RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 015013
(414 letters)
>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase.
Length = 457
Score = 712 bits (1840), Expect = 0.0
Identities = 292/389 (75%), Positives = 336/389 (86%), Gaps = 9/389 (2%)
Query: 6 TSSNSISSSSFALTSSSNDIKVSQIGSFRLVDRAHVASTSLS---QRRSLVRPLNAEPKR 62
+SS++ISSS + + +S++ K QIGS RL+DR +++ + S +R S +PLNA+P
Sbjct: 2 SSSSAISSSGSSRSGASSESKAKQIGSLRLLDRGGLSARAYSLSGKRSSAAKPLNAQPAA 61
Query: 63 NDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGA 122
+++P AAT EV E+ EDFE+ AKELENASPLEIMD+ALEKFGNDIAIAFSGA
Sbjct: 62 RQAMIPSAATAV-AEVPEEEGEVEDFEKLAKELENASPLEIMDKALEKFGNDIAIAFSGA 120
Query: 123 EDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR 182
EDVALIEYAHLTGRPFRVFSLDTGRLNPETYR FD VEKH+GIRIEYMFPDAVEVQALVR
Sbjct: 121 EDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALVR 180
Query: 183 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFE 242
+KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTR+E+PVVQVDPVFE
Sbjct: 181 NKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFE 240
Query: 243 GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHE 302
GL+GG GSLVKWNP+ANV GN++WNFLRTMDVP+NSLH+QGY+SIGCEPCTRPVLPGQHE
Sbjct: 241 GLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHE 300
Query: 303 REGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGM 362
REGRWWWEDAKAKECGLHKGNIK+ED NG N + AVADIFNSQN+V L+R G+
Sbjct: 301 REGRWWWEDAKAKECGLHKGNIKEED-----NGAANDNGNAAVADIFNSQNVVALSRAGI 355
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVID 391
ENL +L++R+EPWLVVLYAPWC FCQ ++
Sbjct: 356 ENLLKLENRKEPWLVVLYAPWCPFCQAME 384
>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase,
thioredoxin-independent. This enzyme, involved in the
assimilation of inorganic sulfate, is closely related to
the thioredoxin-dependent PAPS reductase of Bacteria
(CysH) and Saccharomyces cerevisiae. However, it has its
own C-terminal thioredoxin-like domain and is not
thioredoxin-dependent. Also, it has a substrate
preference for 5'-adenylylsulfate (APS) over
3'-phosphoadenylylsulfate (PAPS) so the pathway does not
require an APS kinase (CysC) to convert APS to PAPS.
Arabidopsis thaliana appears to have three isozymes, all
able to complement E. coli CysH mutants (even in
backgrounds lacking thioredoxin or APS kinase) but
likely localized to different compartments in
Arabidopsis [Central intermediary metabolism, Sulfur
metabolism].
Length = 463
Score = 698 bits (1803), Expect = 0.0
Identities = 315/396 (79%), Positives = 350/396 (88%), Gaps = 11/396 (2%)
Query: 1 MALAVTSSNS-ISSSSFALTSSSNDIKVSQIGSFRLVDRAHVASTS--LSQRRSLVRPLN 57
MALAVTSS++ IS S + + S + K +QIGSFRL+DR H S S LS+RR V+PLN
Sbjct: 1 MALAVTSSSTAISGISLSRSGESTEAKAAQIGSFRLLDRPHTISPSVNLSRRRLSVKPLN 60
Query: 58 AEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAI 117
AEPKRN+S+VP AAT PEV EKV EDFE+ AK+LENASPLEIMD+ALEKFGNDIAI
Sbjct: 61 AEPKRNESIVPSAATTVAPEVEEKVVEVEDFEKLAKKLENASPLEIMDKALEKFGNDIAI 120
Query: 118 AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177
AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEK +GIRIEYMFPDAVEV
Sbjct: 121 AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEV 180
Query: 178 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 237
QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKDQSPGTRSEIPVVQV
Sbjct: 181 QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQV 240
Query: 238 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 297
DPVFEGL+GGVGSLVKWNPVANV+G D+WNFLRTMDVP+N+LH+QGY+SIGCEPCTRPVL
Sbjct: 241 DPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVL 300
Query: 298 PGQHEREGRWWWEDAKAKECGLHKGNIKQE--DAAVNGNGNGAGNASEAVADIFNSQNLV 355
PGQHEREGRWWWEDAKAKECGLHKGNIK+E D AVNGNG S+AVADIF+S N+V
Sbjct: 301 PGQHEREGRWWWEDAKAKECGLHKGNIKEETLDGAVNGNG------SDAVADIFDSNNVV 354
Query: 356 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVID 391
+L+R G+ENL +L+ R+E WLVVLYAPWC FCQ ++
Sbjct: 355 SLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAME 390
>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase;
Provisional.
Length = 241
Score = 286 bits (735), Expect = 8e-96
Identities = 110/254 (43%), Positives = 142/254 (55%), Gaps = 14/254 (5%)
Query: 73 LATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYA 131
L K + D + ELE AS E + ALE FG +A+ S GAED L+
Sbjct: 1 LNALNALPKADLALDLAELNAELEGASAQERLAWALENFGGRLALVSSFGAEDAVLLHLV 60
Query: 132 HLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE 191
V LDTG L PETYRF DE+ + + ++ PDA + R GL+
Sbjct: 61 AQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDASAAEQEARYGGLWEQSV 120
Query: 192 DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSL 251
+ ECCR+RKV PL RAL GL AWITG R++QS TR+ +PV+++D G
Sbjct: 121 EDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEID----------GGR 169
Query: 252 VKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWED 311
K NP+A+ D+W +L+ D+P + L QGY SIGCEPCTRPV PG+ ER GR WW
Sbjct: 170 FKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGR-WWGG 228
Query: 312 AKAKECGLHKGNIK 325
K KECGLH+GN+
Sbjct: 229 LK-KECGLHEGNLP 241
>gnl|CDD|233701 TIGR02055, APS_reductase, thioredoxin-dependent adenylylsulfate APS
reductase. This model describes recently identified
adenosine 5'-phosphosulfate (APS) reductase activity
found in sulfate-assimilatory prokaryotes, thus
separating it from the traditionally described
phosphoadenosine 5'-phosphosulfate (PAPS) reductases
found in bacteria and fungi. Homologous to PAPS
reductase in enterobacteria, cyanobacteria, and yeast,
APS reductase here clusters with, and demonstrates
greater homology to plant APS reductase. Additionally,
the presence of two conserved C-terminal motifs
(CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate
specificity and serves as a FeS cluster [Central
intermediary metabolism, Sulfur metabolism].
Length = 191
Score = 251 bits (644), Expect = 6e-83
Identities = 95/200 (47%), Positives = 125/200 (62%), Gaps = 9/200 (4%)
Query: 120 SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 179
GAEDV L++ A +VF LDTGRL ETY D+V + + I I+ + P + V+
Sbjct: 1 LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEE 60
Query: 180 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP 239
V+ GL FY ECC +RKV PL+RAL G+ AWITG R+DQSP TR++ P +++D
Sbjct: 61 QVKEYGLNLFYRSVPHECCGIRKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEID- 118
Query: 240 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPG 299
LVK NP+A+ D+W ++ ++P N LH +GY SIGCEPCTRPV PG
Sbjct: 119 -------EAFGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPG 171
Query: 300 QHEREGRWWWEDAKAKECGL 319
+ R GRWWWE+A KECGL
Sbjct: 172 EDPRAGRWWWEEAAKKECGL 191
>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate
sulfotransferase (PAPS reductase)/FAD synthetase and
related enzymes [Amino acid transport and metabolism /
Coenzyme metabolism].
Length = 261
Score = 216 bits (552), Expect = 3e-68
Identities = 92/248 (37%), Positives = 132/248 (53%), Gaps = 14/248 (5%)
Query: 80 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPF 138
K E+ +LE SP+EI+ A E+F N + ++FS G + L+ A F
Sbjct: 7 TKDRMSENLASLLDKLEAESPIEILRWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDF 66
Query: 139 RVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC 198
V LDTG PETY F D + + +G+ ++ PD + G + + CC
Sbjct: 67 PVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDDEVAEG--EKYGGKLWEPSVERWCC 124
Query: 199 RVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 256
+RKV PL+RAL AW TG R+D+SP TR+++PVV D F ++ NP
Sbjct: 125 DIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEFGES-------IRVNP 176
Query: 257 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAK 315
+A+ D+W ++ ++P N L+ QGY SIGC PCTRPV P + ER GRW E A+
Sbjct: 177 LADWTELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKT 236
Query: 316 ECGLHKGN 323
ECGLH+ +
Sbjct: 237 ECGLHRAD 244
>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase
family. This domain is found in phosphoadenosine
phosphosulfate (PAPS) reductase enzymes or PAPS
sulfotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP). It is also
found in NodP nodulation protein P from Rhizobium which
has ATP sulfurylase activity (sulfate adenylate
transferase).
Length = 173
Score = 191 bits (488), Expect = 1e-59
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 15/184 (8%)
Query: 115 IAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 173
+ ++FS G + + L+ A P V +DTG PETY F DE+E+ +G+ ++ P+
Sbjct: 2 LVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEKYGLNLKVYLPE 61
Query: 174 AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSE 231
+ + S Y + CCR+RKV PL+RALK G AW TG R+D+SP +R++
Sbjct: 62 DSFAEGINPEGIPSSLY----RRCCRLRKVEPLKRALKELGFDAWFTGLRRDESP-SRAK 116
Query: 232 IPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEP 291
+P+V +D F + +K P+ N D+W ++ +VP N L+ QGY SIGC P
Sbjct: 117 LPIVSIDGDFPKV-------IKVFPLLNWTETDVWQYILANNVPYNPLYDQGYRSIGCYP 169
Query: 292 CTRP 295
CT P
Sbjct: 170 CTGP 173
>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine
phosphosulphate (PAPS) reductase enzymes or PAPS
sulphotransferase. PAPS reductase is part of the adenine
nucleotide alpha hydrolases superfamily also including N
type ATP PPases and ATP sulphurylases. A highly modified
version of the P loop, the fingerprint peptide of
mononucleotide-binding proteins, is present in the
active site of the protein, which appears to be a
positively charged cleft containing a number of
conserved arginine and lysine residues. Although PAPS
reductase has no ATPase activity, it shows a striking
similarity to the structure of the ATP pyrophosphatase
(ATP PPase) domain of GMP synthetase, indicating that
both enzyme families have evolved from a common
ancestral nucleotide-binding fold. The enzyme uses
thioredoxin as an electron donor for the reduction of
PAPS to phospho-adenosine-phosphate (PAP) . It is also
found in NodP nodulation protein P from Rhizobium
meliloti which has ATP sulphurylase activity (sulphate
adenylate transferase) .
Length = 173
Score = 172 bits (438), Expect = 2e-52
Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 114 DIAIAFS-GAEDVALIEYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 169
++ ++FS G + L+ A P V LDTG PETY F D V + +G+ +
Sbjct: 1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVV 60
Query: 170 MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPG 227
+ P + L F + CCR+ KV PLRRALK L AWITG R+D+S
Sbjct: 61 VRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120
Query: 228 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 287
V D G G ++K NP+ + D+W +L +P N L+ QGY SI
Sbjct: 121 RALLPVVWTDD--------GKGGILKVNPLLDWTYEDVWAYLARHGLPYNPLYDQGYRSI 172
Query: 288 G 288
G
Sbjct: 173 G 173
>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin).
This enzyme, involved in the assimilation of inorganic
sulfate, is designated cysH in Bacteria and MET16 in
Saccharomyces cerevisiae. Synonyms include
phosphoadenosine phosphosulfate reductase, PAPS
reductase, and PAPS reductase, thioredoxin-dependent. In
a reaction requiring reduced thioredoxin and NADPH, it
converts 3(prime)-phosphoadenylylsulfate (PAPS) to
sulfite and adenosine 3(prime),5(prime) diphosphate
(PAP). A related family of plant enzymes, scoring below
the trusted cutoff, differs in having a thioredoxin-like
C-terminal domain, not requiring thioredoxin, and in
having a preference for 5(prime)-adenylylsulfate (APS)
over PAPS [Central intermediary metabolism, Sulfur
metabolism].
Length = 212
Score = 155 bits (394), Expect = 3e-45
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 18/225 (8%)
Query: 100 PLEIMDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
EI+ A FG + + S G + L++ V LDTG PETY DE
Sbjct: 1 AQEIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDE 60
Query: 159 VEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAW 216
+ + + + I+ PD A +K +E + +RKV P+ RALK L AW
Sbjct: 61 LTERYPLNIKVYKPD--LSLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAW 118
Query: 217 ITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI 276
TG R+DQ P +R+ + ++ +D F ++K P+ + D++ ++ ++P
Sbjct: 119 FTGLRRDQGP-SRANLSILNIDEKFG--------ILKVLPLIDWTWKDVYQYIDAHNLPY 169
Query: 277 NSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 320
N LH QGY SIG TRPV G+ ER GRW KAK ECGLH
Sbjct: 170 NPLHDQGYPSIGDYHSTRPVKEGEDERAGRW---KGKAKTECGLH 211
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring thioredoxin
as an electron donor, phosphoadenosine phosphosulfate
reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS reductase
is related to a group of plant (TIGR00424) and bacterial
(TIGR02055) enzymes preferring 5'-adenylylsulfate (APS)
over PAPS as a substrate for reduction to sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 226
Score = 138 bits (348), Expect = 2e-38
Identities = 71/233 (30%), Positives = 108/233 (46%), Gaps = 19/233 (8%)
Query: 94 ELENASPLEIMDRALEKFGNDIAI--AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPE 151
+LE +P EI+ ++ F + + AF V L + ++ V +DT P+
Sbjct: 7 QLEKLTPQEIIAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQ 66
Query: 152 TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC-RVRKVRPLRRAL 210
T DE+ K + + D E +A +K E + KV P++RAL
Sbjct: 67 TLTLKDELTKKYYQTLNLYKYDGCESEADFEAK-YGKLLWQKDIEKYDYIAKVEPMQRAL 125
Query: 211 KGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF 268
K L AW TG+R+DQ R+ +PV+++D ++K NP+ + ++ +
Sbjct: 126 KELNASAWFTGRRRDQG-SARANLPVIEID--------EQNGILKVNPLIDWTFEQVYQY 176
Query: 269 LRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 320
L +VP N L QGY SIG TR V G+ ER GRW K K ECG+H
Sbjct: 177 LDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK---GKLKTECGIH 226
>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS)
reductase subfamily; composed of plant-type APS
reductases containing a C-terminal redox active TRX
domain and an N-terminal reductase domain which is part
of a superfamily that includes N type ATP PPases. APS
reductase catalyzes the reduction of activated sulfate
to sulfite, a key step in the biosynthesis of
sulfur-containing metabolites. Sulfate is first
activated by ATP sulfurylase, forming APS, which can be
phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate
(PAPS). Depending on the organism, either APS or PAPS
can be used for sulfate reduction. Prokaryotes and fungi
use PAPS, whereas plants use both APS and PAPS. Since
plant-type APS reductase uses glutathione (GSH) as its
electron donor, the C-terminal domain may function like
glutaredoxin, a GSH-dependent member of the TRX
superfamily. The flow of reducing equivalents goes from
GSH -> C-terminal TRX domain -> N-terminal reductase
domain -> APS. Plant-type APS reductase shows no
homology to that of dissimilatory sulfate-reducing
bacteria, which is an iron-sulfur flavoenzyme. Also
included in the alignment is EYE2 from Chlamydomonas
reinhardtii, a protein required for eyespot assembly.
Length = 109
Score = 66.3 bits (162), Expect = 1e-13
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVID 391
+VTL+R +E LA+ + R + LVVLYAPWC FCQ ++
Sbjct: 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAME 40
>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional.
Length = 636
Score = 52.7 bits (127), Expect = 2e-07
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 35/198 (17%)
Query: 109 EKFGNDIAIAFSGAED--VALIEYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHF 163
EK+ ++++FSG +D V L L + F+ F +TG PET EV + +
Sbjct: 240 EKYNLPVSVSFSGGKDSLVVL----DLAREALKDFKAFFNNTGLEFPETVENVKEVAEEY 295
Query: 164 GIRIEYM-----FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAW 216
GI + F AVE F ++ CC+V K+ P+ RA+K +
Sbjct: 296 GIELIEADAGDAFWRAVEK---------FGPPARDYRWCCKVCKLGPITRAIKENFPKGC 346
Query: 217 IT--GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDV 274
+T GQRK +S +R++ P V +P V + + +P+ + ++W ++ +
Sbjct: 347 LTFVGQRKYES-FSRAKSPRVWRNPW-------VPNQIGASPIQDWTALEVWLYIFWRKL 398
Query: 275 PINSLHSQGYISIGCEPC 292
P N L+ +G+ IGC C
Sbjct: 399 PYNPLYERGFDRIGCWLC 416
>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional.
Length = 479
Score = 50.1 bits (120), Expect = 1e-06
Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 49/238 (20%)
Query: 79 AEKVEGEEDFEQFAKELENASPLEIMDRA--------LEKFGNDIAIAFSGAED--VALI 128
+E GEE ++ + N + L+ +R EK + +A+SG +D L+
Sbjct: 208 SEYGPGEETWKDMVEA--NKNVLDKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLL 265
Query: 129 EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFS 188
G F V DTG PET ++VEKH+G+ I +R+K
Sbjct: 266 LALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEI-------------IRTKSE-E 311
Query: 189 FYEDGHQE---------CCRVRKVRPLRRAL-----KGLRAWITGQRKDQSPGTRSEIPV 234
F+E + C V K+ PL + + +++ GQRK +S RS+ P
Sbjct: 312 FWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGECLSFV-GQRKYES-FNRSKKPR 369
Query: 235 VQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPC 292
+ +P ++ + + P+ + +W +L P N L+ QG+ IGC C
Sbjct: 370 IWRNPY---IKKQILAA----PILHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMC 420
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 50.1 bits (120), Expect = 1e-06
Identities = 57/234 (24%), Positives = 94/234 (40%), Gaps = 45/234 (19%)
Query: 81 KVEGEEDFEQFAKE----LENASPLEIMDRALEKFGND---IAIAFSGAEDVALIEY-AH 132
E ED+ + KE LE S L I+ +EK+ N I +FSG +D ++ A
Sbjct: 144 DFEKIEDYLEKNKERIEKLEENS-LSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAK 202
Query: 133 LTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED 192
V +DTG PET + + K + + ++ + +F+E+
Sbjct: 203 EVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLD-----------TLDGD---NFWEN 248
Query: 193 GHQE---------CCRVRKVRPLRRALKGLRAW-----ITGQRKDQSPGTRSEIPVVQVD 238
+E C K+ PL+ LK I G RK +S TR+ +
Sbjct: 249 LEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYES-FTRANLD----- 302
Query: 239 PVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPC 292
+E G + P+ + DIW+++ D+ N L+ +G+ IGC C
Sbjct: 303 --YERKSGFIDFQTNVFPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLC 354
>gnl|CDD|236300 PRK08576, PRK08576, hypothetical protein; Provisional.
Length = 438
Score = 43.9 bits (104), Expect = 1e-04
Identities = 49/209 (23%), Positives = 82/209 (39%), Gaps = 32/209 (15%)
Query: 97 NASPLEIMDRA----LEKFGN-DIAIAFSGAED--VALIEYAHLTGRPF---RVFSLDTG 146
N LE ++A L KF + + +SG +D AL+ L + F +DTG
Sbjct: 214 NREVLEAFEKASIKFLRKFEEWTVIVPWSGGKDSTAALL----LAKKAFGDVTAVYVDTG 269
Query: 147 RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE-CCRVRKVRP 205
P T + ++V + G+ + V+V + G+ + H C KV
Sbjct: 270 YEMPLTDEYVEKVAEKLGVDLIRA---GVDVPMPIEKYGMPT-----HSNRWCTKLKVEA 321
Query: 206 LRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN 263
L A++ L + G R +S R P PV E LV P+ G
Sbjct: 322 LEEAIRELEDGLLVVGDRDGESA-RRRLRP-----PVVERKTNFGKILVV-MPIKFWSGA 374
Query: 264 DIWNFLRTMDVPINSLHSQGYISIGCEPC 292
+ ++ + +N L+ +G+ +GC C
Sbjct: 375 MVQLYILMNGLELNPLYYKGFYRLGCYIC 403
>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family,
redox active TRX domains; composed of eukaryotic
proteins involved in oxidative protein folding in the
endoplasmic reticulum (ER) by acting as catalysts and
folding assistants. Members of this family include PDI
and PDI-related proteins like ERp72, ERp57 (or ERp60),
ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI,
ERp57, ERp72, P5, PDIR and ERp46 are all oxidases,
catalyzing the formation of disulfide bonds of newly
synthesized polypeptides in the ER. They also exhibit
reductase activity in acting as isomerases to correct
any non-native disulfide bonds, as well as chaperone
activity to prevent protein aggregation and facilitate
the folding of newly synthesized proteins. These
proteins usually contain multiple copies of a redox
active TRX (a) domain containing a CXXC motif, and may
also contain one or more redox inactive TRX-like (b)
domains. Only one a domain is required for the oxidase
function but multiple copies are necessary for the
isomerase function. The different types of PDIs may show
different substrate specificities and tissue-specific
expression, or may be induced by stress. PDIs are in
their reduced form at steady state and are oxidized to
the active form by Ero1, which is localized in the ER
through ERp44. Some members of this family also contain
a DnaJ domain in addition to the redox active a domains;
examples are ERdj5 and Pfj2. Also included in the family
is the redox inactive N-terminal TRX-like domain of
ERp29.
Length = 101
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 355 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
V L +N L + LV YAPWC C+
Sbjct: 1 VELTD---DNFDELVKDSKDVLVEFYAPWCGHCK 31
>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily;
ERdj5, also known as JPDI and macrothioredoxin, is a
protein containing an N-terminal DnaJ domain and four
redox active TRX domains. This subfamily is composed of
the three TRX domains located at the C-terminal half of
the protein. ERdj5 is a ubiquitous protein localized in
the endoplasmic reticulum (ER) and is abundant in
secretory cells. It's transcription is induced during ER
stress. It interacts with BiP through its DnaJ domain in
an ATP-dependent manner. BiP, an ER-resident member of
the Hsp70 chaperone family, functions in ER-associated
degradation and protein translocation. Also included in
the alignment is the single complete TRX domain of an
uncharacterized protein from Tetraodon nigroviridis,
which also contains a DnaJ domain at its N-terminus.
Length = 104
Score = 35.7 bits (83), Expect = 0.006
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
++TL L +R+EPWLV YAPWC CQ
Sbjct: 3 VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQ 35
>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of
eukaryotic proteins similar to human TMX3, a TRX related
transmembrane protein containing one redox active TRX
domain at the N-terminus and a classical ER retrieval
sequence for type I transmembrane proteins at the
C-terminus. The TMX3 transcript is found in a variety of
tissues with the highest levels detected in skeletal
muscle and the heart. In vitro, TMX3 showed oxidase
activity albeit slightly lower than that of protein
disulfide isomerase.
Length = 104
Score = 33.6 bits (77), Expect = 0.038
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 368 LDHRQEP-WLVVLYAPWCQFCQ 388
D R+E WLV YAPWC C+
Sbjct: 10 KDVRKEDIWLVDFYAPWCGHCK 31
>gnl|CDD|235375 PRK05253, PRK05253, sulfate adenylyltransferase subunit 2;
Provisional.
Length = 301
Score = 35.1 bits (82), Expect = 0.054
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 93 KELENASPLEIMDRALEKFGNDIAIAFSGAED----VALIEYAHLTGR-PFRVFSLDTGR 147
+LE S + I+ +F N + +S +D + L A G+ PF + +DTG
Sbjct: 10 DQLEAES-IHILREVAAEFEN-PVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67
Query: 148 LNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPL 206
PE F D K G+ I + P+ + + + + G + K L
Sbjct: 68 KFPEMIEFRDRRAKELGLELIVHSNPEGIA-RGINPFRH-------GSAKHTNAMKTEGL 119
Query: 207 RRAL--KGLRAWITGQRKD 223
++AL G A G R+D
Sbjct: 120 KQALEKYGFDAAFGGARRD 138
>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of
proteins similar to human PDIR (for Protein Disulfide
Isomerase Related). PDIR is composed of three redox
active TRX (a) domains and an N-terminal redox inactive
TRX-like (b) domain. Similar to PDI, it is involved in
oxidative protein folding in the endoplasmic reticulum
(ER) through its isomerase and chaperone activities.
These activities are lower compared to PDI, probably due
to PDIR acting only on a subset of proteins. PDIR is
preferentially expressed in cells actively secreting
proteins and its expression is induced by stress.
Similar to PDI, the isomerase and chaperone activities
of PDIR are independent; CXXC mutants lacking isomerase
activity retain chaperone activity.
Length = 104
Score = 31.9 bits (73), Expect = 0.14
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFC 387
E+ + +++ LV+ YAPWC C
Sbjct: 8 EDFRKFLKKEKHVLVMFYAPWCGHC 32
>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed
of eukaryotic proteins similar to Saccharomyces
cerevisiae MPD1 protein, which contains a single redox
active TRX domain located at the N-terminus, and an ER
retention signal at the C-terminus indicative of an
ER-resident protein. MPD1 has been shown to suppress the
maturation defect of carboxypeptidase Y caused by
deletion of the yeast PDI1 gene. Other characterized
members of this subfamily include the Aspergillus niger
prpA protein and Giardia PDI-1. PrpA is non-essential to
strain viability, however, its transcript level is
induced by heterologous protein expression suggesting a
possible role in oxidative protein folding during high
protein production. Giardia PDI-1 has the ability to
refold scrambled RNase and exhibits transglutaminase
activity.
Length = 109
Score = 31.9 bits (73), Expect = 0.17
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 376 LVVLYAPWCQFCQ 388
LV YAPWC C+
Sbjct: 22 LVEFYAPWCGHCK 34
>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein;
Provisional.
Length = 224
Score = 33.1 bits (75), Expect = 0.17
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 338 AGNASEAVADIFNSQNLVTLNRTGMENL--ARLDHRQEPWLVVLYAPWCQFCQ 388
A A+ D ++ LV LN E L A PW V YAPWC C+
Sbjct: 16 ADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCR 68
>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of
eukaryotic proteins similar to human P5, a PDI-related
protein with a domain structure of aa'b (where a and a'
are redox active TRX domains and b is a redox inactive
TRX-like domain). Like PDI, P5 is located in the
endoplasmic reticulum (ER) and displays both isomerase
and chaperone activities, which are independent of each
other. Compared to PDI, the isomerase and chaperone
activities of P5 are lower. The first cysteine in the
CXXC motif of both redox active domains in P5 is
necessary for isomerase activity. The P5 gene was first
isolated as an amplified gene from a
hydroxyurea-resistant hamster cell line. The zebrafish
P5 homolog has been implicated to play a critical role
in establishing left/right asymmetries in the embryonic
midline. Some members of this subfamily are P5-like
proteins containing only one redox active TRX domain.
Length = 103
Score = 31.1 bits (71), Expect = 0.31
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ WLV YAPWC C+
Sbjct: 18 DDVWLVEFYAPWCGHCK 34
>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of
proteins similar to the TRX-related human transmembrane
protein, TMX. TMX is a type I integral membrane protein;
the N-terminal redox active TRX domain is present in the
endoplasmic reticulum (ER) lumen while the C-terminus is
oriented towards the cytoplasm. It is expressed in many
cell types and its active site motif (CPAC) is unique.
In vitro, TMX reduces interchain disulfides of insulin
and renatures inactive RNase containing incorrect
disulfide bonds. The C. elegans homolog, DPY-11, is
expressed only in the hypodermis and resides in the
cytoplasm. It is required for body and sensory organ
morphogeneis. Another uncharacterized TRX-related
transmembrane protein, human TMX4, is included in the
alignment. The active site sequence of TMX4 is CPSC.
Length = 101
Score = 30.4 bits (69), Expect = 0.51
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 375 WLVVLYAPWCQFCQVID 391
W++ YAPWC CQ +
Sbjct: 19 WMIEFYAPWCPACQQLQ 35
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 31.7 bits (73), Expect = 0.63
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 328 DAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LNRTGMENLARL 368
D +VNG G AGNA+ E + + T ++ + ++R
Sbjct: 220 DGSVNGLGERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRY 262
>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a')
subfamily; composed of the C-terminal redox active a'
domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI,
ERp72 and ERp57 are endoplasmic reticulum (ER)-resident
eukaryotic proteins involved in oxidative protein
folding. They are oxidases, catalyzing the formation of
disulfide bonds of newly synthesized polypeptides in the
ER. They also exhibit reductase activity in acting as
isomerases to correct any non-native disulfide bonds, as
well as chaperone activity to prevent protein
aggregation and facilitate the folding of newly
synthesized proteins. PDI and ERp57 have the abb'a'
domain structure (where a and a' are redox active TRX
domains while b and b' are redox inactive TRX-like
domains). PDI also contains an acidic region (c domain)
after the a' domain that is absent in ERp57. ERp72 has
an additional a domain at the N-terminus (a"abb'a'
domain structure). ERp57 interacts with the lectin
chaperones, calnexin and calreticulin, and specifically
promotes the oxidative folding of glycoproteins, while
PDI shows a wider substrate specificity. ERp72
associates with several ER chaperones and folding
factors to form complexes in the ER that bind nascent
proteins. EFP1 is a binding partner protein of thyroid
oxidase, which is responsible for the generation of
hydrogen peroxide, a crucial substrate of
thyroperoxidase, which functions to iodinate
thyroglobulin and synthesize thyroid hormones.
Length = 104
Score = 29.8 bits (68), Expect = 0.67
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 376 LVVLYAPWCQFCQ 388
LV YAPWC C+
Sbjct: 22 LVEFYAPWCGHCK 34
>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Some members with only the active site are not separated
from the noise.
Length = 104
Score = 29.5 bits (67), Expect = 1.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 373 EPWLVVLYAPWCQFCQVI 390
+P LV YAPWC C+ +
Sbjct: 19 KPVLVDFYAPWCGPCKAL 36
>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain. This model
describes a domain of eukaryotic protein disulfide
isomerases, generally found in two copies. The high
cutoff for total score reflects the expectation of
finding both copies. The domain is similar to
thioredoxin but the redox-active disulfide region motif
is APWCGHCK [Protein fate, Protein folding and
stabilization].
Length = 102
Score = 29.2 bits (66), Expect = 1.4
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 373 EPWLVVLYAPWCQFC 387
+ LV YAPWC C
Sbjct: 14 KDVLVEFYAPWCGHC 28
>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
Length = 619
Score = 30.5 bits (69), Expect = 1.9
Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 9/115 (7%)
Query: 89 EQFAKELENASPLEIMDRALEKFGND----IAIAFSGAEDVALIEYAHLTG--RPFRVFS 142
E F E + A + LEKF N I F + L EY L G + +
Sbjct: 234 ECFDLEGKGAERPMVGSILLEKFKNHFYNGIVTCFKKCHRMYLDEYKPLFGKNKVCVMSI 293
Query: 143 LDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 196
+ N + Y+ +E+ +GI ++ + + E+ L K LF Y E
Sbjct: 294 VHEDLFNFFDKYKTANELFDKYGIHVKTLTIN--ELILLYEKKKLFLNYPWETLE 346
>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate
transaminase.
Length = 817
Score = 30.1 bits (68), Expect = 2.8
Identities = 13/19 (68%), Positives = 13/19 (68%)
Query: 67 VPLAATLATPEVAEKVEGE 85
VPLAATLAT EV E G
Sbjct: 661 VPLAATLATEEVFEAFRGP 679
>gnl|CDD|102374 PRK06434, PRK06434, cystathionine gamma-lyase; Validated.
Length = 384
Score = 29.5 bits (66), Expect = 3.3
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 10/71 (14%)
Query: 106 RALEKFGNDIAIAFS---GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 162
LE + A++FS GA A++ + R+ S+ L +T+ FF++V K
Sbjct: 74 AVLENAEH--ALSFSSGMGAITSAILSLIK---KGKRILSISD--LYGQTFYFFNKVLKT 126
Query: 163 FGIRIEYMFPD 173
GI ++Y+ D
Sbjct: 127 LGIHVDYIDTD 137
>gnl|CDD|226685 COG4232, COG4232, Thiol:disulfide interchange protein
[Posttranslational modification, protein turnover,
chaperones / Energy production and conversion].
Length = 569
Score = 29.6 bits (67), Expect = 3.5
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 366 ARLDHRQEPWLVVLYAPWCQFCQVID 391
A + + +P ++ YA WC C+ +
Sbjct: 468 ALAEAKAKPVMLDFYADWCVTCKENE 493
>gnl|CDD|222442 pfam13899, Thioredoxin_7, Thioredoxin-like. Thioredoxins are small
enzymes that participate in redox reactions, via the
reversible oxidation of an active centre disulfide bond.
Length = 81
Score = 27.3 bits (61), Expect = 4.3
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVID-VFMQ 395
E LA+ +P LV A WC CQ +D F+
Sbjct: 8 EALAKAREEGKPLLVDFGADWCPTCQALDRDFLS 41
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 29.2 bits (65), Expect = 5.3
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 58 AEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKE--LENASPLEIMDRALE 109
A PK L + T E K G+ ++ +E + + SPLE++DR ++
Sbjct: 557 ALPKTAC----LFLSRKTYEALLKEAGQRLSQEEGEEEQVSSTSPLEVLDRLIQ 606
>gnl|CDD|235310 PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB;
Reviewed.
Length = 537
Score = 28.7 bits (65), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 201 RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 241
R RPLR + L W+ + KD+ G R + + ++ P+F
Sbjct: 27 RLTRPLRLWRRSLF-WMPNRHKDKPRGERLRLALEELGPIF 66
>gnl|CDD|218996 pfam06338, ComK, ComK protein. This family consists of several
bacterial ComK proteins. The ComK protein of Bacillus
subtilis positively regulates the transcription of
several late competence genes as well as comK itself. It
has been found that ClpX plays an important role in the
regulation of ComK at the post-transcriptional level.
Length = 162
Score = 27.6 bits (62), Expect = 7.5
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 77 EVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDV 125
+ E +E ++ F K P +I+ R+ +G+ G + +
Sbjct: 29 QYTEIIEVDDTFVSPFK------PFQIIKRSCRFYGSSYEGRKEGTKRI 71
>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum
protein 44 (ERp44)-like subfamily; composed of
uncharacterized PDI-like eukaryotic proteins containing
only one redox active TRX (a) domain with a CXXS motif,
similar to ERp44. CXXS is still a redox active motif;
however, the mixed disulfide formed with the substrate
is more stable than those formed by CXXC motif proteins.
PDI-related proteins are usually involved in the
oxidative protein folding in the ER by acting as
catalysts and folding assistants. ERp44 is involved in
thiol-mediated retention in the ER.
Length = 100
Score = 26.9 bits (60), Expect = 7.7
Identities = 7/28 (25%), Positives = 8/28 (28%), Gaps = 2/28 (7%)
Query: 365 LARLDHRQEP--WLVVLYAPWCQFCQVI 390
L V+ YA WC F
Sbjct: 9 ALDLMAFNREDYTAVLFYASWCPFSASF 36
>gnl|CDD|234950 PRK01390, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 460
Score = 28.3 bits (64), Expect = 7.7
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 86 EDFEQFAKELENASPLEI---MDRALEKFGNDIAIAFSGAEDVAL 127
E E FA L A P EI ++RA+ D A A E V L
Sbjct: 387 EAAEAFAATLGGAVPFEICGTLERAVAAAAAD-AAADGAPEPVVL 430
>gnl|CDD|216767 pfam01890, CbiG_C, Cobalamin synthesis G C-terminus. Members of
this family are involved in cobalamin synthesis. A
Synechocystis sp. PCC 6803 precorrin methylase has been
designated cbiH but in fact represents a fusion between
cbiH and cbiG. As other multi-functional proteins
involved in cobalamin biosynthesis catalyze adjacent
steps in the pathway, including CysG, CobL (CbiET),
CobIJ and CobA-HemD, it is therefore possible that CbiG
catalyzes a reaction step adjacent to CbiH. In the
anaerobic pathway such a step could be the formation of
a gamma lactone, which is thought to help to mediate the
anaerobic ring contraction process. Within the cobalamin
synthesis pathway CbiG catalyzes the both the opening of
the lactone ring and the extrusion of the two-carbon
fragment of cobalt-precorrin-5A from C-20 and its
associated methyl group (deacylation) to give
cobalt-precorrin-5B. This family is the C-terminal
region, and the mid- and N-termival parts are conserved
independently in other families.
Length = 120
Score = 27.0 bits (61), Expect = 8.0
Identities = 11/44 (25%), Positives = 17/44 (38%)
Query: 122 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 165
A++ L+E A G P R FS + + V G+
Sbjct: 44 ADEPGLLELAARLGVPLRFFSAEELAAVERVPTPSEFVFAEVGV 87
>gnl|CDD|181320 PRK08247, PRK08247, cystathionine gamma-synthase; Reviewed.
Length = 366
Score = 28.1 bits (63), Expect = 8.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 152 TYRFFDEVEKHFGIRIEYMFP---DAVEVQALVRSKGLF 187
TYR F+E K + +R Y+ A+E +K +F
Sbjct: 103 TYRLFEEHWKKWNVRFVYVNTASLKAIEQAITPNTKAIF 141
>gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 256
Score = 28.0 bits (63), Expect = 9.2
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 106 RALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRV--FSLDTGRLNPETYRFFDEVEKHF 163
RAL G D+AI ++ L V F D L+ D + +
Sbjct: 20 RALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHE-AMLDAAQAAW 78
Query: 164 G 164
G
Sbjct: 79 G 79
>gnl|CDD|235807 PRK06460, PRK06460, hypothetical protein; Provisional.
Length = 376
Score = 28.3 bits (63), Expect = 9.3
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 97 NASPLEIMDRALEKFGNDIAIAFS---GAEDVALIEYAHLTGRPFRVFSLDT-GRLNPET 152
N + LE+ + +E ++ +AFS GA + + D GR +
Sbjct: 44 NPTVLELTKKIVELENAEMGVAFSSGMGAISTTALALLKPGNSV--LVHRDMFGR----S 97
Query: 153 YRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG 185
YRFF + K++G+ ++ P + + +SK
Sbjct: 98 YRFFTDYLKNWGVNVDASNPGSDNIIEKAKSKR 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,074,828
Number of extensions: 2067309
Number of successful extensions: 2199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2166
Number of HSP's successfully gapped: 61
Length of query: 414
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 315
Effective length of database: 6,546,556
Effective search space: 2062165140
Effective search space used: 2062165140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)