RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015013
(414 letters)
>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase
{Escherichia coli [TaxId: 562]}
Length = 215
Score = 169 bits (429), Expect = 3e-51
Identities = 55/228 (24%), Positives = 94/228 (41%), Gaps = 18/228 (7%)
Query: 65 SVVPLAATLATPEVAEKVEGEEDFEQFAKELENASPLEIMDRALEKFGNDIAIAFS-GAE 123
S + L A P KV+ + ELE + AL+ + ++ S G +
Sbjct: 1 SKLDLNALNELP----KVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQ 56
Query: 124 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS 183
+ + V DTG L PETYRF DE+ + ++ R
Sbjct: 57 AAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARY 116
Query: 184 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVF 241
L+ +G ++ + KV P+ RALK L A W G R++QS +R+ +PV+ +
Sbjct: 117 GKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ--- 172
Query: 242 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGC 289
+ K P+ + I+ +L+ + + L +GY+S+G
Sbjct: 173 -------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGD 213
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2,
CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 211
Score = 107 bits (268), Expect = 5e-28
Identities = 39/203 (19%), Positives = 71/203 (34%), Gaps = 18/203 (8%)
Query: 93 KELENASPLEIMDRALEKFGNDIAIAFSGAEDVALIEYAHLTG-----RPFRVFSLDTGR 147
K+LE A + I+ +F N + +S +D A++ + PF V +DT
Sbjct: 9 KQLE-AESIHIIREVAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66
Query: 148 LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRP 205
E YRF D++ + G+ + Q + + + D + +
Sbjct: 67 KFQEMYRFRDQMVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHG 126
Query: 206 LRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG--------GVGSLVKWNPV 257
A G R R + + DP + E G ++ P+
Sbjct: 127 FDAAFGGARRDEEKSRAKE-RVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPL 185
Query: 258 ANVKGNDIWNFLRTMDVPINSLH 280
+N DIW ++ +PI L+
Sbjct: 186 SNWTELDIWQYIYLEGIPIVPLY 208
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 34.5 bits (78), Expect = 0.004
Identities = 6/49 (12%), Positives = 14/49 (28%)
Query: 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399
N+ L T + ++E + C +C+ +
Sbjct: 5 LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVA 53
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal
domain {Propionibacterium freudenreichii shermanii
[TaxId: 1752]}
Length = 303
Score = 32.2 bits (72), Expect = 0.11
Identities = 35/284 (12%), Positives = 81/284 (28%), Gaps = 16/284 (5%)
Query: 93 KELENASP--LEIMDRAL-EKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLN 149
+E+E + P + I + L + + +A + + V G + G
Sbjct: 1 REIEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAG--YWSVECWGGATY 58
Query: 150 PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRA 209
RF +E + P++ +Q L+R + L Y + E +
Sbjct: 59 DSCIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLG-YRHYNDEVVDRFVDKSAENG 116
Query: 210 LKGLRAWITGQRKDQSPGTRSEIPVV--QVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN 267
+ R + + + V ++ + +A + +
Sbjct: 117 MDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGAD 176
Query: 268 FLRTMDVPINSLHSQGYISIG--CEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK 325
+ D+ Y I + + H + + +
Sbjct: 177 SIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGV---TEVSLMKAIEAGVD 233
Query: 326 QEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LNRTGMENLAR 367
D A++ G G+ E+VA++ T L+ + +
Sbjct: 234 VVDTAISSMSLGPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRD 277
>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA,
catalytic domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 310
Score = 31.1 bits (69), Expect = 0.23
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 5/70 (7%)
Query: 301 HEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNAS-EAVADIFNSQNLVT-LN 358
H R + + + GNG GN + S+ + ++
Sbjct: 225 HPHNDRGTAVA---AAELGFAAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQID 281
Query: 359 RTGMENLARL 368
+ ++ + R
Sbjct: 282 FSNIDEIRRT 291
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 30.5 bits (69), Expect = 0.24
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 165 IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQ 224
++ + D +EV + G+ E H +R L +A + +
Sbjct: 65 ELVDTLGKDNIEVYSKAAIVGVDGEME--HGAVWHEAGGWAMRSVLGEPKAMVPAVKAVA 122
Query: 225 SPGTRSEIPVVQVD 238
+ G R +PV +
Sbjct: 123 TAGYRMMVPVHYIH 136
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 29.4 bits (65), Expect = 0.33
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399
+++ L + N A + LV YAPWC C+ +
Sbjct: 8 HVLVLRK---SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAG 51
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 29.3 bits (65), Expect = 0.35
Identities = 4/36 (11%), Positives = 9/36 (25%), Gaps = 3/36 (8%)
Query: 353 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
V L+ + + R +V +
Sbjct: 3 GCVDLD---ELSFEKTVERFPYSVVKFDIASPYGEK 35
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 28.2 bits (62), Expect = 0.67
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 351 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQ 395
S+ ++T+ E+ + ++P LV +A WC CQ++ +
Sbjct: 1 SKGVITITDAEFESE--VLKAEQPVLVYFWASWCGPCQLMSPLIN 43
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 28.5 bits (63), Expect = 0.71
Identities = 3/38 (7%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 350 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFC 387
+++ + L+ ++ + + LV +
Sbjct: 2 HTKGALPLD---TVTFYKVIPKSKFVLVKFDTQYPYGE 36
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 26.8 bits (58), Expect = 1.3
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 376 LVVLYAPWCQFCQVIDVFMQIRFQ 399
+ + +P C C ++
Sbjct: 6 IELFTSPMCPHCPAAKRVVEEVAN 29
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 27.5 bits (60), Expect = 1.3
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQIIALVMGF 407
LA+ +P +V A WC C++I + A + F
Sbjct: 15 AQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIF 59
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 27.0 bits (59), Expect = 1.8
Identities = 4/28 (14%), Positives = 13/28 (46%)
Query: 372 QEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399
+P ++ ++ WC C+ + + +
Sbjct: 25 DKPVVLDMFTQWCGPCKAMAPKYEKLAE 52
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 27.2 bits (59), Expect = 2.0
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 369 DHRQEPWLVVLYAPWCQFCQ 388
++P L+ ++ C C+
Sbjct: 26 LIGEKPTLIHFWSISCHLCK 45
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 26.6 bits (58), Expect = 2.2
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 362 MENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQ 395
+E + +D + Y+ C C + +
Sbjct: 7 LEQIRDID--GDFEFETYYSLSCHNCPDVVQALN 38
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 27.9 bits (61), Expect = 2.3
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 102 EIMDRALEKFGNDIAIA---FSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFD 157
E+ + + I F G + ++ + TG+ R L+ G L D
Sbjct: 399 EVCEGYVYN-SIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTEA---ELD 454
Query: 158 EV 159
++
Sbjct: 455 DI 456
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 28.2 bits (62), Expect = 2.4
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 117 IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEV 159
I + A VA + AH G + +L+ G L + FDE
Sbjct: 415 IGYDAASKVA--KNAHKKGITLKESALELGVLTEKE---FDEW 452
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 27.9 bits (61), Expect = 2.4
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 152 TYRFFDEVEKHFGIRIEYMFP 172
T+ F+ + FG+ ++++
Sbjct: 50 THALFEHQLRKFGVEVDFIDM 70
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 26.7 bits (58), Expect = 2.4
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399
E L + + + +V A WC C+ I F +
Sbjct: 19 EQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK 55
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 26.7 bits (58), Expect = 2.5
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQV 389
+N + + E ++ + P
Sbjct: 19 KNYKNVFKKYEVLALLYHEPPEDDKAS 45
>d3eeqa1 c.151.1.1 (A:215-335) Cobalamin biosynthesis protein G,
CbiG {Sulfolobus solfataricus [TaxId: 2287]}
Length = 121
Score = 26.7 bits (59), Expect = 2.7
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 97 NASPLEIMD---RALEKFGNDI-AIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPET 152
+ EI D + LE+ I + + + A FR+ + +
Sbjct: 11 DVKMEEIRDGIYKVLERLNLKRERIGIIASIREEVKKIADEFNVRFRLVNEEEINNFMNP 70
Query: 153 YRFF-DEVEKHFGI 165
+ G+
Sbjct: 71 CLTPPSKTLIEVGL 84
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 26.3 bits (57), Expect = 2.9
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 372 QEPWLVVLYAPWCQFCQVIDVFMQ 395
LV +A WC C++I +
Sbjct: 20 DGAILVDFWAEWCGPCKMIAPILD 43
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 27.8 bits (61), Expect = 2.9
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 117 IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYR 154
I + A ++A + AH G + +L G L+ +
Sbjct: 413 IGYDKAAEIA--KKAHKEGLTLKAAALALGYLSEAEFD 448
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.7 bits (58), Expect = 3.0
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQ 395
+ P +V+++ WC C+ +
Sbjct: 16 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFA 48
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 26.9 bits (58), Expect = 3.1
Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 335 GNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFC-QVIDVF 393
G+G AVA L E L R+ + L+V WC C +
Sbjct: 19 GHGLATEQGAVARFRQKLESNGLPSALTERLQRI--ERRYRLLVAGEMWCPDCQINLAAL 76
Query: 394 MQI 396
Sbjct: 77 DFA 79
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 25.8 bits (56), Expect = 3.6
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 376 LVVLYAPWCQFCQVI 390
+ V +P C +C +
Sbjct: 5 IEVFTSPTCPYCPMA 19
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 26.4 bits (57), Expect = 3.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 354 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQ 388
L TL + + +P L+ +A WC C
Sbjct: 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCL 39
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 27.2 bits (59), Expect = 4.2
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 102 EIMDRALEK-FGNDIAIAFSGAEDVA--LIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
E M +EK G AI + A L A+LTG R + G L E +E
Sbjct: 392 ERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQ---LNE 448
Query: 159 V 159
+
Sbjct: 449 I 449
>d3eeqa2 c.152.1.1 (A:8-214) Cobalamin biosynthesis protein G, CbiG
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 207
Score = 26.4 bits (58), Expect = 4.9
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 107 ALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 158
++E+ N + E++ I A L + +D PE + E
Sbjct: 131 SIERIANILIAKIINPENIVKINAALLRDESICIDGIDVNVNFPENIKVNSE 182
>d2qtpa1 d.79.9.1 (A:3-171) Uncharacterized protein SPO0826
{Silicibacter pomeroyi [TaxId: 89184]}
Length = 169
Score = 26.2 bits (58), Expect = 5.1
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 172 PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSE 231
P+ E G E + PLR+A++ A + +K SPG +
Sbjct: 71 PEQAESYGKSAMVGENGELEHA-AAILHPKLGAPLRKAVEKGAALVPSSKKMGSPGQVLD 129
Query: 232 IPVVQVD 238
+P+ D
Sbjct: 130 VPLGHKD 136
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 25.5 bits (55), Expect = 5.5
Identities = 8/37 (21%), Positives = 15/37 (40%)
Query: 363 ENLARLDHRQEPWLVVLYAPWCQFCQVIDVFMQIRFQ 399
E+ + Q+ +V A WC C++I +
Sbjct: 17 EHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAK 53
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 25.6 bits (55), Expect = 6.1
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 373 EPWLVVLYAPWCQFCQVIDVFMQ 395
+ L+ YAPWC C+ + +
Sbjct: 21 KDVLIEFYAPWCGHCKALAPKYE 43
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 24.9 bits (53), Expect = 9.0
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 375 WLVVLYAPWCQFCQVIDVFMQ 395
++V P C +C +
Sbjct: 18 RILVFVTPTCPYCPLAVRMAH 38
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 25.2 bits (54), Expect = 9.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 373 EPWLVVLYAPWCQFCQVIDVFMQ 395
+ LV+ YAPWC C+ + Q
Sbjct: 31 KDVLVLYYAPWCGHCKRLAPTYQ 53
>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 143
Score = 25.5 bits (56), Expect = 9.4
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 200 VRKVRPLRRALKGLR 214
++R R L+ LR
Sbjct: 95 ESRIRAQRTKLRELR 109
>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 24.6 bits (54), Expect = 9.9
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 12/90 (13%)
Query: 30 IGSFRLVDRAHVASTSLSQRRSLVRPLNAEPKR--NDSVVPLA-------ATLATPEVA- 79
+G + R + SL ++R+L++P K S L + +
Sbjct: 5 LGLYTA--RLETPARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGN 62
Query: 80 EKVEGEEDFEQFAKELENASPLEIMDRALE 109
+ EE A+ L A ++
Sbjct: 63 DPAWVEETMRAAARFLAEAGGFQVALEEFR 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.407
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,173
Number of extensions: 73741
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 40
Length of query: 414
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 326
Effective length of database: 1,199,356
Effective search space: 390990056
Effective search space used: 390990056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)