RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015013
(414 letters)
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide
binding, thiosulfonate intermediate, oxidoreductase;
HET: ADX; 2.70A {Pseudomonas aeruginosa}
Length = 275
Score = 306 bits (786), Expect = e-103
Identities = 134/284 (47%), Positives = 187/284 (65%), Gaps = 9/284 (3%)
Query: 53 VRPLNAEPKRNDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFG 112
+ P P + A + + D A L + SP +I+ A E FG
Sbjct: 1 MLPFATIPATE------RNSAAQHQDPSPMSQPFDLPALASSLADKSPQDILKAAFEHFG 54
Query: 113 NDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFP 172
+++ I+FSGAEDV L++ A R +VFSLDTGRL+PETYRF D+V +H+GI I+ + P
Sbjct: 55 DELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSP 114
Query: 173 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEI 232
D ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTRS++
Sbjct: 115 DPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQV 174
Query: 233 PVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPC 292
V+++D F E + K+NP++++ ++W ++R +++P NSLH +GYISIGCEPC
Sbjct: 175 AVLEIDGAFSTPEKPL---YKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPC 231
Query: 293 TRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGN 336
TRPVLP QHEREGRWWWE+A KECGLH GN+ + + + +
Sbjct: 232 TRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALEHHHHHH 275
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked
complex, oxidoreductase; 3.00A {Escherichia coli}
Length = 252
Score = 296 bits (759), Expect = 1e-99
Identities = 66/261 (25%), Positives = 110/261 (42%), Gaps = 21/261 (8%)
Query: 65 SVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAE 123
S + L A P+V + ELE + AL+ + ++ S G +
Sbjct: 2 SKLDLNALNELPKVDR----ILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQ 57
Query: 124 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 58 AAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARY 117
Query: 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 241
L+ +G ++ + KV P+ RALK L + W G R++QS +R+ +PV+ +
Sbjct: 118 GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQR-- 174
Query: 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQH 301
+ K P+ + I+ +L+ + + L +GY+S+G TR PG
Sbjct: 175 --------GVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMA 226
Query: 302 EREGRWWWEDAKAKECGLHKG 322
E E R++ +ECGLH+G
Sbjct: 227 EEETRFFGL---KRECGLHEG 244
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS
reductase, oxidoreductase; HET: A3P; 2.10A
{Saccharomyces cerevisiae}
Length = 261
Score = 259 bits (662), Expect = 5e-85
Identities = 64/249 (25%), Positives = 108/249 (43%), Gaps = 21/249 (8%)
Query: 85 EEDFEQFAKELEN-ASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAH---LTGRPFRV 140
+E + + ++L +P EI+ ++ F + G + I+ +
Sbjct: 14 QEQLDHWNEQLIKLETPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPEL 73
Query: 141 FSLDTGRLNPETYRFFDEVEKHFG----IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 196
+DT P+T +E+EK + I PD E +A SK +E +
Sbjct: 74 LFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDK 133
Query: 197 CCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 254
+ KV P RA K + A TG+RK Q RS++ ++++D + ++K
Sbjct: 134 YDYLAKVEPAHRAYKELHISAVFTGRRKSQGS-ARSQLSIIEIDEL--------NGILKI 184
Query: 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKA 314
NP+ N + ++ +VP N L GY SIG T+PV G+ ER GRW +
Sbjct: 185 NPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKA--K 242
Query: 315 KECGLHKGN 323
ECG+H+ +
Sbjct: 243 TECGIHEAS 251
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 247 bits (632), Expect = 5e-81
Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 18/228 (7%)
Query: 65 SVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAE 123
S + L A P+V + ELE + AL+ + ++ S G +
Sbjct: 1 SKLDLNALNELPKVDR----ILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQ 56
Query: 124 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 57 AAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARY 116
Query: 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVF 241
L+ +G ++ + KV P+ RALK L + W G R++QS +R+ +PV+ +
Sbjct: 117 GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ--- 172
Query: 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 289
+ K P+ + I+ +L+ + + L +GY+S+G
Sbjct: 173 -------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase,
nucleotide-binding; HET: FAD; 1.90A {Saccharomyces
cerevisiae}
Length = 306
Score = 172 bits (436), Expect = 8e-51
Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 22/274 (8%)
Query: 83 EGEEDFEQFAKELENASPLEIMDRALEKFG---NDIAIAFSGAED--VALIEYAHLTGRP 137
+ + +E + ++ ++ +I+ +++G +D V L+ Y
Sbjct: 21 DQKSQIIASTQEAIRLTRKYLLSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEY 80
Query: 138 FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC 197
F + + ++ + F I E FP + S YE Q
Sbjct: 81 FFIKAQNSQFDFEFQSFPMQRLPTVF-IDQEETFPTLENFVLETSERYCLSLYESQRQSG 139
Query: 198 CRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW 254
V R +K A + G R P + P+ + D ++
Sbjct: 140 ASVNMADAFRDFIKIYPETEAIVIGIRHTD-PFGEALKPIQRTDS-------NWPDFMRL 191
Query: 255 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP-----VLPGQHEREGRWWW 309
P+ + +IW+FL + PI L+ +G+ SIG + P W
Sbjct: 192 QPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNPHLRKDSNNPALHFEWEI 251
Query: 310 EDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 343
A K+ + + + +
Sbjct: 252 IHAFGKDAEGERSSAINTSPISVVDKERFSKYHD 285
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 158 bits (400), Expect = 2e-45
Identities = 38/292 (13%), Positives = 84/292 (28%), Gaps = 19/292 (6%)
Query: 65 SVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFG---NDIAIAFSG 121
L L + + E + + N + +++ K+ +I+ +++G
Sbjct: 9 DAAELCYNLTSSYLQIAAESDS-IIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNG 67
Query: 122 AED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-VQA 179
+D L+ + + L + + + +RF I + F ++
Sbjct: 68 GKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEE 127
Query: 180 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP 239
L + D + + +A + G R P P+ + D
Sbjct: 128 TSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTD-PFGEHLKPIQKTDA 186
Query: 240 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP---- 295
+ P+ + +IW+FL + PI L+ G+ S+G T P
Sbjct: 187 -------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHL 239
Query: 296 -VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVA 346
+ + WE + A + +
Sbjct: 240 RKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPG 291
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain,
heterodimer, pyrophosphate, G protein; HET: GDP AGS;
2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 62.1 bits (150), Expect = 8e-11
Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 34/224 (15%)
Query: 93 KELENASPLEIMDRALEKFGNDIAIAFSGAED----VALIEYAHLTGR-PFRVFSLDTGR 147
K+LE S + I+ +F N + +S +D + L A G+ PF V +DT
Sbjct: 29 KQLEAES-IHIIREVAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 86
Query: 148 LNPETYRFFDEVEKHFGIRIEYMF-PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPL 206
E YRF D++ + G+ + PD V +G+ F G + + K L
Sbjct: 87 KFQEMYRFRDQMVEEMGLDLITHINPDGVA-------QGINPF-THGSAKHTDIMKTEGL 138
Query: 207 RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN--------- 255
++AL G A G R+D+ +R++ V + WN
Sbjct: 139 KQALDKHGFDAAFGGARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKG 197
Query: 256 ------PVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT 293
P++N DIW ++ +PI L+ + + T
Sbjct: 198 ESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGT 241
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.8 bits (136), Expect = 7e-09
Identities = 58/356 (16%), Positives = 98/356 (27%), Gaps = 94/356 (26%)
Query: 87 DFEQFAKELENASPLEIMDRALEKFGNDIAI---------AFSGAEDVALIEYAHLTGRP 137
DFE + + L + + F ++ S E +I
Sbjct: 8 DFETGEHQYQYKDILSVF---EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 138 FRVFSLDTGRLNPET--YRFFDEV-EKHFG-----IRIEYMFPDAV------EVQALVRS 183
R+F T E +F +EV ++ I+ E P + + L
Sbjct: 65 LRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEG 243
+F+ Y R++ LR+AL LR P V + +G
Sbjct: 123 NQVFAKYN-----VSRLQPYLKLRQALLELR------------------PAKNV--LIDG 157
Query: 244 LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHER 303
+ G G K +V + MD I ++++ VL
Sbjct: 158 V-LGSG---KTWVALDVCLSY--KVQCKMDFKIF------WLNLKNCNSPETVLEML--- 202
Query: 304 EGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGME 363
+ + D H NIK + + + S+
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLR----------IHSIQAELRRLLKSKPYE-------N 245
Query: 364 NLARLDHRQEPWLVVLYAPWCQ------FCQVIDVFMQIRFQIIALV---MGFKPE 410
L L + Q + C+ F QV D I+L M P+
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 32.9 bits (74), Expect = 0.26
Identities = 41/252 (16%), Positives = 65/252 (25%), Gaps = 93/252 (36%)
Query: 85 EEDFEQFAKELENASPLE---------IMDRALEKFGNDIAIAFSGAEDVAL----IE-Y 130
+ D +L S +E I LE + + AL ++ Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-------LKVKLENEYALHRSIVDHY 453
Query: 131 AHLTGRPFRVFSLDTGRLNPE-TYRFFDEVEKHFGIRIEY--MFPDAVEVQALVRSKGL- 186
+ F D Y + H G + + E L R L
Sbjct: 454 -----NIPKTFDSDDLIPPYLDQYFYS-----HIG----HHLKNIEHPERMTLFRMVFLD 499
Query: 187 FSFYE-----DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVF 241
F F E D + + LK + +I DP +
Sbjct: 500 FRFLEQKIRHDSTAWNAS-GSILNTLQQLKFYKPYICDN-----------------DPKY 541
Query: 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV-LPGQ 300
E L N I +FL ++ N + S T + +
Sbjct: 542 ERLV-----------------NAILDFLPKIEE--NLICS---------KYTDLLRIALM 573
Query: 301 HEREGRWWWEDA 312
E E +E+A
Sbjct: 574 AEDEA--IFEEA 583
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 7e-08
Identities = 80/477 (16%), Positives = 126/477 (26%), Gaps = 200/477 (41%)
Query: 9 NSISSSSFALTSSSNDIKVSQIGSFR---LVDRAHVASTSL----SQRRSLVRPLNAEPK 61
++ S+ L+ GS LV T+ SQ +
Sbjct: 2 DAYSTRPLTLSH----------GSLEHVLLV------PTASFFIASQLQ----------- 34
Query: 62 RNDSVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDR--------------- 106
+ L P E FA + E +P E++ +
Sbjct: 35 --EQ---FNKILPEPT-----------EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 107 --------ALEKF------GNDI---AIAFSGAEDVALIE--------YA--HLTGRP-- 137
L +F GNDI A D L++ + RP
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 138 -------FRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEY-MFPDAVEVQALV 181
FR +L N + Y F+E +R Y + V L+
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--FEE------LRDLYQTYHVLVG--DLI 188
Query: 182 R--SKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTR--SEIPV- 234
+ ++ L KV +GL W+ +P IP+
Sbjct: 189 KFSAETLSELIRTTL----DAEKVFT-----QGLNILEWLEN--PSNTPDKDYLLSIPIS 237
Query: 235 ------VQ------------VDP-----VFEGLEGGVGSLVKWNPVAN-VKGNDIW-NFL 269
+Q P +G G LV A + D W +F
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIAETDSWESFF 293
Query: 270 RTMDVPINSLHSQGYISIGCEPCTR--PVL---PGQHEREGRWWWEDAKAKECG-----L 319
++ I L IG C P P ED+ G L
Sbjct: 294 VSVRKAITVL-----FFIGVR-CYEAYPNTSLPPSIL--------EDSLENNEGVPSPML 339
Query: 320 H-KG-NIKQEDAAVNG-NGNGAGNASEAVADIFNS-QNLVTLNRTGM-ENLARLDHR 371
+Q VN N + ++ + N +NLV +G ++L L+
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVV---SGPPQSLYGLNLT 392
Score = 42.0 bits (98), Expect = 4e-04
Identities = 41/271 (15%), Positives = 74/271 (27%), Gaps = 105/271 (38%)
Query: 93 KELENASPL--EIMDRA----LEKFGNDI-----------AIAFSGAEDVALIE-YAHLT 134
+L S ++ +RA + +G I I F G + + E Y+ +
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 135 GRPFR--------------------VFSLDTGRLNPET-----------YRFFDEVEKHF 163
F + G L+ T F++++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-ATQFTQPALTLMEKAAFEDLKSKG 1751
Query: 164 GIRIEYMFPDA---V-EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITG 219
I + F A + E AL + S E V V R
Sbjct: 1752 LIPADATF--AGHSLGEYAALASLADVMSI-ESL------VEVVF--------YRGMTMQ 1794
Query: 220 QRKDQSPGTRSEIPVVQVDP--------------VFEGLEGGVGSLVKWNPVAN------ 259
+ RS ++ ++P V E + G LV+ + N
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE---IVNYNVENQ 1851
Query: 260 ---VKGN--------DIWNFLRTMDVPINSL 279
G+ ++ NF++ + I L
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 36.6 bits (85), Expect = 0.004
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 338 AGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
+G++ + ++ + LN N ++ L+ YAPWC C+
Sbjct: 3 SGSSGDDDLEVKEENGVWVLND---GNFDNFVADKDTVLLEFYAPWCGHCK 50
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 37.5 bits (86), Expect = 0.006
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
+++ L E+ LV +APWC +
Sbjct: 2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAK 37
Score = 32.1 bits (72), Expect = 0.39
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ L+ YAPWC C+
Sbjct: 370 NKDVLIEFYAPWCGHCK 386
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 37.5 bits (86), Expect = 0.007
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 342 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
EAVA +V L ++ + L +APWC C+
Sbjct: 6 QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCK 47
Score = 32.5 bits (73), Expect = 0.29
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 373 EPWLVVLYAPWCQFCQ 388
+ LV+ YAPWC C+
Sbjct: 377 KDVLVLYYAPWCGHCK 392
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 35.4 bits (82), Expect = 0.009
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 337 GAGNASEAVADIFNSQ-NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
G+ +S AV+ +++S +++ L + WLV YAPWC CQ
Sbjct: 1 GSSGSSGAVSGLYSSSDDVIELTPSNFNREVIQSD--GLWLVEFYAPWCGHCQ 51
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 36.4 bits (84), Expect = 0.009
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 342 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
SE ++ ++ LN N ++ L+ YAPWC C+
Sbjct: 5 SEDDLEVKEENGVLVLND---ANFDNFVADKDTVLLEFYAPWCGHCK 48
Score = 29.0 bits (65), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQ 388
EN + + + LV YAPWC C+
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCK 163
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 36.7 bits (84), Expect = 0.015
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 369 DHRQEPWLVVLYAPWCQFCQ 388
+EPWLV +APW +
Sbjct: 452 ASDKEPWLVDFFAPWSPPSR 471
Score = 32.0 bits (72), Expect = 0.45
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
++V+L + L + E W+V Y+PW Q
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQ 579
Score = 30.9 bits (69), Expect = 0.85
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ W+V YAPW Q
Sbjct: 675 KTHWVVDFYAPWSGPSQ 691
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 33.8 bits (78), Expect = 0.019
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ + YAPWC C+
Sbjct: 21 EGITFIKFYAPWCGHCK 37
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 35.8 bits (81), Expect = 0.026
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
++V L+ + R PW+V+ Y C C+
Sbjct: 24 SVVDLSGDDFSRVHR-VAPLCPWIVLFYNDGCGACR 58
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 35.3 bits (81), Expect = 0.029
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQ 388
EN+ + + + LV YA WC+F Q
Sbjct: 13 ENIDEILNNADVALVNFYADWCRFSQ 38
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 35.4 bits (81), Expect = 0.031
Identities = 2/17 (11%), Positives = 5/17 (29%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ L + Y +
Sbjct: 27 KYDVLCLYYHESVSSDK 43
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 33.0 bits (76), Expect = 0.047
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 373 EPWLVVLYAPWCQFCQ 388
+ LV YAPWC C+
Sbjct: 25 KYLLVEFYAPWCGHCK 40
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 34.5 bits (80), Expect = 0.057
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 20/67 (29%)
Query: 130 YAHLTGRPFRVFSLDTGRL-----------NPETYRFFDEVEKHFGIRIEYM-FPDAVEV 177
Y H GR TGR + +++ + ++++F I + D E+
Sbjct: 447 YLHRIGR--------TGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDDYEEL 498
Query: 178 QALVRSK 184
+ +V++
Sbjct: 499 EKVVKNA 505
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 32.7 bits (75), Expect = 0.077
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
+ W++ YAPWC CQ
Sbjct: 22 EGDWMIEFYAPWCPACQ 38
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 33.4 bits (76), Expect = 0.084
Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 341 ASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
S A S L L + W V +A WC C
Sbjct: 1 GSHMSALYSPSDPLTLLQADTVRGAVLGSR--SAWAVEFFASWCGHCI 46
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 32.4 bits (74), Expect = 0.087
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 374 PWLVVLYAPWCQFCQ 388
L+ YAPWC C+
Sbjct: 27 DVLIEFYAPWCGHCK 41
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 34.2 bits (77), Expect = 0.089
Identities = 5/17 (29%), Positives = 6/17 (35%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
W V +A WC
Sbjct: 30 SSAWAVEFFASWCGHAI 46
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 33.6 bits (76), Expect = 0.094
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
LV YAPWC C+
Sbjct: 35 NYTSLVEFYAPWCGHCK 51
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 31.9 bits (73), Expect = 0.10
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 372 QEPWLVVLYAPWCQFCQVI 390
+ W+V YAPWC CQ
Sbjct: 21 KTHWVVDFYAPWCGPCQNF 39
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 32.0 bits (73), Expect = 0.14
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
++ W+V YAPWC C+
Sbjct: 25 EDVWMVEFYAPWCGHCK 41
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 31.5 bits (72), Expect = 0.18
Identities = 4/15 (26%), Positives = 6/15 (40%)
Query: 374 PWLVVLYAPWCQFCQ 388
V+ Y PW +
Sbjct: 35 DVFVLYYVPWSRHSV 49
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 31.6 bits (72), Expect = 0.20
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 374 PWLVVLYAPWCQFCQ 388
L+ YAPWC C+
Sbjct: 27 DVLIEFYAPWCGHCK 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.45
Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 25/132 (18%)
Query: 127 LIEY--AHLTGRPFRV-FSLDTGRLNPET---YRFFDEVEKHFGIRI---EYMFPDAVEV 177
I Y +L GRP+ T + ++ + +H GIR+ E E
Sbjct: 860 FISYHNGNLKGRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEK 919
Query: 178 QALVRSKGL---FSFYE----------DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQ 224
+ +++ + +E H + + ++ L T
Sbjct: 920 KEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKA 979
Query: 225 SPGTRS---EIP 233
R +IP
Sbjct: 980 LRFDRLVAGQIP 991
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 31.1 bits (70), Expect = 0.57
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQ 388
+N + + E ++ + P
Sbjct: 21 KNYKNVFKKYEVLALLYHEPPEDDKA 46
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 30.6 bits (69), Expect = 0.60
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 1/64 (1%)
Query: 328 DAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQF 386
+ + N G + F + T + E W V Y+P C
Sbjct: 69 EKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSH 128
Query: 387 CQVI 390
C +
Sbjct: 129 CHDL 132
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 31.0 bits (71), Expect = 0.65
Identities = 3/34 (8%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYMFP-DAVEVQALVRSK 184
+ F ++ G+ + P ++ ++
Sbjct: 134 SQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPN 167
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 31.0 bits (71), Expect = 0.80
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 152 TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK 184
T+R+F +V G+ + ++ L++
Sbjct: 106 THRYFTKVANAHGVETSFTNDLLNDLPQLIKEN 138
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine
phosphonate; HET: IN5; 1.60A {Geobacillus
stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A*
2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A*
1ftx_A* 3uw6_A
Length = 388
Score = 30.5 bits (70), Expect = 1.1
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 97 NASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRV-FSLDTG--RL----N 149
AS A + IA+ ++ + + P +DTG RL
Sbjct: 86 GASRPADAALAAQ---QRIALTVFRSDWLEEASALYSGPFPIHFHLKMDTGMGRLGVKDE 142
Query: 150 PETYRFFDEVEKHFGIRIEYMF 171
ET R +E+H +E ++
Sbjct: 143 EETKRIVALIERHPHFVLEGLY 164
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 68 PLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEK 110
PL LA D E F ++++ S E R +E+
Sbjct: 63 PLVPVLACIGERLGNACYSDVENFVEKMKKMSTRE---RTMEE 102
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 29.2 bits (65), Expect = 1.1
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 352 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
N+ L T + ++E + C +C+
Sbjct: 9 DNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCR 45
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 29.0 bits (65), Expect = 1.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 374 PWLVVLYAPWCQFCQVI 390
W+V +A W CQ
Sbjct: 28 TWIVEFFANWSNDCQSF 44
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 30.2 bits (69), Expect = 1.4
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
+YR FD + K R+ ++ D ++A + K
Sbjct: 104 SYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEK 137
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 29.3 bits (65), Expect = 1.6
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 374 PWLVVLYAPWCQFCQVID 391
P +V+++ WC C+ +
Sbjct: 48 PLMVIIHKSWCGACKALK 65
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 29.7 bits (66), Expect = 1.6
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 372 QEPWLVVLYAPWCQFCQ 388
++ V YAPWC C+
Sbjct: 267 KKNVFVEFYAPWCGHCK 283
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 29.6 bits (67), Expect = 1.9
Identities = 6/34 (17%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
+ R +V G+ ++ + EV A + +
Sbjct: 184 SDRLLSQVVPRSGVVVKRVNTTKLDEVAAAIGPQ 217
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.9
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 22/51 (43%)
Query: 80 EKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFSGAEDV-ALIE 129
EK Q K+L+ +L+ + +D A A + + A +E
Sbjct: 18 EK--------QALKKLQA---------SLKLYADDSAPALA----IKATME 47
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 29.5 bits (66), Expect = 2.1
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 148 LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLR 207
L PE F E+ ++F R + ++ Q + + F E+ + + L
Sbjct: 21 LTPEALSFLKELHENFNERRIELLQKRMKKQQKIDAGEFPKFLEETKRIREADWTIAKLP 80
Query: 208 RALKGLRAWITG 219
+ L+ R ITG
Sbjct: 81 KDLEDRRVEITG 92
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T R+F +V FG++I ++ ++A + +
Sbjct: 118 TNRYFRQVASEFGLKISFVDCSKIKLLEAAITPE 151
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 29.5 bits (66), Expect = 2.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 67 VPLAATLATPEVAEKVEGEEDFEQF 91
VPLA TLAT V + G+ +
Sbjct: 671 VPLAVTLATDAVFDSFSGDSKLKAL 695
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 28.2 bits (63), Expect = 2.4
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 364 NLARLDHRQEPWLVVLYAPWCQFCQVID 391
N A ++ + +P ++ LYA WC C+ +
Sbjct: 23 NQALVEAKGKPVMLDLYADWCVACKEFE 50
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 29.4 bits (67), Expect = 2.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T+R D+V + + + D V+A +R
Sbjct: 118 TFRLIDKVFTGWNVEYTPVALADLDAVRAAIRPT 151
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 29.0 bits (66), Expect = 3.0
Identities = 4/34 (11%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T+ F+ + FG+ ++++ ++ ++
Sbjct: 50 THALFEHQLRKFGVEVDFIDMAVPGNIEKHLKPN 83
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 28.1 bits (62), Expect = 3.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 374 PWLVVLYAPWCQFCQVID 391
P +V+ + CQ+ Q +
Sbjct: 46 PLMVIHHLEDCQYSQALK 63
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 28.7 bits (65), Expect = 3.8
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T+ F FG+++ ++ D ++A +
Sbjct: 117 TFAFLHHGIGEFGVKLRHVDMADLQALEAAMTPA 150
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 28.3 bits (64), Expect = 4.5
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T+ F+ FGI+++++ EV+ ++
Sbjct: 114 THALFEHALTKFGIQVDFINTAIPGEVKKHMKPN 147
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 28.3 bits (64), Expect = 4.6
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T F FGI ++ + D +V+A +
Sbjct: 111 TVSLFTHWLPRFGIEVDLIDTSDVEKVKAAWKPN 144
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 28.4 bits (63), Expect = 4.8
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 140 VFSLDTGRLNPETYRFFDEVEKHFGIRIE 168
+L G N + K + + +
Sbjct: 386 TLNLSIGFGNLINPHPKNSQSKEYALLLI 414
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 28.0 bits (62), Expect = 4.8
Identities = 2/14 (14%), Positives = 4/14 (28%)
Query: 375 WLVVLYAPWCQFCQ 388
LV + +
Sbjct: 25 VLVKFDTQYPYGEK 38
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 28.0 bits (63), Expect = 5.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 326 QEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT 356
+ DA++ G G GAGNA E +
Sbjct: 222 RVDASLAGMGAGAGNAPLEVFIAVAERLGWNH 253
>3byq_A Uncharacterized protein DUF1185; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE PG4; 1.70A {Bordetella bronchiseptica
RB50} SCOP: d.79.9.1
Length = 193
Score = 27.6 bits (61), Expect = 5.8
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 194 HQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD 238
H +R L +A + + + G R +PV +
Sbjct: 94 HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIH 138
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Bacteroides vulgatus atcc 8482}
Length = 320
Score = 28.1 bits (63), Expect = 5.9
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 328 DAAVNGNGNGAGNAS-EAVADIFNSQNLVTLNRTGMENLAR 367
DA + G G GAGN E + N + + ++ + N+
Sbjct: 216 DATITGMGRGAGNLKMELLLTYLNKHHGLNVDFNVLGNIIT 256
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 26.9 bits (60), Expect = 6.4
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 374 PWLVVLYAPWCQFCQVID--VFMQIRFQ 399
+V ++ C +CQ ++ V
Sbjct: 21 MVMVYFHSEHCPYCQQMNTFVLSDPGVS 48
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix,
two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Length = 236
Score = 27.7 bits (61), Expect = 6.9
Identities = 22/139 (15%), Positives = 31/139 (22%), Gaps = 34/139 (24%)
Query: 87 DFEQFAKELENASPLE----IMDRALEKFGND-IAIAFSGAEDVAL-------------- 127
+ LE A + G D A V
Sbjct: 6 NLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWESIYLG 65
Query: 128 ---------IEYAHLTGRPFRVFSLDT-GRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV 177
+ A F + R + RF DE H GIR P V
Sbjct: 66 SDYFNIDPVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISH-GIRCGVTIP----V 120
Query: 178 QALVRSKGLFSFYEDGHQE 196
+ S + +F +
Sbjct: 121 EGSYGSAMMLTFASPERKV 139
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 27.1 bits (60), Expect = 7.3
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 372 QEPWLVVLYAPWCQFCQVI 390
Q ++ +Y+ C C
Sbjct: 31 QGDAILAVYSKTCPHCHRD 49
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 27.9 bits (63), Expect = 7.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 67 VPLAATLATPEVAEKVEGEE 86
+ LAATL T +VA +
Sbjct: 310 LSLAATLCTADVAHTISAGA 329
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical
protein from thermus therm HB8, MAD; 1.70A {Thermus
thermophilus} SCOP: d.58.50.1
Length = 102
Score = 26.3 bits (58), Expect = 7.6
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 30 IGSFRLVDRAHVASTSLSQRRSLVRPLNAEPKR--NDSVVPLA-------ATLATPEVA- 79
+G + R + SL ++R+L++P K S L + +
Sbjct: 5 LGLYTA--RLETPARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGN 62
Query: 80 EKVEGEEDFEQFAKELENASPLEI--MDRALEKFGND 114
+ EE A+ L A ++ + LE F D
Sbjct: 63 DPAWVEETMRAAARFLAEAGGFQVALEEFRLEAFELD 99
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 27.5 bits (62), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 67 VPLAATLATPEVAEKVEGEE 86
+ L+ATL T EVAE + E
Sbjct: 281 MTLSATLTTREVAETISNGE 300
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 27.5 bits (62), Expect = 8.5
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 152 TYRFFDEVEKHFGIRIEYM-FPDAVEVQALVRSK 184
T+ F FGI + ++ E++A +R +
Sbjct: 116 THAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPE 149
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,388,624
Number of extensions: 396992
Number of successful extensions: 1319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 87
Length of query: 414
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 318
Effective length of database: 4,021,377
Effective search space: 1278797886
Effective search space used: 1278797886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.4 bits)