhhHhhhhhhCCCc-c-ceeccee------eccCCchhhhhhccccc
Confidence 01 122223333 345667899988864 2 2222222 23456788999999999
Q ss_pred ccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCC
Q 015013 260 VKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP 295 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~ 295 (414)
|+..|||.|++..++|||.||++||+|+|-.--|.+
T Consensus 212 ws~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~p 247 (282)
T KOG2644|consen 212 WSYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSP 247 (282)
T ss_pred chHHHHHHHHhcCCCceeeeecccccccccccCCCC
Confidence 999999999999999999999999999999888876
No 31
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=104.05 Aligned_cols=154 Identities=20% Similarity=0.294 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
+-++.|+.+++..+ +++||||||.||++| .++.+ .|.++..+++|+.+..+.-.+-+...++.+|++..++.-...
T Consensus 5 ~Kl~~l~~~ik~~~-kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~- 82 (269)
T COG1606 5 SKLERLKKAIKEKK-KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRM- 82 (269)
T ss_pred HHHHHHHHHHhhcC-eEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhc-
Confidence 34567777777765 799999999999987 66655 578999999999999998899999999999999877632111
Q ss_pred HHHHHHhcCCCCCCcccchhhhcchhchhH---H-HHhc-cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCe
Q 015013 177 VQALVRSKGLFSFYEDGHQECCRVRKVRPL---R-RALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (414)
Q Consensus 177 ~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl---~-ral~-~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~ 251 (414)
+ +.|-.+..+ -|+.+|..-+ . .+.+ |+++++.|...+|..+.|-.+....-.
T Consensus 83 --------~-~~~~~n~~~-rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~------------- 139 (269)
T COG1606 83 --------D-PEFKENPEN-RCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKEL------------- 139 (269)
T ss_pred --------c-hhhccCCCC-cchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhc-------------
Confidence 1 112111222 2555554433 2 2332 799999999999997656555443211
Q ss_pred EEEEeCcc--ccHHHHHHHHHhCCCCCC
Q 015013 252 VKWNPVAN--VKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 252 ~ki~PL~d--Wt~~DVw~Yi~~~~lP~n 277 (414)
--..|+++ .+.+||-.|.+..|+++.
T Consensus 140 gi~sPl~e~gitk~eIre~a~~lgl~~~ 167 (269)
T COG1606 140 GIRSPLAEFGITKKEIREIAKSLGLPTW 167 (269)
T ss_pred CCCChHHHhCCcHHHHHHHHHHcCCCcc
Confidence 02478876 599999999999999987
No 32
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.05 E-value=2.4e-09 Score=113.37 Aligned_cols=168 Identities=13% Similarity=0.186 Sum_probs=105.9
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 189 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~ 189 (414)
++++|++|||+||+++ +++.+. +.++..+|+|+|.. -+|..++.+.+++++|++++++.-+.... ....|. .-
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~---~~l~g~-~~ 291 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFL---SALAGV-TD 291 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHH---HhccCC-CC
Confidence 6799999999999875 777765 77899999999974 45777777788899999998774321111 111233 11
Q ss_pred CcccchhhhcchhchhHHHHh---ccCcEEEecccccCCccCcCCCCceecCCC--CccccCCCCCeEEEEeCccccHHH
Q 015013 190 YEDGHQECCRVRKVRPLRRAL---KGLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGLEGGVGSLVKWNPVANVKGND 264 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~ral---~~~~~~itGiRrdES~~~Ra~~~~~e~d~~--~~~~~~~~~~~~ki~PL~dWt~~D 264 (414)
++..+..||..+ ..-+.+.. .+.+.+++|...++-..+|...+.-..... ..+... ....-.+.||.+++++|
T Consensus 292 ~~~~r~~~~~~~-~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik~~~~l~Gl~~-~~~~~ii~PL~~l~K~E 369 (511)
T PRK00074 292 PEEKRKIIGREF-IEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIKSHHNVGGLPE-DMKLKLVEPLRELFKDE 369 (511)
T ss_pred cHHhhhhhhHHH-HHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccccccCccCcCh-hHhcccccchhhcCHHH
Confidence 222222344333 23444444 256789999977775423411000000000 001100 01134689999999999
Q ss_pred HHHHHHhCCCCCChhhhCCCCC
Q 015013 265 IWNFLRTMDVPINSLHSQGYIS 286 (414)
Q Consensus 265 Vw~Yi~~~~lP~npLYd~Gy~S 286 (414)
|-.|.+.+|||++-.+++-|+.
T Consensus 370 Ir~~a~~~gLp~~~~~~~p~p~ 391 (511)
T PRK00074 370 VRKLGLELGLPEEIVYRHPFPG 391 (511)
T ss_pred HHHHHHHcCCCHHHhCCCCCCC
Confidence 9999999999999998886655
No 33
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=98.99 E-value=6.9e-09 Score=93.87 Aligned_cols=141 Identities=16% Similarity=0.234 Sum_probs=90.7
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~ 192 (414)
+++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+| +...+ |
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~-~-------------------- 58 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYV-P-------------------- 58 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEE-e--------------------
Confidence 478999999999875 888888888999999998764444589999999999 22221 1
Q ss_pred cchhhhcchhchhHHHHh--ccCcEEEecccccCCccCcCC-CC-cee-cCCCCccccCCCCCeEEEEeCccccHHHHHH
Q 015013 193 GHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSPGTRSE-IP-VVQ-VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 267 (414)
Q Consensus 193 ~~~~Cc~~~Kv~Pl~ral--~~~~~~itGiRrdES~~~Ra~-~~-~~e-~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~ 267 (414)
|.......-+.++. .+.+.+++|...+|.. .... .+ .++ .+.... .....++.-++||++|++.||..
T Consensus 59 ----~~~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~PL~~~~K~ei~~ 131 (169)
T cd01995 59 ----ARNLIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKALN--LGTENGIKIHAPLIDLSKAEIVR 131 (169)
T ss_pred ----CcCHHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHHH--hhcCCCeEEEeCcccCCHHHHHH
Confidence 00001111222222 2667899999998852 2111 00 000 000000 00112355589999999999999
Q ss_pred HHHhCCCCCChhhhCC
Q 015013 268 FLRTMDVPINSLHSQG 283 (414)
Q Consensus 268 Yi~~~~lP~npLYd~G 283 (414)
|++++|+|+..-|.+.
T Consensus 132 ~~~~~g~~~~~s~sC~ 147 (169)
T cd01995 132 LGGELGVPLELTWSCY 147 (169)
T ss_pred HHhHcCCChhheeecc
Confidence 9999999998887653
No 34
>PRK00919 GMP synthase subunit B; Validated
Probab=98.99 E-value=1.1e-08 Score=101.60 Aligned_cols=162 Identities=16% Similarity=0.179 Sum_probs=101.9
Q ss_pred CcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY 190 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~ 190 (414)
++++|+||||.||+++ +++++ .+.++..+|+|+|.....-.+++.++++++ ++++++.-... +.. .-.|.
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~-fl~--~L~~v---- 93 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDR-FLD--ALKGV---- 93 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHH-HHH--hccCC----
Confidence 6799999999999875 77777 477899999999988776788888888877 77776633221 111 11232
Q ss_pred cccchhh--hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHH
Q 015013 191 EDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 266 (414)
Q Consensus 191 ~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw 266 (414)
.+....| |......-+.+..+ +++.+++|...++....|.++... ....+... ...+..+.||.+++++||.
T Consensus 94 ~npe~rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~---~nv~gl~~-~~~~~Ii~PL~~l~K~EVr 169 (307)
T PRK00919 94 TDPEEKRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSH---HNVGGLPE-GMVLKIVEPLRDLYKDEVR 169 (307)
T ss_pred CChHHhhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCccccc---ccccccCh-hhcCCcccCchhCcHHHHH
Confidence 1111222 22222333333332 567899999887764334332110 00101000 0123358999999999999
Q ss_pred HHHHhCCCCCChhhhCCCCC
Q 015013 267 NFLRTMDVPINSLHSQGYIS 286 (414)
Q Consensus 267 ~Yi~~~~lP~npLYd~Gy~S 286 (414)
.|.+..|||+.-++..-|+.
T Consensus 170 ~la~~lGLp~~~~~r~p~~~ 189 (307)
T PRK00919 170 EVARALGLPEEISERMPFPG 189 (307)
T ss_pred HHHHHcCCChhhhCCCCCCC
Confidence 99999999987666555544
No 35
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=98.99 E-value=4.1e-09 Score=96.24 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=86.3
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHH-----HHHHHHHHHHHhCCcE--EEEcCChHHHHHHHHhcC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPE-----TYRFFDEVEKHFGIRI--EYMFPDAVEVQALVRSKG 185 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpE-----T~~~v~~l~~~~gl~i--~~~~P~~~~~~~~~~~~G 185 (414)
+++|++|||+||+++ +++.+.+.++..+|+|+|....+ ..+..+.+ ..|++++ .++..... ........+
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~~~~~ 78 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKL-ARYSPGHKLVVIIFTFF-VQKEIYGYG 78 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHH-HHhCCCCceEEEeCcHH-HHHHHHHhC
Confidence 478999999999875 88888888899999999975443 33333333 5566543 45544321 111111122
Q ss_pred CCCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCcc-CcCCCCceecCCCCccccCCCCCeEEEEeCccc
Q 015013 186 LFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 260 (414)
Q Consensus 186 ~~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~-~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dW 260 (414)
. ....| |......-+..+.+ +.+.+++|...+|-.. .+.++. ... ...++..++||+++
T Consensus 79 ~------~~~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~~~~~~~l~--~~~--------~~~~~~i~rPl~~~ 142 (177)
T cd01712 79 K------EKYRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVASQTLENLL--VIS--------SGTDLPILRPLIGF 142 (177)
T ss_pred C------CccHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccchHHHHHhhh--hcc--------cCCCCeEECCCCCC
Confidence 1 11223 32222222222222 6689999998877531 111111 111 11246678999999
Q ss_pred cHHHHHHHHHhCCCCC
Q 015013 261 KGNDIWNFLRTMDVPI 276 (414)
Q Consensus 261 t~~DVw~Yi~~~~lP~ 276 (414)
++.||+.|.+.++++.
T Consensus 143 ~K~eI~~~a~~~gl~~ 158 (177)
T cd01712 143 DKEEIIGIARRIGTYD 158 (177)
T ss_pred CHHHHHHHHHHcCCcc
Confidence 9999999999999864
No 36
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=98.98 E-value=5e-09 Score=103.49 Aligned_cols=167 Identities=13% Similarity=0.134 Sum_probs=103.7
Q ss_pred cEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFY 190 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~~~~~~~G~~~~~ 190 (414)
+++|++|||.||+++ +++.+ .+.++..+|+|+|....+-.+.+.++++++|+ +++++.-+.... ....|... +
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl---~~l~~v~n-p 76 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFL---SALKGVTD-P 76 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHHH---HHhcCCCC-H
Confidence 478999999999875 88877 47789999999998766667788999988886 888774332111 11223211 1
Q ss_pred cccchhhhcchhchhHHHHhc--c-CcEEEecccccCCccCcCC-C--CceecCCCCccccCCCCCeEEEEeCccccHHH
Q 015013 191 EDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSE-I--PVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 264 (414)
Q Consensus 191 ~~~~~~Cc~~~Kv~Pl~ral~--~-~~~~itGiRrdES~~~Ra~-~--~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~D 264 (414)
..++..|......-+.+..+ + ++.+++|.-.++-..+|.. . ..+.......+... ....-.+.||.+++++|
T Consensus 77 -e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~a-~~~~~vi~PL~~l~K~E 154 (295)
T cd01997 77 -EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLPE-DMKLKLIEPLRDLFKDE 154 (295)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccch-HhhCCcccccccCcHHH
Confidence 11122233333444444443 4 6789999988764222221 0 00100000001000 01233489999999999
Q ss_pred HHHHHHhCCCCCChhhhCCCCC
Q 015013 265 IWNFLRTMDVPINSLHSQGYIS 286 (414)
Q Consensus 265 Vw~Yi~~~~lP~npLYd~Gy~S 286 (414)
|..|.+..|||..-++++-|+.
T Consensus 155 VR~lar~lGLp~~~~~~~Pfp~ 176 (295)
T cd01997 155 VRELGRELGLPEEIVERHPFPG 176 (295)
T ss_pred HHHHHHHcCCCchhhCCCCCCC
Confidence 9999999999998888886665
No 37
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=98.95 E-value=1.8e-08 Score=100.27 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=100.1
Q ss_pred CcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 189 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~fp-ET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~ 189 (414)
++++|++|||.||+++ +++.+ .+.++..+|+|+|.... |..+..+.+++++|++++++.-..... . ...|...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~fl-~--~l~~v~~- 92 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERFL-S--ALKGVTD- 92 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHHH-h--hhcCCCC-
Confidence 6799999999999876 77776 47789999999997654 444445556678999988774332111 1 1122211
Q ss_pred CcccchhhhcchhchhHHHHhc--c-CcEEEecccccCCccCcCCC-CceecCCCCccccCCCCCeEEEEeCccccHHHH
Q 015013 190 YEDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI 265 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~ral~--~-~~~~itGiRrdES~~~Ra~~-~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DV 265 (414)
+...+.. |......-+.+..+ + .+.+++|...++-..+|.+. ..+..-....+.. .....-.+.||.+.+++||
T Consensus 93 p~~~r~~-~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii~PL~~l~K~EV 170 (311)
T TIGR00884 93 PEEKRKI-IGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLVEPLRELFKDEV 170 (311)
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceEEEcccCcHHHH
Confidence 1111112 22222333444332 4 66889999887643233210 0010000000000 0012336899999999999
Q ss_pred HHHHHhCCCCCChhhhCCCCC
Q 015013 266 WNFLRTMDVPINSLHSQGYIS 286 (414)
Q Consensus 266 w~Yi~~~~lP~npLYd~Gy~S 286 (414)
..|.+..|||++-.+++=|+.
T Consensus 171 r~la~~lgLp~~~~~~~Pf~~ 191 (311)
T TIGR00884 171 RKLGKELGLPEEIVWRHPFPG 191 (311)
T ss_pred HHHHHHcCCCHHHhhCCCCCC
Confidence 999999999998888885543
No 38
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=98.92 E-value=1.9e-08 Score=101.59 Aligned_cols=157 Identities=12% Similarity=0.078 Sum_probs=101.7
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCC----------cHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL----------NPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 178 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~----------fpET~~~v~~l~~~~gl~i~~~~P~~~~~----~ 178 (414)
+|+|++|||+||+++ +++.+.+.++..+|+|++.. .++-.++++++++++|++++++.-..... .
T Consensus 2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~ 81 (346)
T PRK00143 2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID 81 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence 589999999999875 88888888899999998743 35667899999999999988774322211 1
Q ss_pred HHHHh--cCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceec-CC----CCc-cccCCC
Q 015013 179 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFE-GLEGGV 248 (414)
Q Consensus 179 ~~~~~--~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~-d~----~~~-~~~~~~ 248 (414)
.++.. .|.. + .....|-...|..-|.++.+ +.+.++||.-.++.. .+ ..+.. |. .|. ......
T Consensus 82 ~~~~~~~~g~t--p-npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~---~L~rg~d~~kDqsy~l~~l~~~ 154 (346)
T PRK00143 82 YFLDEYKAGRT--P-NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR---ELLRGVDPNKDQSYFLYQLTQE 154 (346)
T ss_pred HHHHHHHcCCC--C-CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc---eEEEccCCCcChhhhhccCCHH
Confidence 12222 2321 1 11223444567777777665 567899999887753 21 11111 11 010 000000
Q ss_pred CCeEEEEeCccccHHHHHHHHHhCCCCCC
Q 015013 249 GSLVKWNPVANVKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 249 ~~~~ki~PL~dWt~~DVw~Yi~~~~lP~n 277 (414)
.....+.||.+++++||..|.++++||+.
T Consensus 155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~~ 183 (346)
T PRK00143 155 QLAKLLFPLGELTKPEVREIAEEAGLPVA 183 (346)
T ss_pred HhcceeccCccCCHHHHHHHHHHcCCCcC
Confidence 01236899999999999999999999863
No 39
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.91 E-value=1.3e-09 Score=89.89 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=42.9
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
+|+.++.++|++.+. .++++||.||||||++|++|.|.|+++++.+..
T Consensus 2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~ 49 (101)
T cd03003 2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG 49 (101)
T ss_pred CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC
Confidence 578999999999775 569999999999999999999999998887753
No 40
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.90 E-value=1.9e-09 Score=90.65 Aligned_cols=50 Identities=42% Similarity=0.771 Sum_probs=45.3
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.|++++.++|+.++...+.+++|||.||||||++|++|.|.|+++++.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~ 51 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLA 51 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 58899999999998766678999999999999999999999999887775
No 41
>PRK14561 hypothetical protein; Provisional
Probab=98.88 E-value=3.5e-08 Score=91.82 Aligned_cols=141 Identities=13% Similarity=0.160 Sum_probs=91.9
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH---HHhcCCCCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL---VRSKGLFSF 189 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~---~~~~G~~~~ 189 (414)
+++|++|||+||+++ +++.+. .++.++++|.|.. + -.++++++++.+|++.+++..+....... ....+.|
T Consensus 2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~-~-e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P-- 76 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL-D-SWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP-- 76 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch-h-HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence 589999999999876 777666 5678889999863 3 37899999999999988775543322221 2222221
Q ss_pred CcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHHHHH
Q 015013 190 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 269 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi 269 (414)
...|. .....-+..+..+++.+++|.+.|+.. .-..++.+..-. ...++.-++||+.++++||..|.
T Consensus 77 ----~~~~~-~l~~~~l~~~a~g~~~Ia~G~n~DD~~-et~~r~~~~a~~-------~~~gi~iirPL~~~~K~eI~~la 143 (194)
T PRK14561 77 ----NNAIQ-YVHEHALEALAEEYDVIADGTRRDDRV-PKLSRSEIQSLE-------DRKGVQYIRPLLGFGRKTIDRLV 143 (194)
T ss_pred ----CchhH-HHHHHHHHHHHcCCCEEEEEecCCCcc-hhccHHHHhhhh-------cCCCcEEEeeCCCCCHHHHHHHH
Confidence 12233 222334444447888999999999963 211222221100 11245568999999999999999
Q ss_pred HhC
Q 015013 270 RTM 272 (414)
Q Consensus 270 ~~~ 272 (414)
+..
T Consensus 144 ~~l 146 (194)
T PRK14561 144 ERL 146 (194)
T ss_pred Hhh
Confidence 876
No 42
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.4e-09 Score=111.12 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCCCCCCCCcchhhhccCCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 333 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 333 ~~~~~~~~~~~~~~dl~~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
++....-.+..-+++ .+.++|..+..+||+.++. +.++-|||.||||||+||++++|+|+++++++.-
T Consensus 348 Gk~~p~~kSqpiPe~-~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~ 415 (493)
T KOG0190|consen 348 GKVKPHLKSQPIPED-NDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD 415 (493)
T ss_pred CccccccccCCCCcc-cccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcC
Confidence 334444444444444 5556799999999999998 8999999999999999999999999998888854
No 43
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.86 E-value=4e-08 Score=99.66 Aligned_cols=174 Identities=12% Similarity=0.035 Sum_probs=104.5
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHHhc
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVRSK 184 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~--fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~----~~~~~ 184 (414)
+++|+|++|||.||+++ +|+.+.+.++..+|+|.+.. -++..+.++++++++|++++++.-....... ++..+
T Consensus 5 ~~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y 84 (360)
T PRK14665 5 NKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEY 84 (360)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHH
Confidence 35799999999999875 88888888999999997632 3456788999999999999877432211111 11111
Q ss_pred --CCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCce-e-cCC----CCccccCCCCC-eEE
Q 015013 185 --GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV-Q-VDP----VFEGLEGGVGS-LVK 253 (414)
Q Consensus 185 --G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~-e-~d~----~~~~~~~~~~~-~~k 253 (414)
|. .......|-...|..-|.++.+ +.+.++||.-+.-.. ......+ . .|. .|.-..-.... ..-
T Consensus 85 ~~g~---tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~--~~~~~~l~~g~D~~kDQSyfL~~l~~~~l~~~ 159 (360)
T PRK14665 85 MSGH---TPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW--IDGNYYITPAEDVDKDQSFFLWGLRQEILQRM 159 (360)
T ss_pred hccC---CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec--cCCcEEEEeecCCCCCceEEecCCCHHHHhhe
Confidence 21 0011234555677777766664 567899996643210 0011111 0 111 01000000000 113
Q ss_pred EEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCC
Q 015013 254 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 293 (414)
Q Consensus 254 i~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT 293 (414)
+.||.+++++||.++.++.+++.. .++ =.|-|++.|+
T Consensus 160 ifPLg~~~K~eVr~~A~~~gl~~~--a~k-~eSq~iCF~~ 196 (360)
T PRK14665 160 LLPMGGMTKSEARAYAAERGFEKV--AKK-RDSLGVCFCP 196 (360)
T ss_pred eccCcCCCHHHHHHHHHHCCCCcc--CcC-CCCCccccCC
Confidence 799999999999999999998422 222 2577777775
No 44
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.84 E-value=3.8e-09 Score=87.46 Aligned_cols=48 Identities=33% Similarity=0.719 Sum_probs=42.5
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++.++.++|++++. +.+++|||.|||+||++|+.|.|.|+++++.+.
T Consensus 2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~ 49 (104)
T cd03004 2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALK 49 (104)
T ss_pred cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 577899999999876 567799999999999999999999999888763
No 45
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.6e-09 Score=94.22 Aligned_cols=51 Identities=16% Similarity=0.287 Sum_probs=43.8
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhc
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMG 406 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~ 406 (414)
+..++..+|+..+. +.+.||||+|||+||+||+.|.|.++++.+-++.++.
T Consensus 45 ~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k 95 (150)
T KOG0910|consen 45 FNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFK 95 (150)
T ss_pred ccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEE
Confidence 34577888988776 8999999999999999999999999999888765544
No 46
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=98.82 E-value=7.3e-08 Score=97.60 Aligned_cols=161 Identities=11% Similarity=0.099 Sum_probs=97.1
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCC----------CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR----------LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q 178 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~----------~fpET~~~v~~l~~~~gl~i~~~~P~~~~~----~ 178 (414)
+++|++|||+||+++ +|+.+.+.++..+|+++.. ..++-.+.++++++.+|++++++.-..... .
T Consensus 2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~ 81 (352)
T TIGR00420 2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE 81 (352)
T ss_pred eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence 589999999999875 8888888889999995421 234567889999999999998764322211 1
Q ss_pred HHHHh--cCCCCCCcccchhhhcchhchhHHHHhc---cCcEEEecccc---cCCccCcCCCCceec--CCCCc-cccCC
Q 015013 179 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRK---DQSPGTRSEIPVVQV--DPVFE-GLEGG 247 (414)
Q Consensus 179 ~~~~~--~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~---~~~~~itGiRr---dES~~~Ra~~~~~e~--d~~~~-~~~~~ 247 (414)
.++.. .|.. + +..-.|-...|..-|.++.. +.+.++||.-. ++.. .+..+..... |-.|. .....
T Consensus 82 ~~~~~y~~g~t--p-npC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~~-~~~l~~~~d~~kDqsy~L~~l~~ 157 (352)
T TIGR00420 82 PFIQEYKEGRT--P-NPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIEG-KSLLLRALDKNKDQSYFLYHLSH 157 (352)
T ss_pred HHHHHHHcCCC--C-CcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCCC-cEEEEEccCCCcCcceecccCCH
Confidence 12222 1210 1 11223445567677765543 66889999965 3321 1211111111 10110 00000
Q ss_pred CCCeEEEEeCccccHHHHHHHHHhCCCCCCh
Q 015013 248 VGSLVKWNPVANVKGNDIWNFLRTMDVPINS 278 (414)
Q Consensus 248 ~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~np 278 (414)
..-...+.||.+|+++||..|.+.+|||+..
T Consensus 158 ~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~ 188 (352)
T TIGR00420 158 EQLAKLLFPLGELLKPEVRQIAKNAGLPTAE 188 (352)
T ss_pred HHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence 0012258999999999999999999998643
No 47
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=98.81 E-value=1.6e-08 Score=105.26 Aligned_cols=152 Identities=13% Similarity=0.169 Sum_probs=94.0
Q ss_pred CCcEEEEechHHHHHHH-HHHHhc-----CCCeEEEEEeCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLT-----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~-----~~~i~VvflDTG~~f--pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~ 183 (414)
+++|+|++|||+||++| |++.+. +.++.++|+|.|..- .+-.+|++++++.+|+++++..-+.. .
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~ 87 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q 87 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence 46799999999999875 777642 457899999999752 23458999999999999876532110 0
Q ss_pred cCCCCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCC--CCcccc--CCCCCeEEEEeCcc
Q 015013 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGLE--GGVGSLVKWNPVAN 259 (414)
Q Consensus 184 ~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~--~~~~~~--~~~~~~~ki~PL~d 259 (414)
.+. ....|++...-.-+....+..+++++|+..|+.. .=.-+....-.. ...+.. ...++...++||++
T Consensus 88 ~~~------~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~-ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~ 160 (436)
T PRK10660 88 RGL------GIEAAARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA 160 (436)
T ss_pred CCC------CHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHH-HHHHHHHHcCCChhhccccceecccCCCcEeCCCcc
Confidence 111 1223333333344444444556889998887753 111111111000 000000 00123456899999
Q ss_pred ccHHHHHHHHHhCCCCCC
Q 015013 260 VKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP~n 277 (414)
.+++||..|.+.++|||-
T Consensus 161 ~~k~ei~~ya~~~~l~~~ 178 (436)
T PRK10660 161 RSREELEQYAQAHGLRWI 178 (436)
T ss_pred CCHHHHHHHHHHcCCCEE
Confidence 999999999999999963
No 48
>PRK08349 hypothetical protein; Validated
Probab=98.80 E-value=2.7e-08 Score=92.71 Aligned_cols=147 Identities=13% Similarity=0.148 Sum_probs=83.4
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcE---EEEcCCh--HHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRI---EYMFPDA--VEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i---~~~~P~~--~~~~~~~~~~G~ 186 (414)
++++++|||+||+++ +++.+.+.++..+|+|+|.. .....+.++++.+.+|+++ .++.... ......+...+.
T Consensus 2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 81 (198)
T PRK08349 2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELKK 81 (198)
T ss_pred cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhCC
Confidence 478899999999875 88878888999999998521 1112234444444446654 3332110 011111111111
Q ss_pred CCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccH
Q 015013 187 FSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG 262 (414)
Q Consensus 187 ~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~ 262 (414)
.+..| |+.....-+.++.. +.+.+++|...+|.. .-........+. ..++..++||+++++
T Consensus 82 ------~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~~~K 146 (198)
T PRK08349 82 ------EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIGLDK 146 (198)
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCCCCH
Confidence 11223 44444444444433 568999998877752 111111111110 123557899999999
Q ss_pred HHHHHHHHhCCCC
Q 015013 263 NDIWNFLRTMDVP 275 (414)
Q Consensus 263 ~DVw~Yi~~~~lP 275 (414)
+||..|.+.+|++
T Consensus 147 ~eI~~~a~~~g~~ 159 (198)
T PRK08349 147 EEIVKIAKEIGTF 159 (198)
T ss_pred HHHHHHHHHcCCh
Confidence 9999999999954
No 49
>PHA02278 thioredoxin-like protein
Probab=98.79 E-value=3.6e-09 Score=88.64 Aligned_cols=40 Identities=8% Similarity=0.235 Sum_probs=33.6
Q ss_pred cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++|++.+ +.++++||+||||||++|+.|.|.|+++++.+.
T Consensus 5 ~~~~~~i---~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~ 44 (103)
T PHA02278 5 VDLNTAI---RQKKDVIVMITQDNCGKCEILKSVIPMFQESGD 44 (103)
T ss_pred HHHHHHH---hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc
Confidence 4555555 488999999999999999999999999877643
No 50
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.79 E-value=9.1e-09 Score=86.03 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=42.2
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+|+.++.++|++.+. .++++||.||||||++|+++.|.|+++++.+.
T Consensus 2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~ 48 (108)
T cd02996 2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIK 48 (108)
T ss_pred ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHh
Confidence 578999999999764 67899999999999999999999999888764
No 51
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=98.77 E-value=2.3e-07 Score=93.88 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=100.1
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HH
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----AL 180 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~--------fpET~~~v~~l~~~~gl~i~~~~P~~~~~~----~~ 180 (414)
+|+|++|||.||+++ +++.+.+.++..+|+|++.. -++-.++++++++++|++++++.-...... .+
T Consensus 1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~ 80 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF 80 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence 488999999999875 88888888899999998742 345678999999999999887754332211 12
Q ss_pred HHh--cCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCce-e-cC----CCCccc-cCCCC
Q 015013 181 VRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVV-Q-VD----PVFEGL-EGGVG 249 (414)
Q Consensus 181 ~~~--~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~-e-~d----~~~~~~-~~~~~ 249 (414)
+.. .|. -+ +....|....|..-|.++.. +++.++||.-++... .-...+.+ . .| -.|... .....
T Consensus 81 i~~~~~g~--tp-npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~-~~~~~~~l~rg~d~~kdqsy~L~~~~~~~ 156 (349)
T cd01998 81 LEEYKKGR--TP-NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE-DNNGRYRLLRGVDPNKDQSYFLSQLSQEQ 156 (349)
T ss_pred HHHHHcCC--CC-CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee-cCCCceEEeecCCCCCCcceEeccCCHHH
Confidence 222 222 01 11224555567777776554 667899998877542 11011111 1 11 110000 00000
Q ss_pred CeEEEEeCccccHHHHHHHHHhCCCCC
Q 015013 250 SLVKWNPVANVKGNDIWNFLRTMDVPI 276 (414)
Q Consensus 250 ~~~ki~PL~dWt~~DVw~Yi~~~~lP~ 276 (414)
....+.||.+++++||..|.++++||.
T Consensus 157 l~~ii~PL~~~~K~eVr~~A~~~gl~~ 183 (349)
T cd01998 157 LSRLIFPLGDLTKPEVREIAKELGLPV 183 (349)
T ss_pred HhheeecCCCCCHHHHHHHHHHcCCCC
Confidence 123589999999999999999999984
No 52
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.75 E-value=7.3e-09 Score=88.24 Aligned_cols=51 Identities=6% Similarity=0.126 Sum_probs=39.3
Q ss_pred cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhh-cCCCCc
Q 015013 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVM-GFKPEL 411 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~-~~~~~~ 411 (414)
++|++.+. .+.+++|||+|||+||++|+.|.|.|+++++.++..+ .++.|+
T Consensus 3 ~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDv 54 (114)
T cd02954 3 WAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDI 54 (114)
T ss_pred HHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEEC
Confidence 45656554 2367899999999999999999999999998887543 454443
No 53
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.73 E-value=1.1e-08 Score=85.13 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=42.0
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
|+.++.++|++.+. +.++++||.|||+||++|+.+.|.|+++++.+.
T Consensus 2 v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~ 48 (109)
T cd03002 2 VYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD 48 (109)
T ss_pred eEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhc
Confidence 67899999999876 568889999999999999999999999877764
No 54
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.72 E-value=2.1e-08 Score=85.33 Aligned_cols=49 Identities=18% Similarity=0.474 Sum_probs=43.3
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+.++.++.++|+..+. +.+++|||.|||+||++|+.|.|.|+++++.+.
T Consensus 1 ~~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~ 49 (114)
T cd02992 1 DPVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLR 49 (114)
T ss_pred CCeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHH
Confidence 3688999999999886 456899999999999999999999999888764
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.71 E-value=8.1e-09 Score=86.02 Aligned_cols=43 Identities=5% Similarity=-0.110 Sum_probs=36.1
Q ss_pred CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 358 ~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+.++|++++. ...+++|||+|||+||++|+.|.|.|+++++.+
T Consensus 2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~ 44 (103)
T cd02985 2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC 44 (103)
T ss_pred CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC
Confidence 3467777775 235899999999999999999999999988776
No 56
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.4e-09 Score=86.86 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=37.5
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCCCcc
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKPELA 412 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~~~~ 412 (414)
..+++++|+|||+|||||+.|+|.|+++++.+..+++++.|+.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvd 61 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVD 61 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecc
Confidence 3469999999999999999999999999999988777666653
No 57
>TIGR00364 exsB protein. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.
Probab=98.69 E-value=2.7e-07 Score=86.01 Aligned_cols=162 Identities=14% Similarity=0.154 Sum_probs=95.3
Q ss_pred EEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH----HHhcCCCC-
Q 015013 115 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL----VRSKGLFS- 188 (414)
Q Consensus 115 i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~----~~~~G~~~- 188 (414)
++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+|++++++.-.. +..+ ....+.+.
T Consensus 1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~--~~~~~~~~~~~~~~~~~ 78 (201)
T TIGR00364 1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSL--LKQLGGSALTDESEIPP 78 (201)
T ss_pred CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechh--hcccccccccCCCCCCC
Confidence 36899999999875 7887877789999999997656677899999999999987663221 1110 00000000
Q ss_pred CCccc---chhhhc----chhchhHHHHh--ccCcEEEecccccCCccC---cCC-CCceecCCCCccccCCCCCeEEEE
Q 015013 189 FYEDG---HQECCR----VRKVRPLRRAL--KGLRAWITGQRKDQSPGT---RSE-IPVVQVDPVFEGLEGGVGSLVKWN 255 (414)
Q Consensus 189 ~~~~~---~~~Cc~----~~Kv~Pl~ral--~~~~~~itGiRrdES~~~---Ra~-~~~~e~d~~~~~~~~~~~~~~ki~ 255 (414)
..... .+.+|. .....-+..+. .+++.+++|.-.+|-... |.. +..++.-... ....++.-++
T Consensus 79 ~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~----~~~~~~~i~~ 154 (201)
T TIGR00364 79 QKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNL----GMLTPVKIRA 154 (201)
T ss_pred cCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHh----hcCCCeEEEE
Confidence 00000 111111 11112222222 266789999998884211 111 0000000000 0012355689
Q ss_pred eCccccHHHHHHHHHhCC---CCCChhhhC
Q 015013 256 PVANVKGNDIWNFLRTMD---VPINSLHSQ 282 (414)
Q Consensus 256 PL~dWt~~DVw~Yi~~~~---lP~npLYd~ 282 (414)
||++|++.||-++.+++| +|+.+-+.+
T Consensus 155 Pl~~~~K~eI~~la~~~g~~~~~~~~t~sC 184 (201)
T TIGR00364 155 PLMDLTKAEIVQLADELGVLDLVIKLTYSC 184 (201)
T ss_pred CCcCCCHHHHHHHHHHcCCccccHhhCCcC
Confidence 999999999999999999 887666654
No 58
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.68 E-value=3.3e-08 Score=81.10 Aligned_cols=49 Identities=16% Similarity=0.401 Sum_probs=42.8
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.|.+++.++|+..+. +.++++||.||||||++|+.|.|.|+++++.+..
T Consensus 1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 49 (104)
T cd02995 1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG 49 (104)
T ss_pred CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC
Confidence 367899999999776 5668999999999999999999999998887754
No 59
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.68 E-value=1.5e-08 Score=84.10 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=34.9
Q ss_pred hHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHh
Q 015013 362 MENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALV 404 (414)
Q Consensus 362 ~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~ 404 (414)
+.+++. ..++++|||.||||||++|+.|.|.|+++++.+..+
T Consensus 9 ~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~ 50 (100)
T cd02999 9 ALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQI 50 (100)
T ss_pred HHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccC
Confidence 344444 468899999999999999999999999998887643
No 60
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=98.68 E-value=1.6e-07 Score=96.30 Aligned_cols=148 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCCc
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYE 191 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~~~~~~~G~~~~~~ 191 (414)
+++|+||||.||+++ +++.+.+.++..+++|+|.. .+-.+.++++++.+|+ +++++.-.. ++...+..+....
T Consensus 1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~----ef~~~~~~~~i~~ 75 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDARE----EFVKDYGFAAIQA 75 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHH----HHHHhhchhhhcC
Confidence 488999999999875 88877788899999999943 5677889999999997 677663322 2333322222211
Q ss_pred ccchhhh-cchhc---hhH-----HHHh--ccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeC--c
Q 015013 192 DGHQECC-RVRKV---RPL-----RRAL--KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV--A 258 (414)
Q Consensus 192 ~~~~~Cc-~~~Kv---~Pl-----~ral--~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL--~ 258 (414)
+.-.|| +.++. +|+ .++. .+.++++.|.........|...+..... .++-.+.|+ .
T Consensus 76 -n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew 144 (394)
T TIGR00032 76 -NAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL 144 (394)
T ss_pred -CccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence 222333 23332 121 2222 2568899997543221013222222112 235578999 4
Q ss_pred cccHHHHHHHHHhCCCCCC
Q 015013 259 NVKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 259 dWt~~DVw~Yi~~~~lP~n 277 (414)
.++.+|+-.|++.+|||+.
T Consensus 145 ~l~r~ei~~ya~~~Gip~~ 163 (394)
T TIGR00032 145 NFTREEEIEYAIQCGIPYP 163 (394)
T ss_pred CCCHHHHHHHHHHcCCCee
Confidence 4699999999999999983
No 61
>PRK09381 trxA thioredoxin; Provisional
Probab=98.68 E-value=2.4e-08 Score=83.48 Aligned_cols=51 Identities=18% Similarity=0.338 Sum_probs=44.2
Q ss_pred CCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
++.|+.++.++|++.+. +.++++||.||+|||++|+.+.|.|+++++.+..
T Consensus 2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~ 52 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG 52 (109)
T ss_pred CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC
Confidence 56789999999987654 5688999999999999999999999998887743
No 62
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=98.68 E-value=1.5e-07 Score=83.75 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=71.5
Q ss_pred cEEEEechHHHHHHH-HHHHhcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 191 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~ 191 (414)
.++|++|||+||+++ +++.+... ++.++++|.|...++..++++++++. |+++..+.++.......... .+..-..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~-~l~~~~~ 80 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLA-RFKAKVG 80 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHH-HHhcccC
Confidence 488999999999875 88877654 77789999999889999999999999 88876555544332221110 0000001
Q ss_pred ccchhhhcchhchhHHHHhc-cCcEEEecccccCCc
Q 015013 192 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSP 226 (414)
Q Consensus 192 ~~~~~Cc~~~Kv~Pl~ral~-~~~~~itGiRrdES~ 226 (414)
.....|...+.....+.+.+ +.+++++|...+|..
T Consensus 81 ~p~~~~~~~~~~~~~~~A~~~g~~~il~G~~~de~~ 116 (154)
T cd01996 81 DPCWPCDTAIFTSLYKVALKFGIPLIITGENPAQEF 116 (154)
T ss_pred CCChhhhHHHHHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence 11223444443333333333 567899999999986
No 63
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.67 E-value=3e-08 Score=81.65 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=38.0
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+|+.++.++|++++. + .+||.||||||++|+.+.|.|+++++.+
T Consensus 2 ~v~~l~~~~f~~~~~----~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~ 45 (101)
T cd02994 2 NVVELTDSNWTLVLE----G-EWMIEFYAPWCPACQQLQPEWEEFADWS 45 (101)
T ss_pred ceEEcChhhHHHHhC----C-CEEEEEECCCCHHHHHHhHHHHHHHHhh
Confidence 588999999998653 2 3899999999999999999999987754
No 64
>PLN02347 GMP synthetase
Probab=98.66 E-value=4.2e-07 Score=96.67 Aligned_cols=175 Identities=14% Similarity=0.207 Sum_probs=107.0
Q ss_pred HHHHHHHHHcC--CcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 102 EIMDRALEKFG--NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 102 eil~~a~~~~~--~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
+.++.+.+..+ ++++|++|||.||+++ +|+++ .+.++..+|+|+|.. ..|..+.++.+++++|++++++.-..
T Consensus 217 ~~i~~i~~~~~~~~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e-- 294 (536)
T PLN02347 217 EQIELIKATVGPDEHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASE-- 294 (536)
T ss_pred HHHHHHHHHhccCCeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcH--
Confidence 34455555554 4699999999999886 88888 677899999999965 55777777889999999998874332
Q ss_pred HHHHHHh-cCCCCCCcccchhhhcchhc---hhHHHHh---c---cC--cEEEecccccCCcc--CcCCC-----Cceec
Q 015013 177 VQALVRS-KGLFSFYEDGHQECCRVRKV---RPLRRAL---K---GL--RAWITGQRKDQSPG--TRSEI-----PVVQV 237 (414)
Q Consensus 177 ~~~~~~~-~G~~~~~~~~~~~Cc~~~Kv---~Pl~ral---~---~~--~~~itGiRrdES~~--~Ra~~-----~~~e~ 237 (414)
.+... .|. - ++..=|.+.|. +-+.+.. . +. +..+.|.-.++-.. .|... ..+..
T Consensus 295 --~fl~~l~~~---~--~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~ 367 (536)
T PLN02347 295 --RFLSKLKGV---T--DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKS 367 (536)
T ss_pred --HHHhhCCCC---C--ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceee
Confidence 22232 343 2 22222333333 4444333 1 22 55678886655321 33221 01100
Q ss_pred CCCCccccCCCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCC
Q 015013 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS 286 (414)
Q Consensus 238 d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~S 286 (414)
--.-.+.... -..--+.||.+++++||.+..++.|||.+-++++=|+.
T Consensus 368 hhn~~~l~~~-~~~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p~ 415 (536)
T PLN02347 368 HHNVGGLPKD-MKLKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPG 415 (536)
T ss_pred ecccccChHH-HHCccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcCC
Confidence 0000000000 01223799999999999999999999977788776654
No 65
>TIGR00552 nadE NAD+ synthetase. NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.
Probab=98.66 E-value=4.9e-07 Score=87.32 Aligned_cols=158 Identities=12% Similarity=0.158 Sum_probs=95.9
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~~P~~~~~ 177 (414)
+.|+..++..+ .+++|++|||.||+++ +|+.+. +.++..++++.+.. .++..++++++++++|++.+++.-... +
T Consensus 11 ~~l~~~v~~~~~~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~-~ 89 (250)
T TIGR00552 11 DFLRGYVQKSGAKGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI-A 89 (250)
T ss_pred HHHHHHHHHhCCCCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-H
Confidence 35555555543 6799999999999875 777775 43677777887743 466889999999999999887632221 2
Q ss_pred HHHHH-hcCCCCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeE
Q 015013 178 QALVR-SKGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (414)
Q Consensus 178 ~~~~~-~~G~~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ 252 (414)
..+.. ........ +....| |...|..-|....+ +..++.||.+.+... +... .+ + ....
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~----G~~t-----~~----g--d~~~ 153 (250)
T TIGR00552 90 ASFQAQTETGDELS-DFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML----GYFT-----KY----G--DGGC 153 (250)
T ss_pred HHHHHHhccccCCc-hHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh----CCee-----cc----c--CCcc
Confidence 11111 01111010 000112 34344555555443 456777887754321 1000 00 0 1123
Q ss_pred EEEeCccccHHHHHHHHHhCCCCC
Q 015013 253 KWNPVANVKGNDIWNFLRTMDVPI 276 (414)
Q Consensus 253 ki~PL~dWt~~DVw~Yi~~~~lP~ 276 (414)
.++||.+.++.||+.|.+.+++|.
T Consensus 154 ~i~PL~~l~K~eV~~lA~~~g~p~ 177 (250)
T TIGR00552 154 DIAPIGDLFKTQVYELAKRLNVPE 177 (250)
T ss_pred CccccCCCcHHHHHHHHHHHCccH
Confidence 589999999999999999999853
No 66
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.65 E-value=1.8e-08 Score=85.26 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
+.+..++.++|.+.+...+.+++|||.||||||++|+.|.|.|+++++.++.
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~ 55 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE 55 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 4678888899988776222248999999999999999999999998887653
No 67
>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase. The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity
Probab=98.64 E-value=1.5e-07 Score=96.23 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=89.0
Q ss_pred EEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHH----HHHHHhcCCC
Q 015013 115 IAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEV----QALVRSKGLF 187 (414)
Q Consensus 115 i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~-i~~~~P~~~~~----~~~~~~~G~~ 187 (414)
|+|+||||.||+++ +++.+. +.++..+++|+|..- +-.+.++++++.+|++ ++++.-..... ...+.....
T Consensus 1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~~-~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~- 78 (385)
T cd01999 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQPE-EEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANAL- 78 (385)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCcc-hhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCcc-
Confidence 57999999999875 777665 448999999999643 3358899999999985 66653221111 111111111
Q ss_pred CCCcccc---hhhhcchhchhHHHHh--ccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccc--
Q 015013 188 SFYEDGH---QECCRVRKVRPLRRAL--KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV-- 260 (414)
Q Consensus 188 ~~~~~~~---~~Cc~~~Kv~Pl~ral--~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dW-- 260 (414)
+.... ..+|+-....-+.++. .+.+++.+|.........|........+ +.+-.+.|+.+|
T Consensus 79 --~~g~y~l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~----------pel~ViaPlre~~~ 146 (385)
T cd01999 79 --YEGTYPLGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN----------PDLKIIAPWRDWEF 146 (385)
T ss_pred --ccCCCcCCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC----------CCCEEEcchhhhhc
Confidence 10000 0113222222222322 2667898988752111022222111112 235568999999
Q ss_pred -cHHHHHHHHHhCCCCCChh
Q 015013 261 -KGNDIWNFLRTMDVPINSL 279 (414)
Q Consensus 261 -t~~DVw~Yi~~~~lP~npL 279 (414)
+++||..|.+.+|||+.--
T Consensus 147 ~sr~ev~~~A~~~Gip~~~~ 166 (385)
T cd01999 147 LSREEEIEYAEEHGIPVPVT 166 (385)
T ss_pred CCHHHHHHHHHHcCCCCccc
Confidence 9999999999999998543
No 68
>PRK13980 NAD synthetase; Provisional
Probab=98.63 E-value=5.1e-07 Score=88.01 Aligned_cols=154 Identities=18% Similarity=0.241 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc--CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 101 LEIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT--GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 101 ~eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~--~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
...|+..+..++ .+++|++|||.||+++ +++.+. ..++..++++++...++..+.++++++++|++++++.-. ..
T Consensus 18 ~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~-~~ 96 (265)
T PRK13980 18 VDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEIT-PI 96 (265)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECH-HH
Confidence 356666666666 6799999999999875 777764 357899999999888889999999999999998776322 11
Q ss_pred HHHHHHhcCCCCCCcccc---hhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCe
Q 015013 177 VQALVRSKGLFSFYEDGH---QECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (414)
Q Consensus 177 ~~~~~~~~G~~~~~~~~~---~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~ 251 (414)
...+... ++.. ... ..|-++| ..-|....+ ++.++-||-+ +|.. . ..- ..+ +. +-
T Consensus 97 ~~~~~~~--~~~~--~~~~~~n~~aR~R-~~~L~~~A~~~g~lvlgTgn~-sE~~--~-G~~-----t~~----gD--~~ 156 (265)
T PRK13980 97 VDAFFSA--IPDA--DRLRVGNIMARTR-MVLLYDYANRENRLVLGTGNK-SELL--L-GYF-----TKY----GD--GA 156 (265)
T ss_pred HHHHHHH--cccc--cchHHHHHHHHHH-HHHHHHHHhhcCCEEEcCCCH-hHHH--h-CCc-----cCC----CC--cc
Confidence 2222211 1100 111 1222222 223333333 3334446643 3321 1 100 011 00 12
Q ss_pred EEEEeCccccHHHHHHHHHhCCCC
Q 015013 252 VKWNPVANVKGNDIWNFLRTMDVP 275 (414)
Q Consensus 252 ~ki~PL~dWt~~DVw~Yi~~~~lP 275 (414)
.-++||.++++.||+...+..|+|
T Consensus 157 ~~l~Pl~~l~K~eV~~la~~lgip 180 (265)
T PRK13980 157 VDLNPIGDLYKTQVRELARHLGVP 180 (265)
T ss_pred cCcccCCCCcHHHHHHHHHHHCch
Confidence 248999999999999999999987
No 69
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=98.63 E-value=5.3e-07 Score=86.98 Aligned_cols=160 Identities=18% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhcC--CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~~--~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~ 177 (414)
..|+..++..+ .+++|++|||.||+++ +++.+.. .++..++++++...++..+.++++++++|++.+++..... +
T Consensus 12 ~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~ 90 (248)
T cd00553 12 LFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-V 90 (248)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-H
Confidence 34444444443 5799999999999875 7777753 5789999999987889999999999999999887643322 2
Q ss_pred HHHHHhcCC-CCCCcccchhh--hcchhchhHHHHhccC--cEEEecccccCCccCcCCCCceecCCCCccccCCCCCeE
Q 015013 178 QALVRSKGL-FSFYEDGHQEC--CRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV 252 (414)
Q Consensus 178 ~~~~~~~G~-~~~~~~~~~~C--c~~~Kv~Pl~ral~~~--~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ 252 (414)
..+...... ......+...| |...+..-|....+.. .+.-||. ++|.. . .. . ..+ + .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~-~--G~--~---t~~----g--d~~~ 155 (248)
T cd00553 91 EAFLALLGESGGSELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL-L--GY--F---TKY----G--DGAA 155 (248)
T ss_pred HHHHHHHhhhcccchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH-h--CC--e---ecc----C--Cccc
Confidence 222221100 00000111112 2222333343433333 3444554 33332 1 11 0 011 0 1124
Q ss_pred EEEeCccccHHHHHHHHHhCCCCCC
Q 015013 253 KWNPVANVKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 253 ki~PL~dWt~~DVw~Yi~~~~lP~n 277 (414)
.++||.+.++.||+.+.+..++|.+
T Consensus 156 ~i~Pl~~l~K~eV~~la~~~~ip~~ 180 (248)
T cd00553 156 DINPIGDLYKTQVRELARYLGVPES 180 (248)
T ss_pred CccccCCCcHHHHHHHHHHHCchHH
Confidence 5899999999999999999998753
No 70
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=98.63 E-value=3.2e-07 Score=93.68 Aligned_cols=146 Identities=14% Similarity=0.237 Sum_probs=93.2
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhC-------CcEEEEcCCh-HHHHHHHHh
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-------IRIEYMFPDA-VEVQALVRS 183 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~g-------l~i~~~~P~~-~~~~~~~~~ 183 (414)
+++++++|||+||.++ +|+.+.+.++..+|+|+| ++..+-+.++++.++ +++.++.... ..+...+..
T Consensus 181 gkvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~ 257 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKE 257 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHH
Confidence 4799999999999875 888889999999999998 667788888888776 4455553321 123232222
Q ss_pred cCCCCCCcccchhh--hcchhchhHHHHhc--cCcEEEecccccCCcc-CcCCCCceecCCCCccccCCCCCeEEEEeCc
Q 015013 184 KGLFSFYEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 258 (414)
Q Consensus 184 ~G~~~~~~~~~~~C--c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~-~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~ 258 (414)
... ....| |......-+.+..+ ++++++||.-.+|-.. +-.++..+... ..+..++||+
T Consensus 258 ~~~------~~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqvaSQtl~Nl~~i~~~----------~~lpilRPLi 321 (381)
T PRK08384 258 LKK------ENYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVASQTLENMYIVSQA----------SDLPIYRPLI 321 (381)
T ss_pred hcc------CCCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHHHHHHHHHHHHhcc----------CCCcEEeeCC
Confidence 111 11134 33333333333333 5679999988777320 00122111111 1355799999
Q ss_pred cccHHHHHHHHHhCC-CCCC
Q 015013 259 NVKGNDIWNFLRTMD-VPIN 277 (414)
Q Consensus 259 dWt~~DVw~Yi~~~~-lP~n 277 (414)
.++++||-+|.++.| .++.
T Consensus 322 ~~dK~EIi~~Ar~iGT~~~s 341 (381)
T PRK08384 322 GMDKEEIVAIAKTIGTFELS 341 (381)
T ss_pred CCCHHHHHHHHHHcCCcccc
Confidence 999999999999999 6654
No 71
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.62 E-value=6.2e-08 Score=79.06 Aligned_cols=47 Identities=21% Similarity=0.562 Sum_probs=41.9
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
|..+++++|++.+. ..++++||.||++||++|+.+.|.|+++++.+.
T Consensus 1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~ 47 (103)
T PF00085_consen 1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYK 47 (103)
T ss_dssp SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTT
T ss_pred CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceecccccccc
Confidence 56789999999887 358999999999999999999999999877765
No 72
>PRK13820 argininosuccinate synthase; Provisional
Probab=98.61 E-value=1.5e-07 Score=96.30 Aligned_cols=149 Identities=15% Similarity=0.214 Sum_probs=89.4
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHHhcC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVRSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~----~~~~~G 185 (414)
++|+|++|||.||+++ +++++. +. ++.++++|+|. .++-.+.++++++.+|++++++.-.....++ .+..+.
T Consensus 3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~ 81 (394)
T PRK13820 3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANA 81 (394)
T ss_pred CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCc
Confidence 4699999999999875 777664 65 89999999984 3456778999999999998876433221211 122111
Q ss_pred CCCCCcccchhhhcchhchhHHHHhc--cCcEEEeccccc--CCccCcCCCCceecCCCCccccCCCCCeEEEEeCcc--
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKD--QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN-- 259 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrd--ES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~d-- 259 (414)
...-+-... ..|+.....-+.++.+ +.+++.+|.... +- .|.... +. .. ++--+.|+-+
T Consensus 82 ~~~gYpl~~-~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq--~rfe~~-~~------a~-----~l~viaP~re~~ 146 (394)
T PRK13820 82 LYEGYPLGT-ALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQ--LRFEAV-FR------AS-----DLEVIAPIRELN 146 (394)
T ss_pred cccCCcCcH-HHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchH--HHHHHh-hH------hh-----cCeeeCchhccC
Confidence 100000000 1132222333334333 567899998433 22 121111 10 00 1223579888
Q ss_pred ccHHHHHHHHHhCCCCCC
Q 015013 260 VKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP~n 277 (414)
++.+||.+|.++++||+.
T Consensus 147 ltK~ei~~ya~~~gip~~ 164 (394)
T PRK13820 147 LTREWEIEYAKEKGIPVP 164 (394)
T ss_pred CCHHHHHHHHHHcCCCCC
Confidence 599999999999999984
No 73
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=2.7e-08 Score=103.41 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=47.7
Q ss_pred CCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHh
Q 015013 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALV 404 (414)
Q Consensus 350 ~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~ 404 (414)
..+.|+.|+.+||+.++. .+..+||.||||||+||++++|.|+++++.+...
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~ 74 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE 74 (493)
T ss_pred cccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc
Confidence 457899999999999885 8899999999999999999999999999999765
No 74
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.61 E-value=6.3e-08 Score=86.72 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=43.1
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
..+..++.++|++.+. .+.+++|||+||||||++|++|.|.|+++++.+.
T Consensus 28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~ 77 (152)
T cd02962 28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYN 77 (152)
T ss_pred CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc
Confidence 5788899999998775 2456799999999999999999999999887764
No 75
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=98.60 E-value=3e-07 Score=93.83 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=92.1
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCc-HHHHHHHHHHHHHh---CC--cEEEEcCChHHHHHHHHhcC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PETYRFFDEVEKHF---GI--RIEYMFPDAVEVQALVRSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~f-pET~~~v~~l~~~~---gl--~i~~~~P~~~~~~~~~~~~G 185 (414)
+++++++|||.||+++ +++.+.+.++..+|+|+|... .+..+.++++++++ +. ++..+ + .......+....
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v-~-~~~~~~~i~~~~ 250 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVF-D-FTDVQEEIIHII 250 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEE-e-CHHHHHHHHhcC
Confidence 4799999999999875 888888889999999998544 57788899999887 43 44444 2 222222222111
Q ss_pred CCCCCcccchhhhcchhchhHHHHh-----ccCcEEEecccccCCc-cCcCCCCceecCCCCccccCCCCCeEEEEeCcc
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRAL-----KGLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 259 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ral-----~~~~~~itGiRrdES~-~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~d 259 (414)
....+|..+|..-++.+. .+.+.++||.-.+|-. .++.++...... ....-++||+.
T Consensus 251 -------~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~ 313 (371)
T TIGR00342 251 -------PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIG 313 (371)
T ss_pred -------CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCC
Confidence 112356555553222221 2668999999988853 122222221100 12334789999
Q ss_pred ccHHHHHHHHHhCCC
Q 015013 260 VKGNDIWNFLRTMDV 274 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~l 274 (414)
++++||.+|.++.|.
T Consensus 314 ~~K~EIi~~a~~iG~ 328 (371)
T TIGR00342 314 MDKEEIIELAKEIGT 328 (371)
T ss_pred CCHHHHHHHHHHhCC
Confidence 999999999999993
No 76
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.60 E-value=5.5e-08 Score=80.79 Aligned_cols=43 Identities=19% Similarity=0.356 Sum_probs=36.2
Q ss_pred cCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 357 l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
-+.++|+.++. .++++||.|||+||++|+.|.|.|+++++.++
T Consensus 5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~ 47 (102)
T cd02948 5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELG 47 (102)
T ss_pred cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcC
Confidence 45677777664 78999999999999999999999998777654
No 77
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.59 E-value=5.2e-08 Score=82.29 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=39.5
Q ss_pred EecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 355 ~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
..++.++|++.+...+.+++|||.||||||++|+.+.|.|+++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~ 54 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELE 54 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHH
Confidence 456778887655434578999999999999999999999999888875
No 78
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.5e-08 Score=95.13 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=46.1
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.|+++|..||++.+...+...||||+||||||++|+.+.|.+++++.-+..
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G 74 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG 74 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC
Confidence 489999999999999888888999999999999999999999998766544
No 79
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.57 E-value=6.7e-08 Score=91.88 Aligned_cols=52 Identities=29% Similarity=0.658 Sum_probs=44.0
Q ss_pred CCCeEecCccchHHHHhhh--cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 351 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~--~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
...|+.+++++|++++... ..+++|+|.||||||++|+.|.|.|+++++.+.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~ 82 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALK 82 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcC
Confidence 3578999999999987522 136899999999999999999999999887765
No 80
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.56 E-value=8.5e-08 Score=78.70 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=41.1
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+|..++.++++..+. +.+++++|.|||+||++|+.+.|.|.++++.+.
T Consensus 1 ~v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (103)
T cd03001 1 DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALK 48 (103)
T ss_pred CeEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc
Confidence 367889999998775 466779999999999999999999999877664
No 81
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.56 E-value=4.4e-08 Score=83.20 Aligned_cols=51 Identities=4% Similarity=0.029 Sum_probs=39.7
Q ss_pred cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH-hhcCCCCc
Q 015013 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL-VMGFKPEL 411 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~-~~~~~~~~ 411 (414)
+.+++.+.. ..+++|||+|+|+||++|+.|.|.|+++++.+.- .+.++-|+
T Consensus 3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDV 54 (114)
T cd02986 3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDV 54 (114)
T ss_pred HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEec
Confidence 345555542 2689999999999999999999999999998865 55555444
No 82
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.56 E-value=4.2e-08 Score=86.69 Aligned_cols=53 Identities=8% Similarity=0.132 Sum_probs=40.1
Q ss_pred CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhc-CCCCc
Q 015013 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMG-FKPEL 411 (414)
Q Consensus 358 ~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~-~~~~~ 411 (414)
+..+|++.+. ...+++|||+|||+||+||+.|.|.|+++++.+..+.. ++.|+
T Consensus 10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDV 63 (142)
T PLN00410 10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDI 63 (142)
T ss_pred CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEEC
Confidence 3556666554 23688999999999999999999999999888754333 44443
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.55 E-value=1.1e-07 Score=77.99 Aligned_cols=46 Identities=15% Similarity=0.401 Sum_probs=39.9
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
++.++.++|+..+. . +++||.|||+||++|+.+.|.|+++++.+..
T Consensus 2 ~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~ 47 (102)
T cd03005 2 VLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNN 47 (102)
T ss_pred eeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhc
Confidence 67889999998774 3 3599999999999999999999998888754
No 84
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.53 E-value=1.3e-07 Score=77.65 Aligned_cols=47 Identities=21% Similarity=0.552 Sum_probs=41.0
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.|+.++..+|+..+. .+++++|.|||+||++|+.+.|.++++++.+.
T Consensus 1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~ 47 (104)
T cd02997 1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELK 47 (104)
T ss_pred CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHh
Confidence 367888999988775 56699999999999999999999999887775
No 85
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.53 E-value=6.6e-08 Score=82.17 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=42.9
Q ss_pred CCeEecCc-cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCC
Q 015013 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKP 409 (414)
Q Consensus 352 ~~v~~l~~-~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~ 409 (414)
+.+..++. ++|++.+. .+++|||.||+|||++|+.|.|.++++++.++.+..++.
T Consensus 4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~V 59 (113)
T cd02989 4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKV 59 (113)
T ss_pred CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEE
Confidence 45666766 67777664 678999999999999999999999998887654433333
No 86
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.53 E-value=6.7e-08 Score=88.54 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=47.8
Q ss_pred CCeEecCc-cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCCCc
Q 015013 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKPEL 411 (414)
Q Consensus 352 ~~v~~l~~-~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~~~ 411 (414)
+.++.++. ++|.+.+...+.+.+|||+||||||++|+.|.|.|+++++.+..+.+++.|.
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~ 122 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRA 122 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEec
Confidence 67888888 8888877633334599999999999999999999999998876555555543
No 87
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=98.52 E-value=7.1e-07 Score=91.82 Aligned_cols=168 Identities=15% Similarity=0.203 Sum_probs=101.4
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCC-CCcHHHHHHHHHHHHHhC-----CcEEEEcCChHHHHHHHHhcC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFG-----IRIEYMFPDAVEVQALVRSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG-~~fpET~~~v~~l~~~~g-----l~i~~~~P~~~~~~~~~~~~G 185 (414)
+++++++|||.||+++ +++.+.+.++..+|+++. +.-++..+.+.+++++++ ++++++.- ...+..+...
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~--~~~~~~i~~~- 253 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPF--TEIQEEIKKK- 253 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEEC--HHHHHHHhhc-
Confidence 4799999999999875 888788888888888773 444556677777777774 77776632 1221212111
Q ss_pred CCCCCcccchhhhcchhchhHHHH---h--ccCcEEEecccccCCc-cCcCCCCceecCCCCccccCCCCCeEEEEeCcc
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRA---L--KGLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN 259 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ra---l--~~~~~~itGiRrdES~-~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~d 259 (414)
. ..+.+|..+|..-++-+ . .++.+++||...+|-. .++.++..+ +.. ..+.-++||+.
T Consensus 254 ~------~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i--~~~--------~~~~V~rPLig 317 (394)
T PRK01565 254 V------PESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAI--NAV--------TNLPVLRPLIG 317 (394)
T ss_pred C------CCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHH--hhc--------cCcEEEECCCC
Confidence 1 11234555554333222 1 2667999999987753 123333221 110 12445799999
Q ss_pred ccHHHHHHHHHhCCCCCChhhhCCCCCCCCccCCCCCCCCCcccccc
Q 015013 260 VKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGR 306 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC~~CT~~v~~g~~~R~GR 306 (414)
+++.||.++.++.|+. ++..+ ++-.| ||+ ..++...-..+
T Consensus 318 ~~K~EI~~lAr~iG~~--~~s~~--p~~~c--c~~-~~~~~p~t~~~ 357 (394)
T PRK01565 318 MDKEEIIEIAKEIGTY--DISIL--PYEDC--CTI-FAPKNPKTKPK 357 (394)
T ss_pred CCHHHHHHHHHHhCCH--HHhcC--CCcCe--eee-ecCCCCccCCC
Confidence 9999999999999942 33333 34557 774 23454433433
No 88
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=98.52 E-value=1.7e-06 Score=82.72 Aligned_cols=162 Identities=13% Similarity=0.127 Sum_probs=95.8
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCCh-HHHHH-HHHhcC--C
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDA-VEVQA-LVRSKG--L 186 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~-i~~~~P~~-~~~~~-~~~~~G--~ 186 (414)
++++|+||||.||+++ .++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+. ..+.. .+-... .
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~ 81 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPV 81 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccC
Confidence 3689999999999875 67776666789999999988888889999999999996 65542211 00000 000000 0
Q ss_pred CCCC---cccchhhhcchhc--hhHHHHh---ccCcEEEecccccCCccCcCCCCce-ec-CCCCccccCCCCCeEEEEe
Q 015013 187 FSFY---EDGHQECCRVRKV--RPLRRAL---KGLRAWITGQRKDQSPGTRSEIPVV-QV-DPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 187 ~~~~---~~~~~~Cc~~~Kv--~Pl~ral---~~~~~~itGiRrdES~~~Ra~~~~~-e~-d~~~~~~~~~~~~~~ki~P 256 (414)
+... ...+..|---|+. .-+...+ .+.+.+++|...++..+-|-..+-+ +. +.... .+....+.-..|
T Consensus 82 p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~--~~~~~~i~I~aP 159 (231)
T PRK11106 82 PDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVS--LGMAKDIRFETP 159 (231)
T ss_pred CccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHH--hccCCCcEEEec
Confidence 1000 1112223222221 1222211 3677899999998843355542211 00 00000 000123556799
Q ss_pred CccccHHHHHHHHHhCC-CCC
Q 015013 257 VANVKGNDIWNFLRTMD-VPI 276 (414)
Q Consensus 257 L~dWt~~DVw~Yi~~~~-lP~ 276 (414)
+.+|++.||+..-+..+ +|+
T Consensus 160 l~~lsK~eI~~l~~~lg~v~~ 180 (231)
T PRK11106 160 LMWLNKAETWALADYYGQLDL 180 (231)
T ss_pred CCCCCHHHHHHHHHHcCCccc
Confidence 99999999999999999 887
No 89
>PRK00509 argininosuccinate synthase; Provisional
Probab=98.51 E-value=6.1e-07 Score=91.92 Aligned_cols=148 Identities=22% Similarity=0.282 Sum_probs=90.8
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHH-----HHHHhc
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQ-----ALVRSK 184 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~-----~~~~~~ 184 (414)
++++|+||||.||+++ +++.+. +.++..+++|+|.. +-++.++++++++|+ +++++.-. ..+. ..+...
T Consensus 3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~-~ef~~~~i~~~i~~n 79 (399)
T PRK00509 3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLR-EEFVRDYVFPAIRAN 79 (399)
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCH-HHHHHHhHHHHHHhC
Confidence 4799999999999875 777775 88999999999975 557788899999997 45554211 1221 122221
Q ss_pred CCC-CCCcccchhhhcchhchhHHHHhc--cCcEEEecccc---cCCccCcCCCCceecCCCCccccCCCCCeEEEEeCc
Q 015013 185 GLF-SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA 258 (414)
Q Consensus 185 G~~-~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRr---dES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~ 258 (414)
... +-+- ..-..|+-.-..-|.++.+ +.+++.+|... ||+ |......-.+| .+--+.|+.
T Consensus 80 ~~y~g~yp-l~~~lcr~~i~~~l~~~A~~~G~~~IA~G~t~kGnDq~---rf~~g~~al~p----------el~VisPlr 145 (399)
T PRK00509 80 ALYEGKYP-LGTALARPLIAKKLVEIARKEGADAVAHGCTGKGNDQV---RFELGIAALAP----------DLKVIAPWR 145 (399)
T ss_pred hHhcCcCC-CchHHHHHHHHHHHHHHHHHcCCCEEEeCCCcCCCCHH---HHHHHHHHhCC----------CCeeecchh
Confidence 110 0000 0111122222333444333 56788989864 332 32211111222 234589999
Q ss_pred cc---cHHHHHHHHHhCCCCCC
Q 015013 259 NV---KGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 259 dW---t~~DVw~Yi~~~~lP~n 277 (414)
+| |.+|+-+|.+++|||+.
T Consensus 146 e~~~~tK~eir~~A~~~Gipv~ 167 (399)
T PRK00509 146 EWDLKSREELIAYAEEHGIPIP 167 (399)
T ss_pred hcCCCCHHHHHHHHHHcCCCCC
Confidence 99 99999999999999984
No 90
>PRK04527 argininosuccinate synthase; Provisional
Probab=98.49 E-value=1e-06 Score=90.07 Aligned_cols=145 Identities=18% Similarity=0.233 Sum_probs=94.3
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH--------
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR-------- 182 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~~~~~-------- 182 (414)
++++|+||||-||+++ +++.+.+.++..+++|.|....+=++.++++++++|+ +.+++.-.....++++.
T Consensus 3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~ 82 (400)
T PRK04527 3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG 82 (400)
T ss_pred CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence 4799999999999875 7887778889999999998767777888999999998 46666333332333331
Q ss_pred hcCCCCCCcccchhhh-cchhchhHHHHhc--cCcEEEeccc---ccCCccCcCCCCceecCCCCccccCCCCCeEEEEe
Q 015013 183 SKGLFSFYEDGHQECC-RVRKVRPLRRALK--GLRAWITGQR---KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 183 ~~G~~~~~~~~~~~Cc-~~~Kv~Pl~ral~--~~~~~itGiR---rdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~P 256 (414)
..|.. + .-|| +-.|..-|.+..+ +.+++.+|.. -||.. -|..+..+. .+--+.|
T Consensus 83 y~G~y--P----l~~~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~r-frpg~~Al~-------------el~ViaP 142 (400)
T PRK04527 83 YQGQY--P----LLVSDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVR-FDLAVKALG-------------DYQIVAP 142 (400)
T ss_pred hcCCC--C----CccccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhh-ccHHHHHhh-------------cCCccch
Confidence 11221 1 1222 2224444444443 5679999985 33331 222222221 1224799
Q ss_pred Cccc------cHHHHHHHHHhCCCCCC
Q 015013 257 VANV------KGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 257 L~dW------t~~DVw~Yi~~~~lP~n 277 (414)
+.+| +.+|.-+|+++||||+.
T Consensus 143 lre~~~~k~~~R~~~i~ya~~~gipv~ 169 (400)
T PRK04527 143 IREIQKEHTQTRAYEQKYLEERGFGVR 169 (400)
T ss_pred HHHhcCcccccHHHHHHHHHHcCCCCC
Confidence 9998 56778999999999984
No 91
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.49 E-value=2e-07 Score=75.90 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=34.1
Q ss_pred chHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 361 GMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 361 ~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+|++.+. .+.++++||.|||+||++|+.+.|.|+++++.+.
T Consensus 2 ~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~ 42 (96)
T cd02956 2 NFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ 42 (96)
T ss_pred ChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhC
Confidence 5666664 2457899999999999999999999999887764
No 92
>PLN00200 argininosuccinate synthase; Provisional
Probab=98.48 E-value=1e-06 Score=90.50 Aligned_cols=147 Identities=21% Similarity=0.285 Sum_probs=89.4
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcE-EEEcCChHHHHHHHHhcCCCCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRI-EYMFPDAVEVQALVRSKGLFSF 189 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i-~~~~P~~~~~~~~~~~~G~~~~ 189 (414)
++|+|+||||.||+++ +++.+. +.++..+++|+|. ..+-++.++++++++|++. +++ .-.. ++.+..-.+.+
T Consensus 6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~~A~~lGi~~~~v~-dl~~---ef~~~~i~p~i 80 (404)
T PLN00200 6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEAKAKASGAKQLVVK-DLRE---EFVRDYIFPCL 80 (404)
T ss_pred CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEE-eCHH---HHHHhhcCHHH
Confidence 4799999999999875 777665 7789999999996 3466788999999999964 444 2111 22221111111
Q ss_pred Ccccchhhhcchhc---hhH-----HHHh--ccCcEEEecccc---cCCccCcCCCCceecCCCCccccCCCCCeEEEEe
Q 015013 190 YEDGHQECCRVRKV---RPL-----RRAL--KGLRAWITGQRK---DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv---~Pl-----~ral--~~~~~~itGiRr---dES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~P 256 (414)
..+....=|+.+|. +|+ .++. .+.+++..|... ||+ |......-.+| .+--+.|
T Consensus 81 ~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq~---rf~~~~~al~p----------el~ViaP 147 (404)
T PLN00200 81 RANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQV---RFELTFFALNP----------ELKVVAP 147 (404)
T ss_pred HcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcHH---HHHHHHHHhCC----------CCeeeCc
Confidence 11111111333343 222 1222 256788888764 333 32211111222 2345799
Q ss_pred Ccccc---HHHHHHHHHhCCCCCC
Q 015013 257 VANVK---GNDIWNFLRTMDVPIN 277 (414)
Q Consensus 257 L~dWt---~~DVw~Yi~~~~lP~n 277 (414)
+.+|. .+|+.+|.+++|||+.
T Consensus 148 lre~~~~~r~e~~~~A~~~Gipv~ 171 (404)
T PLN00200 148 WREWDIKGREDLIEYAKKHNIPVP 171 (404)
T ss_pred hhhcCCCCHHHHHHHHHHcCCCCC
Confidence 99985 9999999999999864
No 93
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.47 E-value=2.2e-07 Score=76.14 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=40.9
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
|+.++.+++++.+. +.++++||.|||+||++|+.+.|.|+++++.+.
T Consensus 2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~ 48 (105)
T cd02998 2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFA 48 (105)
T ss_pred eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhC
Confidence 67888999998665 556699999999999999999999999888764
No 94
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.43 E-value=1.4e-07 Score=87.68 Aligned_cols=59 Identities=8% Similarity=0.046 Sum_probs=46.9
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCCC
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKPE 410 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~~ 410 (414)
+.|..++.++|...+...+.+.+|||+||++||++|+.|.|.|++++..+...-+++.|
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ 140 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKII 140 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 67888999999876652333468999999999999999999999999988654444443
No 95
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=98.40 E-value=3e-06 Score=85.66 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=76.1
Q ss_pred cEEEEechHHHHHHH-HHH-HhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 015013 114 DIAIAFSGAEDVALI-EYA-HLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 191 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~-~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~ 191 (414)
.++|++|||+||+++ +++ .+.+.++.++++|+|..-+...+.++++++++|++++++.++...+..+... .+... .
T Consensus 61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~-~~~~~-~ 138 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRA-YFKKV-G 138 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHH-HHhcc-C
Confidence 499999999999875 676 4467677779999999878888999999999999999888876654433221 11100 1
Q ss_pred ccchhhhcchhchhHHHHhc-cCcEEEecccccC
Q 015013 192 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQ 224 (414)
Q Consensus 192 ~~~~~Cc~~~Kv~Pl~ral~-~~~~~itGiRrdE 224 (414)
.....|...+...+.+.+.+ +..++++|...+|
T Consensus 139 ~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE 172 (343)
T TIGR03573 139 DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE 172 (343)
T ss_pred CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence 11223444555555555544 5789999999886
No 96
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=98.38 E-value=3.8e-06 Score=85.28 Aligned_cols=157 Identities=14% Similarity=0.072 Sum_probs=95.6
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHH--hc
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVR--SK 184 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~----~~~--~~ 184 (414)
+++|+|++|||.||+++ +++.+.+.++..+++|+. .+..+.++++++++|++++++.-....... ++. ..
T Consensus 5 ~~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~ 81 (362)
T PRK14664 5 KKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQ 81 (362)
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHc
Confidence 35799999999999874 778888888999999874 233456899999999998876433221111 111 12
Q ss_pred CCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceec-CC----CCccccCCCCCe--EEEE
Q 015013 185 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFEGLEGGVGSL--VKWN 255 (414)
Q Consensus 185 G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~-d~----~~~~~~~~~~~~--~ki~ 255 (414)
|.. + +..-.|-...|..-|.++.+ +.+.+.||.-..-.. .-........ |. .|.-.. ..... ..+.
T Consensus 82 G~t--p-npC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~-l~~~~l~~~if 156 (362)
T PRK14664 82 GRT--P-NPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWR-LGQDILRRCIF 156 (362)
T ss_pred CCC--C-CCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHh-cCHHHHhHHhc
Confidence 320 1 11223444667776766654 567889998864432 1001111111 11 110000 00011 2479
Q ss_pred eCccccHHHHHHHHHhCCCCC
Q 015013 256 PVANVKGNDIWNFLRTMDVPI 276 (414)
Q Consensus 256 PL~dWt~~DVw~Yi~~~~lP~ 276 (414)
||.+++++||..|.+++|||.
T Consensus 157 PLg~~~K~evr~~A~~~gl~~ 177 (362)
T PRK14664 157 PLGNYTKQTVREYLREKGYEA 177 (362)
T ss_pred cCccCCHHHHHHHHHHcCCCC
Confidence 999999999999999999986
No 97
>PRK10996 thioredoxin 2; Provisional
Probab=98.37 E-value=4.3e-07 Score=79.98 Aligned_cols=52 Identities=17% Similarity=0.470 Sum_probs=42.8
Q ss_pred hccCCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 347 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 347 dl~~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++|+ +.++.++.++|++++. .+++|+|.|||+||++|+.|.|.|+++++.+.
T Consensus 31 ~~~~-~~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~ 82 (139)
T PRK10996 31 DLFD-GEVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS 82 (139)
T ss_pred ccCC-CCCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence 3453 3467789999998764 68999999999999999999999999776543
No 98
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.33 E-value=5.6e-07 Score=79.60 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=34.1
Q ss_pred ccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 359 ~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
...++..+ ..++++||.|||+||++|+.|.|.|+++++.+.
T Consensus 10 ~~~~~~a~---~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~ 50 (142)
T cd02950 10 STPPEVAL---SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG 50 (142)
T ss_pred cCCHHHHH---hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc
Confidence 34555544 478999999999999999999999999887764
No 99
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.32 E-value=5.4e-07 Score=74.82 Aligned_cols=39 Identities=23% Similarity=0.682 Sum_probs=32.9
Q ss_pred cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 360 TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++|+++ ..++++||.|||+||++|+.+.|.|+++++.+.
T Consensus 7 ~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~ 45 (104)
T cd03000 7 DSFKDV----RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELK 45 (104)
T ss_pred hhhhhh----ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHH
Confidence 567763 256799999999999999999999999887763
No 100
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.31 E-value=8.2e-07 Score=75.96 Aligned_cols=35 Identities=14% Similarity=0.440 Sum_probs=30.5
Q ss_pred hhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 368 LDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 368 ~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
....+++|||+|||+||++|+.|.|.+.+..++.+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~ 49 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE 49 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh
Confidence 34678999999999999999999999999777654
No 101
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.8e-07 Score=86.35 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=43.4
Q ss_pred CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCCCc
Q 015013 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKPEL 411 (414)
Q Consensus 358 ~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~~~ 411 (414)
++.+|+.-+. ....+.|+|+|+|.||+||++++|+|+.++++|...++++-||
T Consensus 8 ~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdV 60 (288)
T KOG0908|consen 8 SDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDV 60 (288)
T ss_pred CcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeH
Confidence 3455655444 2466799999999999999999999999999998888877665
No 102
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.28 E-value=4e-07 Score=78.23 Aligned_cols=42 Identities=17% Similarity=0.526 Sum_probs=33.7
Q ss_pred cchHHHHhhhcCCCcEEEEEeC-------CCChhhHhHHHHHHHHHHHHH
Q 015013 360 TGMENLARLDHRQEPWLVVLYA-------PWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyA-------pWC~~Ck~m~p~~ee~~~i~a 402 (414)
++|.+.+. ...+++|||.||| +||++|+.|+|.++++++.++
T Consensus 10 ~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 10 EEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred HHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 44555444 1236899999999 999999999999999988876
No 103
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.24 E-value=1.6e-06 Score=70.51 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=34.6
Q ss_pred ccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 359 ~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++|++++... .+++|+|.||++||++|+.|.|.|+++++.+
T Consensus 2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~ 43 (97)
T cd02984 2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEA 43 (97)
T ss_pred HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHh
Confidence 45677777622 2699999999999999999999999987774
No 104
>PTZ00102 disulphide isomerase; Provisional
Probab=98.24 E-value=1.9e-06 Score=90.00 Aligned_cols=50 Identities=16% Similarity=0.363 Sum_probs=44.3
Q ss_pred CCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+.|..++.++|++.+. +.+++|||.||||||++|+.|.|.|+++++.+.
T Consensus 356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~ 405 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYK 405 (477)
T ss_pred CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhc
Confidence 45789999999999865 678999999999999999999999999887764
No 105
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.23 E-value=1.3e-06 Score=75.25 Aligned_cols=48 Identities=6% Similarity=0.023 Sum_probs=41.2
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChh--hH--hHHHHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--VIDVFMQIRFQII 401 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~--Ck--~m~p~~ee~~~i~ 401 (414)
+.|+.++++||++.+. +...++|+.|||+||++ |+ +|+|++++++.-+
T Consensus 9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~ 60 (120)
T cd03065 9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQV 60 (120)
T ss_pred cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHH
Confidence 4788899999999887 67789999999999987 99 8899998876555
No 106
>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome. In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.
Probab=98.22 E-value=4.3e-06 Score=78.77 Aligned_cols=173 Identities=19% Similarity=0.280 Sum_probs=86.7
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCC-hHHH--HHHHHhc-CCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPD-AVEV--QALVRSK-GLF 187 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~-~~~~--~~~~~~~-G~~ 187 (414)
+++|.||||.||+++ +++.+.+.++..+++|-|.....-++.++++.+++|+ +.+++.-. ...+ ..+.... .++
T Consensus 1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~ 80 (209)
T PF06508_consen 1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVP 80 (209)
T ss_dssp EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----
T ss_pred CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCc
Confidence 468899999999875 7788888889999999998888889999999999999 77666322 1100 0111111 011
Q ss_pred CCCcccchhhhcchhchhHHHHh-----------ccCcEEEecccccCCccCcCCCCce-e-cCCCCccccCCCCCeEEE
Q 015013 188 SFYEDGHQECCRVRKVRPLRRAL-----------KGLRAWITGQRKDQSPGTRSEIPVV-Q-VDPVFEGLEGGVGSLVKW 254 (414)
Q Consensus 188 ~~~~~~~~~Cc~~~Kv~Pl~ral-----------~~~~~~itGiRrdES~~~Ra~~~~~-e-~d~~~~~~~~~~~~~~ki 254 (414)
.. +..... .-.-.-|.+..+ .+.+.+++|.-+++..+-....+.+ + .+..+. ....+++.-.
T Consensus 81 ~~-~~~~~~--~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~--~~~~~~v~i~ 155 (209)
T PF06508_consen 81 EE-EYSEES--IPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLN--LGEGGPVRIE 155 (209)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHH--HHHTS--EEE
T ss_pred cc-ccccCC--CCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHH--hcCCCCEEEE
Confidence 00 000000 000112222211 1567889999988853122212111 0 000000 0011235557
Q ss_pred EeCccccHHHHHHHHHhCCCCCChhhhCCCCC----CCCccC
Q 015013 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYIS----IGCEPC 292 (414)
Q Consensus 255 ~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~S----iGC~~C 292 (414)
.|+.+||+.||+....+.++|+.--|.+ |.+ .+|-.|
T Consensus 156 ~P~~~~tK~eiv~~~~~lg~~~~~T~SC-y~~~~~~~~CG~C 196 (209)
T PF06508_consen 156 TPLIDLTKAEIVKLGVELGVPLELTWSC-YRGGEKGKHCGRC 196 (209)
T ss_dssp -TTTT--HHHHHHHHHHTTHHHHH-B-S-TTS--BTTTTSSS
T ss_pred ecCCCCCHHHHHHHHHHcCCCHHHccCC-CCCCCCCCCCCCC
Confidence 9999999999999999999887666665 333 455555
No 107
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.22 E-value=1.7e-06 Score=74.58 Aligned_cols=44 Identities=9% Similarity=0.067 Sum_probs=36.2
Q ss_pred eEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHH
Q 015013 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 354 v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i 400 (414)
+..++.+++.+.+. .++.++|.|+++|||+|+.|.|.|+++++.
T Consensus 8 ~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~ 51 (122)
T TIGR01295 8 LEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQ 51 (122)
T ss_pred ceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHh
Confidence 34566666666554 788899999999999999999999998765
No 108
>PTZ00051 thioredoxin; Provisional
Probab=98.22 E-value=8.2e-07 Score=72.39 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=34.1
Q ss_pred ccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 359 ~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++.++ +.+++++|.||++||++|+.+.|.|+++++.+.
T Consensus 8 ~~~~~~~~---~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~ 48 (98)
T PTZ00051 8 QAEFESTL---SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT 48 (98)
T ss_pred HHHHHHHH---hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC
Confidence 45666655 478899999999999999999999999877543
No 109
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.20 E-value=1.1e-06 Score=72.66 Aligned_cols=39 Identities=18% Similarity=0.377 Sum_probs=30.8
Q ss_pred chHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHH---HHHHHHHH
Q 015013 361 GMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFM---QIRFQIIA 402 (414)
Q Consensus 361 ~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~---ee~~~i~a 402 (414)
.|++.+ ..++++||.|||+||++|+.|.|.+ +++.+.+.
T Consensus 3 ~~~~~~---~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~ 44 (104)
T cd02953 3 ALAQAL---AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK 44 (104)
T ss_pred HHHHHH---HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh
Confidence 455544 4789999999999999999999988 55555554
No 110
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.19 E-value=1.9e-06 Score=70.22 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=36.7
Q ss_pred cCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 357 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 357 l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
|+.++|++.+. .+++++|.||++||++|+.+.|.|+++++.+.
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~ 43 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELK 43 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhc
Confidence 46778888764 78999999999999999999999998776654
No 111
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.14 E-value=3.3e-06 Score=67.80 Aligned_cols=43 Identities=23% Similarity=0.548 Sum_probs=36.7
Q ss_pred ecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 356 ~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+++.++|.+.+. .++++||.||++||++|+.+.|.|+++++.+
T Consensus 2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~ 44 (101)
T cd02961 2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKEL 44 (101)
T ss_pred cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHh
Confidence 567788888775 5559999999999999999999999877765
No 112
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.13 E-value=4e-06 Score=86.74 Aligned_cols=52 Identities=17% Similarity=0.371 Sum_probs=46.0
Q ss_pred CCCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 350 ~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
..+.|..++..+|++++. +.+++|||.||||||++|+.|.|.|+++++.+..
T Consensus 344 ~~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~ 395 (462)
T TIGR01130 344 DEGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKD 395 (462)
T ss_pred CCCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhc
Confidence 345788999999999876 6789999999999999999999999998888764
No 113
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.12 E-value=3.5e-06 Score=87.19 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=43.3
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.|+.++.++|+.++. .+++++|.||||||++|+.+.|.|.++++.+..
T Consensus 2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~ 49 (462)
T TIGR01130 2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK 49 (462)
T ss_pred CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh
Confidence 578999999999875 678999999999999999999999999888764
No 114
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.12 E-value=2.8e-06 Score=72.61 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=39.6
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeC--CCCh---hhHhHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQVIDVFMQIRFQ 399 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyA--pWC~---~Ck~m~p~~ee~~~ 399 (414)
.++.|+..||+.++. ..+.+||.||| |||+ +|+.++|.|.+++.
T Consensus 2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~ 50 (116)
T cd03007 2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD 50 (116)
T ss_pred CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC
Confidence 478999999999886 78899999999 9999 99999999988654
No 115
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.10 E-value=1.6e-05 Score=83.85 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=90.0
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCc-HH-HHHHHHHHHHHhCC--c--EEEEcCChHHHHHHHHhcC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PE-TYRFFDEVEKHFGI--R--IEYMFPDAVEVQALVRSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~f-pE-T~~~v~~l~~~~gl--~--i~~~~P~~~~~~~~~~~~G 185 (414)
+++++.+|||+||+++ +++.+.+.++..+|+|.|... .+ ..+..+.+.++|+. + ++++. .......+.. .
T Consensus 178 gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~--~~~~~~~i~~-~ 254 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVD--FEPVVGEILE-K 254 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEe--cHHHHHHHHh-c
Confidence 4789999999999875 888888889999999999654 22 56777788888863 3 44442 2222111111 1
Q ss_pred CCCCCcccchhhhcchhchhHH---HHh--ccCcEEEecccccCCccCcCCCCce-ecCCCCccccCCCCCeEEEEeCcc
Q 015013 186 LFSFYEDGHQECCRVRKVRPLR---RAL--KGLRAWITGQRKDQSPGTRSEIPVV-QVDPVFEGLEGGVGSLVKWNPVAN 259 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~---ral--~~~~~~itGiRrdES~~~Ra~~~~~-e~d~~~~~~~~~~~~~~ki~PL~d 259 (414)
. ....||-+.|..-|+ ++. .|.++++||...+|-. . ..+..+ ..++. .++.-++||+.
T Consensus 255 ~------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva-s-qtl~nl~~~~~~--------~~~~v~rPLi~ 318 (482)
T PRK01269 255 V------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS-S-QTLTNLRLIDNV--------TDTLILRPLIA 318 (482)
T ss_pred C------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh-h-HHHHHHHhhhhh--------cCCceecCCcC
Confidence 1 122466566643331 111 2568999999988842 1 111111 11110 12334699999
Q ss_pred ccHHHHHHHHHhCCCC
Q 015013 260 VKGNDIWNFLRTMDVP 275 (414)
Q Consensus 260 Wt~~DVw~Yi~~~~lP 275 (414)
++++||..|.+..|++
T Consensus 319 ~dK~EIi~~a~~ig~~ 334 (482)
T PRK01269 319 MDKEDIIDLAREIGTE 334 (482)
T ss_pred CCHHHHHHHHHHhCCh
Confidence 9999999999999973
No 116
>PTZ00102 disulphide isomerase; Provisional
Probab=98.08 E-value=4.8e-06 Score=87.02 Aligned_cols=48 Identities=21% Similarity=0.525 Sum_probs=43.1
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
..+..++.++|+.++. .++.+||.||||||++|+++.|.|+++++.+.
T Consensus 32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~ 79 (477)
T PTZ00102 32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLK 79 (477)
T ss_pred CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHH
Confidence 5689999999999875 67899999999999999999999999888764
No 117
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=98.06 E-value=2.9e-05 Score=78.66 Aligned_cols=157 Identities=16% Similarity=0.124 Sum_probs=86.4
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCc---------HHHHHHHHHHHHHhCCcEEEEcCChHH----HHH
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN---------PETYRFFDEVEKHFGIRIEYMFPDAVE----VQA 179 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~f---------pET~~~v~~l~~~~gl~i~~~~P~~~~----~~~ 179 (414)
+|+|+.|||-||+|. .|+.+.+.++.-+|+.+...- ++-.+.++++++++|++++++.=.... +..
T Consensus 2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~ 81 (356)
T PF03054_consen 2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEP 81 (356)
T ss_dssp EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHH
T ss_pred eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHH
Confidence 699999999999885 888999999988888877542 355788999999999999887432221 112
Q ss_pred HHH--hcCCCCCCcccchhhhcchhchhHHHHhcc---CcEEEeccc----ccCCccCcCCCCceecCC----CCccccC
Q 015013 180 LVR--SKGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQR----KDQSPGTRSEIPVVQVDP----VFEGLEG 246 (414)
Q Consensus 180 ~~~--~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~---~~~~itGiR----rdES~~~Ra~~~~~e~d~----~~~~~~~ 246 (414)
++. .+|. .| +..-.|....|..-|.++... .+.+.||.= .++.. .+..+. ...|+ .|.-..-
T Consensus 82 f~~~Y~~G~--TP-NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~-~~~~L~-r~~D~~KDQSYfL~~l 156 (356)
T PF03054_consen 82 FLDEYRKGR--TP-NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKN-GRYRLL-RGADPKKDQSYFLSRL 156 (356)
T ss_dssp HHHHHHTT-------HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-T-TEEEEE-E-SSTTC--GGGGTT-
T ss_pred HHHHHhcCC--CC-ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccC-CceEEE-ecCCCCCCceEEEEec
Confidence 222 2342 11 122367778999988877654 578889952 22211 111110 01121 1110000
Q ss_pred CCC-CeEEEEeCccccHHHHHHHHHhCCCC
Q 015013 247 GVG-SLVKWNPVANVKGNDIWNFLRTMDVP 275 (414)
Q Consensus 247 ~~~-~~~ki~PL~dWt~~DVw~Yi~~~~lP 275 (414)
... --.-+.||-+++++||....++.+||
T Consensus 157 ~~~~L~~~~FPLG~~~K~eVR~iA~~~gl~ 186 (356)
T PF03054_consen 157 PQEQLSRLIFPLGELTKEEVREIAREAGLP 186 (356)
T ss_dssp -HHHHCCEE-TCCCS-HHHHHHHHHHCT-T
T ss_pred CHHHHHhhcCCCCCCCHHHHHHHHHhcCCc
Confidence 000 01237999999999999999999999
No 118
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.06 E-value=4.2e-06 Score=67.78 Aligned_cols=43 Identities=21% Similarity=0.503 Sum_probs=35.5
Q ss_pred CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 358 ~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+.+++.+.+. +.+++++|.||++||++|+.+.|.|+++++.+.
T Consensus 2 ~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~ 44 (101)
T TIGR01068 2 TDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYE 44 (101)
T ss_pred CHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhc
Confidence 4567777665 456799999999999999999999998876664
No 119
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=98.02 E-value=3.1e-05 Score=72.12 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=79.1
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCCCCcH------HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGRLNP------ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG~~fp------ET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+++++|||||||++ ++++.+.+.++..+++++..... ...+.++++++.+|++++++.-... ..++..
T Consensus 1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~-~e~~~~---- 75 (194)
T cd01994 1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE-EEDEVE---- 75 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC-chHHHH----
Confidence 47899999999987 48888888888877877654322 2457889999999999876631110 000000
Q ss_pred CCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHH
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW 266 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw 266 (414)
... ..+..+.+. +.++++.|-..++- +|..+..+-.. -++.-+.||..-+.+++.
T Consensus 76 --------~l~---~~l~~~~~~--g~~~vv~G~i~sd~--~~~~~e~~~~~----------~gl~~~~PLW~~~~~~ll 130 (194)
T cd01994 76 --------DLK---ELLRKLKEE--GVDAVVFGAILSEY--QRTRVERVCER----------LGLEPLAPLWGRDQEELL 130 (194)
T ss_pred --------HHH---HHHHHHHHc--CCCEEEECccccHH--HHHHHHHHHHH----------cCCEEEecccCCCHHHHH
Confidence 000 011111111 57889999988885 44433221111 146679999999888876
Q ss_pred HHHHh
Q 015013 267 NFLRT 271 (414)
Q Consensus 267 ~Yi~~ 271 (414)
.=+-.
T Consensus 131 ~e~~~ 135 (194)
T cd01994 131 REMIE 135 (194)
T ss_pred HHHHH
Confidence 54443
No 120
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.02 E-value=4e-06 Score=71.09 Aligned_cols=50 Identities=4% Similarity=-0.012 Sum_probs=42.9
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCC--ChhhHhHHHHHHHHHHHHHHhh
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQVIDVFMQIRFQIIALVM 405 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApW--C~~Ck~m~p~~ee~~~i~a~~~ 405 (414)
+.-.++..||+++++ .+..++|.|||+| ||+|+.|+|+|+++++.+...+
T Consensus 11 ~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v 62 (111)
T cd02965 11 GWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRF 62 (111)
T ss_pred CCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcE
Confidence 445688999998875 7899999999997 9999999999999888876544
No 121
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.98 E-value=7.6e-06 Score=70.10 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=24.6
Q ss_pred hhcCC-CcEEEEEeCCCChhhHhHHHHHH
Q 015013 368 LDHRQ-EPWLVVLYAPWCQFCQVIDVFMQ 395 (414)
Q Consensus 368 ~~~~~-~~vlV~FyApWC~~Ck~m~p~~e 395 (414)
..+.+ +++||.|||+||++|+.|.|.+.
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~ 37 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYL 37 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhc
Confidence 34477 99999999999999999999875
No 122
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.97 E-value=8.2e-06 Score=72.63 Aligned_cols=34 Identities=15% Similarity=0.078 Sum_probs=30.7
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHh
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALV 404 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~ 404 (414)
.+++|+|.|||+||++|+++.|.++++++.+...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~ 57 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDE 57 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999988877654
No 123
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=97.91 E-value=4.3e-05 Score=63.46 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=34.7
Q ss_pred EEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCC--cHHHHHHHHH
Q 015013 115 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDE 158 (414)
Q Consensus 115 i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~--fpET~~~v~~ 158 (414)
++|++|||+||+++ +++.+.+.++.++|+|+|.+ .++..+++++
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE 47 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence 57899999999875 88888877899999999986 3445554444
No 124
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=3.4e-05 Score=68.90 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=85.5
Q ss_pred cEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH---HHHHHhcCCCCC
Q 015013 114 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV---QALVRSKGLFSF 189 (414)
Q Consensus 114 ~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~---~~~~~~~G~~~~ 189 (414)
++++-|||||||.+. .++.+.+.++.++.++-|.+- +.++.++.++.+|++.+++.-+..-. -+++-..|.
T Consensus 2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~d--~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~--- 76 (198)
T COG2117 2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVLD--SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGY--- 76 (198)
T ss_pred ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEecccc--chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCC---
Confidence 478899999999986 677788999999999999764 56899999999999988875443322 223444554
Q ss_pred CcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHHHHH
Q 015013 190 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL 269 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~Yi 269 (414)
|.+..+ +-.-+-++-+ +.+.++.+..|.|||+-- |.+..+....-. ..-++-.++||......-|....
T Consensus 77 P~~aIq-~iH~~alE~~--A~r~~~~iaDGTRRDDrv------P~ls~~~~qSLE--dR~nv~Yi~PL~G~G~kti~~Lv 145 (198)
T COG2117 77 PRNAIQ-YIHEMALEAL--ASREVDRIADGTRRDDRV------PKLSRSEAQSLE--DRLNVQYIRPLLGLGYKTIRRLV 145 (198)
T ss_pred CchHHH-HHHHHHHHHH--HHHHHHHHcCCCcccccC------ccccHHHHhhHH--HhcCceeecccccccHHHHHHHH
Confidence 332222 2121222222 122567788999999853 222211100000 01245567777777666655543
No 125
>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6.3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....
Probab=97.88 E-value=2.7e-05 Score=75.03 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=56.1
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc-C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~-~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
..|+..+++.+ +.++|++|||-||+++ .|+.+. + .++..++++++...+++.+-++++++++|++..++
T Consensus 7 ~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i 79 (242)
T PF02540_consen 7 DFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVI 79 (242)
T ss_dssp HHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeecc
Confidence 34555555544 5799999999999886 677764 3 46889999999999999999999999999998776
No 126
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.87 E-value=6.1e-06 Score=80.13 Aligned_cols=28 Identities=29% Similarity=0.885 Sum_probs=25.9
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~ 397 (414)
+....|+|+||||||+||+++.|+|.+.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeV 68 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEV 68 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHh
Confidence 4678999999999999999999999985
No 127
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00023 Score=71.69 Aligned_cols=167 Identities=12% Similarity=0.034 Sum_probs=101.8
Q ss_pred CcEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCCC-------CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHH
Q 015013 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QAL 180 (414)
Q Consensus 113 ~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG~-------~fpET~~~v~~l~~~~gl~i~~~~P~~~~~----~~~ 180 (414)
.+|+|++|||=||.| +.|+.+.+.+|.-+|+-... ..++=++.++++++++|++++++.=....+ ..+
T Consensus 4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f 83 (356)
T COG0482 4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF 83 (356)
T ss_pred cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence 479999999999877 58889999999888887665 344556778999999999999874332221 223
Q ss_pred HHhcCCCCCCcccchhhhcchhchhHHHHhcc--CcEEEecccccCCc-cCcCCCCc-e--ecCCCCccccCCCCC-eEE
Q 015013 181 VRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSP-GTRSEIPV-V--QVDPVFEGLEGGVGS-LVK 253 (414)
Q Consensus 181 ~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~--~~~~itGiRrdES~-~~Ra~~~~-~--e~d~~~~~~~~~~~~-~~k 253 (414)
+..++.-.-|. ..-.|....|...+..++.+ .+.++||.=.-..+ ..+..+.. . ..|-.|.-....... -.-
T Consensus 84 ~~~Y~~G~TPN-Pci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~~ 162 (356)
T COG0482 84 LAEYKAGKTPN-PCILCNKEIKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQEQLERL 162 (356)
T ss_pred HHHHhCCCCCC-cchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeecCCcccccccCCCcccchhheecccCHHHHhhc
Confidence 33333211111 12356689999998887764 46788885322221 01111100 0 011111100000000 112
Q ss_pred EEeCccccHHHHHHHHHhCCCCCChhh
Q 015013 254 WNPVANVKGNDIWNFLRTMDVPINSLH 280 (414)
Q Consensus 254 i~PL~dWt~~DVw~Yi~~~~lP~npLY 280 (414)
+.||-++++.+|-...++.+||...-=
T Consensus 163 lFPlG~l~K~evR~iA~~~gL~~a~Kk 189 (356)
T COG0482 163 LFPLGDLEKLEVRPIAAEKGLPTAKKK 189 (356)
T ss_pred cccCCCCCHHHHHHHHHHcCCCccCcc
Confidence 689999999999999999999865443
No 128
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.84 E-value=1.7e-05 Score=66.38 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++++||.||++||++|+.+.|.++++.+.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~ 50 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE 50 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHh
Confidence 3689999999999999999999999987665
No 129
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=97.81 E-value=9.4e-05 Score=69.05 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred CcEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCC-CCcHHHHHHHHHHHHHh---C--CcEEEEcCChHHHHHHHHhcC
Q 015013 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHF---G--IRIEYMFPDAVEVQALVRSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG-~~fpET~~~v~~l~~~~---g--l~i~~~~P~~~~~~~~~~~~G 185 (414)
+++++.+|||.||.| ..|+.+.|-++..+|.+++ +..+.+.+.++++.+.+ + .++..+.-+...++..+....
T Consensus 4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~ 83 (197)
T PF02568_consen 4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV 83 (197)
T ss_dssp -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence 468888999999976 5888889999999999954 33334455555555443 3 344433334444433333322
Q ss_pred CCCCCcccchhhhcchhchhHHHHhc-----cCcEEEec----ccccCCccCcCCCCceecCCCCccccCCCCCeEEEEe
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITG----QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ral~-----~~~~~itG----iRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~P 256 (414)
.....|-.+|..-++.|-+ |+++++|| +|++|. ..++..++... +..-++|
T Consensus 84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQT---l~nL~~i~~~~----------~~pIlRP 143 (197)
T PF02568_consen 84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQT---LENLRVIESAS----------DLPILRP 143 (197)
T ss_dssp --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS-----HHHHHHHGGG------------S-EE-T
T ss_pred -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhh---HHHHhhhhccc----------CCceeCC
Confidence 1233466666555554432 56788877 443332 23333333211 2456899
Q ss_pred CccccHHHHHHHHHhCCC
Q 015013 257 VANVKGNDIWNFLRTMDV 274 (414)
Q Consensus 257 L~dWt~~DVw~Yi~~~~l 274 (414)
|+.++++||-+..++-|.
T Consensus 144 Lig~dK~EIi~~Ar~Igt 161 (197)
T PF02568_consen 144 LIGFDKEEIIEIARKIGT 161 (197)
T ss_dssp TTT--HHHHHHHHHHTT-
T ss_pred cCCCCHHHHHHHHHHhCc
Confidence 999999999999999987
No 130
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.80 E-value=2.2e-05 Score=66.60 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=28.0
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
..+..++|.|||+||++|+.|.|+++++++..
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~ 51 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS 51 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc
Confidence 46777999999999999999999999987654
No 131
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.78 E-value=2.3e-05 Score=70.28 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=27.5
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++..||+|||+||++|+++.|.++++.+.+
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~ 79 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQF 79 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHc
Confidence 4556799999999999999999999988776
No 132
>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]
Probab=97.78 E-value=0.00017 Score=68.15 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=98.5
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~ 192 (414)
+.+|-||||-||+. ++++.+.+..+..++.|=|.-..--+++++++++++|++.+++.-+ ...+ + .|.....+.
T Consensus 4 kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~--~~~~-~--~~saLtd~~ 78 (222)
T COG0603 4 KAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVD--LLGE-I--GGSALTDDS 78 (222)
T ss_pred eEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechh--HHhh-c--CCCcCcCCC
Confidence 57788999999986 5889988899999999999877888999999999999998876321 1111 1 111111000
Q ss_pred ----cchhhhc-c-hhchhHHHHh-----------ccCcEEEecccccCCccCcCCCCceecC--CCCccc--cCCCCCe
Q 015013 193 ----GHQECCR-V-RKVRPLRRAL-----------KGLRAWITGQRKDQSPGTRSEIPVVQVD--PVFEGL--EGGVGSL 251 (414)
Q Consensus 193 ----~~~~Cc~-~-~Kv~Pl~ral-----------~~~~~~itGiRrdES~~~Ra~~~~~e~d--~~~~~~--~~~~~~~ 251 (414)
.....-. + .-..|.+..+ .+.+.+++|+...|.. ..|-..-. ..++.. .+...++
T Consensus 79 ~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s----gYPDcrpefi~a~~~~~~l~~~~~~ 154 (222)
T COG0603 79 IDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS----GYPDCRPEFIEALNEALNLGTEKGV 154 (222)
T ss_pred ccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC----CCCCCCHHHHHHHHHHHHhhccCCc
Confidence 0000000 0 0022322211 1456889999988864 23321100 000000 0111233
Q ss_pred E-EEEeCccccHHHHHHHHHhCCCCCChhhhC
Q 015013 252 V-KWNPVANVKGNDIWNFLRTMDVPINSLHSQ 282 (414)
Q Consensus 252 ~-ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~ 282 (414)
. -..||.+++..|+|.--.+.++|++.=+.+
T Consensus 155 ~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SC 186 (222)
T COG0603 155 RIIHAPLMELTKAEIVKLADELGVPLELTWSC 186 (222)
T ss_pred cEEeCCeeeccHHHHHHHHHHhCCcchhceEE
Confidence 3 379999999999999999999998877653
No 133
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=2.1e-05 Score=80.59 Aligned_cols=48 Identities=21% Similarity=0.628 Sum_probs=43.1
Q ss_pred CeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+..++..+|+..+. ..+..+||.||||||++|+.|+|.|++++..++
T Consensus 145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~ 192 (383)
T KOG0191|consen 145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLK 192 (383)
T ss_pred ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhc
Confidence 488999999999887 788999999999999999999999999887554
No 134
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.76 E-value=3e-05 Score=67.13 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.|||+||++|+.+.|.++++++.+..
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~ 48 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE 48 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999998887754
No 135
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.74 E-value=4.8e-05 Score=62.23 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=29.6
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+.+++|+|.||++||+.|+.+.|.++++.+.+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~ 43 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFD 43 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhC
Confidence 588899999999999999999999998776664
No 136
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.73 E-value=3.6e-05 Score=66.25 Aligned_cols=33 Identities=12% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.|||+||++|+.+.|.+.++++.+..
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~ 49 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE 49 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh
Confidence 568999999999999999999999998887753
No 137
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.67 E-value=5.8e-05 Score=61.10 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=27.7
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+++++|.|||+||++|+...|.+.++.+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~ 31 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYK 31 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999888875
No 138
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.66 E-value=7.7e-05 Score=58.38 Aligned_cols=37 Identities=27% Similarity=0.610 Sum_probs=30.6
Q ss_pred chHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHH
Q 015013 361 GMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 361 ~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i 400 (414)
+|++.+. ..+++||.||++||++|+.+.+.++++.+.
T Consensus 2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~ 38 (93)
T cd02947 2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE 38 (93)
T ss_pred chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH
Confidence 4555554 448999999999999999999999987665
No 139
>PTZ00323 NAD+ synthase; Provisional
Probab=97.64 E-value=0.00094 Score=66.13 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=83.5
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CC-C---eEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCC--hHHHHHHHHh
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GR-P---FRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPD--AVEVQALVRS 183 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~-~---i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~~P~--~~~~~~~~~~ 183 (414)
++++|++|||-||+++ .|+.+. +. + ..++.+..... -+++.+-+.++++.+|++++++.-+ ...+...+..
T Consensus 47 ~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~ 126 (294)
T PTZ00323 47 KGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEK 126 (294)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhh
Confidence 5699999999999876 666664 32 2 34555555533 6789999999999999988766322 1112222211
Q ss_pred c-CCCC--CCcccchhhhcchhchhHHHHh--ccCcEEEecc-cccCCccCcCCCCceecCCCCccccCCCCCeEEEEeC
Q 015013 184 K-GLFS--FYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 257 (414)
Q Consensus 184 ~-G~~~--~~~~~~~~Cc~~~Kv~Pl~ral--~~~~~~itGi-RrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL 257 (414)
. |... +.....+...+..-..-+.... .+....+.|. .++|-. . .+.....- .+..-++||
T Consensus 127 ~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~G-----------Dg~~d~~pi 193 (294)
T PTZ00323 127 AVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAG-----------DGVVDVQLI 193 (294)
T ss_pred hhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcC-----------CCCcCchhh
Confidence 0 1000 0000001111110011122222 1445788888 777731 0 12111111 134568999
Q ss_pred ccccHHHHHHHHHhCCCC
Q 015013 258 ANVKGNDIWNFLRTMDVP 275 (414)
Q Consensus 258 ~dWt~~DVw~Yi~~~~lP 275 (414)
+++++.||....+..++|
T Consensus 194 a~L~K~eVr~LAr~l~lp 211 (294)
T PTZ00323 194 SDLHKSEVFLVARELGVP 211 (294)
T ss_pred cCCcHHHHHHHHHHcCCC
Confidence 999999999999988765
No 140
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.60 E-value=1.4e-05 Score=83.59 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=42.6
Q ss_pred CCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+++|+.|+.++|...+. ...+..||+||+.|||+|++++|.|+++++-+
T Consensus 38 ~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl 86 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDL 86 (606)
T ss_pred CCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHH
Confidence 37899999999999886 45578999999999999999999999965544
No 141
>PHA02125 thioredoxin-like protein
Probab=97.60 E-value=5.5e-05 Score=59.25 Aligned_cols=22 Identities=18% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|||+||++|+.+.|.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7899999999999999999864
No 142
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=97.59 E-value=0.00028 Score=66.91 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=76.4
Q ss_pred EEEechHHHHHHH-HHHHhcCCCe-EEEEEeCCC----C-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCC
Q 015013 116 AIAFSGAEDVALI-EYAHLTGRPF-RVFSLDTGR----L-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFS 188 (414)
Q Consensus 116 ~vafSGGKDSvlL-~L~~~~~~~i-~VvflDTG~----~-fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~ 188 (414)
+++|||||||+++ +++.+.+.++ .++++++.. . ...-.+.++.+++.+|++++++.-.. ...
T Consensus 1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~-----------~~~ 69 (218)
T TIGR03679 1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSG-----------EKE 69 (218)
T ss_pred CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCC-----------CCh
Confidence 3689999999874 8888877776 456666431 1 11234778999999999987653110 000
Q ss_pred CCcccchhhhcchhchhHHHHh-ccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHHHHH
Q 015013 189 FYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 267 (414)
Q Consensus 189 ~~~~~~~~Cc~~~Kv~Pl~ral-~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~DVw~ 267 (414)
.+ ... + ..-+.++. .+.+.+++|.-.++- .|.....+.. ..++.-+.||..++.+++..
T Consensus 70 ~~--~~~----l--~~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~v~~----------~~gl~~~~PLw~~~~~el~~ 129 (218)
T TIGR03679 70 KE--VED----L--KGALKELKREGVEGIVTGAIASRY--QKSRIERICE----------ELGLKVFAPLWGRDQEEYLR 129 (218)
T ss_pred HH--HHH----H--HHHHHHHHHcCCCEEEECCcccHh--HHHHHHHHHH----------hCCCeEEeehhcCCHHHHHH
Confidence 00 000 0 01111221 167889999887764 2333322211 12566799999999999988
Q ss_pred HHHhCCC
Q 015013 268 FLRTMDV 274 (414)
Q Consensus 268 Yi~~~~l 274 (414)
-+...|+
T Consensus 130 ~~~~~G~ 136 (218)
T TIGR03679 130 ELVERGF 136 (218)
T ss_pred HHHHCCC
Confidence 7665544
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.57 E-value=3.7e-05 Score=60.55 Aligned_cols=27 Identities=15% Similarity=0.381 Sum_probs=23.7
Q ss_pred EEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.|+|||+||++|+.+.|.++++++.++
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcC
Confidence 378999999999999999999777654
No 144
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.54 E-value=8.7e-05 Score=68.33 Aligned_cols=29 Identities=21% Similarity=0.607 Sum_probs=26.3
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~ 399 (414)
.++++||+|||+||++|+.+.|.+.++.+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~ 95 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA 95 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 67899999999999999999999988754
No 145
>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.0011 Score=65.05 Aligned_cols=160 Identities=11% Similarity=0.071 Sum_probs=95.1
Q ss_pred CcEEEEechHHHHHH-HHHHHhcCCCeEEEEEeC-------C--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----
Q 015013 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDT-------G--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---- 178 (414)
Q Consensus 113 ~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDT-------G--~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~---- 178 (414)
++++|+.|||-||.+ .+|++..+.++.-||+-. | .-...-.+.+++++++++++++.+.-..+.|.
T Consensus 6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs 85 (377)
T KOG2805|consen 6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFS 85 (377)
T ss_pred ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHH
Confidence 569999999999877 589999999988777631 2 12334567889999999999987754443222
Q ss_pred HHHHhc--CCCCCCcccchhhhcchhchhHHHHhc---cCcEEEecccccCCccCcCC-CCce--ecCC----CCccccC
Q 015013 179 ALVRSK--GLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSE-IPVV--QVDP----VFEGLEG 246 (414)
Q Consensus 179 ~~~~~~--G~~~~~~~~~~~Cc~~~Kv~Pl~ral~---~~~~~itGiRrdES~~~Ra~-~~~~--e~d~----~~~~~~~ 246 (414)
.+++.+ |. -+.. .--|....|...+.+... +++.+.||.=+--+.+.-.+ ...+ ..|. .|.-..-
T Consensus 86 ~~L~~Y~~G~--TPNP-DI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~~~~~~~~~~l~~~~d~~KDQt~FL~~i 162 (377)
T KOG2805|consen 86 PFLEEYENGR--TPNP-DILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVLEDEDNAESHLLISKDMVKDQTYFLSTI 162 (377)
T ss_pred HHHHHHhcCC--CCCC-CccccceeeccHHHHHHHHhcCCCeEEeeeeeeeecCcccCcceeEeecccccCCceeEeecc
Confidence 223333 32 1221 226888888885555443 56777888643222100000 0000 1111 0000000
Q ss_pred CCCC-eEEEEeCccccHHHHHHHHHhCCCC
Q 015013 247 GVGS-LVKWNPVANVKGNDIWNFLRTMDVP 275 (414)
Q Consensus 247 ~~~~-~~ki~PL~dWt~~DVw~Yi~~~~lP 275 (414)
.... .-...||-+|++.+|....+..|+|
T Consensus 163 n~~~L~r~lfPlg~~~K~eVk~lA~~~gf~ 192 (377)
T KOG2805|consen 163 NQTQLKRLLFPLGCLTKSEVKKLAKQAGFP 192 (377)
T ss_pred cHHHHHhhhccCcccCHHHHHHHHHhcCCc
Confidence 0000 0125799999999999999999999
No 146
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.53 E-value=9.6e-05 Score=63.17 Aligned_cols=31 Identities=19% Similarity=0.509 Sum_probs=27.9
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++++||.|||+||++|+.+.|.++++.+..
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~ 54 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG 54 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999987654
No 147
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=97.50 E-value=0.00061 Score=65.68 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=67.3
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH----hcC
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR----SKG 185 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~----~~G 185 (414)
+.+|.+.+|||.||.++ .++.+... ++..++++.+....+-.++++.+++++|++.+++......+.+... ...
T Consensus 15 ~~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (269)
T cd01991 15 DVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWELD 94 (269)
T ss_pred CCceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHHHHHHHHHHHhC
Confidence 45799999999999875 67776543 3777888777543334789999999999988877655443332221 111
Q ss_pred CCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCc
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 226 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~ 226 (414)
.+ ...|... -..-+.+..+ +.++.++|.-.||-.
T Consensus 95 ~p------~~~~~~~-~~~~l~~~a~~~~~~v~l~G~g~Delf 130 (269)
T cd01991 95 EP------FADSSAI-PLYLLSRLARKHGIKVVLSGEGADELF 130 (269)
T ss_pred CC------CCCcHHH-HHHHHHHHHHHhCCEEEEecCCccccc
Confidence 11 1112211 1222333332 347999999999954
No 148
>PRK00876 nadE NAD synthetase; Reviewed
Probab=97.49 E-value=0.0033 Score=63.14 Aligned_cols=70 Identities=16% Similarity=0.252 Sum_probs=54.1
Q ss_pred HHHHHHHHH-cC-CcEEEEechHHHHHHH-HHHHhc-C-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 102 EIMDRALEK-FG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 102 eil~~a~~~-~~-~~i~vafSGGKDSvlL-~L~~~~-~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
+.|+..++. .+ ++++|++|||.||+++ .|+.+. + .++..++++++..-++..++++.+++++|++.+++.
T Consensus 21 ~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~ 95 (326)
T PRK00876 21 AAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVED 95 (326)
T ss_pred HHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEE
Confidence 455555555 33 4799999999999875 777664 4 357778888886668889999999999999987663
No 149
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.46 E-value=8.9e-05 Score=58.95 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=24.8
Q ss_pred hhhcCCCcEEEEEeCCCChhhHhHHHHH
Q 015013 367 RLDHRQEPWLVVLYAPWCQFCQVIDVFM 394 (414)
Q Consensus 367 ~~~~~~~~vlV~FyApWC~~Ck~m~p~~ 394 (414)
.....++++||.|+|+||++|+.|+..+
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~ 39 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREV 39 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHH
Confidence 3456899999999999999999998877
No 150
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.39 E-value=0.00017 Score=61.06 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=27.7
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++++||.||++||++|+.+.|.+.++.+.+
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~ 49 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADY 49 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhC
Confidence 4589999999999999999999999877663
No 151
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=97.39 E-value=0.00012 Score=77.70 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=29.1
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+++|||+|||+||++|+.+.|.++++.+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k 86 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAK 86 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 77899999999999999999999999877653
No 152
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.39 E-value=0.00018 Score=65.43 Aligned_cols=29 Identities=21% Similarity=0.605 Sum_probs=26.4
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~ 399 (414)
.++++||.||++||++|+.+.|.++++.+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~ 90 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAK 90 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHH
Confidence 57899999999999999999999988755
No 153
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.37 E-value=0.00016 Score=62.06 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=29.6
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.||++||++|+...|.++++.+.++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~ 53 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYK 53 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999988886
No 154
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00013 Score=74.72 Aligned_cols=47 Identities=23% Similarity=0.542 Sum_probs=37.1
Q ss_pred EecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 355 ~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
..++..++..... ..+++++|+||||||++|+.+.|.|++++.++..
T Consensus 32 ~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~ 78 (383)
T KOG0191|consen 32 SELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG 78 (383)
T ss_pred hhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC
Confidence 3344444544443 5889999999999999999999999988887766
No 155
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.35 E-value=0.00018 Score=62.35 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=22.6
Q ss_pred hhcCCCcEEEEEeCCCChhhHhHHH
Q 015013 368 LDHRQEPWLVVLYAPWCQFCQVIDV 392 (414)
Q Consensus 368 ~~~~~~~vlV~FyApWC~~Ck~m~p 392 (414)
+...+++|||+|+|+||++|+.|++
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEH 35 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHH
Confidence 3468999999999999999999986
No 156
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.32 E-value=0.00014 Score=71.32 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.|||+||++|+.+.|+++++++.++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg 196 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG 196 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC
Confidence 57899999999999999999999999888775
No 157
>PRK05370 argininosuccinate synthase; Validated
Probab=97.31 E-value=0.0025 Score=65.86 Aligned_cols=151 Identities=18% Similarity=0.233 Sum_probs=87.2
Q ss_pred CCcEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCC
Q 015013 112 GNDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSF 189 (414)
Q Consensus 112 ~~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~~~~~~~G~~~~ 189 (414)
+++|+++||||=|+.+ +..+++.+.+|..|++|+|-.-.|=++.+++-+..+|. +++++.-....+++++..---..+
T Consensus 11 ~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~aI~anA~ 90 (447)
T PRK05370 11 GQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIAAIQCGAF 90 (447)
T ss_pred CCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHHHHHcCCc
Confidence 4689999999999755 56666667789999999995212446777888888997 576664333333333210000111
Q ss_pred Cc---ccchh-hhcchhchhHH-----HHhc--cCcEEEeccc---ccCCccCcCCCCceecCCCCccccCCCCCeEEEE
Q 015013 190 YE---DGHQE-CCRVRKVRPLR-----RALK--GLRAWITGQR---KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN 255 (414)
Q Consensus 190 ~~---~~~~~-Cc~~~Kv~Pl~-----ral~--~~~~~itGiR---rdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~ 255 (414)
|. .+..+ .+.+- +|+. ++.+ +.+++.-|-. .|| -|..+.+.-.+| .+.-+.
T Consensus 91 Y~~~~e~~Y~l~t~La--Rplia~~lv~~A~~~ga~aIAHG~TGKGNDQ---vRFE~~~~aL~P----------~l~Via 155 (447)
T PRK05370 91 HISTGGVTYFNTTPLG--RAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI---ERFYRYGLLTNP----------ELKIYK 155 (447)
T ss_pred cccccCccccCCCcch--HHHHHHHHHHHHHHhCCcEEEEcCCCCCCch---HHHHHHHHHhCC----------CCeEec
Confidence 10 00000 00000 1221 1111 4456665532 233 355444333343 345689
Q ss_pred eCccc-------cHHHHHHHHHhCCCCCC
Q 015013 256 PVANV-------KGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 256 PL~dW-------t~~DVw~Yi~~~~lP~n 277 (414)
|.-+| +.+|--+|+++||||+.
T Consensus 156 PwRd~~~~~~f~sR~e~i~Ya~~hGIpv~ 184 (447)
T PRK05370 156 PWLDQDFIDELGGRAEMSEFLIAHGFDYK 184 (447)
T ss_pred chhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence 99888 78999999999999985
No 158
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.25 E-value=0.00019 Score=77.37 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=32.0
Q ss_pred CccchHHHHhh-hcCCCcEEEEEeCCCChhhHhHHHHH---HHHHHHH
Q 015013 358 NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQVIDVFM---QIRFQII 401 (414)
Q Consensus 358 ~~~~~e~~v~~-~~~~~~vlV~FyApWC~~Ck~m~p~~---ee~~~i~ 401 (414)
+.+++++.++. ...+++|+|+|||+||++|+.|++.. ++..+.+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l 506 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL 506 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh
Confidence 45666665542 34578999999999999999999874 4444444
No 159
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.23 E-value=0.00019 Score=66.10 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=24.6
Q ss_pred EEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
||.|||+||++|++..|.++++++.+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g 99 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG 99 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC
Confidence 777999999999999999999888863
No 160
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.22 E-value=0.0004 Score=60.62 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.8
Q ss_pred hhcCCCcEEEEEeCCCChhhHhHHHHH
Q 015013 368 LDHRQEPWLVVLYAPWCQFCQVIDVFM 394 (414)
Q Consensus 368 ~~~~~~~vlV~FyApWC~~Ck~m~p~~ 394 (414)
+...+++++|.|+++||++|+.|...+
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 356899999999999999999998764
No 161
>PRK02628 nadE NAD synthetase; Reviewed
Probab=97.21 E-value=0.0038 Score=68.80 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=83.3
Q ss_pred CCcEEEEechHHHHHH-HHHHHhc----C---CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 015013 112 GNDIAIAFSGAEDVAL-IEYAHLT----G---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183 (414)
Q Consensus 112 ~~~i~vafSGGKDSvl-L~L~~~~----~---~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~ 183 (414)
.++++|+.|||+||++ +.++.+. + .++..+++-+-...++|++.++++++.+|++++++. ....+......
T Consensus 361 ~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~-I~~~~~~~~~~ 439 (679)
T PRK02628 361 LKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAREID-IRPAALQMLKD 439 (679)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEE-cHHHHHHHHHH
Confidence 3679999999999986 4555543 3 457777883223456899999999999999987662 22222222222
Q ss_pred cCCCCCCcccchhh-------hcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCcee-cCCCCccccCCCCCeEE
Q 015013 184 KGLFSFYEDGHQEC-------CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-VDPVFEGLEGGVGSLVK 253 (414)
Q Consensus 184 ~G~~~~~~~~~~~C-------c~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e-~d~~~~~~~~~~~~~~k 253 (414)
.+.+ +. .+...| |...+..-|..... +..++-|| .++|.. .. .-... -| +---
T Consensus 440 l~~~-~~-~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~--~G-y~T~~~GD-----------~~~~ 502 (679)
T PRK02628 440 IGHP-FA-RGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA--LG-WCTYGVGD-----------HMSH 502 (679)
T ss_pred hccc-cc-cCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH--hC-ceecCCCC-----------cccc
Confidence 1111 10 000112 44444444444433 33456677 344442 11 11110 11 1234
Q ss_pred EEeCccccHHHHHHHHHhCC
Q 015013 254 WNPVANVKGNDIWNFLRTMD 273 (414)
Q Consensus 254 i~PL~dWt~~DVw~Yi~~~~ 273 (414)
++||.+..+.+|+..++..+
T Consensus 503 ~~~~~~l~Kt~v~~l~~~~~ 522 (679)
T PRK02628 503 YNVNASVPKTLIQHLIRWVI 522 (679)
T ss_pred cccccCCcHHHHHHHHHHHH
Confidence 89999999999999888764
No 162
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.19 E-value=0.00035 Score=56.82 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.3
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.||++||++|+...+.+.++.+.++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~ 49 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYK 49 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhC
Confidence 47899999999999999999999999877663
No 163
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.15 E-value=0.00053 Score=57.07 Aligned_cols=30 Identities=23% Similarity=0.643 Sum_probs=24.6
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~ 399 (414)
..++++|+.|++|||++|+.+.+.+.+..+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~ 32 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDND 32 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999887554
No 164
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.15 E-value=0.00042 Score=64.05 Aligned_cols=30 Identities=20% Similarity=0.386 Sum_probs=26.7
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i 400 (414)
.+++++|.|||+||++|+.+.|.+.++.+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~ 102 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARA 102 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHh
Confidence 578999999999999999999999886543
No 165
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.13 E-value=0.00065 Score=59.36 Aligned_cols=32 Identities=19% Similarity=0.458 Sum_probs=29.0
Q ss_pred CCCcEEEEEeCC-CChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAP-WCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyAp-WC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.||+. |||+|+...|.+.++.+.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~ 59 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYK 59 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhc
Confidence 678999999999 99999999999999877764
No 166
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.12 E-value=0.00047 Score=53.93 Aligned_cols=28 Identities=11% Similarity=0.337 Sum_probs=24.2
Q ss_pred EEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 375 WLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 375 vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.|..||++||++|+.+.|.++++++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~ 29 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMG 29 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhc
Confidence 3678999999999999999999876653
No 167
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.08 E-value=0.00054 Score=64.02 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=29.4
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+++|||.|||+||++|+...|.++++.+.++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~ 69 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFN 69 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999988875
No 168
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.05 E-value=0.00059 Score=54.73 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=29.1
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.+++++.||++||++|+.+.|.+.+..+.+..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~ 63 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG 63 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC
Confidence 78999999999999999999999998887753
No 169
>PRK13981 NAD synthetase; Provisional
Probab=97.03 E-value=0.0099 Score=63.74 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=54.8
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc-CC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~-~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
..|+..+++.+ ++++|++|||-||+++ .|+.+. ++ ++..+++.+....+++++-++++++.+|++.+++
T Consensus 269 ~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i 341 (540)
T PRK13981 269 LGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDII 341 (540)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 44555555554 5799999999999875 777664 53 5888899888888899999999999999987765
No 170
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.03 E-value=0.00062 Score=60.42 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=28.1
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+++|||.|||+||+ |+...|.++++.+.+.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~ 51 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYK 51 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhc
Confidence 568999999999999 9999999999888874
No 171
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.02 E-value=0.0012 Score=59.35 Aligned_cols=32 Identities=13% Similarity=0.431 Sum_probs=29.0
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+++++|.||++||++|+...+.|.++.+.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~ 91 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK 91 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999999999888775
No 172
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.99 E-value=0.00063 Score=51.47 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=22.3
Q ss_pred EEEEeCCCChhhHhHHHHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~~~i 400 (414)
++.|+++||++|+.+++.++++++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~ 27 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL 27 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh
Confidence 6789999999999999999987654
No 173
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.98 E-value=0.0008 Score=59.72 Aligned_cols=33 Identities=24% Similarity=0.121 Sum_probs=29.5
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.|||+||++|+...|.++++++.+..
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~ 53 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP 53 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh
Confidence 568899999999999999999999999888863
No 174
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.97 E-value=0.00062 Score=55.68 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=28.4
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++++++.|+++||++|+.+.|.|+++++.+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~ 42 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK 42 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC
Confidence 6899999999999999999999999877764
No 175
>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]
Probab=96.92 E-value=0.0036 Score=60.82 Aligned_cols=172 Identities=19% Similarity=0.265 Sum_probs=97.0
Q ss_pred HHHHHHHHcC-CcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 015013 103 IMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ 178 (414)
Q Consensus 103 il~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~~P~~~~~~ 178 (414)
.++.+-++-+ +++.++.|||-||.+. -|+++ ++.++..+|+|||.+ -.|..+..+-+.+++|+++.++........
T Consensus 11 ~i~~ir~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~ 90 (315)
T COG0519 11 AIEEIREQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDRFLS 90 (315)
T ss_pred HHHHHHHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHHHHH
Confidence 3444444445 6789999999999876 56666 688899999999965 446667778888889999988743322111
Q ss_pred HHHHhcCCCCCCcccchhhhcchh------chhHHHHhccC--cEEEeccccc---CCc-cCcCCCCceecCCCCccccC
Q 015013 179 ALVRSKGLFSFYEDGHQECCRVRK------VRPLRRALKGL--RAWITGQRKD---QSP-GTRSEIPVVQVDPVFEGLEG 246 (414)
Q Consensus 179 ~~~~~~G~~~~~~~~~~~Cc~~~K------v~Pl~ral~~~--~~~itGiRrd---ES~-~~Ra~~~~~e~d~~~~~~~~ 246 (414)
.-+|.. ++. ..|| ++-+.+..+.+ +..+-|.=.- ||. +.-..+.. .-.-+|..
T Consensus 91 ---~L~Gvt-----DPE---~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKS---HHNVGGLP- 155 (315)
T COG0519 91 ---ALKGVT-----DPE---EKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKS---HHNVGGLP- 155 (315)
T ss_pred ---HhcCCC-----CHH---HHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCcccc---ccccCCCc-
Confidence 222331 111 1122 12222222211 1122221111 110 00011110 00000000
Q ss_pred CCCCeEEEEeCccccHHHHHHHHHhCCCCCChhhhCCCCCCCC
Q 015013 247 GVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 289 (414)
Q Consensus 247 ~~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npLYd~Gy~SiGC 289 (414)
..-++--+-||-+.=+++|-..-+..|||..-+|.+-|+--|=
T Consensus 156 ~~m~lkLvEPLr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPGL 198 (315)
T COG0519 156 EDMKLKLVEPLRELFKDEVRELGRELGLPEEIVYRHPFPGPGL 198 (315)
T ss_pred cccceeeeHHHHHHhHHHHHHHHHHhCCCHHHhccCCCCCCCe
Confidence 0012334689999999999999999999999999888876553
No 176
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=96.87 E-value=0.0011 Score=63.72 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||+|||+||++|+...|.++++.+.+..
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~ 130 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT 130 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999888853
No 177
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.85 E-value=0.00087 Score=77.17 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=29.9
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+++|||+|||+||++|+.+.|.++++.+.+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~ 450 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYK 450 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcC
Confidence 57899999999999999999999999998875
No 178
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=96.82 E-value=0.0021 Score=65.80 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=76.4
Q ss_pred EEEechHHHHHH-HHHHHhcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHH----HhcCCCC
Q 015013 116 AIAFSGAEDVAL-IEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALV----RSKGLFS 188 (414)
Q Consensus 116 ~vafSGGKDSvl-L~L~~~~~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~~~P~~~~~~~~~----~~~G~~~ 188 (414)
+++||||=|+.+ +.++++.+ .++..+++|+|.. .+-.+-+++-+.++|. +++++.-.....++++ ... .
T Consensus 1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~an---A 76 (388)
T PF00764_consen 1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKAN---A 76 (388)
T ss_dssp EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT----
T ss_pred CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHH---H
Confidence 589999999765 56666654 7899999999983 3566778888889997 8877743333222221 111 1
Q ss_pred CCcccchhhhc------chhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccc--
Q 015013 189 FYEDGHQECCR------VRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV-- 260 (414)
Q Consensus 189 ~~~~~~~~Cc~------~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dW-- 260 (414)
+++.....++. ..|+..+.+. .+.+++.-|-..-....-|..+.+...+| .+.-+.|.-+|
T Consensus 77 ~Yeg~YpL~tsl~RplIa~~~v~~A~~-~ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~ 145 (388)
T PF00764_consen 77 LYEGRYPLSTSLARPLIAKKLVEVARE-EGADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEF 145 (388)
T ss_dssp -BTTTB--CCCCHHHHHHHHHHHHHHH-HT-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHH
T ss_pred HhCCCccccccchHHHHHHHHHHHHHH-cCCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhh
Confidence 12211111111 1111111111 14466665532211111354444433454 34568999877
Q ss_pred cHHHHHHHHHhCCCCCChhhhCCC
Q 015013 261 KGNDIWNFLRTMDVPINSLHSQGY 284 (414)
Q Consensus 261 t~~DVw~Yi~~~~lP~npLYd~Gy 284 (414)
+.+|-.+|+++||||+..--+.-|
T Consensus 146 ~R~~~i~ya~~~gIpv~~~~~~~y 169 (388)
T PF00764_consen 146 SREEEIEYAKKHGIPVPVTKKKPY 169 (388)
T ss_dssp HHHHHHHHHHHTT----SS---SS
T ss_pred hHHHHHHHHHHcCCCCCCCCCCCC
Confidence 789999999999999865544434
No 179
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=96.81 E-value=0.011 Score=55.73 Aligned_cols=120 Identities=21% Similarity=0.308 Sum_probs=68.9
Q ss_pred HHHHHHHHH---cCCcEEEEechHHHHHHH-HHHHh-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 102 EIMDRALEK---FGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 102 eil~~a~~~---~~~~i~vafSGGKDSvlL-~L~~~-~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
+.++.+++. -+.+|.+.+|||-||.++ .++.+ .+.++..++++.+.....=..+++++++++|++++.+......
T Consensus 4 ~~l~~av~~rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~~ 83 (255)
T PF00733_consen 4 ELLEEAVARRLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPED 83 (255)
T ss_dssp HHHHHHHHHHCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HHH
T ss_pred HHHHHHHHHHHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechhh
Confidence 455555554 246799999999999875 77777 6788999999998777655678999999999998766555443
Q ss_pred H----HHHHHhcCCCCCCcccchhhhcchhchhHHHHh--ccCcEEEecccccCCc
Q 015013 177 V----QALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 226 (414)
Q Consensus 177 ~----~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral--~~~~~~itGiRrdES~ 226 (414)
+ ...+...+.+... ..+.... ..-+.+.. .+.+++++|.-.||-.
T Consensus 84 ~~~~~~~~~~~~~~p~~~----~~~~~~~-~~~~~~~a~~~~~~~~ltG~GgDelf 134 (255)
T PF00733_consen 84 LLDNLEDIIWRLDGPSPL----DDPNSLP-LYLLARLARENGIRVLLTGQGGDELF 134 (255)
T ss_dssp HHHHHHHHHHHHT---HH----HHHHHHH-HHHHHHHHCHTTBSEEE--TTHHHHH
T ss_pred HHHhHHHHHHHHhCCccc----ccccccH-HHHHHHhhcccceeEEEecccccccc
Confidence 2 2222222211100 0111111 11122333 3678999999888764
No 180
>PRK00768 nadE NAD synthetase; Reviewed
Probab=96.76 E-value=0.012 Score=57.46 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=45.6
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc----C-----CCeEEEEEeCCCCcHHHHHHHHHHHHHhCC-cEEE
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT----G-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEY 169 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~----~-----~~i~VvflDTG~~fpET~~~v~~l~~~~gl-~i~~ 169 (414)
+.|+..+++.+ ..++|+.|||.||++. .|+.+. + +.+.++.+=.-...+++.+..+.+++.+|+ +..+
T Consensus 27 ~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~ 106 (268)
T PRK00768 27 DFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLT 106 (268)
T ss_pred HHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEE
Confidence 34444455544 5699999999999875 555542 2 223444444444557778899999999998 6654
Q ss_pred E
Q 015013 170 M 170 (414)
Q Consensus 170 ~ 170 (414)
+
T Consensus 107 i 107 (268)
T PRK00768 107 V 107 (268)
T ss_pred E
Confidence 4
No 181
>PLN02412 probable glutathione peroxidase
Probab=96.75 E-value=0.0016 Score=58.98 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.|||+||++|+...|.|+++.+.+..
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~ 60 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE 60 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999888863
No 182
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.68 E-value=0.0019 Score=60.88 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=28.0
Q ss_pred cCccchHHHHhhhcCCCcE-EEEEeCCCChhhHhHHHHHHHHHHH
Q 015013 357 LNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 357 l~~~~~e~~v~~~~~~~~v-lV~FyApWC~~Ck~m~p~~ee~~~i 400 (414)
++.+..+.+.. .++++ ++.|||+||++|+.+.|.+++++..
T Consensus 120 L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~ 161 (215)
T TIGR02187 120 LSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALA 161 (215)
T ss_pred CCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 34444444333 44554 4459999999999999998886654
No 183
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=96.58 E-value=0.01 Score=56.56 Aligned_cols=122 Identities=15% Similarity=0.165 Sum_probs=70.5
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCe-EEEEEeC-C--CC-c-HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPF-RVFSLDT-G--RL-N-PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i-~VvflDT-G--~~-f-pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+++++|||||||++ |+.+.+. .++ .++++-+ + .. | .-..++++..++.+|+++..+...
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~------------- 67 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTE------------- 67 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecC-------------
Confidence 46789999999987 5666665 443 3333321 1 11 1 113478889999999998653111
Q ss_pred CCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHH
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 264 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~D 264 (414)
|.....++.|.++++ +.+++++|--..+. +|.....+-- .-++.-+.||..-+.++
T Consensus 68 ----------~~~e~~~e~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~v~~----------~lgl~~~~PLW~~~~~~ 125 (223)
T TIGR00290 68 ----------GTEEDEVEELKGILHTLDVEAVVFGAIYSEY--QKTRIERVCR----------ELGLKSFAPLWHRDPEK 125 (223)
T ss_pred ----------CCccHHHHHHHHHHHHcCCCEEEECCcccHH--HHHHHHHHHH----------hcCCEEeccccCCCHHH
Confidence 011224455666654 45788899766654 2332221110 12466789999888777
Q ss_pred HHHHHHh
Q 015013 265 IWNFLRT 271 (414)
Q Consensus 265 Vw~Yi~~ 271 (414)
+..=+..
T Consensus 126 ll~e~i~ 132 (223)
T TIGR00290 126 LMEEFVE 132 (223)
T ss_pred HHHHHHH
Confidence 6554333
No 184
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=96.47 E-value=0.036 Score=56.29 Aligned_cols=147 Identities=20% Similarity=0.326 Sum_probs=86.8
Q ss_pred CcEEEEechHHHH-HHHHHHHh-cCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHHH----HhcC
Q 015013 113 NDIAIAFSGAEDV-ALIEYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALV----RSKG 185 (414)
Q Consensus 113 ~~i~vafSGGKDS-vlL~L~~~-~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~-i~~~~P~~~~~~~~~----~~~G 185 (414)
.+|++|||||=|. +++.++.+ .+-++..+++|.|.. .+=++.+++=+..+|.. ..++--....+.+++ ...+
T Consensus 5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana 83 (403)
T COG0137 5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA 83 (403)
T ss_pred cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence 5799999999995 55655554 558889999999986 78889999999999974 555422222222222 1111
Q ss_pred CCCCCcccchhhhcchhchhHHHHh---------c--cCcEEEec---ccccCCccCcCCCCceecCCCCccccCCCCCe
Q 015013 186 LFSFYEDGHQECCRVRKVRPLRRAL---------K--GLRAWITG---QRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251 (414)
Q Consensus 186 ~~~~~~~~~~~Cc~~~Kv~Pl~ral---------~--~~~~~itG---iRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~ 251 (414)
+ ++.. ..=.-+|.|.| + |.++|.-| ---|| -|..+...-.+| .+
T Consensus 84 ~---Yeg~------YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ---vRFe~~~~al~p----------~l 141 (403)
T COG0137 84 L---YEGV------YPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ---VRFELAILALNP----------DL 141 (403)
T ss_pred e---eecc------ccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCCce---eeeeeehhhhCC----------Cc
Confidence 1 1110 01111122211 1 44566644 33333 244433332333 45
Q ss_pred EEEEeCcc--ccHHHHHHHHHhCCCCCChhhhC
Q 015013 252 VKWNPVAN--VKGNDIWNFLRTMDVPINSLHSQ 282 (414)
Q Consensus 252 ~ki~PL~d--Wt~~DVw~Yi~~~~lP~npLYd~ 282 (414)
--+.|.-+ |+.++--+|.++||+|+.---++
T Consensus 142 kiiAP~Rew~~~R~~~i~Ya~~~gipv~~~~~k 174 (403)
T COG0137 142 KIIAPWREWNLTREEEIEYAEEHGIPVKATKEK 174 (403)
T ss_pred EEEeehhhhccChHHHHHHHHHcCCCccccCCC
Confidence 56788754 58999999999999998654333
No 185
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=96.37 E-value=0.013 Score=46.63 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=41.9
Q ss_pred EEEEechHHHHHHH-HHHHhc---CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 115 IAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 115 i~vafSGGKDSvlL-~L~~~~---~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
|++++|||.||.++ +++.+. +..+.++++| ..++.+.+..+++|.+..+.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~ 54 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIIL 54 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEE
Confidence 46899999999864 777776 7788888888 88889999999999987665
No 186
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.23 E-value=0.0039 Score=58.74 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=26.7
Q ss_pred CCCcEEEEEeC---CCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYA---PWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyA---pWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+...++.|++ +||++|+.|.|.++++++.+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~ 52 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP 52 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC
Confidence 34556777888 999999999999999988774
No 187
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=96.19 E-value=0.038 Score=58.12 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=65.7
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcCC--CeEEEEEeCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHH
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTGR--PFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVR 182 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~~--~i~VvflDTG--~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~----~~~~~ 182 (414)
+.++.+.+|||.||.++ .++.+... ++..+.++.+ ..+.| ..+++++++++|++.+.+......+ .+.+.
T Consensus 253 ~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~ 331 (467)
T TIGR01536 253 DVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIY 331 (467)
T ss_pred CCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHH
Confidence 35688999999999876 67766543 6888888776 34555 4589999999999887665443322 22222
Q ss_pred hcCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCc
Q 015013 183 SKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 226 (414)
Q Consensus 183 ~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~ 226 (414)
..+.+ + ..|. ..-..-+.+..+ |.++.++|.-.||-.
T Consensus 332 ~~~~p-~-----~~~~-~~~~~~l~~~a~~~G~~vlltG~GaDElf 370 (467)
T TIGR01536 332 HLEDP-T-----TIRA-SIPLYLLSKLAREDGVKVVLSGEGADELF 370 (467)
T ss_pred hhCCC-C-----CCch-HHHHHHHHHHHHhcCCEEEEecCcchhcc
Confidence 22211 0 0111 111223333333 468999999988864
No 188
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.17 E-value=0.0039 Score=57.64 Aligned_cols=28 Identities=7% Similarity=-0.148 Sum_probs=26.2
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
.++.+||+|||.||++|+.-.|.++++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHH
Confidence 6899999999999999999999999873
No 189
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=96.10 E-value=0.04 Score=56.36 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=88.8
Q ss_pred CcEEEEechHHHHHH-HHHHHhcCCCeEEEEEe-CCCCcHHHHHHHHHHH-HHh---CCcEEEEcCChHHHHHHHHhcCC
Q 015013 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLD-TGRLNPETYRFFDEVE-KHF---GIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 113 ~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflD-TG~~fpET~~~v~~l~-~~~---gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
+++++-.|||-||-| ..|+.+-|-.+..+|.+ .++.-+++.+-+..+. .++ +.++..+.-....+++.+.....
T Consensus 176 Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~~ 255 (383)
T COG0301 176 GKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKVP 255 (383)
T ss_pred CcEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhcC
Confidence 367778999999976 48888888888777774 5566777776666666 444 33444332234444444443321
Q ss_pred CCCCcccchhhhcchhchhHHHHhc-----cCcEEEecccccCCc-cCcCCCCceecCCCCccccCCCCCeEEEEeCccc
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 260 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~-----~~~~~itGiRrdES~-~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dW 260 (414)
..+-|-++|..-++.|-+ |..+++||-.-.|=. .+=.++..+ +.. -+..-++||+.|
T Consensus 256 -------~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVASQTl~nL~~i--~~~--------t~~pIlRPLI~~ 318 (383)
T COG0301 256 -------ESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVASQTLENLRVI--DSV--------TNTPVLRPLIGL 318 (383)
T ss_pred -------ccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhhHhHHHHHHHH--Hhc--------cCCceeccccCC
Confidence 223355566555554432 557899986655531 011222222 111 135568999999
Q ss_pred cHHHHHHHHHhCCC
Q 015013 261 KGNDIWNFLRTMDV 274 (414)
Q Consensus 261 t~~DVw~Yi~~~~l 274 (414)
+++||-+.-++-|.
T Consensus 319 DK~eIi~~Ar~IgT 332 (383)
T COG0301 319 DKEEIIEIARRIGT 332 (383)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999998775
No 190
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=96.07 E-value=0.03 Score=52.56 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=78.3
Q ss_pred CcEEEEechHHHHHHH-HHHHhcCCCeEEEEEeCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF 189 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~~~~i~VvflDTG--~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~ 189 (414)
.+++||+|||-||+.. -+++..+ +.+|.| ...++..+-.+++++.+|....++.-+...++.-.- .|.+.
T Consensus 61 ~kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~i~kGal-nGRfh- 133 (255)
T COG1365 61 PKIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLEDIEKGAL-NGRFH- 133 (255)
T ss_pred ceEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHHHHhhhc-cCCCC-
Confidence 3699999999999876 4555555 556665 566788999999999999766554322222221110 12211
Q ss_pred CcccchhhhcchhchhHHHHhc--cCcEEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEe--CccccHHHH
Q 015013 190 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP--VANVKGNDI 265 (414)
Q Consensus 190 ~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~P--L~dWt~~DV 265 (414)
..-.|..+..-.-+ +..+ +.+++++|---.-+ ...+..+ .+++++|= ++--|..|+
T Consensus 134 ---pCGRCh~~I~~~V~-~k~re~di~~vafGDlLs~G------~~svy~e----------D~i~rlnlPAflAltK~El 193 (255)
T COG1365 134 ---PCGRCHSMIENAVM-DKARELDIDVVAFGDLLSTG------YGSVYRE----------DGIFRLNLPAFLALTKDEL 193 (255)
T ss_pred ---CcchHHHHHHHHHH-HHHHhcCCeEEEEccccccc------ccceecc----------CCEEEEccHHHHhhCcHHH
Confidence 11234443332333 3333 44688888432221 1111111 24666653 345689999
Q ss_pred HHHHHhCCCCC
Q 015013 266 WNFLRTMDVPI 276 (414)
Q Consensus 266 w~Yi~~~~lP~ 276 (414)
-..+..+++..
T Consensus 194 r~il~~~~~e~ 204 (255)
T COG1365 194 RSILKWNGYEL 204 (255)
T ss_pred HHHHHhcCccc
Confidence 99999888744
No 191
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.97 E-value=0.0086 Score=51.74 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCCcEEEEEeCCCChh-hHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQF-CQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~-Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.||++||++ |....+.+.++.+.+..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH
Confidence 5689999999999998 99999999998877754
No 192
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.93 E-value=0.0091 Score=54.84 Aligned_cols=33 Identities=12% Similarity=-0.002 Sum_probs=27.0
Q ss_pred CCCcE-EEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPW-LVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~v-lV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.+++| |+.|||+|||+|+...|.++++.+.+..
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~ 72 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS 72 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh
Confidence 45654 5567999999999999999999888853
No 193
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.012 Score=50.29 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=32.4
Q ss_pred cchHHHHhhhcCCCcEEEEEeC--------CCChhhHhHHHHHHHHHHH
Q 015013 360 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQVIDVFMQIRFQI 400 (414)
Q Consensus 360 ~~~e~~v~~~~~~~~vlV~FyA--------pWC~~Ck~m~p~~ee~~~i 400 (414)
+.|++.++...+++.++|.|++ +|||.|.+.+|++.++++.
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ 61 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKH 61 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHh
Confidence 4566666655455669999996 6999999999999998883
No 194
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.86 E-value=0.0076 Score=46.31 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|+++||++|+.+.+.+++.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5789999999999999999875
No 195
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.007 Score=56.82 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=39.2
Q ss_pred CCeEec-CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 352 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 352 ~~v~~l-~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+.+..+ +.+.+++.+. .++...|||.|||.|.+.|+.+.|+|.|+...+-
T Consensus 124 e~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn 174 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYN 174 (265)
T ss_pred hheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhC
Confidence 455666 3444444443 6888899999999999999999999999988773
No 196
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.85 E-value=0.015 Score=48.89 Aligned_cols=32 Identities=19% Similarity=0.568 Sum_probs=29.3
Q ss_pred CCCcEEEEEeCC-CChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAP-WCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyAp-WC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.||+. ||++|+.-.+.++++.+.+.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~ 56 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYK 56 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhc
Confidence 458999999999 99999999999999988876
No 197
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.84 E-value=0.01 Score=53.50 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.||++||+.|....+.+.++.+.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~ 55 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYG 55 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999888775
No 198
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.76 E-value=0.007 Score=47.41 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=20.6
Q ss_pred EEEEeCCCChhhHhHHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
|+.|+++|||+|+.+.+.++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC
Confidence 47899999999999999999864
No 199
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.59 E-value=0.0071 Score=54.21 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=29.0
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++.|.+.|.|-|||+|+.|-|.+.+.++.+..
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~ 64 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD 64 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHh
Confidence 569999999999999999999999888777643
No 200
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=95.53 E-value=0.032 Score=53.10 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=35.7
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCeE-EEEEeCC---C--CcHHHHHHHHHHHHHhCCcEEEE
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPFR-VFSLDTG---R--LNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i~-VvflDTG---~--~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
++++++||||||++ ++.+.+. .++. ++..-.. . .+-...+.++..++.+|++++.+
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~ 64 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKL 64 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEE
Confidence 47889999999987 5666554 4433 2222221 1 11123478889999999998654
No 201
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.53 E-value=0.0084 Score=63.74 Aligned_cols=34 Identities=18% Similarity=0.583 Sum_probs=26.9
Q ss_pred chHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHH
Q 015013 361 GMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQ 395 (414)
Q Consensus 361 ~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~e 395 (414)
.+++.+. +++++||+|+|||+||-.||.+++..-
T Consensus 464 ~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tf 497 (569)
T COG4232 464 ELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTF 497 (569)
T ss_pred HHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhcc
Confidence 5666665 345579999999999999999987643
No 202
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=95.50 E-value=0.021 Score=49.47 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.9
Q ss_pred CCcEEEEE-eCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEPWLVVL-YAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~vlV~F-yApWC~~Ck~m~p~~ee~~~i~a 402 (414)
+++++|.| ++.||++|+...|.+.++.+.+.
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~ 54 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELD 54 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHH
Confidence 34555555 59999999999999999888774
No 203
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=95.48 E-value=0.014 Score=53.86 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=27.6
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.|||.||++|++ .|.++++.+.+..
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~ 55 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWAD 55 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhh
Confidence 5689999999999999975 6789999888863
No 204
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=95.28 E-value=0.023 Score=49.49 Aligned_cols=30 Identities=10% Similarity=0.346 Sum_probs=26.6
Q ss_pred CcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 373 EPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 373 ~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++++|.|| ++||+.|....|.++++.+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~ 59 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFE 59 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Confidence 78888887 9999999999999999888775
No 205
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.21 E-value=0.017 Score=43.39 Aligned_cols=21 Identities=24% Similarity=0.741 Sum_probs=18.8
Q ss_pred EEEEeCCCChhhHhHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee 396 (414)
+..|+++||++|+.+.+.|++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~ 22 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS 22 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH
Confidence 467999999999999999886
No 206
>COG0171 NadE NAD synthase [Coenzyme metabolism]
Probab=95.14 E-value=0.22 Score=48.77 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=84.7
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHhc-CC-----CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE--c
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-----PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM--F 171 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~~-~~-----~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~--~ 171 (414)
+.|+.-+++.+ +.+++..|||-||++. .|+.+. ++ ++..+.+..+..-+.+++-+..+.+.+|+....+ .
T Consensus 14 ~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~ 93 (268)
T COG0171 14 DFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIK 93 (268)
T ss_pred HHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecH
Confidence 34444444444 5699999999999874 666664 31 2666666666436677888899999999985433 2
Q ss_pred CChHHH-HHHHHhc-CC--CCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCccCcCCCCceecCCCCccccCC
Q 015013 172 PDAVEV-QALVRSK-GL--FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGG 247 (414)
Q Consensus 172 P~~~~~-~~~~~~~-G~--~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~ 247 (414)
|....+ ....... +. ..+... .-.-+.|.+. +-.+.......+.|. ++++... ..+-..|+
T Consensus 94 ~~v~~~~~~~~~~~~~~~~~~~~~~--NikaR~Rm~~-lY~~An~~~~lVlGT------gn~sE~~-~Gy~TkyG----- 158 (268)
T COG0171 94 PAVDAFLKKLLKLFLGIYLEDLALG--NIKARLRMVI-LYAIANKLGGLVLGT------GNKSELA-LGYFTKYG----- 158 (268)
T ss_pred HHHHHHHHhhhhhhcccchhhHHHh--hhhHHHHHHH-HHHHHhhcCCEEEcC------CcHHHHh-cCceeccc-----
Confidence 222211 1101111 10 000000 0111122111 111222334445453 1333221 11111111
Q ss_pred CCCeEEEEeCccccHHHHHHHHHhCCCCCChh
Q 015013 248 VGSLVKWNPVANVKGNDIWNFLRTMDVPINSL 279 (414)
Q Consensus 248 ~~~~~ki~PL~dWt~~DVw~Yi~~~~lP~npL 279 (414)
.+-.-++||.+..+.+|+..++..++|-+-+
T Consensus 159 -Dg~~d~~Pi~~L~KtqV~~La~~l~ipe~I~ 189 (268)
T COG0171 159 -DGAVDINPIADLYKTQVYALARHLGIPEEIL 189 (268)
T ss_pred -CcccChhhhcCCcHHHHHHHHHHcCCCHHHh
Confidence 1234589999999999999999777765444
No 207
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.12 E-value=0.021 Score=51.60 Aligned_cols=31 Identities=3% Similarity=0.021 Sum_probs=27.4
Q ss_pred CCCcEEEEEeCCC-ChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPW-CQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApW-C~~Ck~m~p~~ee~~~i~ 401 (414)
.++++||.||+.| |++|....|.|+++++.+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~ 74 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL 74 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc
Confidence 4679999999999 999999999999877665
No 208
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.09 E-value=0.026 Score=52.08 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=28.9
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.|| +.||+.|..-.|.|.++.+.+.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~ 62 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELK 62 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHH
Confidence 4678999999 9999999999999999888875
No 209
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.09 E-value=0.026 Score=51.12 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=29.6
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++.+||.|| +.||++|....+.|+++.+.++.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~ 61 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK 61 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4589999999 89999999999999999888864
No 210
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.05 E-value=0.023 Score=49.32 Aligned_cols=31 Identities=3% Similarity=0.074 Sum_probs=26.9
Q ss_pred CCCcEEEEEeCCC-ChhhHhHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPW-CQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 371 ~~~~vlV~FyApW-C~~Ck~m~p~~ee~~~i~ 401 (414)
.++++||.||+.| |++|+...|.|+++.+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~ 56 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL 56 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc
Confidence 4679999999999 699999999999887664
No 211
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.87 E-value=0.033 Score=47.87 Aligned_cols=32 Identities=9% Similarity=0.110 Sum_probs=28.7
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.|| +.||+.|....|.+.++.+.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~ 53 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFA 53 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence 5789999999 7899999999999999988873
No 212
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.84 E-value=0.039 Score=47.45 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=28.1
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.|| +.||+.|....+.+.++.+.+.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~ 54 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFK 54 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Confidence 4689999999 6999999999999999888775
No 213
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=94.69 E-value=0.034 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.003 Sum_probs=22.4
Q ss_pred hhhcCCCcEEEEEeCCCChhhHhHHH
Q 015013 367 RLDHRQEPWLVVLYAPWCQFCQVIDV 392 (414)
Q Consensus 367 ~~~~~~~~vlV~FyApWC~~Ck~m~p 392 (414)
...+.+++++|.|+++||++|+.|..
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~ 37 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNR 37 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHH
Confidence 33567899999999999999999865
No 214
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.47 E-value=0.0073 Score=57.27 Aligned_cols=42 Identities=19% Similarity=0.508 Sum_probs=36.5
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHH
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
..++.++++|+..++. .-|++.|+|||||.|+...|.++..+
T Consensus 24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a 65 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFA 65 (248)
T ss_pred ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccC
Confidence 3788899999988654 77999999999999999999998743
No 215
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.45 E-value=0.045 Score=44.45 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=24.8
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+..-+..|+++||++|..+.+.++++++..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~ 41 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN 41 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC
Confidence 344577899999999999999999877654
No 216
>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]
Probab=94.31 E-value=0.02 Score=56.86 Aligned_cols=156 Identities=15% Similarity=0.222 Sum_probs=93.1
Q ss_pred CCcEEEEechHHHHHHH-HHHHh----c--CCCeEEEEEeCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChH----HHH
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHL----T--GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAV----EVQ 178 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~----~--~~~i~VvflDTG~~--fpET~~~v~~l~~~~gl~i~~~~P~~~----~~~ 178 (414)
|.++.+.-||||||+++ |.... . +....++.+|.|.- -...+.-+++...+|++++.++.+..- ...
T Consensus 51 ge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd 130 (347)
T KOG2840|consen 51 GERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMD 130 (347)
T ss_pred CCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHH
Confidence 35689999999999987 43333 2 34566778888743 345667788889999999998866432 122
Q ss_pred HHHHhcCCCCCCcccchhh---hcchhchhHHHHhcc--CcEEEecccccCCccCcCCCCceecC----CCCccc--cCC
Q 015013 179 ALVRSKGLFSFYEDGHQEC---CRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVD----PVFEGL--EGG 247 (414)
Q Consensus 179 ~~~~~~G~~~~~~~~~~~C---c~~~Kv~Pl~ral~~--~~~~itGiRrdES~~~Ra~~~~~e~d----~~~~~~--~~~ 247 (414)
+.+..-|.. .+.| |.+.|.+-|.+.-.- ..-..||...|+-. .+--+..++-| ++-... ...
T Consensus 131 ~i~~~i~~~------~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~ 203 (347)
T KOG2840|consen 131 EIVSEIGQE------IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSL 203 (347)
T ss_pred HHHHHHhhh------hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCcc
Confidence 333333321 2333 566666666655442 33457888888764 33222222211 111110 000
Q ss_pred CC-CeEEEEeCccccHHHHHHHHHhCCC
Q 015013 248 VG-SLVKWNPVANVKGNDIWNFLRTMDV 274 (414)
Q Consensus 248 ~~-~~~ki~PL~dWt~~DVw~Yi~~~~l 274 (414)
.. .+.+.+||-+=+..+|--|-..+.+
T Consensus 204 e~~~~~r~kplk~~~~keivLya~~~~L 231 (347)
T KOG2840|consen 204 EMGIIPRLKPLKYASEKEIVLYASLSKL 231 (347)
T ss_pred ccCccccccccccchhhehhhHHHHHHH
Confidence 12 3678899999899998887766633
No 217
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=94.11 E-value=0.16 Score=48.06 Aligned_cols=126 Identities=13% Similarity=0.211 Sum_probs=78.8
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCeE-EEEEe--CC--CCc-HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPFR-VFSLD--TG--RLN-PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL 186 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i~-VvflD--TG--~~f-pET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~ 186 (414)
++++.+||||||+. +|.+.+.+.++. ++.+- .+ +.| -.-.++++.+++-.|+++.......
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~n~~~~~~~Ae~~gi~l~~~~~~g------------ 69 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTPNLELAELQAEAMGIPLVTFDTSG------------ 69 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeeccchHHHHHHHHhcCCceEEEecCc------------
Confidence 46778999999986 688888876653 22222 22 112 1245778888888899877653322
Q ss_pred CCCCcccchhhhcchhchhHHHHhccCc--EEEecccccCCccCcCCCCceecCCCCccccCCCCCeEEEEeCccccHHH
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 264 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~--~~itGiRrdES~~~Ra~~~~~e~d~~~~~~~~~~~~~~ki~PL~dWt~~D 264 (414)
..-+.++.|..+|++.+ ++++|-=..+- ++..+..+-. .-++.-+.||..-+.++
T Consensus 70 -----------~~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc~----------~lGl~~~~PLWg~d~~e 126 (223)
T COG2102 70 -----------EEEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLCE----------ELGLKVYAPLWGRDPEE 126 (223)
T ss_pred -----------cchhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHHH----------HhCCEEeecccCCCHHH
Confidence 22345677777887664 78888433332 2222221110 02567799999999999
Q ss_pred HHHHHHhCCC
Q 015013 265 IWNFLRTMDV 274 (414)
Q Consensus 265 Vw~Yi~~~~l 274 (414)
+-.-+.+.|+
T Consensus 127 ll~e~~~~Gf 136 (223)
T COG2102 127 LLEEMVEAGF 136 (223)
T ss_pred HHHHHHHcCC
Confidence 8888777764
No 218
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=94.08 E-value=0.049 Score=51.75 Aligned_cols=56 Identities=13% Similarity=0.222 Sum_probs=32.5
Q ss_pred cEEEEechHHHHHH-HHHHHhcCCCeE-EEEEe-CC-C--CcHH-HHHHHHHHHHHhCCcEEEE
Q 015013 114 DIAIAFSGAEDVAL-IEYAHLTGRPFR-VFSLD-TG-R--LNPE-TYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 114 ~i~vafSGGKDSvl-L~L~~~~~~~i~-VvflD-TG-~--~fpE-T~~~v~~l~~~~gl~i~~~ 170 (414)
+++++|||||||++ |+.+.+. .++. ++++. .+ . -|.- ..++++..++.+|+++..+
T Consensus 2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~ 64 (218)
T PF01902_consen 2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEI 64 (218)
T ss_dssp EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEE
Confidence 57889999999987 5766666 5443 33332 22 1 1222 2578888999999998754
No 219
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.04 E-value=0.045 Score=38.40 Aligned_cols=22 Identities=45% Similarity=1.124 Sum_probs=20.1
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
|+.||++||++|+.+.+.+.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH
Confidence 5789999999999999999976
No 220
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.74 E-value=0.11 Score=44.63 Aligned_cols=40 Identities=18% Similarity=0.522 Sum_probs=29.5
Q ss_pred hHHHHhh-hcCCCcEEEEEeC-------CCChhhHhHHHHHHHHHHHH
Q 015013 362 MENLARL-DHRQEPWLVVLYA-------PWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 362 ~e~~v~~-~~~~~~vlV~FyA-------pWC~~Ck~m~p~~ee~~~i~ 401 (414)
|.++++. .+.+++++|.|++ +|||.|.+.+|++++++...
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~ 55 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA 55 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC
Confidence 4444442 3466899999995 49999999999999988763
No 221
>smart00594 UAS UAS domain.
Probab=93.61 E-value=0.091 Score=44.93 Aligned_cols=27 Identities=11% Similarity=0.012 Sum_probs=22.4
Q ss_pred HhhhcCCCcEEEEEeCCCChhhHhHHH
Q 015013 366 ARLDHRQEPWLVVLYAPWCQFCQVIDV 392 (414)
Q Consensus 366 v~~~~~~~~vlV~FyApWC~~Ck~m~p 392 (414)
....+..|+++|.|+++||+.|+.|..
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r 47 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNR 47 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHH
Confidence 334567889999999999999999864
No 222
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=93.37 E-value=0.075 Score=41.38 Aligned_cols=22 Identities=18% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|+++|||+|+.+...++++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHc
Confidence 5789999999999999999875
No 223
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=92.89 E-value=0.15 Score=44.96 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCCcEEEEEeCC-CChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAP-WCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyAp-WC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++++||.||+. ||+.|....+.+.++.+.++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~ 62 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK 62 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH
Confidence 467899999976 688899999999988887753
No 224
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=92.76 E-value=0.12 Score=38.68 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=19.1
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|+++||++|+.+...+++.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~ 23 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER 23 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC
Confidence 5789999999999999888763
No 225
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=92.70 E-value=0.51 Score=48.92 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHHHcC-CcEEEEechHHHHHHH-HHHHh-cC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 102 EIMDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 102 eil~~a~~~~~-~~i~vafSGGKDSvlL-~L~~~-~~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
+-|+|+.+..| .+++++.|||-||+|+ .|+++ ++ ..+..+++|-|..--.--+-+++.-..+|++|.++..
T Consensus 219 e~I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~a 293 (552)
T KOG1622|consen 219 ECINEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDA 293 (552)
T ss_pred HHHHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeec
Confidence 45566666666 5799999999999987 44444 56 4589999999976443334444444459999988753
No 226
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.64 E-value=0.17 Score=44.06 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=27.0
Q ss_pred ecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 356 ~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++++..+.+.. .....-++.|..+|||.|+..-|+|.++++.-
T Consensus 27 ~l~~~~~~~l~~--~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~ 70 (129)
T PF14595_consen 27 QLSEEQIEKLKS--IQKPYNILVITETWCGDCARNVPVLAKIAEAN 70 (129)
T ss_dssp H--HHHHHHHHT----S-EEEEEE--TT-HHHHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHh--cCCCcEEEEEECCCchhHHHHHHHHHHHHHhC
Confidence 355555554443 34556788899999999999999999977753
No 227
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=92.33 E-value=0.73 Score=49.63 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=42.2
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcCCCeE--EEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEE
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTGRPFR--VFSLDTGRL-NPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~~~i~--VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~ 170 (414)
..++++.+|||-||.++ .++.+..+... .|.++++.. ++| .++.+++++.+|.+.+.+
T Consensus 230 dvpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D-~~~a~~~A~~lg~~h~~~ 291 (542)
T COG0367 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPD-AKYARAVAKFLGTPHHEI 291 (542)
T ss_pred CCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCch-HHHHHHHHHHhCCCcEEE
Confidence 45688889999999886 67777543322 277777766 455 478999999999976544
No 228
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=91.89 E-value=0.2 Score=46.38 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++++||.|| +.||+.|..-.+.|.++.+.+.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~ 62 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQ 62 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHH
Confidence 4578999999 9999999999999999888774
No 229
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.86 E-value=0.17 Score=37.52 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.4
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|+++||++|+.+.+.|++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 5679999999999999998865
No 230
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=91.52 E-value=1.9 Score=46.91 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=64.2
Q ss_pred CCcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCC----CcHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHHH
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR----LNPETYRFFDEVEKHFGIRIEYMFPDAVE----VQALV 181 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~----~fpET~~~v~~l~~~~gl~i~~~~P~~~~----~~~~~ 181 (414)
+.+|.+..|||-||.++ .++.+. ..++..|.+.... .+.|+ +|++++++++|.+.+.+.....+ +.+.+
T Consensus 260 d~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v 338 (589)
T TIGR03104 260 DVPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAV 338 (589)
T ss_pred CCceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHH
Confidence 35688899999999876 566654 3456666654321 35564 78999999999987665544332 23334
Q ss_pred HhcCCCCCCcccchhhhcchhchhHHHHh-ccCcEEEecccccCCc
Q 015013 182 RSKGLFSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP 226 (414)
Q Consensus 182 ~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral-~~~~~~itGiRrdES~ 226 (414)
...+.|... .. +-.. .-+.++. ++.+++++|.-.||-.
T Consensus 339 ~~~~~P~~~--~~--~~~~---~~l~~~a~~~~kV~LsGeGaDElF 377 (589)
T TIGR03104 339 AAMSEPMVS--HD--CVAF---YLLSEEVSKHVKVVQSGQGADEVF 377 (589)
T ss_pred HHhCCCCCC--ch--HHHH---HHHHHHHhCCCeEEeecCchHhcc
Confidence 433332211 11 1000 1133333 4578999999999976
No 231
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=91.21 E-value=1.2 Score=48.72 Aligned_cols=107 Identities=15% Similarity=0.078 Sum_probs=61.2
Q ss_pred CcEEEEechHHHHHHH-HHHHhc-CCCeEEEEEeCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChHHH---HHHHHhcCC
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAVEV---QALVRSKGL 186 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~-~~~i~VvflDTG~-~fpET~~~v~~l~~~~gl~i~~~~P~~~~~---~~~~~~~G~ 186 (414)
.+|.+..|||-||.++ .++.+. ..++..+.+.... .+.| ..+++.+++++|.+.+++......+ ...+...+.
T Consensus 259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE-~~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~ 337 (628)
T TIGR03108 259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDE-SAYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE 337 (628)
T ss_pred CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCCh-HHHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence 4688889999999875 555553 4457666665432 3445 3789999999999876554333322 222222222
Q ss_pred CCCCcccchhhhcchhchhHHHHhccCcEEEecccccCCc
Q 015013 187 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSP 226 (414)
Q Consensus 187 ~~~~~~~~~~Cc~~~Kv~Pl~ral~~~~~~itGiRrdES~ 226 (414)
|. . +...+. ...-.+.+-++.+++++|.-.||=.
T Consensus 338 P~-~-~~~~~~----~~~~~~~a~~~~kV~LsG~GgDElf 371 (628)
T TIGR03108 338 PF-A-DSSALP----TYRVCELARKRVTVALSGDGGDELF 371 (628)
T ss_pred CC-C-CchHHH----HHHHHHHHHCCCCEEEeccchhhcc
Confidence 21 1 111111 0111122334678999999998875
No 232
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=90.84 E-value=0.18 Score=45.71 Aligned_cols=27 Identities=19% Similarity=0.744 Sum_probs=19.1
Q ss_pred HhhhcCCCcEEEEEeCCCChhhHhHHH
Q 015013 366 ARLDHRQEPWLVVLYAPWCQFCQVIDV 392 (414)
Q Consensus 366 v~~~~~~~~vlV~FyApWC~~Ck~m~p 392 (414)
......+++++|.++++||..|+.|+.
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~ 57 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMER 57 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHH
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcc
Confidence 334568999999999999999999874
No 233
>PRK15000 peroxidase; Provisional
Probab=90.04 E-value=0.38 Score=44.93 Aligned_cols=32 Identities=6% Similarity=0.226 Sum_probs=28.5
Q ss_pred CCCcEEEEEeC-CCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYA-PWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~FyA-pWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++.+||.||+ .||+.|..-.+.|.++.+.+.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~ 65 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQ 65 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999 599999999999999988885
No 234
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=89.34 E-value=0.39 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=21.6
Q ss_pred EEEEEeCCCChhhHhHHHHHHHHHH
Q 015013 375 WLVVLYAPWCQFCQVIDVFMQIRFQ 399 (414)
Q Consensus 375 vlV~FyApWC~~Ck~m~p~~ee~~~ 399 (414)
-|+.|+.+||++|+.....++++..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~ 26 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSE 26 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcc
Confidence 3678999999999999999998543
No 235
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=89.04 E-value=3 Score=45.42 Aligned_cols=108 Identities=13% Similarity=0.193 Sum_probs=60.2
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcC------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH--
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTG------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-- 176 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~------------~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~-- 176 (414)
..++.+.+|||-||.++ .++.+.. .++.-|.+... ..|| ..+++++++++|.+.+.+.....+
T Consensus 237 dvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~~~~e~~ 314 (586)
T PTZ00077 237 DVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTFTVEEGI 314 (586)
T ss_pred CCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEECHHHHH
Confidence 34688999999999876 6666642 34555554332 2455 578999999999977555333222
Q ss_pred --HHHHHHhcCCCCCCcccchhhhcchhchhHHHHhc--cCcEEEecccccCCc
Q 015013 177 --VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP 226 (414)
Q Consensus 177 --~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral~--~~~~~itGiRrdES~ 226 (414)
+.+.+.....+... ..+.... ..-+.+.++ +.+++++|.-.||-.
T Consensus 315 ~~l~~~i~~le~~~~~--~~~~~~p---~yll~r~a~~~gvkVvLsGeGaDElF 363 (586)
T PTZ00077 315 DALPDVIYHTETYDVT--TIRASTP---MYLLSRRIKALGIKMVLSGEGSDELF 363 (586)
T ss_pred HHHHHHHHHhcCCCCC--CcchHHH---HHHHHHHHHhcCCeEEEecCchhhhc
Confidence 22222222221100 0010000 112333333 468999999988864
No 236
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=88.86 E-value=0.53 Score=34.61 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=18.5
Q ss_pred EEEEeCCCChhhHhHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee 396 (414)
++.|..+||++|+.....|++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~ 21 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE 21 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHHH
Confidence 578999999999999988875
No 237
>PRK13190 putative peroxiredoxin; Provisional
Probab=88.70 E-value=0.5 Score=44.10 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=25.1
Q ss_pred CCcEE-EEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEPWL-VVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~vl-V~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++.+| +.|++.||+.|..-.+.|.++.+.+.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~ 58 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFK 58 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 45454 46899999999999999998877775
No 238
>PHA03050 glutaredoxin; Provisional
Probab=88.55 E-value=0.44 Score=40.17 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
|+.|..+|||+|+.....|++.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 6789999999999999988874
No 239
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.26 E-value=0.47 Score=37.95 Aligned_cols=22 Identities=18% Similarity=0.464 Sum_probs=19.8
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
|+.|..+|||+|++....++++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~ 23 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKL 23 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHh
Confidence 6789999999999999998876
No 240
>PF13728 TraF: F plasmid transfer operon protein
Probab=88.14 E-value=0.48 Score=44.84 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=32.0
Q ss_pred hHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 362 MENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 362 ~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
-+..++.. .++.-|+.||.+.|++|+.+.|++...++.++.
T Consensus 111 ~~~~l~~l-a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~ 151 (215)
T PF13728_consen 111 RDKALKQL-AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF 151 (215)
T ss_pred HHHHHHHH-hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC
Confidence 33444423 467789999999999999999999998877754
No 241
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.08 E-value=0.51 Score=44.01 Aligned_cols=29 Identities=10% Similarity=-0.099 Sum_probs=25.4
Q ss_pred cEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 374 PWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 374 ~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.+|+.|++.||+.|....+.|.++.+.+.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~ 56 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFK 56 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHH
Confidence 45668999999999999999999988875
No 242
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=88.05 E-value=0.62 Score=45.47 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCcEEEEEe-CCCChhhHhHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLY-APWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 371 ~~~~vlV~Fy-ApWC~~Ck~m~p~~ee~~~i~a 402 (414)
.++.+|+.|| +.||+.|..-.+.|.++.+.+.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~ 129 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFE 129 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHH
Confidence 3467777787 9999999999999999988885
No 243
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=87.62 E-value=3 Score=45.11 Aligned_cols=108 Identities=16% Similarity=0.243 Sum_probs=62.1
Q ss_pred CCcEEEEechHHHHHHH-HHHHhcC--------------CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 112 GNDIAIAFSGAEDVALI-EYAHLTG--------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL-~L~~~~~--------------~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
+.++.+.+|||-||.++ .++.+.. +++..|.+.... .|| ..+++++++++|.+.+.+.....+
T Consensus 227 dvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e 304 (554)
T PRK09431 227 DVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQE 304 (554)
T ss_pred CCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHH
Confidence 35688999999999876 6666642 246666665433 555 478999999999987655443322
Q ss_pred ----HHHHHHhcCCCCCCcccchhhhcchhchhHHHHh--ccCcEEEecccccCCc
Q 015013 177 ----VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP 226 (414)
Q Consensus 177 ----~~~~~~~~G~~~~~~~~~~~Cc~~~Kv~Pl~ral--~~~~~~itGiRrdES~ 226 (414)
+.+.+.....+.+. .. +....+ .-+.+.. .+.+++++|.-.||=.
T Consensus 305 ~~~~l~~vi~~le~~dp~-~~-~~~~p~---yll~~~~~~~gvkvvLsGeGaDElF 355 (554)
T PRK09431 305 GLDALRDVIYHLETYDVT-TI-RASTPM---YLMARKIKAMGIKMVLSGEGADELF 355 (554)
T ss_pred HHHHHHHHHHHHhccCCc-cc-hhHHHH---HHHHHHHHHcCCEEEEecCchhhhh
Confidence 22222221110000 00 100000 1123332 4678999999998865
No 244
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=86.87 E-value=0.63 Score=38.43 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=19.1
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|..||||+|++++..|.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 6679999999999999988764
No 245
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=86.35 E-value=2.6 Score=45.85 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=38.0
Q ss_pred CcEEEEechHHHHHHH-HHHHhc----C------CCeEEEEEeCCCC-cHHHHHHHHHHHHHhCCcEEEE
Q 015013 113 NDIAIAFSGAEDVALI-EYAHLT----G------RPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 113 ~~i~vafSGGKDSvlL-~L~~~~----~------~~i~VvflDTG~~-fpET~~~v~~l~~~~gl~i~~~ 170 (414)
.++.+.+|||-||.++ .++.+. . +++..|. .|.. .|| ..+.+++++++|.+.+.+
T Consensus 226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev 292 (578)
T PLN02549 226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEF 292 (578)
T ss_pred CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEE
Confidence 4688999999999876 666653 1 2344443 4443 444 568999999999876554
No 246
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=86.17 E-value=0.89 Score=35.58 Aligned_cols=25 Identities=24% Similarity=0.483 Sum_probs=20.7
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee 396 (414)
.+.-|+.|..+||++|++....|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE 30 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH
Confidence 3445778999999999999988875
No 247
>PRK13599 putative peroxiredoxin; Provisional
Probab=86.02 E-value=0.78 Score=43.40 Aligned_cols=31 Identities=13% Similarity=-0.039 Sum_probs=26.3
Q ss_pred CCc-EEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEP-WLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~-vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++. ||+.|++.|||.|..-.+.|.++.+.+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~ 59 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFK 59 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence 444 5789999999999999999999888875
No 248
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=85.07 E-value=2.1 Score=44.61 Aligned_cols=77 Identities=18% Similarity=0.279 Sum_probs=43.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHc--CCcEEEEechHHHHHHH-HHHHhcCC-CeEEEEEeCCCCcHHHH-----------
Q 015013 89 EQFAKELENASPLEIMDRALEKF--GNDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETY----------- 153 (414)
Q Consensus 89 ~~l~~~l~~~~a~eil~~a~~~~--~~~i~vafSGGKDSvlL-~L~~~~~~-~i~VvflDTG~~fpET~----------- 153 (414)
+.++.+-....+ .+...++..- ..+|+|-||||-||+++ +|++.+-+ +-++--+++-...||++
T Consensus 226 ds~k~rvl~i~~-rl~~~i~~~c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~~~~~PDRktg 304 (520)
T KOG0573|consen 226 DSLKDRVLVIPP-RLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSKEQNVPDRKTG 304 (520)
T ss_pred HHHhhhhhccCh-hHhhhccccccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCcccccCCccHHHH
Confidence 344555445554 2223322221 24699999999999887 78888533 22333344444444433
Q ss_pred -HHHHHHHHHhCCc
Q 015013 154 -RFFDEVEKHFGIR 166 (414)
Q Consensus 154 -~~v~~l~~~~gl~ 166 (414)
.=++++...|+-+
T Consensus 305 r~g~~eL~s~~P~R 318 (520)
T KOG0573|consen 305 RRGLEELQSLYPKR 318 (520)
T ss_pred HHHHHHHHHhCCcc
Confidence 4567777777643
No 249
>PRK13191 putative peroxiredoxin; Provisional
Probab=84.83 E-value=1.1 Score=42.36 Aligned_cols=31 Identities=6% Similarity=0.067 Sum_probs=25.5
Q ss_pred CCcE-EEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QEPW-LVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~~v-lV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++.+ |+.|++.||+.|....+.|.++++.+.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~ 64 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFK 64 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHH
Confidence 4444 458899999999999999999888774
No 250
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=84.75 E-value=3.8 Score=45.60 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=45.5
Q ss_pred HHHHHcC-CcEEEEechHHHHHHH-HHH-------Hh-c--CCC----------------------------eEEEEEeC
Q 015013 106 RALEKFG-NDIAIAFSGAEDVALI-EYA-------HL-T--GRP----------------------------FRVFSLDT 145 (414)
Q Consensus 106 ~a~~~~~-~~i~vafSGGKDSvlL-~L~-------~~-~--~~~----------------------------i~VvflDT 145 (414)
..+.+.+ ..++|+.|||-||++. .|+ .+ . +.. +..+++-+
T Consensus 341 d~l~~~g~~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~ 420 (700)
T PLN02339 341 DYLRRSGASGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGS 420 (700)
T ss_pred HHHHHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCC
Confidence 3344434 5699999999999863 342 12 2 211 35556666
Q ss_pred CCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 146 GRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 146 G~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
-.--++|++-.+++++.+|+..+.+
T Consensus 421 ~~ss~~t~~~A~~la~~lG~~~~~i 445 (700)
T PLN02339 421 ENSSEETRSRAKQLADEIGSSHLDV 445 (700)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 6677899999999999999987665
No 251
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=84.27 E-value=1.1 Score=34.25 Aligned_cols=22 Identities=14% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|+.+||++|+.....|++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~ 24 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK 24 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC
Confidence 5679999999999998888753
No 252
>PRK13189 peroxiredoxin; Provisional
Probab=84.02 E-value=1.2 Score=42.29 Aligned_cols=31 Identities=19% Similarity=0.138 Sum_probs=25.6
Q ss_pred CC-cEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 372 QE-PWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 372 ~~-~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++ .+|+.|++.||+.|....+.|.++++.+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~ 66 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFR 66 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 45 45567889999999999999999888774
No 253
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=83.71 E-value=1 Score=34.95 Aligned_cols=22 Identities=14% Similarity=0.695 Sum_probs=18.5
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|..+|||+|......|++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc
Confidence 3578899999999999988763
No 254
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=82.94 E-value=2.1 Score=37.38 Aligned_cols=32 Identities=6% Similarity=0.099 Sum_probs=26.9
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
...+++|+.|+.+-||+|..+.+.+.++.+.+
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~ 41 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKY 41 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhc
Confidence 35688999999999999999999998877766
No 255
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=82.64 E-value=0.74 Score=35.94 Aligned_cols=23 Identities=17% Similarity=0.670 Sum_probs=20.7
Q ss_pred EEEEeCCCChhhHhHHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
|+.|+.+.||+|..+.+.++++.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~ 23 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLL 23 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHH
Confidence 46899999999999999999875
No 256
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=82.14 E-value=1.5 Score=33.26 Aligned_cols=21 Identities=14% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEEeCCCChhhHhHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee 396 (414)
++.|..+||++|+.....|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 567889999999999888875
No 257
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=81.47 E-value=1.5 Score=40.43 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee 396 (414)
..+..|+.|+-|.||+|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46789999999999999999998875
No 258
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=80.72 E-value=2.1 Score=39.66 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=26.6
Q ss_pred CCCcEEEEEeC-CCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYA-PWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyA-pWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++.+||.||+ .||+.|....+.|.++.+.+..
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~ 68 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE 68 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 45789999994 8899998877888888877753
No 259
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=80.40 E-value=1.7 Score=42.19 Aligned_cols=33 Identities=9% Similarity=-0.051 Sum_probs=28.5
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHh
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALV 404 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~ 404 (414)
++.-|+.||-.-|++|+++.|++...++.++..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~ 175 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLS 175 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCe
Confidence 457899999999999999999999988777543
No 260
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=79.37 E-value=1.9 Score=42.06 Aligned_cols=33 Identities=15% Similarity=0.070 Sum_probs=28.6
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIAL 403 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~ 403 (414)
.++.-||.||..-|++|+++.|++...++.++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi 181 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI 181 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhCC
Confidence 345789999999999999999999998887753
No 261
>PRK10329 glutaredoxin-like protein; Provisional
Probab=79.22 E-value=2.2 Score=33.80 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=18.4
Q ss_pred EEEEeCCCChhhHhHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee 396 (414)
+..|..+||++|++..-.|++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~ 23 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES 23 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH
Confidence 567889999999999988876
No 262
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=77.80 E-value=3.1 Score=40.70 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=38.4
Q ss_pred CCeEecCc-cchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCC
Q 015013 352 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFK 408 (414)
Q Consensus 352 ~~v~~l~~-~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~ 408 (414)
+.|..++. ++|-..+.-......|||.||-|-++.|+.|...|..+|..+...=|.+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvk 182 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVK 182 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEE
Confidence 46777754 5665555433345679999999999999999999999999986544433
No 263
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=77.33 E-value=2.9 Score=31.79 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=18.8
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|..+|||+|.+....+++.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~ 24 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN 24 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc
Confidence 5779999999999998888753
No 264
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=77.15 E-value=3.5 Score=33.84 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=18.6
Q ss_pred CCcEEEEEe----CCCChhhHhHHHHHHHH
Q 015013 372 QEPWLVVLY----APWCQFCQVIDVFMQIR 397 (414)
Q Consensus 372 ~~~vlV~Fy----ApWC~~Ck~m~p~~ee~ 397 (414)
..+|+|.-. +||||+|+.....|.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 345555433 49999999998888764
No 265
>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=76.34 E-value=23 Score=35.53 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=37.6
Q ss_pred CcEEEEechHHH-HHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCc
Q 015013 113 NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR 166 (414)
Q Consensus 113 ~~i~vafSGGKD-SvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~ 166 (414)
+.+++|+|||-| |++|-.+.+.+-++..+..|.|. .|-.+-.++=+.+.|-+
T Consensus 6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gak 58 (412)
T KOG1706|consen 6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAK 58 (412)
T ss_pred ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCce
Confidence 468899999999 56677888899999999999996 33333344444555653
No 266
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=75.11 E-value=2.8 Score=28.36 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHhCCCCCChh
Q 015013 259 NVKGNDIWNFLRTMDVPINSL 279 (414)
Q Consensus 259 dWt~~DVw~Yi~~~~lP~npL 279 (414)
.|+.+|+-.||..|||++.+-
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~ 23 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKS 23 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCC
Confidence 599999999999999998764
No 267
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=74.55 E-value=3 Score=31.81 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.5
Q ss_pred EEEeCCCChhhHhHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee 396 (414)
..|..++|++|+.....|++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56888999999999998886
No 268
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=73.29 E-value=3.9 Score=32.89 Aligned_cols=26 Identities=15% Similarity=0.443 Sum_probs=18.3
Q ss_pred CCcEEEEEe----CCCChhhHhHHHHHHHH
Q 015013 372 QEPWLVVLY----APWCQFCQVIDVFMQIR 397 (414)
Q Consensus 372 ~~~vlV~Fy----ApWC~~Ck~m~p~~ee~ 397 (414)
+.+|+|.-. +||||+|+.....|++.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 345555433 38999999988888764
No 269
>PRK10638 glutaredoxin 3; Provisional
Probab=72.00 E-value=4 Score=32.03 Aligned_cols=22 Identities=14% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|..+||++|+...-.+++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5577889999999998888764
No 270
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=71.53 E-value=4.9 Score=38.41 Aligned_cols=28 Identities=14% Similarity=0.276 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
..+.+|+.|.=|-||+|+++.+.++++-
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~ 133 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN 133 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh
Confidence 4677899999999999999999988753
No 271
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=71.23 E-value=8 Score=37.20 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=46.9
Q ss_pred CCCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCC
Q 015013 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFK 408 (414)
Q Consensus 351 ~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~ 408 (414)
+..|+.++.+..-.+.+-.+.++|.||+|-+=.||+-..-.+.|+++++.++....|.
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl 138 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFL 138 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhee
Confidence 3467888777745555555689999999999999999999999999999998766554
No 272
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=71.06 E-value=5.3 Score=30.96 Aligned_cols=25 Identities=12% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
|.+++++|+.|..+...++++++.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL 27 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc
Confidence 4457888999999999998876655
No 273
>PRK10824 glutaredoxin-4; Provisional
Probab=68.77 E-value=6.8 Score=33.47 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=18.4
Q ss_pred CCcEEEEEeC----CCChhhHhHHHHHHHH
Q 015013 372 QEPWLVVLYA----PWCQFCQVIDVFMQIR 397 (414)
Q Consensus 372 ~~~vlV~FyA----pWC~~Ck~m~p~~ee~ 397 (414)
..+|+|.--. ||||+|++....|.++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 3455554332 7999999999888765
No 274
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=68.17 E-value=2.9 Score=39.00 Aligned_cols=30 Identities=13% Similarity=0.378 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCChhhHhHHHHH---HHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFM---QIRFQII 401 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~---ee~~~i~ 401 (414)
+++.||+|+..-||||..+.+.+ +.+-+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~ 69 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL 69 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhC
Confidence 35779999999999999999876 5544443
No 275
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=67.17 E-value=5.7 Score=31.38 Aligned_cols=22 Identities=14% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
++.|.-++||+|++.+..+++.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~ 24 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK 24 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc
Confidence 5678999999999988888743
No 276
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=61.99 E-value=6.5 Score=32.76 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=23.4
Q ss_pred EEEeCccccHHHHHHHHHhCCCCCC
Q 015013 253 KWNPVANVKGNDIWNFLRTMDVPIN 277 (414)
Q Consensus 253 ki~PL~dWt~~DVw~Yi~~~~lP~n 277 (414)
|++||+.-+++||-.|...+|||+.
T Consensus 3 rIRPL~~v~E~ei~~ya~~~~lp~~ 27 (104)
T TIGR00269 3 RIKPLRYIPEKEVVLYAFLNELKVH 27 (104)
T ss_pred cccccccCCHHHHHHHHHHcCCCcC
Confidence 6899999999999999999999864
No 277
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=60.91 E-value=8.7 Score=32.23 Aligned_cols=24 Identities=17% Similarity=0.575 Sum_probs=19.2
Q ss_pred CCcEEEEEeCCCChhhHhHHHHHHH
Q 015013 372 QEPWLVVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 372 ~~~vlV~FyApWC~~Ck~m~p~~ee 396 (414)
..+ +|.|.-+||++|++++-.|.+
T Consensus 13 ~~~-VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 13 ENP-VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred cCC-EEEEECCcCchHHHHHHHHHh
Confidence 344 456999999999998888876
No 278
>PTZ00062 glutaredoxin; Provisional
Probab=60.18 E-value=11 Score=35.43 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=14.9
Q ss_pred eCCCChhhHhHHHHHHHH
Q 015013 380 YAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 380 yApWC~~Ck~m~p~~ee~ 397 (414)
++||||+|+++...|++.
T Consensus 124 ~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 124 TFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred CCCCChhHHHHHHHHHHc
Confidence 348999999999988863
No 279
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=59.57 E-value=12 Score=33.32 Aligned_cols=30 Identities=3% Similarity=-0.112 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCChhhHhH-HHHHHHHHHHHH
Q 015013 373 EPWLVVLYAPWCQFCQVI-DVFMQIRFQIIA 402 (414)
Q Consensus 373 ~~vlV~FyApWC~~Ck~m-~p~~ee~~~i~a 402 (414)
..||+.|.+.||+.|..- .+.|.+..+.+.
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~ 61 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELK 61 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHH
Confidence 344444559999999987 888998888774
No 280
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=58.47 E-value=8.8 Score=32.63 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=20.0
Q ss_pred hhhcCCCcEEEEEeCC----CChhhHhH
Q 015013 367 RLDHRQEPWLVVLYAP----WCQFCQVI 390 (414)
Q Consensus 367 ~~~~~~~~vlV~FyAp----WC~~Ck~m 390 (414)
..++..|.++|.||+| ||.+|+..
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~ 39 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNT 39 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHH
Confidence 3457889999999999 99999763
No 281
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=58.32 E-value=15 Score=34.54 Aligned_cols=53 Identities=9% Similarity=0.077 Sum_probs=46.6
Q ss_pred CCeEecCccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHh
Q 015013 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALV 404 (414)
Q Consensus 352 ~~v~~l~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~ 404 (414)
+.|..++..++.+-|...+.+--|||..|...-+.|.-+...|++++-+|...
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~i 143 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQI 143 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcc
Confidence 57899999999888877777788999999999999999999999998888544
No 282
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=58.03 E-value=13 Score=35.90 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.6
Q ss_pred CCCcEEEEEeCCCChhhHhHHHHHHHHH
Q 015013 371 RQEPWLVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 371 ~~~~vlV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
..+.+|+.|.=|-||+|+++.+.+.+..
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~ 143 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWV 143 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHh
Confidence 4567899999999999999988877643
No 283
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=57.02 E-value=97 Score=32.49 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC--ChH
Q 015013 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP--DAV 175 (414)
Q Consensus 99 ~a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P--~~~ 175 (414)
...+.++..+..+ +..-+++|++|.....+-+....++.=.|+. +...|..|+.+.+....++|+++..+.. +..
T Consensus 61 Ptv~~lE~~la~leg~~~av~~~SG~aAi~~al~all~~GD~VI~--~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~ 138 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNICSSGDHLLC--SSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTAD 138 (432)
T ss_pred cHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHhcCCCCEEEE--CCCchHHHHHHHHHHHHHCCCEEEEECCCCCHH
Confidence 4566677666654 4456788998887654322222333334554 4567889999999988899999887754 334
Q ss_pred HHHHHH
Q 015013 176 EVQALV 181 (414)
Q Consensus 176 ~~~~~~ 181 (414)
.+++.+
T Consensus 139 ~l~~~I 144 (432)
T PRK06702 139 EIVALA 144 (432)
T ss_pred HHHHhC
Confidence 444444
No 284
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=55.83 E-value=11 Score=31.00 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.9
Q ss_pred EEEeCCCChhhHhHHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee~ 397 (414)
..|+.|+|+.|+.....|++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~ 22 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH 22 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc
Confidence 568999999999988888764
No 285
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=55.67 E-value=35 Score=30.64 Aligned_cols=43 Identities=26% Similarity=0.320 Sum_probs=32.4
Q ss_pred EEEEEeCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 015013 139 RVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALV 181 (414)
Q Consensus 139 ~VvflDTG~~fp-ET~~~v~~l~~~~gl~i~~~~P~~~~~~~~~ 181 (414)
.++++|||.... +-.+.++++++.++++++++.-+...++.++
T Consensus 120 ~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~~~g~l~~l~~ll 163 (166)
T PF07796_consen 120 RVVLIDTGVYDEEDFEEKVREFAEFLGLPIEEIPGDLDLLEKLL 163 (166)
T ss_pred eEEEEecccccchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH
Confidence 689999997544 4578899999999999998755555454443
No 286
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=52.38 E-value=38 Score=29.99 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=26.6
Q ss_pred EEEechHHHHH---HHHHHHhcC-CCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 116 AIAFSGAEDVA---LIEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 116 ~vafSGGKDSv---lL~L~~~~~-~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
.|+||||+ .. +..|+.... ..++ +.++||+.+++. .+++.+. +++.+.
T Consensus 64 gVt~SGGE-l~~~~l~~ll~~lk~~Gl~-i~l~Tg~~~~~~---~~~il~~--iD~l~~ 115 (147)
T TIGR02826 64 CVLFLGGE-WNREALLSLLKIFKEKGLK-TCLYTGLEPKDI---PLELVQH--LDYLKT 115 (147)
T ss_pred EEEEechh-cCHHHHHHHHHHHHHCCCC-EEEECCCCCHHH---HHHHHHh--CCEEEE
Confidence 58999999 32 123433321 1233 468899888774 3344444 445544
No 287
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=50.52 E-value=41 Score=32.19 Aligned_cols=89 Identities=16% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHhcC--CCeEEE----EEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH---------HHHHHHhcCCCCCCc
Q 015013 127 LIEYAHLTG--RPFRVF----SLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE---------VQALVRSKGLFSFYE 191 (414)
Q Consensus 127 lL~L~~~~~--~~i~Vv----flDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~---------~~~~~~~~G~~~~~~ 191 (414)
++.|.+..+ |+...+ |+|-|+.--||..++--+..+|.-+|..++-.... ..+-..++|- .
T Consensus 61 L~eLFrtgG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGn----a 136 (306)
T KOG0373|consen 61 LLELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGN----A 136 (306)
T ss_pred HHHHHHhcCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCC----c
Confidence 455665543 343333 67899999999999999999999888877544322 1122233332 1
Q ss_pred ccchhhhcchhchhHHHHhccCcEEEec
Q 015013 192 DGHQECCRVRKVRPLRRALKGLRAWITG 219 (414)
Q Consensus 192 ~~~~~Cc~~~Kv~Pl~ral~~~~~~itG 219 (414)
+..++||.+.-..++...+.+.-..+-|
T Consensus 137 n~wkycckVFD~LtlaAiID~~vLCVHG 164 (306)
T KOG0373|consen 137 NVWKYCCKVFDFLTLAAIIDEKVLCVHG 164 (306)
T ss_pred hHHHHHHHHHhhhhHHHHhcCcEEEEcC
Confidence 3457999999999999888876544444
No 288
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=49.21 E-value=1.2e+02 Score=31.46 Aligned_cols=75 Identities=24% Similarity=0.394 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 015013 99 SPLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV 175 (414)
Q Consensus 99 ~a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~ 175 (414)
...+.+++.+... +..-+++||.|.-+...-++.-..+.=.|+..|. .|-.|+.+.+.+.+++|+++..+-|...
T Consensus 63 PT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~ll~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~ 138 (396)
T COG0626 63 PTRDALEEALAELEGGEDAFAFSSGMAAISTALLALLKAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDD 138 (396)
T ss_pred ccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHhcCCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCCh
Confidence 3445555554444 3456788886655433212222222224454454 5888999999999999999998876544
No 289
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=48.30 E-value=17 Score=30.25 Aligned_cols=20 Identities=5% Similarity=0.124 Sum_probs=17.1
Q ss_pred EEEeCCCChhhHhHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee 396 (414)
..|+.|+|+.|+.....+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 56889999999998887775
No 290
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=45.60 E-value=2.5e+02 Score=25.89 Aligned_cols=92 Identities=20% Similarity=0.188 Sum_probs=54.5
Q ss_pred HHHHH-HHHHHHhcCCCeEEEEEeCCCCcHHHH----HHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcccchh
Q 015013 122 AEDVA-LIEYAHLTGRPFRVFSLDTGRLNPETY----RFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 196 (414)
Q Consensus 122 GKDSv-lL~L~~~~~~~i~VvflDTG~~fpET~----~~v~~l~~~~gl~i~~~~P~~~~~~~~~~~~G~~~~~~~~~~~ 196 (414)
|-||+ .+..+...+-++.++|-|..++..+=| +-++++++++|+++.+-.-+...+.+.+. |+..-++.+. .
T Consensus 8 aPCs~~~~~~L~~~g~~vt~~fyNPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~--~~e~epE~g~-R 84 (176)
T PF02677_consen 8 APCSTYPLERLREEGFDVTGYFYNPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVK--GLEDEPEGGK-R 84 (176)
T ss_pred ccccHHHHHHHHHCCCCeEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHh--hCccCCccCc-h
Confidence 34554 466666678899999999998877644 33567778889988765444444444433 4332333332 3
Q ss_pred h--hcchhchhHHHHhc--cCcEE
Q 015013 197 C--CRVRKVRPLRRALK--GLRAW 216 (414)
Q Consensus 197 C--c~~~Kv~Pl~ral~--~~~~~ 216 (414)
| |....++--.+..+ |++..
T Consensus 85 C~~Cy~~RL~~tA~~A~e~gfd~F 108 (176)
T PF02677_consen 85 CRVCYDLRLEKTAQYAKELGFDYF 108 (176)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEE
Confidence 5 55555544444433 55543
No 291
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=45.40 E-value=53 Score=28.82 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=30.0
Q ss_pred hHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 362 MENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 362 ~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
.++.+. ...++.|++.|--.|-+.|.+|.-++.+.++.+
T Consensus 11 VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v 49 (133)
T PF02966_consen 11 VDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKV 49 (133)
T ss_dssp HHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHh
Confidence 344443 347889999999999999999999999877765
No 292
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=44.24 E-value=1.5e+02 Score=30.48 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=41.8
Q ss_pred cEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC-hHHHHHHHH
Q 015013 114 DIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AVEVQALVR 182 (414)
Q Consensus 114 ~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~-~~~~~~~~~ 182 (414)
.-++.||.|.-....-+.....+.-.|+..+ ..|..|+++++++..++|+++..+.+. ...++..+.
T Consensus 71 ~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~--~~Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~ 138 (386)
T PF01053_consen 71 EDALLFSSGMAAISAALLALLKPGDHIVASD--DLYGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALR 138 (386)
T ss_dssp SEEEEESSHHHHHHHHHHHHS-TTBEEEEES--SSSHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHC
T ss_pred cceeeccchHHHHHHHHHhhcccCCceEecC--CccCcchhhhhhhhcccCcEEEEeCchhHHHHHhhcc
Confidence 4566677665544222222233333456554 568999999999999999999988774 334544443
No 293
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=42.03 E-value=24 Score=29.46 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=16.6
Q ss_pred EEEeCCCChhhHhHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee 396 (414)
..|+.|+|+.|+.....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46889999999998777764
No 294
>PRK09028 cystathionine beta-lyase; Provisional
Probab=41.95 E-value=1.6e+02 Score=30.37 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=36.7
Q ss_pred EEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 115 IAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 115 i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
-++.++||.....+-+....++.=.|+..|.+ |+.|+.+.....+++|+++..+.+.
T Consensus 78 ~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~--Y~~t~~l~~~~l~~~Gi~v~~v~~~ 134 (394)
T PRK09028 78 GTALYPSGAAAISNALLSFLKAGDHLLMVDSC--YEPTRDLCDKILKGFGIETTYYDPM 134 (394)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCC--cHHHHHHHHHhhhhcceEEEEECCC
Confidence 34567788776543111113333356666665 7889999888888899988877654
No 295
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=40.08 E-value=1.9e+02 Score=29.59 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=42.4
Q ss_pred HHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 102 EIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 102 eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
+.++..+..+ +..-++.+++|.....+-+..-.++.-.|+..|. .|+.|+.+++...+++|+++..+.+.
T Consensus 53 ~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~--~y~~t~~~~~~~~~~~gi~v~~~d~~ 123 (377)
T TIGR01324 53 FALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDS--AYEPTRYFCDIVLKRMGVDITYYDPL 123 (377)
T ss_pred HHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCC--CcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 4444444433 3334556777776544322222344335665554 47889999998889999998877554
No 296
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=39.17 E-value=93 Score=30.73 Aligned_cols=60 Identities=12% Similarity=-0.036 Sum_probs=41.5
Q ss_pred EEEEechHHHHHHHHHHHhcCC-CeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH
Q 015013 115 IAIAFSGAEDVALIEYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE 176 (414)
Q Consensus 115 i~vafSGGKDSvlL~L~~~~~~-~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~ 176 (414)
|+=-+|.||-.+.+|++..... .-.++|+||..-|+. ++++++...+--++.+..|....
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p--~r~~~l~~~~~d~l~v~~~~~~e 125 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDP--ERAKQLGVDLLDNLLVSQPDTGE 125 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCH--HHHHHHHHhhhcceeEecCCCHH
Confidence 3434788998888988777533 338899999986555 45666666643367788887654
No 297
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=39.08 E-value=29 Score=25.99 Aligned_cols=20 Identities=5% Similarity=0.179 Sum_probs=16.2
Q ss_pred EEeCCCChhhHhHHHHHHHH
Q 015013 378 VLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 378 ~FyApWC~~Ck~m~p~~ee~ 397 (414)
.|+.+||++|++..-.+++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~ 22 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA 22 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc
Confidence 56789999999987777754
No 298
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=38.89 E-value=42 Score=35.72 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=33.8
Q ss_pred hhhhccC-CCCeEecCccchHHHHhhhcCCCcE-EEEEeCCCChhhHhHHHHHHHHH
Q 015013 344 AVADIFN-SQNLVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 344 ~~~dl~~-~~~v~~l~~~~~e~~v~~~~~~~~v-lV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
+..+|++ ++.-..|+++..+.+.. -++++ +-.|+++.||+|......+++++
T Consensus 89 ~i~~i~~~~~~~~~l~~~~~~~i~~---~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a 142 (517)
T PRK15317 89 LVLALLQVGGHPPKLDQEVIEQIKA---LDGDFHFETYVSLSCHNCPDVVQALNLMA 142 (517)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHh---cCCCeEEEEEEcCCCCCcHHHHHHHHHHH
Confidence 4455532 33445566666666554 33444 88899999999988777776643
No 299
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=38.13 E-value=2.9e+02 Score=28.55 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=38.3
Q ss_pred HcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 110 KFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 110 ~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
.++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.......+.+|++++.+.+
T Consensus 69 l~g~~~~v~~~sG~~Ai~~al~~l~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~v~~ 129 (418)
T TIGR01326 69 LEGGVAALAVASGQAAITYAILNLAQAGDNIVSSS--YLYGGTYNLFKHTLKRLGIEVRFVDP 129 (418)
T ss_pred HhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEEC--CCcHHHHHHHHHHHHHcCcEEEEECC
Confidence 34444567788887765432222222322455443 56788999888888999998887754
No 300
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=38.11 E-value=2.3e+02 Score=29.03 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=43.9
Q ss_pred HHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 015013 102 EIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL 180 (414)
Q Consensus 102 eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~~~~~~~ 180 (414)
+.++..+.. ++..-++.+++|.....+-+....++.-.|+.. ...|+.|..+++.+ ..+|+++..+.++...+++.
T Consensus 56 ~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~--~~~y~~~~~~~~~~-~~~g~~v~~~~~d~~~l~~~ 132 (385)
T PRK08574 56 RPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLP--MEAYGTTLRLLKSL-EKFGVKVVLAYPSTEDIIEA 132 (385)
T ss_pred HHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchhHHHHHHHh-hccCcEEEEECCCHHHHHHh
Confidence 334443333 343345667888765433222223333244433 45788898888876 77898887777765555554
Q ss_pred H
Q 015013 181 V 181 (414)
Q Consensus 181 ~ 181 (414)
+
T Consensus 133 i 133 (385)
T PRK08574 133 I 133 (385)
T ss_pred c
Confidence 4
No 301
>PLN02673 quinolinate synthetase A
Probab=37.71 E-value=97 Score=34.43 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCcccccccccCcchhccccChhhHHHHHHHhccC-CHHHHHHHHHHH
Q 015013 54 RPLNAEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENA-SPLEIMDRALEK 110 (414)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~a~eil~~a~~~ 110 (414)
.|.+..|+..+...+.+.+...++..|..+ ..++++-++++.. +.+++.+.+++.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~lP--~kl~eIveeF~~l~dWEeRYr~LIeL 108 (724)
T PLN02673 53 PPPDSAPSNASPFSCSAVAFSPSQTTELVP--CKLQRLIKEFKSLTEPVDRVKRLLHY 108 (724)
T ss_pred CCCCCCCCCCCccceeeeecCCCcccccCC--HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 355555555544444444444443333333 3667777777655 556888877643
No 302
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=37.50 E-value=3e+02 Score=28.08 Aligned_cols=56 Identities=20% Similarity=0.174 Sum_probs=35.5
Q ss_pred EEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 115 IAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 115 i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
-++.++||..+..+-+.....+.-.|+.- ...|+.|+.+.......+|+++..+..
T Consensus 78 ~~v~~ssG~~Ai~~al~al~~~Gd~Vi~~--~~~y~~t~~~~~~~~~~~G~~v~~vd~ 133 (390)
T PRK08133 78 ACVATASGMAAILAVVMALLQAGDHVVSS--RSLFGSTVSLFEKIFARFGIETTFVDL 133 (390)
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEc--cCcchhHHHHHHHHHHHcCcEEEEECC
Confidence 35677888876543222222222244432 346888999988888899999887754
No 303
>PRK07050 cystathionine beta-lyase; Provisional
Probab=36.77 E-value=2.6e+02 Score=28.62 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=43.4
Q ss_pred HHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 101 LEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 101 ~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.+.++..+..+ +..-++.++||.....+-+....++.-.|+..+ ..|+.|+.+.+.+...+|+++..+.+.
T Consensus 67 ~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al~~~GD~Vl~~~--~~y~~~~~~~~~~~~~~Gi~v~~vd~~ 138 (394)
T PRK07050 67 SLALAQRLAEIEGGRHALLQPSGLAAISLVYFGLVKAGDDVLIPD--NAYGPNRDHGEWLARDFGITVRFYDPL 138 (394)
T ss_pred HHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHhCCCCEEEEec--CCcccHHHHHHHHHHhcCeEEEEECCC
Confidence 44555444443 444567778887765431111133333455544 456788999998999999998877543
No 304
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=36.40 E-value=33 Score=28.86 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=16.5
Q ss_pred EEEeCCCChhhHhHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQI 396 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee 396 (414)
..|+.++|+.|+.....+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA 21 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46889999999998777764
No 305
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=36.10 E-value=49 Score=35.64 Aligned_cols=53 Identities=13% Similarity=0.195 Sum_probs=33.9
Q ss_pred chhhhccC-CCCeEecCccchHHHHhhhcCCCcEEE-EEeCCCChhhHhHHHHHHHHH
Q 015013 343 EAVADIFN-SQNLVTLNRTGMENLARLDHRQEPWLV-VLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 343 ~~~~dl~~-~~~v~~l~~~~~e~~v~~~~~~~~vlV-~FyApWC~~Ck~m~p~~ee~~ 398 (414)
++..+|++ ++.-..++++..+++.. -++++-| .|.+|+|++|......+++++
T Consensus 448 s~i~~i~~~~~~~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~ 502 (555)
T TIGR03143 448 SFILALYNAAGPGQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIA 502 (555)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHH
Confidence 35555542 23455677777666654 4566644 568999999987766666543
No 306
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=35.55 E-value=77 Score=27.28 Aligned_cols=48 Identities=17% Similarity=0.103 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHHHhcCCC-eEEEEEeCC
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRP-FRVFSLDTG 146 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~~~~~~~-i~VvflDTG 146 (414)
...+.+++..+-.++.++|+++..-|...| +.+.+.+.+ .+.-++||.
T Consensus 63 ~~~~v~~~l~~~l~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~ 112 (156)
T cd06130 63 TFPEVWPEIKPFLGGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTV 112 (156)
T ss_pred CHHHHHHHHHHHhCCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHH
Confidence 455677777776677899999999998877 566665432 233355664
No 307
>PRK08114 cystathionine beta-lyase; Provisional
Probab=34.39 E-value=3.2e+02 Score=28.26 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 100 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 100 a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
..+.++..+... +..-++.|+.|.-+.-+-+.....+.=.|+.. ...|..|+.+++++.+++|+++.++.+.
T Consensus 63 t~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~ 135 (395)
T PRK08114 63 THFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPL 135 (395)
T ss_pred hHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCC
Confidence 345555544443 34467778777665432111112222244433 4468899999999999999999888654
No 308
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.21 E-value=72 Score=27.91 Aligned_cols=39 Identities=8% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 363 e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++.+. ....+.|++.|--.|-|.|..|...+...++.+.
T Consensus 15 dqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vs 53 (142)
T KOG3414|consen 15 DQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVS 53 (142)
T ss_pred HHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHh
Confidence 44333 3467889999999999999999999988776653
No 309
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=34.12 E-value=94 Score=30.02 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=32.0
Q ss_pred echHHHHHHHHHHHhc-------CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCC
Q 015013 119 FSGAEDVALIEYAHLT-------GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 165 (414)
Q Consensus 119 fSGGKDSvlL~L~~~~-------~~~i~VvflDTG~~fpET~~~v~~l~~~~gl 165 (414)
.+-||-..+|+|+... +.+-.|+|+||...|+- +-+.++.++|++
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~--~Rl~~i~~~~~~ 98 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP--ERLQQIAERFGL 98 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H--HHHHHHHHHTTS
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH--HHHHHHhhcccc
Confidence 4478988888887653 35678999999999884 334456677764
No 310
>PRK05967 cystathionine beta-lyase; Provisional
Probab=33.97 E-value=3.1e+02 Score=28.41 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.+.++..+.. .+..-++.++.|.....+-+.....+.=.|+..+.+ |+.|+.++.++.+++|+++..+.+.
T Consensus 66 ~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~--Y~~~~~l~~~~l~~~Gi~v~~vd~~ 137 (395)
T PRK05967 66 TDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSV--YYPTRHFCDTMLKRLGVEVEYYDPE 137 (395)
T ss_pred HHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCC--cHHHHHHHHHHHHhcCeEEEEeCCC
Confidence 4445444432 223334555556543222222223443355655554 7789999999999999999888654
No 311
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=33.29 E-value=2.9e+02 Score=26.93 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 015013 100 PLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA 174 (414)
Q Consensus 100 a~eil~~a~~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~~ 174 (414)
-..+++.+.....+.+++++|. .+++-.++.+.++...|+..++--.+ |-..+++++.+ .|++++++ |+.
T Consensus 74 ~~~~~~~A~~~i~~dvILT~s~--S~~v~~~l~~~~~~~~V~v~ESrP~~-eG~~~a~~L~~-~GI~vtli-~Ds 143 (253)
T PRK06372 74 EKMAIEHAKPLFNDSVIGTISS--SQVLKAFISSSEKIKSVYILESRPML-EGIDMAKLLVK-SGIDVVLL-TDA 143 (253)
T ss_pred HHHHHHHHHhhcCCCEEEEeCC--cHHHHHHHHhcCCCCEEEEecCCCch-HHHHHHHHHHH-CCCCEEEE-ehh
Confidence 3456667777777678888883 34554455455544677666665444 44677777765 58988755 443
No 312
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=32.92 E-value=90 Score=26.25 Aligned_cols=43 Identities=9% Similarity=0.208 Sum_probs=29.3
Q ss_pred CccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 358 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 358 ~~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
+.++++++++ .+..+++++.=.++.||-+.+....|++.++-.
T Consensus 6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~ 48 (105)
T PF11009_consen 6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEES 48 (105)
T ss_dssp SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcC
Confidence 4567788776 456899999999999999998877777655443
No 313
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=32.71 E-value=3.7e+02 Score=27.29 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=39.5
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
.+.++..+.. ++..-++.+++|.....+-+.....+.-.|+.. ...|+.|+.+...+.+++|+++..+..
T Consensus 56 ~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al~~~Gd~Vl~~--~~~~~~t~~~~~~~~~~~g~~v~~v~~ 126 (380)
T TIGR01325 56 VAAFEERIAALEGAERAVATATGMSAIQAALMTLLQAGDHVVAS--RSLFGSTVGFISEILPRFGIEVSFVDP 126 (380)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEe--cCCcchHHHHHHHHHHHhCCEEEEECC
Confidence 3344433333 343345567777765433221112222234543 346788999888888999999877643
No 314
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=32.18 E-value=68 Score=32.22 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=39.5
Q ss_pred cCCCCeEecCccchHHHHhhhcCCCcEEEEEeCC----CChhhHhHHHHHHHHH
Q 015013 349 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAP----WCQFCQVIDVFMQIRF 398 (414)
Q Consensus 349 ~~~~~v~~l~~~~~e~~v~~~~~~~~vlV~FyAp----WC~~Ck~m~p~~ee~~ 398 (414)
.+...|+.+++++|..++.-...+..++|.|.|. -|.-|+..+.+|.-.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva 90 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVA 90 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHH
Confidence 3457899999999999998666666788999875 6999998876666543
No 315
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.07 E-value=1.8e+02 Score=23.41 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCcEEEEe--chHHHHHHHHHHHhc-CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc-CChHH
Q 015013 101 LEIMDRALEKFGNDIAIAF--SGAEDVALIEYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF-PDAVE 176 (414)
Q Consensus 101 ~eil~~a~~~~~~~i~vaf--SGGKDSvlL~L~~~~-~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~-P~~~~ 176 (414)
...++..++.+|..+. -+ -||...-.-.|-..+ ..|+-|++ |++--..+...+++.++++|+++...+ .....
T Consensus 12 ~~~~~~~~~~~G~~~~-~hg~~~~~~~~~~~l~~~i~~aD~VIv~--t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLI-HHGRDGGDEKKASRLPSKIKKADLVIVF--TDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred HHHHHHHHHHcCCEEE-EEecCCCCccchhHHHHhcCCCCEEEEE--eCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 4567777888886443 33 122221221222232 23444444 556667788999999999999998876 44444
Q ss_pred HHH
Q 015013 177 VQA 179 (414)
Q Consensus 177 ~~~ 179 (414)
+.+
T Consensus 89 l~~ 91 (97)
T PF10087_consen 89 LER 91 (97)
T ss_pred HHH
Confidence 433
No 316
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=31.24 E-value=55 Score=27.42 Aligned_cols=22 Identities=14% Similarity=0.467 Sum_probs=17.4
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
+..|+.++|+.|+.....|++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~ 23 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH 23 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 3467889999999988877753
No 317
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=30.98 E-value=54 Score=24.72 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=17.2
Q ss_pred EEEEeCCCChhhHhHHHHHHHH
Q 015013 376 LVVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 376 lV~FyApWC~~Ck~m~p~~ee~ 397 (414)
+..|+.+.|++|++..-.+.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~ 23 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH 23 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC
Confidence 3457889999999988777654
No 318
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=30.59 E-value=83 Score=29.66 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=35.1
Q ss_pred cCCHHHHHHHHHHH---cC-CcEEEEechHHHHH----HHHHHHhcC-CCeEEEEEeCCCCcHHHHHHHHHHHHH
Q 015013 97 NASPLEIMDRALEK---FG-NDIAIAFSGAEDVA----LIEYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKH 162 (414)
Q Consensus 97 ~~~a~eil~~a~~~---~~-~~i~vafSGGKDSv----lL~L~~~~~-~~i~VvflDTG~~fpET~~~v~~l~~~ 162 (414)
..++.++++.+.+. |. ..=.|+||||+=.+ ++++++... ..+. ..+||...+|. +.++++...
T Consensus 18 ~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~-~~leTnG~~~~--~~~~~l~~~ 89 (213)
T PRK10076 18 DITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVS-CAIETAGDAPA--SKLLPLAKL 89 (213)
T ss_pred ccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCC-EEEECCCCCCH--HHHHHHHHh
Confidence 35788888887764 11 11247899998653 335544432 2343 45888655552 333444443
No 319
>PRK07740 hypothetical protein; Provisional
Probab=29.25 E-value=1.1e+02 Score=29.45 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHcCCcEEEEechHHHHHHH-HHH-HhcCCCeEEEEEeCCCCcHHHHHH-----HHHHHHHhCCcE
Q 015013 99 SPLEIMDRALEKFGNDIAIAFSGAEDVALI-EYA-HLTGRPFRVFSLDTGRLNPETYRF-----FDEVEKHFGIRI 167 (414)
Q Consensus 99 ~a~eil~~a~~~~~~~i~vafSGGKDSvlL-~L~-~~~~~~i~VvflDTG~~fpET~~~-----v~~l~~~~gl~i 167 (414)
+..++++..++..++.+.|++...-|-..| +.. +..+.+...-++||...+...+.. ++.+++.||+++
T Consensus 127 ~~~evl~~f~~fi~~~~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~~~~gi~~ 202 (244)
T PRK07740 127 PLAEVLHRFYAFIGAGVLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLTKLLAHERDFPTLDDALAYYGIPI 202 (244)
T ss_pred CHHHHHHHHHHHhCCCEEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHHHHHcCCCCCCCHHHHHHHCCcCC
Confidence 455677777776677899999999997766 333 334555555677876443322211 455555566544
No 320
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=28.95 E-value=47 Score=31.14 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=35.7
Q ss_pred ccchHHHHhhhcCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCC
Q 015013 359 RTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFK 408 (414)
Q Consensus 359 ~~~~e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~ 408 (414)
+.+|=+.+. .+..||+.||-|--..|+-|...++.++...-.-=+++
T Consensus 74 Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFik 120 (211)
T KOG1672|consen 74 EKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIK 120 (211)
T ss_pred HHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEE
Confidence 555555454 78889999999999999999999998887654333333
No 321
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=28.91 E-value=45 Score=24.50 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=16.5
Q ss_pred EEeCCCChhhHhHHHHHHHH
Q 015013 378 VLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 378 ~FyApWC~~Ck~m~p~~ee~ 397 (414)
.|+.++|++|+++.-.+.++
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc
Confidence 57788999999988887764
No 322
>KOG2594 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.17 E-value=3.6e+02 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=25.4
Q ss_pred CCeEEEEeCccccHHHHHHHHHhCCCCC
Q 015013 249 GSLVKWNPVANVKGNDIWNFLRTMDVPI 276 (414)
Q Consensus 249 ~~~~ki~PL~dWt~~DVw~Yi~~~~lP~ 276 (414)
+.+.-++||-|.+..||..|+...|++|
T Consensus 238 ~d~~llrPLrDl~~~Ei~~y~~l~~l~~ 265 (396)
T KOG2594|consen 238 GDVKLLRPLRDLLSLEITSYCLLDGLAY 265 (396)
T ss_pred CCceeehhHHHHHHHHHHHHHHhhcCCc
Confidence 3466789999999999999999999998
No 323
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=26.86 E-value=51 Score=23.21 Aligned_cols=20 Identities=10% Similarity=0.183 Sum_probs=16.5
Q ss_pred EEeCCCChhhHhHHHHHHHH
Q 015013 378 VLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 378 ~FyApWC~~Ck~m~p~~ee~ 397 (414)
.|+.++|+.|++..-.++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~ 22 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK 22 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc
Confidence 57889999999888887754
No 324
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=26.31 E-value=1.2e+02 Score=27.39 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=37.1
Q ss_pred CcEEEEechHHHHHH-HHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHh---CCcEEE
Q 015013 113 NDIAIAFSGAEDVAL-IEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF---GIRIEY 169 (414)
Q Consensus 113 ~~i~vafSGGKDSvl-L~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~---gl~i~~ 169 (414)
..++|++|-|+-..- ++|+.. +.++.++.-.+|.+-+.|.++=+++++.+ |.++..
T Consensus 29 k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~ 88 (186)
T COG1751 29 KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLT 88 (186)
T ss_pred ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHHcCceeee
Confidence 569999987765443 344443 25678888889988777776655555544 666543
No 325
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.12 E-value=3.2e+02 Score=28.45 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=43.4
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
.+.++..+.. .+.+-++.+++|.....+-+.....+.=.|+..+ ..|+.|+.....+.+++|++++.+..
T Consensus 66 ~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~--~~y~~t~~~~~~~~~~~Gv~v~~vd~ 136 (431)
T PRK08248 66 TDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSS--SLYGGTYNLFAHTLPKLGITVKFVDP 136 (431)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcc--CchhhHHHHHHHHHHhCCEEEEEECC
Confidence 3445444433 3455677888887765433322233322455444 45888999998989999999887744
No 326
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=26.06 E-value=88 Score=24.56 Aligned_cols=29 Identities=3% Similarity=-0.096 Sum_probs=22.4
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQII 401 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~ 401 (414)
....+++|-|+..+|+ .....|.++|+.+
T Consensus 15 ~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~ 43 (97)
T cd02981 15 DKDDVVVVGFFKDEES---EEYKTFEKVAESL 43 (97)
T ss_pred ccCCeEEEEEECCCCc---HHHHHHHHHHHhc
Confidence 4788999999999987 4566677766665
No 327
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=25.71 E-value=1.3e+02 Score=25.35 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=37.6
Q ss_pred HHHHcCC--cEEEEe-c-hH-HHHHHHHHHHh-cCCCeEEEEEeCCCCc-------HHHHHHHHHHHHHhCCcEEE
Q 015013 107 ALEKFGN--DIAIAF-S-GA-EDVALIEYAHL-TGRPFRVFSLDTGRLN-------PETYRFFDEVEKHFGIRIEY 169 (414)
Q Consensus 107 a~~~~~~--~i~vaf-S-GG-KDSvlL~L~~~-~~~~i~VvflDTG~~f-------pET~~~v~~l~~~~gl~i~~ 169 (414)
+++.|++ -=+|+| + || .+.-+++++.+ ....+.+||+=|-... |.-.++.+.+++++|++|+.
T Consensus 29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 3566763 345666 3 65 33333333333 2445668888775433 66667788888899998764
No 328
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=25.55 E-value=3.6e+02 Score=27.77 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=42.4
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
.+.++..+.. ++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.+...+.+++|++++.+..
T Consensus 72 ~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~--~~~~~t~~~~~~~~~~~G~~v~~vd~ 142 (403)
T PRK07810 72 VSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAAR--SLFGSCFVVCNEILPRWGVETVFVDG 142 (403)
T ss_pred HHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEcc--CCcchHHHHHHHHHHHcCcEEEEECC
Confidence 4444444443 3444567788787765432211223333455443 36778999999999999999887754
No 329
>PRK06234 methionine gamma-lyase; Provisional
Probab=24.81 E-value=3.8e+02 Score=27.46 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=41.4
Q ss_pred HHHHHHHH-HcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 102 EIMDRALE-KFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 102 eil~~a~~-~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
..++..+. .++..-++.+++|.....+-+....++.-.|+..+ ..|+.|+.......+.+|+++..+..
T Consensus 67 ~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~ll~~Gd~Vl~~~--~~y~~~~~~~~~~~~~~G~~v~~vd~ 136 (400)
T PRK06234 67 TEVENKLALLEGGEAAVVAASGMGAISSSLWSALKAGDHVVASD--TLYGCTFALLNHGLTRYGVEVTFVDT 136 (400)
T ss_pred HHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEec--CccchHHHHHHHHHhhCCeEEEEECC
Confidence 34444433 33444567788888764332222233333455544 35788888888888889998887744
No 330
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=24.76 E-value=6.1e+02 Score=26.45 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 100 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 100 a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
..+.++..+..+ +..-++++|+|.....+-+.....+.=.|+.. ...|+.|+.++.....++|++++.+.+.
T Consensus 65 ~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~ll~~Gd~Vi~~--~~~y~~t~~~~~~~l~~~Gi~v~~vd~~ 137 (433)
T PRK08134 65 TVAVLEERVAALEGGVGAIATASGQAALHLAIATLMGAGSHIVAS--SALYGGSHNLLHYTLRRFGIETTFVKPG 137 (433)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEe--CCccHHHHHHHHHHHhhCCeEEEEECCC
Confidence 355565555543 43446778888776432111112222245544 4578899999988778899998887654
No 331
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=24.13 E-value=6.4e+02 Score=25.73 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=41.9
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.+.++..+.. ++..-++.+++|.....+-+.....+.=.|+..+ ..|+.|+........++|+++..+...
T Consensus 61 ~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al~~~Gd~Vi~~~--~~y~~t~~~~~~~~~~~G~~~~~vd~~ 132 (391)
T TIGR01328 61 VSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTILKAGDHLISDE--CLYGCTFALLEHALTKFGIQVDFINMA 132 (391)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEec--CcchHHHHHHHHHHhcCCeEEEEECCC
Confidence 3444444443 3444567788777654332222233333455433 357889988888888999988776543
No 332
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=23.62 E-value=71 Score=23.56 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=16.6
Q ss_pred EEEeCCCChhhHhHHHHHHHH
Q 015013 377 VVLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 377 V~FyApWC~~Ck~m~p~~ee~ 397 (414)
..|+.++|+.|++..-.+++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK 22 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc
Confidence 457789999999988777654
No 333
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=23.41 E-value=3.7e+02 Score=27.12 Aligned_cols=67 Identities=16% Similarity=0.258 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcC-CcEEEEec-hHHHHHHHHHHHhcCCCeEEEEEeCCCCcHH----HHHHHHHHHHHhCCc
Q 015013 100 PLEIMDRALEKFG-NDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPE----TYRFFDEVEKHFGIR 166 (414)
Q Consensus 100 a~eil~~a~~~~~-~~i~vafS-GGKDSvlL~L~~~~~~~i~VvflDTG~~fpE----T~~~v~~l~~~~gl~ 166 (414)
++|+..++-+.+. +.|+++.+ ||.-.-+++=....+++++||-+|-...-+. .+...+..++.+++.
T Consensus 168 a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~ 240 (323)
T COG2515 168 ALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLG 240 (323)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4667766654232 45666655 5543334444444678899999997765544 445555566668765
No 334
>PRK06767 methionine gamma-lyase; Provisional
Probab=23.09 E-value=6.8e+02 Score=25.40 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=38.4
Q ss_pred HHHHHHH-HHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 102 EIMDRAL-EKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 102 eil~~a~-~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
+.++..+ +.++..-++.+++|.+...+-+.....+.-.|+..+ ..|+.|+.+++.+.+++|+++..+.
T Consensus 64 ~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al~~~Gd~Vv~~~--~~y~~~~~~~~~~~~~~gi~~~~~~ 132 (386)
T PRK06767 64 KLFEERMAVLEGGEEALAFGSGMAAISATLIGFLKAGDHIICSN--GLYGCTYGFLEVLEEKFMITHSFCD 132 (386)
T ss_pred HHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEcC--CcHHHHHHHHHHHHhhcCeEEEEeC
Confidence 3344333 334444566777776543221111133333445433 3678899999998889998776553
No 335
>PRK05939 hypothetical protein; Provisional
Probab=22.90 E-value=4.5e+02 Score=26.99 Aligned_cols=70 Identities=13% Similarity=0.187 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 100 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 100 a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
..+.++..+..+ +..-+++|+.|.....+-+....++.=.|+..+ ..|+.|..+...+ +++|++++.+.+
T Consensus 48 ~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~--~~y~~t~~~~~~l-~~~G~~v~~v~~ 118 (397)
T PRK05939 48 TTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQ--FLFGNTNSLFGTL-RGLGVEVTMVDA 118 (397)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECC--CccccHHHHHHHH-HhcCCEEEEECC
Confidence 345555544443 444677787665433222212233333455433 5689998888664 678998887754
No 336
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=22.64 E-value=5.3e+02 Score=27.71 Aligned_cols=69 Identities=23% Similarity=0.422 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHcC-CcEEEEe--chHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 99 SPLEIMDRALEKFG-NDIAIAF--SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 99 ~a~eil~~a~~~~~-~~i~vaf--SGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
...-|++.+..+.. +.+++.| |---..++|| +.+.+++++|+-+|.--.|..+ .+++.+.++ |++..++
T Consensus 345 A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~-A~~~~k~frVvVVDSRP~~EG~-~~lr~Lv~~-GinctYv 416 (556)
T KOG1467|consen 345 ADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLE-AKELGKKFRVVVVDSRPNLEGR-KLLRRLVDR-GINCTYV 416 (556)
T ss_pred HHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHH-HHHhCcceEEEEEeCCCCcchH-HHHHHHHHc-CCCeEEE
Confidence 34556666665543 3466654 2222223345 7778999999999998777654 445555544 8887654
No 337
>PF12105 SpoU_methylas_C: SpoU, rRNA methylase, C-terminal; InterPro: IPR022724 This domain is found in bacteria and is about 60 amino acids in length. It is found in association with PF00588 from PFAM. This domain has a conserved LFE sequence motif. Some members of the Pfam family SpoU_methylase, PF00588 from PFAM, carry this very distinctive sequence at their extreme C terminus. The exact function of this domain is not known. ; GO: 0009020 tRNA (guanosine-2'-O-)-methyltransferase activity; PDB: 1ZJR_A.
Probab=22.62 E-value=20 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=7.9
Q ss_pred CccccHHHHHHHHHhCCCCCChhhhCC
Q 015013 257 VANVKGNDIWNFLRTMDVPINSLHSQG 283 (414)
Q Consensus 257 L~dWt~~DVw~Yi~~~~lP~npLYd~G 283 (414)
|+.|..-+|-.+.++.|+||.+|=+.|
T Consensus 23 LFEw~yP~lA~~cr~kg~pYP~Lde~G 49 (57)
T PF12105_consen 23 LFEWGYPVLAKWCRRKGLPYPPLDEDG 49 (57)
T ss_dssp HHHHHHHHH------------------
T ss_pred HHcccCHHHHhhccccccccccccccc
Confidence 678999999999999999999997776
No 338
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=22.56 E-value=92 Score=29.40 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 015013 135 GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 170 (414)
Q Consensus 135 ~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~ 170 (414)
+.++.|+-+|.+.-|+.-|+|.+++++..|..+.+.
T Consensus 102 ~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Viva 137 (234)
T KOG3125|consen 102 NGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVA 137 (234)
T ss_pred cCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEE
Confidence 457999999999999999999999999999887765
No 339
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=22.36 E-value=1.7e+02 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=24.8
Q ss_pred EEEEechHHH------HHHHHHHHhc---CCCeEEEEEeCCCCcHHHHHHHHHHHH
Q 015013 115 IAIAFSGAED------VALIEYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEK 161 (414)
Q Consensus 115 i~vafSGGKD------SvlL~L~~~~---~~~i~VvflDTG~~fpET~~~v~~l~~ 161 (414)
-.|+||||+= ..++.+++++ -++.. +++-||+.+.|-....+++.+
T Consensus 67 ~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~-i~~~tGy~~eel~~~~~~~l~ 121 (154)
T PRK11121 67 QGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKD-IWVWTGYKLDELNAAQRQVVD 121 (154)
T ss_pred CcEEEECCCccchhhHHHHHHHHHHHHHHCCCCC-EEEecCCCHHHHHHHHHHHHh
Confidence 3578999972 1233454442 12222 245599999875444333443
No 340
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.22 E-value=1.1e+02 Score=27.74 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHhhhcCCCcEEEEEeCCCChhhHhHHHHH
Q 015013 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFM 394 (414)
Q Consensus 363 e~~v~~~~~~~~vlV~FyApWC~~Ck~m~p~~ 394 (414)
+..-.+...++-.+++|-.+-|++|.+|....
T Consensus 33 ~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 33 DDNKSISPNDKYLLLMFESNGCSYCERFKKDL 64 (182)
T ss_pred HHHHhcCccCcEEEEEEcCCCChHHHHHHHhh
Confidence 33344456788999999999999999987543
No 341
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=22.19 E-value=1.1e+02 Score=29.50 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=34.6
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHHHhhcCCCCccc
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGFKPELAF 413 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a~~~~~~~~~~~ 413 (414)
..+..+||.+--.+|..|..-+..++.+-+++.. ...+||.|
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~--~g~~~I~f 65 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLEN--EGLSNISF 65 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHH--CCCCceEE
Confidence 5788899999999999999999999998888754 46666665
No 342
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=22.13 E-value=7.4e+02 Score=25.65 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=36.2
Q ss_pred HHcCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 109 EKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 109 ~~~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
+.++.+-++.+++|.....+-+.....+.-.|+..+ ..|..|+.++....+++|++++.+.+
T Consensus 74 ~l~g~~~al~~~SG~~Ai~~al~all~pGd~VIv~~--~~y~~t~~~~~~~~~~~G~~v~~vd~ 135 (427)
T PRK05994 74 ALEGGTAALAVASGHAAQFLVFHTLLQPGDEFIAAR--KLYGGSINQFGHAFKSFGWQVRWADA 135 (427)
T ss_pred HHhCCCcEEEEcCHHHHHHHHHHHHhCCCCEEEEec--CcchhHHHHHHHHHHhcCcEEEEECC
Confidence 334544567777664333221111133333455443 45788888888888899998887754
No 343
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=22.13 E-value=2.2e+02 Score=26.66 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=58.3
Q ss_pred hHHHHHHHhcc-CCHHHHHHHHHHHcCCcEEEEec-hHHHHHHHHHHHhc----CCCeEEEEEeCCCCcHHHHHHHHHHH
Q 015013 87 DFEQFAKELEN-ASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVE 160 (414)
Q Consensus 87 ~~~~l~~~l~~-~~a~eil~~a~~~~~~~i~vafS-GGKDSvlL~L~~~~----~~~i~VvflDTG~~fpET~~~v~~l~ 160 (414)
|+--+++-|+. ..|.++|+..+.- +++.+|+|- -|.=..-++|+.+. ....|.=+-||-....-|..=.++++
T Consensus 77 D~VIlsqtLQ~~~~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 77 DYVILSQTLQAVRRPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred cEEehHhHHHhHhHHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHH
Confidence 33344444433 2588888888754 667889997 67666667777553 34567778899977778888889999
Q ss_pred HHhCCcEE
Q 015013 161 KHFGIRIE 168 (414)
Q Consensus 161 ~~~gl~i~ 168 (414)
+..|++|.
T Consensus 156 ~~~~i~I~ 163 (193)
T PF07021_consen 156 RELGIRIE 163 (193)
T ss_pred HHCCCEEE
Confidence 99999885
No 344
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=21.80 E-value=5.2e+02 Score=26.37 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=34.8
Q ss_pred CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 112 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 112 ~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
+..-++.++||.....+-+.....+.-.|+..+ ..|+.++.++..+....++++..+.
T Consensus 66 g~~~~i~~~sg~~Ai~~~l~~l~~~GD~Vl~~~--~~y~~~~~~~~~~~~~~gi~v~~vd 123 (386)
T PRK08045 66 GGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPH--DCYGGSYRLFDSLAKRGCYRVLFVD 123 (386)
T ss_pred CCCeEEEECCHHHHHHHHHHHHcCCCCEEEEcC--CCcHHHHHHHHHHHhhCCeEEEEeC
Confidence 333456677776543222222233433566555 3578999999888888777776553
No 345
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=21.58 E-value=1.6e+02 Score=28.43 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=37.8
Q ss_pred HHHHHHHHHHcCCcEEEEec--hHHHHH----------HHHHHHhcCCC--eEEEEEeCCCC---cHHHHHHHHHHHHHh
Q 015013 101 LEIMDRALEKFGNDIAIAFS--GAEDVA----------LIEYAHLTGRP--FRVFSLDTGRL---NPETYRFFDEVEKHF 163 (414)
Q Consensus 101 ~eil~~a~~~~~~~i~vafS--GGKDSv----------lL~L~~~~~~~--i~VvflDTG~~---fpET~~~v~~l~~~~ 163 (414)
-++++.+.+.|+++|+|+.. +|++++ +.+++++.... -.++|-|-..+ ----.+...++.+.+
T Consensus 111 p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~n~~l~~~l~~~~ 190 (241)
T COG0106 111 PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSGPNVDLVKELAEAV 190 (241)
T ss_pred HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCCCCHHHHHHHHHHh
Confidence 35777777888888888876 666643 23566654221 23444443211 001124455566666
Q ss_pred CCcEEEE
Q 015013 164 GIRIEYM 170 (414)
Q Consensus 164 gl~i~~~ 170 (414)
.+++...
T Consensus 191 ~ipviaS 197 (241)
T COG0106 191 DIPVIAS 197 (241)
T ss_pred CcCEEEe
Confidence 7776643
No 346
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.55 E-value=5.6e+02 Score=24.05 Aligned_cols=91 Identities=16% Similarity=0.204 Sum_probs=53.3
Q ss_pred EEEEechHHHHH-HHHHHHhcCCCeEEEEEeCCCCcHHHHHHH----HHHHHHhCCcEEEEcC-ChHHHHHHHHhcCCCC
Q 015013 115 IAIAFSGAEDVA-LIEYAHLTGRPFRVFSLDTGRLNPETYRFF----DEVEKHFGIRIEYMFP-DAVEVQALVRSKGLFS 188 (414)
Q Consensus 115 i~vafSGGKDSv-lL~L~~~~~~~i~VvflDTG~~fpET~~~v----~~l~~~~gl~i~~~~P-~~~~~~~~~~~~G~~~ 188 (414)
+.+=+--+-||+ +|..+...+.++.++|-|...|+-.-|..+ +++++++|+++..-.- +...| +..-+|+..
T Consensus 6 iLlH~CCAPcs~y~le~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w--~~~vKg~E~ 83 (204)
T COG1636 6 LLLHSCCAPCSGYVLEKLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKW--FERVKGMED 83 (204)
T ss_pred eEEEeecCCCcHHHHHHHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHH--HHHhhcchh
Confidence 444333556665 567777778899999999999887766554 5677888988764322 12222 223445533
Q ss_pred CCcccchhh--hcchhchhHHH
Q 015013 189 FYEDGHQEC--CRVRKVRPLRR 208 (414)
Q Consensus 189 ~~~~~~~~C--c~~~Kv~Pl~r 208 (414)
.++.+. .| |..+..+-...
T Consensus 84 EpE~G~-RC~~Cfd~Rle~tA~ 104 (204)
T COG1636 84 EPEGGK-RCTMCFDMRLEKTAK 104 (204)
T ss_pred CCCCCc-hhHhHHHHHHHHHHH
Confidence 344333 45 55444444433
No 347
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=21.47 E-value=68 Score=23.77 Aligned_cols=20 Identities=15% Similarity=0.492 Sum_probs=16.0
Q ss_pred EEeCCCChhhHhHHHHHHHH
Q 015013 378 VLYAPWCQFCQVIDVFMQIR 397 (414)
Q Consensus 378 ~FyApWC~~Ck~m~p~~ee~ 397 (414)
.++.++|++|++..-.+.+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 46789999999888777764
No 348
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=21.28 E-value=51 Score=24.21 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.1
Q ss_pred cccHHHHHHHHHhCCCC-CChhhhCCCCC
Q 015013 259 NVKGNDIWNFLRTMDVP-INSLHSQGYIS 286 (414)
Q Consensus 259 dWt~~DVw~Yi~~~~lP-~npLYd~Gy~S 286 (414)
+|+.++|-.|+...+++ |.+....|+.+
T Consensus 2 ~W~~~~V~~WL~~~~l~~y~~~F~~~~i~ 30 (64)
T PF00536_consen 2 EWSVEDVSEWLKSLGLEQYAENFEKNYID 30 (64)
T ss_dssp GTSHHHHHHHHHHTTGGGGHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHcCCch
Confidence 69999999999999985 44444455544
No 349
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=21.25 E-value=6.5e+02 Score=25.59 Aligned_cols=69 Identities=17% Similarity=0.119 Sum_probs=41.7
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P 172 (414)
.+.++..+.. .+..-+++++-|.+.+.+ ++....+.=.|+..+. .|+.|+.+...+.+++|++++.+.+
T Consensus 52 ~~~Le~~la~l~g~~~al~~~SG~~Al~~-~l~~l~pGd~Vi~~~~--~y~~t~~~~~~~~~~~gi~v~~vd~ 121 (380)
T PRK06176 52 RFALEELIADLEGGVKGFAFASGLAGIHA-VFSLFQSGDHVLLGDD--VYGGTFRLFDKVLVKNGLSCTIIDT 121 (380)
T ss_pred HHHHHHHHHHHhCCCCEEEECCHHHHHHH-HHHHcCCCCEEEEcCC--ChhHHHHHHHHHHHhcCeEEEEcCC
Confidence 4444444444 344456677766654322 2222344345665553 5899999999999999998876643
No 350
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=21.23 E-value=62 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=29.3
Q ss_pred cccHHHHHHHHH----hCCCCCChhhhCCCCCCCCccCCCC
Q 015013 259 NVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTRP 295 (414)
Q Consensus 259 dWt~~DVw~Yi~----~~~lP~npLYd~Gy~SiGC~~CT~~ 295 (414)
.||.+||+.++. +++++.+++--..|.=-|-..|...
T Consensus 4 ~Wt~~~V~~Wl~w~~~e~~l~~~~i~~~~F~m~Gk~LC~ms 44 (68)
T cd08757 4 YWTKNDVLEWLQFVAEQNKLDAECISFQKFNIDGQTLCSMT 44 (68)
T ss_pred hCCHHHHHHHHHHHHHHcCCCCCcCCccccCCCHHHHHcCC
Confidence 699999999886 4889998777677766787777553
No 351
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=21.22 E-value=4.6e+02 Score=27.45 Aligned_cols=70 Identities=17% Similarity=0.316 Sum_probs=43.0
Q ss_pred HHHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 100 PLEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 100 a~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
..+.++..+.. ++..-++.|+.|.....+-+.....+.-.|+..+ ..|..|+.++.....++|+++..+.
T Consensus 70 ~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~all~~Gd~Vv~~~--~~y~~t~~~~~~~l~~~Gi~v~~vd 140 (436)
T PRK07812 70 TQDVVEQRIAALEGGVAALLLASGQAAETFAILNLAGAGDHIVSSP--RLYGGTYNLFHYTLPKLGIEVSFVE 140 (436)
T ss_pred hHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHHhCCCCEEEEeC--CcchHHHHHHHHHhhcCeEEEEEEC
Confidence 34455555554 4545677888776654322222233333555444 4779999988888788998887763
No 352
>PRK06434 cystathionine gamma-lyase; Validated
Probab=21.10 E-value=4.8e+02 Score=26.81 Aligned_cols=72 Identities=22% Similarity=0.405 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHc-CCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 100 PLEIMDRALEKF-GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 100 a~eil~~a~~~~-~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
..+.++..+..+ +.+-+++|+.|.....+-+.....+.=.|+. +...|..|+.+......++|+++..+.++
T Consensus 65 ~~~~lE~~la~leg~~~av~~sSG~aAi~~al~all~~GD~Vl~--~~~~yg~t~~~~~~~~~~~Gi~v~fvd~~ 137 (384)
T PRK06434 65 TVQAFEEKYAVLENAEHALSFSSGMGAITSAILSLIKKGKRILS--ISDLYGQTFYFFNKVLKTLGIHVDYIDTD 137 (384)
T ss_pred hHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEE--ecCccchHHHHHHHHHHhcCcEEEEECCC
Confidence 345555555443 4456788887765433222112333224444 34578889999999999999998877554
No 353
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=21.00 E-value=6.5e+02 Score=26.35 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHc-CCcEEEEechHH-HHHH--HHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 99 SPLEIMDRALEKF-GNDIAIAFSGAE-DVAL--IEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 99 ~a~eil~~a~~~~-~~~i~vafSGGK-DSvl--L~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
....+++..+... +..-+++||.|. -..+ ++|+ ..+ ..++-. +..|-.|+.+++++..++|+....+.++
T Consensus 77 Pt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L~-~~g--~~iV~~--~~~Y~gT~~~l~~~~~~~gie~~~vd~~ 150 (409)
T KOG0053|consen 77 PTRDVLESGIAALEGAAHALLFSSGMAAITVALLHLL-PAG--DHIVAT--GDVYGGTLRILRKFLPKFGGEGDFVDVD 150 (409)
T ss_pred CchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHhc-CCC--CcEEEe--CCCcccHHHHHHHHHHHhCceeeeechh
Confidence 4555665555443 333467777554 3332 3444 222 234433 4778999999999999999988777544
No 354
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=20.98 E-value=1.3e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCC-cEEEEcCChH
Q 015013 151 ETYRFFDEVEKHFGI-RIEYMFPDAV 175 (414)
Q Consensus 151 ET~~~v~~l~~~~gl-~i~~~~P~~~ 175 (414)
...++++++.++||+ ++..++|.-.
T Consensus 20 ~g~~~v~~i~~~~gI~diN~IKPGIg 45 (100)
T PF15608_consen 20 QGWAEVERIAERYGISDINLIKPGIG 45 (100)
T ss_pred HHHHHHHHHHHHhCCCCcccccCChh
Confidence 466777888888876 4666666543
No 355
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.96 E-value=1.3e+02 Score=32.01 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=29.1
Q ss_pred CeEecCccchHHHHhhhcCCCc-EEEEEeCCCChhhHhHHHHHHHHH
Q 015013 353 NLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQVIDVFMQIRF 398 (414)
Q Consensus 353 ~v~~l~~~~~e~~v~~~~~~~~-vlV~FyApWC~~Ck~m~p~~ee~~ 398 (414)
.-..|+++..+.+.. -+++ -+-.|+++-||+|......+++++
T Consensus 100 ~~~~l~~~~~~~~~~---~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a 143 (515)
T TIGR03140 100 HGPKLDEGIIDRIRR---LNGPLHFETYVSLTCQNCPDVVQALNQMA 143 (515)
T ss_pred CCCCCCHHHHHHHHh---cCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 345566766666554 3344 478899999999987766665543
No 356
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.84 E-value=53 Score=25.90 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHH----hCCCCCChhhhCCCCCCCCccCCCC
Q 015013 258 ANVKGNDIWNFLR----TMDVPINSLHSQGYISIGCEPCTRP 295 (414)
Q Consensus 258 ~dWt~~DVw~Yi~----~~~lP~npLYd~Gy~SiGC~~CT~~ 295 (414)
-.||+.+||.+|. .|.++.+.+--+-|.=-|...|...
T Consensus 6 ~~Wtk~~V~~WL~~~~~~~~~~~~~i~~~~F~MnG~~LC~ms 47 (74)
T cd08539 6 QYWTKYQVWEWLQHLLDTNQLDASCIPFQEFDINGEHLCSMS 47 (74)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcccccHHHcCCChHHHHccC
Confidence 4699999999987 5588887666666777888888665
No 357
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.66 E-value=6.5e+02 Score=25.28 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=39.4
Q ss_pred HHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 102 EIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 102 eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
+.++..+.. .+..-++.++||.....+ ++....+.-.|+..+ ..|+.|+.+.+...+++|+++..+.
T Consensus 55 ~~le~~la~l~g~~~~~~~~sG~~ai~~-~~~ll~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd 122 (366)
T PRK08247 55 GVLEQAIADLEGGDQGFACSSGMAAIQL-VMSLFRSGDELIVSS--DLYGGTYRLFEEHWKKWNVRFVYVN 122 (366)
T ss_pred HHHHHHHHHHhCCCcEEEEcCHHHHHHH-HHHHhCCCCEEEEec--CCcCcHHHHHHHHhhccCceEEEEC
Confidence 334433333 333456778888654332 122223333455544 4478899988888889999887764
No 358
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=20.45 E-value=5.2e+02 Score=26.35 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=38.8
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF 171 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~ 171 (414)
.+.++..+.. ++.+-++.+++|.....+-+.....+.-.|+.. ...|+.|+..+..+.+++|+++..+.
T Consensus 63 ~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~all~~Gd~Vl~~--~~~y~~t~~~~~~~~~~~gi~~~~~d 132 (388)
T PRK07811 63 RTALEEQLAALEGGAYGRAFSSGMAATDCLLRAVLRPGDHIVIP--NDAYGGTFRLIDKVFTRWGVEYTPVD 132 (388)
T ss_pred HHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHHhCCCCEEEEc--CCCchHHHHHHHHhCcCCCeEEEEeC
Confidence 3444444443 344456677777533222111113333345543 35689999988888788898877664
No 359
>PRK05968 hypothetical protein; Provisional
Probab=20.44 E-value=7.3e+02 Score=25.25 Aligned_cols=71 Identities=17% Similarity=0.360 Sum_probs=41.1
Q ss_pred HHHHHHHHHH-cCCcEEEEechHHHHHHHHHHHhcCCCeEEEEEeCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 015013 101 LEIMDRALEK-FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173 (414)
Q Consensus 101 ~eil~~a~~~-~~~~i~vafSGGKDSvlL~L~~~~~~~i~VvflDTG~~fpET~~~v~~l~~~~gl~i~~~~P~ 173 (414)
.+.++..+.. ++.+-++.|++|.....+-+.....+.=.|+..+ ..|+.|+.+.......+|+++..+...
T Consensus 65 ~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al~~~Gd~Vl~~~--~~y~~t~~~~~~~~~~~G~~v~~vd~~ 136 (389)
T PRK05968 65 VRAFEEMLAKLEGAEDARGFASGMAAISSTVLSFVEPGDRIVAVR--HVYPDAFRLFETILKRMGVEVDYVDGR 136 (389)
T ss_pred HHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEeC--CCchHHHHHHHHHHHHcCceEEEeCCC
Confidence 3444444443 3433456667665432222222233333455544 478999999988899999998877543
No 360
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=20.44 E-value=33 Score=34.27 Aligned_cols=33 Identities=18% Similarity=0.602 Sum_probs=26.2
Q ss_pred cCCCcEEEEEeCCCChhhHhHHHHHHHHHHHHH
Q 015013 370 HRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIA 402 (414)
Q Consensus 370 ~~~~~vlV~FyApWC~~Ck~m~p~~ee~~~i~a 402 (414)
++...|=+.||+.|||..+..+|.|+=+...+.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcc
Confidence 446678889999999999999998886655553
No 361
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=20.34 E-value=1.7e+02 Score=27.90 Aligned_cols=64 Identities=17% Similarity=0.245 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCcEEEEechHHHHH-HH-HHHHh------cCCCeEEEEEe--CCCC--cHHHH-H-HHHHHHHHhCC
Q 015013 102 EIMDRALEKFGNDIAIAFSGAEDVA-LI-EYAHL------TGRPFRVFSLD--TGRL--NPETY-R-FFDEVEKHFGI 165 (414)
Q Consensus 102 eil~~a~~~~~~~i~vafSGGKDSv-lL-~L~~~------~~~~i~VvflD--TG~~--fpET~-~-~v~~l~~~~gl 165 (414)
++|+.++++-+....+++|||..-. ++ +|... ...++.||.+| -|.. .++.. . ..+.+.++++.
T Consensus 22 ~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~DEr~gv~~~~~~s~~~~~~~~l~~~~~~ 99 (261)
T PRK00443 22 NRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNLDEYVGLPADHPESYRYFMRENFFDHVDI 99 (261)
T ss_pred HHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeCceecCCCCCChHHHHHHHHHHHhccCCC
Confidence 4555555544444667899997643 33 45531 23578999999 4433 23322 2 23455555554
No 362
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=20.02 E-value=3.1e+02 Score=25.41 Aligned_cols=103 Identities=12% Similarity=0.008 Sum_probs=53.8
Q ss_pred EEechHHHH-------HHHHHHHhc-CCCeEEEEEeCCCCc-HHHHHHHHHHHHHh-CCcEEEEcCC-hHHHHHHHH-hc
Q 015013 117 IAFSGAEDV-------ALIEYAHLT-GRPFRVFSLDTGRLN-PETYRFFDEVEKHF-GIRIEYMFPD-AVEVQALVR-SK 184 (414)
Q Consensus 117 vafSGGKDS-------vlL~L~~~~-~~~i~VvflDTG~~f-pET~~~v~~l~~~~-gl~i~~~~P~-~~~~~~~~~-~~ 184 (414)
+..|||.|. .+-+++.+. +....+.|+-|.... ++..+.+.+.-+++ |.++..+... .....+.+. ..
T Consensus 3 ~~igg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad 82 (212)
T cd03146 3 LLTSGGGLGYLAHALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD 82 (212)
T ss_pred EEEeCCcccccccchHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC
Confidence 567777763 222444443 466789999998664 44455556666778 8877665411 111112222 22
Q ss_pred CCCCCCcccchhhhcchhchhHHHHhccC---cEEEecc
Q 015013 185 GLFSFYEDGHQECCRVRKVRPLRRALKGL---RAWITGQ 220 (414)
Q Consensus 185 G~~~~~~~~~~~Cc~~~Kv~Pl~ral~~~---~~~itGi 220 (414)
.+. ++--+...+-..+|-.++...++.. ...+.|+
T Consensus 83 ~I~-l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~ 120 (212)
T cd03146 83 VIY-VGGGNTFNLLAQWREHGLDAILKAALERGVVYIGW 120 (212)
T ss_pred EEE-ECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEE
Confidence 221 1111233455555555666666532 3556665
Done!