Query 015015
Match_columns 414
No_of_seqs 250 out of 2200
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 02:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 100.0 1.3E-57 2.9E-62 453.4 17.6 258 13-288 1-284 (371)
2 KOG0713 Molecular chaperone (D 100.0 3.1E-50 6.8E-55 391.4 9.8 318 2-357 2-321 (336)
3 PRK14288 chaperone protein Dna 100.0 2.5E-49 5.4E-54 401.3 16.6 252 15-287 2-277 (369)
4 PRK14296 chaperone protein Dna 100.0 3.2E-48 7E-53 393.4 18.7 255 15-287 3-293 (372)
5 PTZ00037 DnaJ_C chaperone prot 100.0 4E-48 8.6E-53 397.2 18.1 245 13-287 25-293 (421)
6 PRK14298 chaperone protein Dna 100.0 2.9E-47 6.2E-52 387.1 18.1 256 15-287 4-284 (377)
7 PRK14285 chaperone protein Dna 100.0 5.5E-47 1.2E-51 383.7 17.5 255 15-288 2-286 (365)
8 PRK14286 chaperone protein Dna 100.0 5.4E-47 1.2E-51 384.6 17.5 254 15-287 3-289 (372)
9 PRK14278 chaperone protein Dna 100.0 1.3E-46 2.8E-51 382.6 18.7 252 16-287 3-282 (378)
10 PRK14282 chaperone protein Dna 100.0 1.9E-46 4.1E-51 380.5 18.7 256 15-287 3-295 (369)
11 PRK14279 chaperone protein Dna 100.0 1.3E-46 2.9E-51 384.0 17.6 255 14-287 7-312 (392)
12 PRK14276 chaperone protein Dna 100.0 1.7E-46 3.7E-51 382.1 17.9 255 15-287 3-289 (380)
13 PRK14287 chaperone protein Dna 100.0 2.1E-46 4.5E-51 380.3 18.3 253 15-287 3-281 (371)
14 PRK14294 chaperone protein Dna 100.0 2.4E-46 5.2E-51 379.4 16.6 254 15-287 3-283 (366)
15 PRK14290 chaperone protein Dna 100.0 6E-46 1.3E-50 376.3 19.3 255 16-288 3-290 (365)
16 PRK14280 chaperone protein Dna 100.0 6.1E-46 1.3E-50 377.5 18.3 254 15-287 3-286 (376)
17 PRK14284 chaperone protein Dna 100.0 5.3E-46 1.2E-50 379.7 17.2 252 16-287 1-297 (391)
18 PRK14297 chaperone protein Dna 100.0 1.1E-45 2.5E-50 376.1 19.5 256 15-287 3-291 (380)
19 PRK14277 chaperone protein Dna 100.0 6.8E-46 1.5E-50 378.4 17.6 256 15-287 4-298 (386)
20 PRK14301 chaperone protein Dna 100.0 8.1E-46 1.8E-50 376.1 17.3 254 15-287 3-283 (373)
21 PRK10767 chaperone protein Dna 100.0 1.3E-45 2.8E-50 374.8 17.8 254 15-287 3-281 (371)
22 PRK14295 chaperone protein Dna 100.0 1.6E-45 3.4E-50 375.8 17.7 256 14-288 7-306 (389)
23 PRK14281 chaperone protein Dna 100.0 5.7E-45 1.2E-49 372.7 17.3 256 15-287 2-305 (397)
24 PRK14291 chaperone protein Dna 100.0 6.5E-45 1.4E-49 370.7 17.0 253 15-287 2-294 (382)
25 TIGR02349 DnaJ_bact chaperone 100.0 8.1E-45 1.7E-49 366.9 17.0 253 17-287 1-286 (354)
26 KOG0712 Molecular chaperone (D 100.0 1.1E-44 2.3E-49 356.6 13.7 245 14-286 2-270 (337)
27 PRK14300 chaperone protein Dna 100.0 1.8E-43 3.9E-48 359.0 18.1 253 16-288 3-285 (372)
28 PRK14283 chaperone protein Dna 100.0 2.3E-43 5E-48 359.0 17.6 255 15-287 4-289 (378)
29 PRK14293 chaperone protein Dna 100.0 1.8E-42 4E-47 351.9 15.1 254 15-288 2-287 (374)
30 PRK14289 chaperone protein Dna 100.0 3.8E-42 8.2E-47 351.0 17.0 257 15-288 4-298 (386)
31 PRK14292 chaperone protein Dna 100.0 1.4E-41 3.1E-46 345.2 17.1 250 16-287 2-281 (371)
32 PRK14299 chaperone protein Dna 100.0 7E-32 1.5E-36 265.9 11.4 188 15-287 3-220 (291)
33 PRK10266 curved DNA-binding pr 100.0 3.2E-31 6.9E-36 263.0 13.3 208 16-288 4-229 (306)
34 KOG0715 Molecular chaperone (D 100.0 2.4E-30 5.3E-35 253.8 11.1 229 15-279 42-286 (288)
35 KOG0716 Molecular chaperone (D 99.8 1.6E-19 3.4E-24 171.8 4.7 77 12-88 27-103 (279)
36 KOG0691 Molecular chaperone (D 99.7 7.5E-19 1.6E-23 172.0 3.4 74 15-88 4-77 (296)
37 PTZ00341 Ring-infected erythro 99.7 1.7E-18 3.8E-23 187.6 5.5 77 12-89 569-645 (1136)
38 KOG0718 Molecular chaperone (D 99.7 1.4E-18 3.1E-23 175.0 4.1 78 12-89 5-85 (546)
39 KOG0719 Molecular chaperone (D 99.7 9.5E-18 2.1E-22 156.2 4.4 110 13-135 11-122 (264)
40 PF00226 DnaJ: DnaJ domain; I 99.7 1.4E-17 3E-22 127.5 2.4 63 17-79 1-64 (64)
41 KOG0717 Molecular chaperone (D 99.7 2.3E-17 5E-22 166.4 3.6 77 11-87 3-80 (508)
42 TIGR03835 termin_org_DnaJ term 99.6 3.5E-16 7.6E-21 166.6 5.5 72 16-88 2-73 (871)
43 KOG0714 Molecular chaperone (D 99.6 3.8E-15 8.2E-20 144.2 10.6 252 15-287 2-271 (306)
44 PHA03102 Small T antigen; Revi 99.6 6.3E-16 1.4E-20 138.1 4.6 84 16-113 5-90 (153)
45 smart00271 DnaJ DnaJ molecular 99.6 1.6E-15 3.5E-20 114.2 5.8 59 16-74 1-60 (60)
46 cd06257 DnaJ DnaJ domain or J- 99.6 4.2E-15 9.1E-20 109.9 5.7 55 17-71 1-55 (55)
47 COG2214 CbpA DnaJ-class molecu 99.6 3.7E-15 8.1E-20 137.8 5.8 69 14-82 4-73 (237)
48 KOG0624 dsRNA-activated protei 99.5 4.5E-15 9.7E-20 145.8 5.1 77 13-90 391-470 (504)
49 KOG0721 Molecular chaperone (D 99.5 4E-15 8.7E-20 137.7 4.4 75 11-85 94-168 (230)
50 PRK05014 hscB co-chaperone Hsc 99.4 2.6E-13 5.6E-18 124.1 4.8 64 17-80 2-72 (171)
51 KOG0550 Molecular chaperone (D 99.4 1.7E-13 3.8E-18 137.3 3.7 69 13-81 370-439 (486)
52 PRK01356 hscB co-chaperone Hsc 99.3 5.2E-13 1.1E-17 121.5 4.1 65 16-80 2-71 (166)
53 PRK03578 hscB co-chaperone Hsc 99.3 7.9E-13 1.7E-17 121.4 5.0 66 15-80 5-77 (176)
54 KOG0722 Molecular chaperone (D 99.3 4E-13 8.6E-18 126.9 2.6 67 15-82 32-98 (329)
55 PRK00294 hscB co-chaperone Hsc 99.3 1.2E-12 2.6E-17 119.8 5.2 67 14-80 2-75 (173)
56 KOG0720 Molecular chaperone (D 99.3 1.1E-12 2.3E-17 132.9 3.5 67 15-82 234-300 (490)
57 PTZ00100 DnaJ chaperone protei 99.2 3.1E-11 6.8E-16 102.9 4.7 55 12-70 61-115 (116)
58 PRK09430 djlA Dna-J like membr 99.1 4.2E-11 9.2E-16 116.9 4.8 60 13-72 197-263 (267)
59 PHA02624 large T antigen; Prov 99.0 1.2E-10 2.7E-15 123.3 4.3 60 15-78 10-71 (647)
60 COG5407 SEC63 Preprotein trans 99.0 1.3E-10 2.7E-15 117.6 2.4 72 15-86 97-173 (610)
61 KOG1150 Predicted molecular ch 99.0 4E-10 8.7E-15 103.3 3.5 70 8-77 45-115 (250)
62 PRK01773 hscB co-chaperone Hsc 98.9 1.7E-09 3.7E-14 99.1 4.7 64 16-79 2-72 (173)
63 TIGR00714 hscB Fe-S protein as 98.8 5.1E-09 1.1E-13 94.6 4.3 54 28-81 3-61 (157)
64 TIGR03835 termin_org_DnaJ term 98.7 1.4E-08 3.1E-13 109.3 7.3 71 211-287 692-765 (871)
65 COG0484 DnaJ DnaJ-class molecu 98.6 5.7E-08 1.2E-12 98.1 6.4 127 142-293 131-280 (371)
66 COG5269 ZUO1 Ribosome-associat 98.6 2E-08 4.3E-13 96.1 2.3 73 11-83 38-115 (379)
67 PF00684 DnaJ_CXXCXGXG: DnaJ c 98.4 4.4E-07 9.6E-12 70.2 4.5 62 138-210 1-66 (66)
68 PRK14284 chaperone protein Dna 98.3 1.2E-06 2.7E-11 90.2 7.0 97 191-293 179-294 (391)
69 PRK14279 chaperone protein Dna 98.2 3.1E-06 6.7E-11 87.2 8.0 128 141-293 161-309 (392)
70 PRK14296 chaperone protein Dna 98.2 3.7E-06 7.9E-11 86.1 8.4 104 191-300 170-301 (372)
71 PRK14298 chaperone protein Dna 98.2 2.8E-06 6.1E-11 87.1 7.4 97 191-293 162-281 (377)
72 PRK14278 chaperone protein Dna 98.2 3.3E-06 7.1E-11 86.7 7.6 97 191-293 160-279 (378)
73 PRK14288 chaperone protein Dna 98.2 3.1E-06 6.7E-11 86.6 7.0 132 141-299 128-284 (369)
74 PRK14285 chaperone protein Dna 98.2 3.6E-06 7.7E-11 86.0 7.2 97 191-293 167-282 (365)
75 PRK14282 chaperone protein Dna 98.2 4.9E-06 1.1E-10 85.1 8.1 97 191-293 173-292 (369)
76 PRK14281 chaperone protein Dna 98.1 2.8E-06 6.1E-11 87.7 5.8 98 190-293 182-302 (397)
77 PRK14287 chaperone protein Dna 98.1 4.7E-06 1E-10 85.3 7.4 97 191-293 159-278 (371)
78 PRK14290 chaperone protein Dna 98.1 4.9E-06 1.1E-10 85.0 7.2 95 191-293 169-286 (365)
79 PRK14300 chaperone protein Dna 98.1 6E-06 1.3E-10 84.6 7.7 97 191-293 166-281 (372)
80 PRK14295 chaperone protein Dna 98.1 5.6E-06 1.2E-10 85.3 7.5 118 151-293 166-302 (389)
81 PRK14280 chaperone protein Dna 98.1 8.3E-06 1.8E-10 83.7 8.1 97 191-293 164-283 (376)
82 PRK14294 chaperone protein Dna 98.1 6.2E-06 1.3E-10 84.3 6.8 97 191-293 165-280 (366)
83 PRK14276 chaperone protein Dna 98.1 7.9E-06 1.7E-10 83.9 7.6 97 191-293 167-286 (380)
84 PRK14291 chaperone protein Dna 98.1 8.1E-06 1.7E-10 83.9 7.6 98 190-293 176-291 (382)
85 KOG1789 Endocytosis protein RM 98.1 3.1E-06 6.8E-11 93.1 4.4 59 9-70 1274-1336(2235)
86 PTZ00037 DnaJ_C chaperone prot 98.1 7.4E-06 1.6E-10 85.1 7.0 124 150-300 149-301 (421)
87 PRK14286 chaperone protein Dna 98.0 7.9E-06 1.7E-10 83.7 6.9 97 191-293 171-286 (372)
88 PRK14277 chaperone protein Dna 98.0 8.7E-06 1.9E-10 83.8 7.1 97 191-293 176-295 (386)
89 PRK10767 chaperone protein Dna 98.0 1.2E-05 2.6E-10 82.3 7.4 128 141-293 130-278 (371)
90 PRK14297 chaperone protein Dna 98.0 1.5E-05 3.2E-10 81.9 7.6 118 151-293 148-288 (380)
91 PRK14301 chaperone protein Dna 98.0 1.2E-05 2.5E-10 82.5 6.3 97 191-293 165-280 (373)
92 KOG0568 Molecular chaperone (D 97.9 9.6E-06 2.1E-10 76.3 3.6 54 17-71 48-102 (342)
93 TIGR02349 DnaJ_bact chaperone 97.9 2.5E-05 5.4E-10 79.4 6.9 97 191-293 164-283 (354)
94 PRK14289 chaperone protein Dna 97.7 5.7E-05 1.2E-09 77.8 7.1 97 191-293 175-294 (386)
95 PRK14283 chaperone protein Dna 97.7 7E-05 1.5E-09 76.9 7.2 97 191-293 167-286 (378)
96 PLN03165 chaperone protein dna 97.6 0.00015 3.2E-09 61.8 6.6 78 114-213 22-99 (111)
97 PRK14293 chaperone protein Dna 97.6 0.00011 2.4E-09 75.3 6.0 97 191-293 164-283 (374)
98 PRK14292 chaperone protein Dna 97.5 0.00014 3.1E-09 74.4 6.0 95 191-293 161-278 (371)
99 KOG0723 Molecular chaperone (D 97.2 0.00049 1.1E-08 57.6 4.6 53 16-72 56-108 (112)
100 TIGR02642 phage_xxxx uncharact 96.9 0.00097 2.1E-08 61.8 4.4 43 191-234 103-148 (186)
101 COG1107 Archaea-specific RecJ- 96.1 0.0021 4.6E-08 68.0 1.4 64 136-199 3-80 (715)
102 KOG3192 Mitochondrial J-type c 95.9 0.0033 7.1E-08 56.2 1.5 65 15-79 7-78 (168)
103 COG1076 DjlA DnaJ-domain-conta 95.0 0.012 2.5E-07 54.1 1.7 54 16-69 113-173 (174)
104 KOG0431 Auxilin-like protein a 94.5 0.036 7.9E-07 58.3 4.0 43 27-69 399-448 (453)
105 KOG2813 Predicted molecular ch 94.2 0.039 8.5E-07 54.7 3.3 124 137-289 200-326 (406)
106 COG1076 DjlA DnaJ-domain-conta 94.0 0.019 4E-07 52.8 0.6 64 17-80 2-72 (174)
107 PRK10266 curved DNA-binding pr 86.8 1.1 2.3E-05 44.9 5.2 65 229-293 159-225 (306)
108 PF00684 DnaJ_CXXCXGXG: DnaJ c 86.3 1.1 2.4E-05 34.3 4.0 51 135-197 15-66 (66)
109 PF03656 Pam16: Pam16; InterP 85.7 1.1 2.3E-05 39.3 4.0 52 17-72 59-110 (127)
110 TIGR02642 phage_xxxx uncharact 78.9 1.2 2.6E-05 41.4 1.9 9 191-199 119-127 (186)
111 COG1107 Archaea-specific RecJ- 76.5 3 6.6E-05 44.9 4.2 23 189-211 55-79 (715)
112 KOG0713 Molecular chaperone (D 74.9 1.1 2.3E-05 45.2 0.4 139 114-286 125-269 (336)
113 COG1422 Predicted membrane pro 73.4 7.3 0.00016 36.6 5.4 51 287-337 60-111 (201)
114 KOG2813 Predicted molecular ch 71.9 2.6 5.6E-05 42.2 2.2 66 135-210 187-255 (406)
115 PF11418 Scaffolding_pro: Phi2 71.7 16 0.00035 29.7 6.2 68 286-353 6-73 (97)
116 PF13446 RPT: A repeated domai 69.7 7.9 0.00017 29.0 4.0 26 17-42 6-31 (62)
117 KOG0724 Zuotin and related mol 69.1 3.6 7.8E-05 41.4 2.7 54 28-81 4-61 (335)
118 KOG2703 C4-type Zn-finger prot 68.7 12 0.00027 38.6 6.2 55 280-334 120-174 (460)
119 PLN03165 chaperone protein dna 67.4 4 8.7E-05 34.9 2.1 10 201-210 76-85 (111)
120 PRK14299 chaperone protein Dna 67.2 8.9 0.00019 38.0 4.9 58 230-293 158-217 (291)
121 PRK14139 heat shock protein Gr 64.8 32 0.00069 32.1 7.7 48 290-337 30-77 (185)
122 PHA00489 scaffolding protein 64.7 28 0.0006 28.5 6.3 66 285-350 6-71 (101)
123 PF12325 TMF_TATA_bd: TATA ele 64.5 29 0.00064 30.0 7.0 36 304-339 66-101 (120)
124 PF05546 She9_MDM33: She9 / Md 63.8 29 0.00064 32.8 7.3 50 294-343 34-83 (207)
125 PF01556 CTDII: DnaJ C termina 62.7 12 0.00026 29.6 4.0 23 216-238 27-49 (81)
126 PF13094 CENP-Q: CENP-Q, a CEN 62.1 50 0.0011 29.5 8.4 65 285-349 20-84 (160)
127 PRK14154 heat shock protein Gr 61.9 36 0.00078 32.3 7.6 44 293-336 53-96 (208)
128 PF14687 DUF4460: Domain of un 59.9 14 0.0003 31.6 4.1 48 26-73 4-55 (112)
129 KOG0712 Molecular chaperone (D 59.6 10 0.00022 38.6 3.7 36 256-292 229-267 (337)
130 PF04949 Transcrip_act: Transc 59.5 52 0.0011 29.5 7.6 52 293-344 92-143 (159)
131 PF11833 DUF3353: Protein of u 59.4 11 0.00025 35.2 3.8 40 25-72 1-40 (194)
132 smart00709 Zpr1 Duplicated dom 58.5 1.1E+02 0.0023 27.8 9.9 20 292-311 93-112 (160)
133 PRK14140 heat shock protein Gr 57.7 50 0.0011 30.9 7.7 48 290-337 35-82 (191)
134 PRK14158 heat shock protein Gr 57.7 49 0.0011 31.1 7.7 48 290-337 38-85 (194)
135 TIGR00310 ZPR1_znf ZPR1 zinc f 57.6 1.1E+02 0.0023 28.7 10.0 18 294-311 95-112 (192)
136 PF02183 HALZ: Homeobox associ 56.7 36 0.00078 24.3 5.1 37 310-346 2-38 (45)
137 PRK14143 heat shock protein Gr 56.5 51 0.0011 32.0 7.8 46 292-337 67-112 (238)
138 PRK14162 heat shock protein Gr 55.3 58 0.0013 30.6 7.8 47 291-337 38-84 (194)
139 PRK14148 heat shock protein Gr 54.1 63 0.0014 30.4 7.8 45 293-337 41-85 (195)
140 PF15030 DUF4527: Protein of u 54.0 75 0.0016 30.9 8.3 63 289-351 13-75 (277)
141 PRK14161 heat shock protein Gr 53.8 66 0.0014 29.7 7.8 43 294-336 21-63 (178)
142 PF10498 IFT57: Intra-flagella 52.7 42 0.00091 34.5 6.9 65 285-352 248-312 (359)
143 PRK14155 heat shock protein Gr 51.7 54 0.0012 31.1 7.0 44 293-336 14-57 (208)
144 PF08053 Tna_leader: Tryptopha 51.6 5.7 0.00012 23.8 0.3 10 399-408 10-19 (24)
145 PRK14160 heat shock protein Gr 51.2 64 0.0014 30.7 7.4 47 290-336 59-105 (211)
146 PRK14145 heat shock protein Gr 50.2 78 0.0017 29.8 7.7 48 290-337 43-90 (196)
147 PRK14147 heat shock protein Gr 50.1 74 0.0016 29.2 7.5 43 294-336 20-62 (172)
148 PF03791 KNOX2: KNOX2 domain ; 49.1 55 0.0012 24.2 5.2 29 305-333 8-36 (52)
149 PF05377 FlaC_arch: Flagella a 48.9 65 0.0014 24.1 5.6 34 294-327 16-49 (55)
150 PRK14159 heat shock protein Gr 48.1 50 0.0011 30.5 6.1 46 292-337 22-68 (176)
151 PRK09806 tryptophanase leader 47.6 7.2 0.00016 23.8 0.3 10 399-408 10-19 (26)
152 cd07651 F-BAR_PombeCdc15_like 47.2 83 0.0018 29.9 7.7 55 293-347 151-205 (236)
153 PRK14151 heat shock protein Gr 46.3 92 0.002 28.7 7.5 47 291-337 19-65 (176)
154 PRK14141 heat shock protein Gr 45.6 83 0.0018 29.9 7.2 43 295-337 34-76 (209)
155 PRK14157 heat shock protein Gr 45.2 68 0.0015 30.9 6.6 41 296-336 81-121 (227)
156 PRK14146 heat shock protein Gr 44.5 94 0.002 29.6 7.5 44 293-336 55-98 (215)
157 KOG0715 Molecular chaperone (D 43.6 16 0.00035 36.3 2.3 99 150-280 163-279 (288)
158 COG5552 Uncharacterized conser 43.4 63 0.0014 25.7 5.0 35 16-50 3-37 (88)
159 PF14523 Syntaxin_2: Syntaxin- 43.3 91 0.002 25.3 6.4 35 300-334 65-99 (102)
160 PF03961 DUF342: Protein of un 41.8 1.3E+02 0.0028 31.7 8.8 71 283-353 325-408 (451)
161 PF03367 zf-ZPR1: ZPR1 zinc-fi 41.8 1.2E+02 0.0025 27.6 7.3 22 292-313 95-116 (161)
162 PRK14156 heat shock protein Gr 41.1 1.2E+02 0.0025 28.2 7.3 42 295-336 30-71 (177)
163 PF07926 TPR_MLP1_2: TPR/MLP1/ 40.1 1.5E+02 0.0033 25.6 7.6 49 289-337 14-62 (132)
164 KOG1962 B-cell receptor-associ 39.7 1.1E+02 0.0023 29.3 7.0 57 294-350 153-209 (216)
165 cd07655 F-BAR_PACSIN The F-BAR 39.6 1.3E+02 0.0027 29.3 7.7 52 292-343 168-219 (258)
166 PF10368 YkyA: Putative cell-w 39.5 75 0.0016 30.0 6.0 63 290-352 73-136 (204)
167 PRK14144 heat shock protein Gr 39.4 1.4E+02 0.0031 28.1 7.7 43 294-336 47-89 (199)
168 PF10146 zf-C4H2: Zinc finger- 39.3 1.8E+02 0.0038 28.1 8.5 28 289-316 22-49 (230)
169 PF07106 TBPIP: Tat binding pr 39.2 2.3E+02 0.0049 25.5 8.9 60 259-325 45-105 (169)
170 PRK10884 SH3 domain-containing 38.9 3.4E+02 0.0074 25.6 11.1 30 290-319 91-120 (206)
171 PF05377 FlaC_arch: Flagella a 38.3 1.2E+02 0.0026 22.7 5.5 24 294-317 2-25 (55)
172 PRK14153 heat shock protein Gr 38.2 1.2E+02 0.0026 28.5 7.0 44 294-337 35-78 (194)
173 COG3352 FlaC Putative archaeal 37.7 1.4E+02 0.003 27.0 6.9 29 300-328 73-101 (157)
174 PF01025 GrpE: GrpE; InterPro 37.2 35 0.00076 30.5 3.2 59 294-352 13-80 (165)
175 PF13851 GAS: Growth-arrest sp 37.0 1.5E+02 0.0032 27.9 7.5 18 334-351 114-131 (201)
176 PRK14163 heat shock protein Gr 36.6 1.6E+02 0.0035 28.1 7.7 43 294-336 42-84 (214)
177 PF08317 Spc7: Spc7 kinetochor 36.0 1.8E+02 0.004 29.2 8.5 60 285-344 209-268 (325)
178 COG4026 Uncharacterized protei 35.4 1.6E+02 0.0035 28.3 7.4 36 305-344 155-190 (290)
179 PTZ00111 DNA replication licen 34.7 97 0.0021 35.8 6.8 23 169-192 233-255 (915)
180 PF02996 Prefoldin: Prefoldin 33.9 2.6E+02 0.0057 23.2 8.0 32 294-325 79-110 (120)
181 cd00890 Prefoldin Prefoldin is 33.8 2.8E+02 0.0061 23.2 8.6 33 294-326 89-121 (129)
182 PF07352 Phage_Mu_Gam: Bacteri 32.9 1.9E+02 0.0041 25.6 7.2 54 287-343 5-58 (149)
183 TIGR00630 uvra excinuclease AB 32.7 19 0.00041 41.6 0.8 32 190-221 739-780 (924)
184 KOG0964 Structural maintenance 32.5 1.4E+02 0.0031 34.6 7.5 57 293-349 419-475 (1200)
185 COG3883 Uncharacterized protei 32.1 2.4E+02 0.0052 27.8 8.2 58 292-349 45-105 (265)
186 KOG2129 Uncharacterized conser 32.0 1.8E+02 0.004 30.5 7.6 46 280-325 241-286 (552)
187 TIGR02616 tnaC_leader tryptoph 31.9 20 0.00042 22.6 0.5 11 398-408 7-17 (26)
188 PF13747 DUF4164: Domain of un 31.9 2.4E+02 0.0052 23.0 7.0 51 291-341 38-88 (89)
189 PF05278 PEARLI-4: Arabidopsis 31.7 1.9E+02 0.0042 28.6 7.5 39 294-332 202-240 (269)
190 cd07647 F-BAR_PSTPIP The F-BAR 31.5 2.1E+02 0.0045 27.4 7.7 54 292-345 153-206 (239)
191 KOG1850 Myosin-like coiled-coi 30.7 1.6E+02 0.0034 29.9 6.7 67 286-353 110-176 (391)
192 PF13453 zf-TFIIB: Transcripti 30.6 52 0.0011 22.5 2.5 7 153-159 1-7 (41)
193 PF10805 DUF2730: Protein of u 30.4 2.7E+02 0.0059 23.3 7.4 52 291-342 48-101 (106)
194 KOG0288 WD40 repeat protein Ti 30.3 2.3E+02 0.005 29.8 8.0 38 287-324 15-52 (459)
195 smart00787 Spc7 Spc7 kinetocho 30.3 2.6E+02 0.0057 28.1 8.5 58 287-344 206-263 (312)
196 PHA02562 46 endonuclease subun 29.6 2.3E+02 0.005 30.2 8.5 40 310-349 327-366 (562)
197 COG0178 UvrA Excinuclease ATPa 29.2 41 0.00089 38.2 2.7 31 190-222 733-773 (935)
198 PF06103 DUF948: Bacterial pro 29.2 2.9E+02 0.0062 22.0 7.1 58 289-346 23-80 (90)
199 COG1579 Zn-ribbon protein, pos 29.0 2.5E+02 0.0054 27.3 7.7 55 289-346 114-168 (239)
200 PF09340 NuA4: Histone acetylt 27.6 1.1E+02 0.0024 24.4 4.3 30 288-317 5-34 (80)
201 TIGR00999 8a0102 Membrane Fusi 27.5 3.7E+02 0.008 25.3 8.8 68 257-340 4-74 (265)
202 PRK00349 uvrA excinuclease ABC 27.4 41 0.00088 39.0 2.4 31 190-222 741-781 (943)
203 PF06810 Phage_GP20: Phage min 27.3 3.6E+02 0.0078 24.2 8.1 25 289-313 24-48 (155)
204 PF10481 CENP-F_N: Cenp-F N-te 27.3 2.3E+02 0.0049 28.2 7.0 63 288-350 14-90 (307)
205 smart00503 SynN Syntaxin N-ter 27.2 2.2E+02 0.0048 23.3 6.4 30 303-332 86-115 (117)
206 COG1579 Zn-ribbon protein, pos 26.9 2.4E+02 0.0052 27.4 7.2 41 291-331 9-49 (239)
207 PRK14164 heat shock protein Gr 26.8 2.3E+02 0.0049 27.2 6.9 37 299-335 77-113 (218)
208 PF04111 APG6: Autophagy prote 26.5 3.4E+02 0.0074 27.3 8.6 30 290-319 48-77 (314)
209 PF01096 TFIIS_C: Transcriptio 26.3 76 0.0017 21.7 2.7 34 153-194 2-35 (39)
210 PTZ00007 (NAP-L) nucleosome as 26.1 2.1E+02 0.0045 29.2 6.9 53 296-348 34-87 (337)
211 PF08614 ATG16: Autophagy prot 25.9 3.9E+02 0.0085 24.6 8.3 52 290-341 128-179 (194)
212 PF10211 Ax_dynein_light: Axon 25.7 4.2E+02 0.009 24.6 8.4 33 295-327 123-155 (189)
213 PF04216 FdhE: Protein involve 25.6 63 0.0014 31.9 3.1 47 151-197 172-221 (290)
214 PRK10884 SH3 domain-containing 25.4 1.9E+02 0.0041 27.4 6.1 30 288-317 96-125 (206)
215 PRK09039 hypothetical protein; 25.4 3.3E+02 0.0072 27.7 8.3 63 287-349 132-202 (343)
216 PF12434 Malate_DH: Malate deh 25.1 75 0.0016 20.3 2.2 17 30-46 10-26 (28)
217 PF07709 SRR: Seven Residue Re 25.1 38 0.00083 18.0 0.8 13 58-70 2-14 (14)
218 PF11559 ADIP: Afadin- and alp 25.1 3.5E+02 0.0076 23.7 7.5 46 294-339 75-120 (151)
219 KOG0964 Structural maintenance 25.1 2.1E+02 0.0045 33.3 7.1 53 290-342 326-378 (1200)
220 PF10041 DUF2277: Uncharacteri 25.0 2.5E+02 0.0054 22.5 5.6 34 17-50 4-37 (78)
221 TIGR00340 zpr1_rel ZPR1-relate 24.9 5.3E+02 0.011 23.5 9.3 19 293-311 92-110 (163)
222 KOG0163 Myosin class VI heavy 24.0 2.1E+02 0.0046 32.5 6.8 50 294-343 874-927 (1259)
223 PRK03564 formate dehydrogenase 24.0 94 0.002 31.3 4.0 47 150-196 186-235 (309)
224 cd07681 F-BAR_PACSIN3 The F-BA 24.0 3.6E+02 0.0079 26.4 7.9 49 292-340 168-216 (258)
225 smart00440 ZnF_C2C2 C2C2 Zinc 23.8 1E+02 0.0022 21.2 3.0 34 153-194 2-35 (40)
226 PRK00539 atpC F0F1 ATP synthas 23.6 4.9E+02 0.011 22.7 8.8 83 244-332 33-131 (133)
227 PHA03161 hypothetical protein; 23.6 3.1E+02 0.0068 24.7 6.7 50 291-340 60-109 (150)
228 PF05278 PEARLI-4: Arabidopsis 23.6 4.2E+02 0.0092 26.2 8.2 62 290-351 191-252 (269)
229 PF12325 TMF_TATA_bd: TATA ele 23.2 3.3E+02 0.0071 23.5 6.7 35 290-324 21-55 (120)
230 PF09738 DUF2051: Double stran 23.1 4.3E+02 0.0093 26.6 8.4 64 286-349 78-172 (302)
231 PRK14149 heat shock protein Gr 22.9 3.2E+02 0.007 25.6 7.0 37 300-336 44-80 (191)
232 KOG0774 Transcription factor P 22.9 1.9E+02 0.0041 28.5 5.5 39 301-342 102-140 (334)
233 PRK14150 heat shock protein Gr 22.8 3.2E+02 0.0069 25.6 7.0 40 294-336 43-82 (193)
234 PF07092 DUF1356: Protein of u 22.8 77 0.0017 30.7 2.9 9 191-199 42-50 (238)
235 PF04012 PspA_IM30: PspA/IM30 22.7 4.7E+02 0.01 24.4 8.3 54 289-342 88-141 (221)
236 PF13600 DUF4140: N-terminal d 22.5 4.3E+02 0.0092 21.5 9.2 28 291-318 69-96 (104)
237 cd07623 BAR_SNX1_2 The Bin/Amp 22.3 4.2E+02 0.0092 25.0 8.0 18 290-307 121-138 (224)
238 cd00179 SynN Syntaxin N-termin 22.2 5E+02 0.011 22.3 8.0 41 303-346 85-125 (151)
239 PF02609 Exonuc_VII_S: Exonucl 22.2 3.1E+02 0.0067 19.8 6.0 53 287-339 1-53 (53)
240 TIGR01216 ATP_synt_epsi ATP sy 22.2 5.1E+02 0.011 22.3 8.9 37 294-330 89-127 (130)
241 PF08581 Tup_N: Tup N-terminal 22.1 3.6E+02 0.0078 21.6 6.2 40 293-332 33-72 (79)
242 PF12777 MT: Microtubule-bindi 22.0 4.2E+02 0.0092 26.8 8.4 64 287-350 223-289 (344)
243 smart00721 BAR BAR domain. 21.9 1.5E+02 0.0033 27.5 4.9 36 307-345 171-206 (239)
244 PF08606 Prp19: Prp19/Pso4-lik 21.4 3.7E+02 0.008 21.1 5.9 40 299-338 22-64 (70)
245 PF06148 COG2: COG (conserved 21.4 1.3E+02 0.0027 26.0 3.9 48 292-346 62-109 (133)
246 PRK04778 septation ring format 21.1 2.7E+02 0.0059 30.3 7.1 54 287-343 107-160 (569)
247 PF10473 CENP-F_leu_zip: Leuci 20.8 4.9E+02 0.011 23.1 7.4 50 291-340 51-100 (140)
248 cd00584 Prefoldin_alpha Prefol 20.7 5.2E+02 0.011 21.8 8.5 58 260-323 68-125 (129)
249 cd07672 F-BAR_PSTPIP2 The F-BA 20.4 4.9E+02 0.011 25.1 8.0 46 292-337 154-199 (240)
250 PF07200 Mod_r: Modifier of ru 20.4 4.4E+02 0.0094 23.0 7.2 34 299-332 62-95 (150)
251 cd07664 BAR_SNX2 The Bin/Amphi 20.3 4.7E+02 0.01 25.2 7.8 47 290-336 131-189 (234)
252 PF09903 DUF2130: Uncharacteri 20.1 4.4E+02 0.0096 25.9 7.7 55 299-353 180-238 (267)
253 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.1 5.7E+02 0.012 22.0 8.3 45 289-333 56-100 (132)
254 PHA02562 46 endonuclease subun 20.1 3.8E+02 0.0082 28.6 8.0 52 282-333 289-343 (562)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-57 Score=453.42 Aligned_cols=258 Identities=29% Similarity=0.405 Sum_probs=222.6
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD 92 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~ 92 (414)
++.+|||+||||+++||.+|||+|||+||++||||+|+++++|+++|++|++||||||||+||++||+||.++++++++.
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~g 80 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFG 80 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998754433
Q ss_pred ccccccccC-ccchhhhhhhcc------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCcc
Q 015015 93 MEIDLSNLG-TVNTMFAALFSK------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKV 150 (414)
Q Consensus 93 ~~~d~s~~g-d~~diF~~~Fg~------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~ 150 (414)
.. .+++|+ +|+|+|++|||+ +|.|+.+.|.+ +|+||+.|+++ .|+.|.|+|+ +++.
T Consensus 81 g~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~i-sleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~ 158 (371)
T COG0484 81 GF-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEI-TLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTD 158 (371)
T ss_pred CC-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEe-EhhhhccCceeeEecceeeECCcCCCCCCCCCCC
Confidence 32 566666 599999999942 46689999999 99999999864 5889999987 6778
Q ss_pred ccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCcc
Q 015015 151 EKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTL 229 (414)
Q Consensus 151 ~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g 229 (414)
+.+|++|+|.+.+.+....|++ +++.+| +.|+|+|.++ .+|+.|+|.|++.....|+|.||+|+.+|
T Consensus 159 ~~tC~tC~G~G~v~~~~~~g~~-~~~~~C-----------~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g 226 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRTGFF-SFQQTC-----------PTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDG 226 (371)
T ss_pred CCcCCCCCCcCeEEEEEeeeEE-EEEEEC-----------CCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccC
Confidence 9999999996665554444444 447899 9999999887 56888999999999999999999999999
Q ss_pred ceEEecCCCchhhhhccCCCCCCcce-e-ccCCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 230 NAIAIAKDPESAFFKRLEGLQPCEVS-E-LKAGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 230 ~~I~i~~~g~~g~~~rl~g~~~~~~~-~-i~~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
++|+++++++++. .|..++|++ . .+..|++|.|.|+||+..+.|++ +|+||..+.
T Consensus 227 ~~ir~~g~G~~g~----~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~ 284 (371)
T COG0484 227 DRIRLSGEGEAGP----NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIE 284 (371)
T ss_pred CEEEEecCcccCC----CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEE
Confidence 9999999997665 366678887 3 33568999999999999999996 999996543
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-50 Score=391.42 Aligned_cols=318 Identities=35% Similarity=0.444 Sum_probs=271.6
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcc
Q 015015 2 GSNKMEGSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNA 81 (414)
Q Consensus 2 ~~~~~~~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~ 81 (414)
+.-..++.......+|||+||||+++|+..|||+|||+||++|||||||+||.|.+.|++|+.||+|||||++|+.||++
T Consensus 2 ~~~~~~~~~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 2 SLLKLSGAEAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred chhhhhhhhhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 34445556666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCccchhhhhhhccccccceeccchhhHHHHhcCccccccCCCccccCCcccccccccccee
Q 015015 82 GFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVT 161 (414)
Q Consensus 82 G~~~~~~~~~~~~~d~s~~gd~~diF~~~Fg~~G~di~~~I~~~sLeEa~~G~v~~~~lc~Gtg~~g~~~k~C~~C~G~~ 161 (414)
|+++++.++...+.+.++ .++|+.||+.+|+ ++....++++ +|.|.-+...+.++|.+|+...
T Consensus 82 GEegL~~~~~~~~~g~~~----~~~f~~~f~dfg~----~~~g~~~~e~---------~~~g~~V~~~~e~~~~h~y~~~ 144 (336)
T KOG0713|consen 82 GEEGLKDENKDGEGGGGG----NDIFSAFFGDFGV----TVGGNPLEEA---------LPKGSDVSSDLEKQLEHFYMGN 144 (336)
T ss_pred hHhhhcccccccccCCcc----cchHHHhhccccc----ccCCCcccCC---------CCCCceEEeehhhchhhhhccc
Confidence 999988765322222111 6899999998886 2222233333 6677777788889999999999
Q ss_pred eeeeeccceeEEEEeeeccCcceeeecccCCCCcccceecc--CCCCCCceEeeeeEEEEEEEccCCCccceEEecCCCc
Q 015015 162 INDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQE--DSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPE 239 (414)
Q Consensus 162 i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~--~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~ 239 (414)
++++....|++..+.++.+.++++++|+|..|+|..+.+|+ |..|.+.+.......+++.+.+|.
T Consensus 145 ~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~k~~~e~~~~~~~~~~~~------------- 211 (336)
T KOG0713|consen 145 FVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNVKLVLEEDPLEVEFERGD------------- 211 (336)
T ss_pred HHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCccceeecCCceeeeeeecc-------------
Confidence 99999999999998888888999999999999998877765 778999887888888777774444
Q ss_pred hhhhhccCCCCCCcceeccCCCeeEEEeCCceeEecCccEEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 240 SAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKAL 319 (414)
Q Consensus 240 ~g~~~rl~g~~~~~~~~i~~gd~~f~r~gdnl~~~~~isleal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~ 319 (414)
..++..+..+..+.|+++++||+||+.+.+++..++--......+.+.++|++|+.++.|+..|+.||++|+
T Consensus 212 --------~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~ 283 (336)
T KOG0713|consen 212 --------ADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVS 283 (336)
T ss_pred --------cCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhh
Confidence 445555556667899999999999999999998888777766668899999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHhhhhccccccccc
Q 015015 320 ARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVTKTLS 357 (414)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 357 (414)
+++.++..++..+.+++.++|+.|+.++..|++..+..
T Consensus 284 r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 321 (336)
T KOG0713|consen 284 RKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEF 321 (336)
T ss_pred hhhccccchhhhhhhccchhhhccchhcceeEEecccC
Confidence 99999999999999999999999999999999887664
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.5e-49 Score=401.30 Aligned_cols=252 Identities=25% Similarity=0.318 Sum_probs=209.7
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||.+|||+|||+||++||||+|+.+++|.++|++|++||+||+||.+|++||+||+.+++..+.. .
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence 479999999999999999999999999999999998788899999999999999999999999999998776532211 1
Q ss_pred ccccc-cCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCccccCCcccccc
Q 015015 95 IDLSN-LGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSVSGKVEKQC 154 (414)
Q Consensus 95 ~d~s~-~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~~g~~~k~C 154 (414)
.++++ |++|.++|+.+||+ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|.......+|
T Consensus 81 ~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~v-slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C 159 (369)
T PRK14288 81 SDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIEL-SFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETC 159 (369)
T ss_pred cccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccc-cHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCC
Confidence 12222 34556778877752 34688899999 99999999854 477899998754467899
Q ss_pred ccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccceEE
Q 015015 155 AHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIA 233 (414)
Q Consensus 155 ~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~ 233 (414)
+.|.|.+++.... |+++ .+++| +.|+|.|+++ ..|+.|+|+|++.....|+|.||+|+.+|+.|+
T Consensus 160 ~~C~G~G~~~~~~--g~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~ 225 (369)
T PRK14288 160 KQCNGQGQVFMRQ--GFMS-FAQTC-----------GACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMV 225 (369)
T ss_pred CCCCCCcEEEEEe--ceEE-EEEec-----------CCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEE
Confidence 9999977665554 6664 45699 9999999765 557789999999999999999999999999999
Q ss_pred ecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 234 IAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 234 i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+++.+ +..++..++|++ .+. ..|++|.|.|+|||+++.|+| +||||+++
T Consensus 226 l~g~G-----~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i 277 (369)
T PRK14288 226 LKNKG-----NEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTI 277 (369)
T ss_pred EccCc-----cCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEE
Confidence 99999 555666788887 343 559999999999999999998 99999774
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.2e-48 Score=393.44 Aligned_cols=255 Identities=22% Similarity=0.351 Sum_probs=209.3
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc-cccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE-GMDM 93 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~-~~~~ 93 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+|||||.+|+.||+||+++++.. +...
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 469999999999999999999999999999999997 67899999999999999999999999999998776531 1000
Q ss_pred c-cc----cc-----ccCccchhhhhhhcc---------ccccceeccchhhHHHHhcCccc--------cccCCCcccc
Q 015015 94 E-ID----LS-----NLGTVNTMFAALFSK---------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV 146 (414)
Q Consensus 94 ~-~d----~s-----~~gd~~diF~~~Fg~---------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~ 146 (414)
. .+ ++ ++++|.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|.
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~l-tlee~~~G~~~~i~~~~~~~C~~C~G~G~ 160 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYL-TFKELLFGVDKIIELDLLTNCSKCFGSGA 160 (372)
T ss_pred CCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeec-cHHHhhCCeeEEEEEeeeeccCCCCCCcc
Confidence 0 01 11 234567889999973 35689999999 99999999854 4788999986
Q ss_pred -CCccccccccccceeeee--eeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEE
Q 015015 147 -SGKVEKQCAHFFGVTIND--QQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQV 222 (414)
Q Consensus 147 -~g~~~k~C~~C~G~~i~~--~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~I 222 (414)
.+....+|+.|.|.+++. ++.++ ++++++++| +.|+|.|.++ ..|+.|+|+|++.+...++|.|
T Consensus 161 ~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 228 (372)
T PRK14296 161 ESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKC-----------NVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNI 228 (372)
T ss_pred CCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecC-----------CCcCCcceeecccccCCCCceEEEEEEEEEEEE
Confidence 556678999999855433 34455 445667899 9999999775 5688899999999999999999
Q ss_pred ccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEe-CCceeEecCccE-EEecCcch
Q 015015 223 YRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVY-GDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 223 p~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~-gdnl~~~~~isl-eal~g~s~ 287 (414)
|+|+++|++|+|+++++++. ++..++|++ .+. ..|++|.|. |+||++++.|+| +||||+++
T Consensus 229 p~G~~~G~~i~~~g~G~~~~----~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~ 293 (372)
T PRK14296 229 PKGIRPNQQIKLSQKGHASL----NNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEI 293 (372)
T ss_pred CCCCCCCCEEEEeccccCCC----CCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEE
Confidence 99999999999999994432 466678887 343 569999996 899999999998 99999875
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4e-48 Score=397.19 Aligned_cols=245 Identities=27% Similarity=0.397 Sum_probs=209.2
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD 92 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~ 92 (414)
+...|||+||||+++||.+|||+|||+||++||||+|+ + .++|++|++||+||+||.+|+.||+||..+++..+
T Consensus 25 ~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~---~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~-- 98 (421)
T PTZ00037 25 VDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-D---PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE-- 98 (421)
T ss_pred ccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-h---HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC--
Confidence 34689999999999999999999999999999999986 3 37999999999999999999999999987664321
Q ss_pred ccccccccCccchhhhhhhcc--------ccccceeccchhhHHHHhcCccc--------cccCCCccccCCcccccccc
Q 015015 93 MEIDLSNLGTVNTMFAALFSK--------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSVSGKVEKQCAH 156 (414)
Q Consensus 93 ~~~d~s~~gd~~diF~~~Fg~--------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~~g~~~k~C~~ 156 (414)
+.+++.++|..||++ +|.++.+.|.+ +|+|+|+|+++ .|+.|.|+|.......+|+.
T Consensus 99 ------~~~d~~d~f~~~Fggg~~~~~~~rg~di~~~l~v-tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~ 171 (421)
T PTZ00037 99 ------QPADASDLFDLIFGGGRKPGGKKRGEDIVSHLKV-TLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKL 171 (421)
T ss_pred ------CCcchhhhHHHhhccccccccccCCCCEEEEeee-eHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCC
Confidence 123567888888873 36789999999 99999999864 47789999876556789999
Q ss_pred ccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee---ccCCCCCCceEeeeeEEEEEEEccCCCccce
Q 015015 157 FFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL---QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNA 231 (414)
Q Consensus 157 C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~---~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~ 231 (414)
|.|.++ ..++.++ |+++.+++| +.|+|.|.++ ..|..|+|.|++.+...|+|.||+|+.+|++
T Consensus 172 C~G~G~~~~~~~~g~-~~~q~~~~C-----------~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~ 239 (421)
T PTZ00037 172 CNGQGIRVQIRQMGS-MIHQTQSTC-----------NSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHK 239 (421)
T ss_pred CCCCCeEEEEEeecc-eeeEEEEeC-----------CCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcE
Confidence 998654 3344444 677788899 9999999886 5788999999999999999999999999999
Q ss_pred EEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 232 IAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 232 I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+|++++ +..++..|+|++ .+. ..|++|.|.|+|||+++.|+| +||||+++
T Consensus 240 I~~~G~G-----d~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i 293 (421)
T PTZ00037 240 ITFHGEA-----DEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVF 293 (421)
T ss_pred EEEeccc-----CCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEE
Confidence 9999999 666778889997 444 459999999999999999998 99999775
No 6
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.9e-47 Score=387.13 Aligned_cols=256 Identities=27% Similarity=0.373 Sum_probs=210.2
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccc-cc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGM-DM 93 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~-~~ 93 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||+||.++++.... ..
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 369999999999999999999999999999999997 5788899999999999999999999999999877653210 00
Q ss_pred cccccccCccchhhhhhhcc----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCcccccc
Q 015015 94 EIDLSNLGTVNTMFAALFSK----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQC 154 (414)
Q Consensus 94 ~~d~s~~gd~~diF~~~Fg~----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~C 154 (414)
.+..+++++|.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|. .+....+|
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~v-slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 161 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYI-TLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRC 161 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEE-EHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcC
Confidence 01112345677899999973 35689999999 99999999854 4778999986 56667899
Q ss_pred ccccceeeeee-eccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccceE
Q 015015 155 AHFFGVTINDQ-QAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAI 232 (414)
Q Consensus 155 ~~C~G~~i~~~-~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I 232 (414)
+.|.|.+++.. +..++++++.+++| +.|+|.|.++ ..|+.|.|+|++.+...|+|.||+|+.+|++|
T Consensus 162 ~~C~G~G~~~~~~~~~~g~~~~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i 230 (377)
T PRK14298 162 PTCGGTGQVTTTRSTPLGQFVTTTTC-----------STCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRL 230 (377)
T ss_pred CCCCCccEEEEEEecCceeEEEEEeC-----------CCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEE
Confidence 99998544332 22344455778999 9999999765 56888999999999999999999999999999
Q ss_pred EecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 233 AIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 233 ~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+++++++.+ .++..++|++ .+. ..|.+|.|.|+||++++.|+| +||+|.++
T Consensus 231 ~~~g~G~~~----~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 284 (377)
T PRK14298 231 KLSGEGEAG----SPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADI 284 (377)
T ss_pred EEecccCCC----CCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeE
Confidence 999999443 2456678887 333 569999999999999999998 99999875
No 7
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.5e-47 Score=383.72 Aligned_cols=255 Identities=27% Similarity=0.381 Sum_probs=211.3
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccc--c
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGM--D 92 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~--~ 92 (414)
.+|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|+.||+||+.+++..+. .
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 36999999999999999999999999999999999988889999999999999999999999999999887653211 1
Q ss_pred ccccccc----cCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CC
Q 015015 93 MEIDLSN----LGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SG 148 (414)
Q Consensus 93 ~~~d~s~----~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g 148 (414)
+..++++ +++|.++|+.||++ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .+
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~v-tlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~ 160 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEI-SLEDAYLGYKNNINITRNMLCESCLGKKSEKG 160 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEE-EHHHhhCCeEEEEEeeecccCCCCCCcccCCC
Confidence 1011111 34577899999973 24578889999 99999999854 4778999986 56
Q ss_pred ccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCC
Q 015015 149 KVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDS 227 (414)
Q Consensus 149 ~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~ 227 (414)
..+..|+.|.|.++... .+|++ +.+++| +.|+|.|.++ ..|..|+|+|++.+...++|.||+|+.
T Consensus 161 ~~~~~C~~C~G~G~~~~--~~G~~-~~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~ 226 (365)
T PRK14285 161 TSPSICNMCNGSGRVMQ--GGGFF-RVTTTC-----------PKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGID 226 (365)
T ss_pred CCCccCCCccCceeEEe--cCcee-EEeeec-----------CCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCC
Confidence 66789999999776554 46787 568899 9999999664 568889999999999999999999999
Q ss_pred ccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 228 TLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 228 ~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
+|++|+++++++.+. .+..++|++ .+. ..|+.|.|.|+||++++.|+| +||+|.++.
T Consensus 227 ~G~~i~~~g~G~~~~----~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~ 286 (365)
T PRK14285 227 DNQQIKMRGKGSVNP----DNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIK 286 (365)
T ss_pred CCCEEEEeeccccCC----CCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEE
Confidence 999999999994432 234468886 333 559999999999999999998 999997753
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.4e-47 Score=384.64 Aligned_cols=254 Identities=25% Similarity=0.377 Sum_probs=210.1
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc-c
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD-M 93 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~-~ 93 (414)
..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|++||+||+++++..... .
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 469999999999999999999999999999999998888899999999999999999999999999998876532110 0
Q ss_pred cccccc----cCccchhhhhhhcc---------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc
Q 015015 94 EIDLSN----LGTVNTMFAALFSK---------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV 146 (414)
Q Consensus 94 ~~d~s~----~gd~~diF~~~Fg~---------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~ 146 (414)
..++++ +++|.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|.
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~v-tLee~~~G~~k~i~~~r~~~C~~C~G~G~ 161 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEV-SLEDAALGREYKIEIPRLESCVDCNGSGA 161 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEE-EHHHHhCCeeEEEEeeccccCCCCcCCCc
Confidence 001111 35677899999963 24578889999 99999999864 4778999986
Q ss_pred -CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEcc
Q 015015 147 -SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYR 224 (414)
Q Consensus 147 -~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~ 224 (414)
.+....+|+.|.|.+++.... |+++ .+++| +.|+|.|.++ ..|+.|+|+|++.....|+|.||+
T Consensus 162 ~~~~~~~~C~~C~G~G~v~~~~--G~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~ 227 (372)
T PRK14286 162 SKGSSPTTCPDCGGSGQIRRTQ--GFFS-VATTC-----------PTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPP 227 (372)
T ss_pred CCCCCCccCCCCcCeEEEEEEe--ceEE-EEEeC-----------CCCCceeeEecccCCCCCCCcEEecceEEEEEECC
Confidence 455678999999977765554 6665 57799 9999999765 567889999999999999999999
Q ss_pred CCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 225 MDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 225 G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+.++++|+|++++++.. .+..++|++ .+. ..|.+|.|.|+||++++.|+| +||+|.++
T Consensus 228 G~~~G~~i~~~g~G~~~~----~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 289 (372)
T PRK14286 228 GVETGSRLKVSGEGEAGP----NGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEI 289 (372)
T ss_pred CCCCCCEEEECCccccCC----CCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEE
Confidence 999999999999995433 134557887 333 569999999999999999998 99999775
No 9
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-46 Score=382.63 Aligned_cols=252 Identities=28% Similarity=0.326 Sum_probs=207.0
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccccccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEI 95 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~~ 95 (414)
+|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|++||+||.+.....+....+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 69999999999999999999999999999999998 68899999999999999999999999999997632211100011
Q ss_pred cccccCccchhhhhhhcc------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCcccccc
Q 015015 96 DLSNLGTVNTMFAALFSK------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQC 154 (414)
Q Consensus 96 d~s~~gd~~diF~~~Fg~------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~C 154 (414)
+ .+|++++++|+.||++ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .+..+.+|
T Consensus 82 ~-~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~v-tLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C 159 (378)
T PRK14278 82 G-GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRL-DLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTC 159 (378)
T ss_pred C-cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEE-EHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceec
Confidence 1 1345677899999973 24578888999 99999999864 4778999986 55667899
Q ss_pred ccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccce
Q 015015 155 AHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNA 231 (414)
Q Consensus 155 ~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~ 231 (414)
+.|.|.+. ..++..+|++++ +++| +.|+|.|.++ ..|+.|+|+|++.....|+|.||+|+.+|++
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~ 227 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMT-SRPC-----------PTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMR 227 (378)
T ss_pred CCccCceEEEEEEeccceeEEE-EEEC-----------CCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcE
Confidence 99998554 334456677776 5689 9999999765 5688899999999999999999999999999
Q ss_pred EEecCCCchhhhhccCC-CCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 232 IAIAKDPESAFFKRLEG-LQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 232 I~i~~~g~~g~~~rl~g-~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+|++.+ +..++ ..++|++ .+. ..|.+|.|.|+||++++.|+| +|++|.++
T Consensus 228 i~~~g~G-----~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 282 (378)
T PRK14278 228 IRLAAQG-----EVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTV 282 (378)
T ss_pred EEEccCc-----CCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeE
Confidence 9999999 44443 4457887 444 559999999999999999998 99999775
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.9e-46 Score=380.48 Aligned_cols=256 Identities=24% Similarity=0.358 Sum_probs=209.0
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCcccccccccc--c-
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE--G- 90 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~--~- 90 (414)
..|||+||||+++||.+|||+|||+||++||||+|+++ +.|.++|++|++||+||+||.+|+.||+||..+++.. +
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 46999999999999999999999999999999999865 6788999999999999999999999999998765421 0
Q ss_pred -ccccc---cccccCcc--chhhhhhhcc------------ccccceeccchhhHHHHhcCccc--------cccCCCcc
Q 015015 91 -MDMEI---DLSNLGTV--NTMFAALFSK------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGT 144 (414)
Q Consensus 91 -~~~~~---d~s~~gd~--~diF~~~Fg~------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gt 144 (414)
...++ .+..|+++ .++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~-slee~~~G~~~~i~~~r~~~C~~C~G~ 161 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEV-TLSDLINGAEIPVEYDRYETCPHCGGT 161 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEE-EHHHhcCCeEEEEEeeecccCCCCCcc
Confidence 00010 01122221 3788888863 24578899999 99999999854 47789999
Q ss_pred cc-CCcccccccccccee--eeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEE
Q 015015 145 SV-SGKVEKQCAHFFGVT--INDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHF 220 (414)
Q Consensus 145 g~-~g~~~k~C~~C~G~~--i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v 220 (414)
|. .+...++|+.|.|.+ +..+++.+|++++ +++| +.|+|.|.++ ..|+.|+|+|++.....|+|
T Consensus 162 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V 229 (369)
T PRK14282 162 GVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTC-----------ERCGGTGKIPGEYCHECGGSGRIRRRVRTTV 229 (369)
T ss_pred CCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEEC-----------CCCCCcceeCCCCCCCCCCceeEEEEEEEEE
Confidence 86 556678999999844 4556677888776 6699 9999999765 56788999999999999999
Q ss_pred EEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 221 QVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 221 ~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
.||+|+.+|++|+++++++.+ .++..++|++ .+. ..|++|.|.|+||++++.|+| +|++|.++
T Consensus 230 ~Ip~G~~~G~~i~~~g~G~~~----~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~ 295 (369)
T PRK14282 230 KIPAGVEDGTVLRITGGGNAG----YYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTV 295 (369)
T ss_pred EeCCCCCCCCEEEEecccCCC----CCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEE
Confidence 999999999999999999443 2456678886 443 569999999999999999998 99999875
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-46 Score=384.05 Aligned_cols=255 Identities=25% Similarity=0.382 Sum_probs=205.6
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccc----cccc
Q 015015 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEA----IDAE 89 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~----~~~~ 89 (414)
+.+|||+||||+++|+.+|||+|||+||++||||+|++++.|.++|++|++||+|||||++|++||+||+.+ +...
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~ 86 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGR 86 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccc
Confidence 357999999999999999999999999999999999988889999999999999999999999999998642 2110
Q ss_pred ------cc-cc-------ccccc---------ccCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCcc
Q 015015 90 ------GM-DM-------EIDLS---------NLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTV 135 (414)
Q Consensus 90 ------~~-~~-------~~d~s---------~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v 135 (414)
+. .+ ..++. ++++|.++|+.||++ .|.|+.+.|.+ +|+|+|+|++
T Consensus 87 ~~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~l-tLee~~~G~~ 165 (392)
T PRK14279 87 RFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTL-DFVEAAKGVT 165 (392)
T ss_pred cccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEE-EHHHHhCCeE
Confidence 00 00 01111 012355778888762 35689999999 9999999985
Q ss_pred c--------cccCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCC
Q 015015 136 T--------VRPLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSE 205 (414)
Q Consensus 136 ~--------~~~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~ 205 (414)
+ .|+.|.|+|. .+....+|+.|.|.+++.... |++ +.+++| +.|+|.|+++ ..|..
T Consensus 166 ~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~-~~~~~C-----------~~C~G~G~~i~~~C~~ 231 (392)
T PRK14279 166 MPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQ--GAF-GFSEPC-----------TDCRGTGSIIEDPCEE 231 (392)
T ss_pred EEEeeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEe--cce-EEEEec-----------CCCCceeEEeCCcCCC
Confidence 4 4778999986 556678999999977766554 555 346889 9999999765 56778
Q ss_pred CCCceEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEe
Q 015015 206 KTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EAL 282 (414)
Q Consensus 206 C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal 282 (414)
|.|+|++.+...++|.||+|+.+|++|++++.++.+. .+..++|++ .+. ..|.+|.|+|+||++++.|+| +|+
T Consensus 232 C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~----~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 307 (392)
T PRK14279 232 CKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGL----RGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307 (392)
T ss_pred CCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCC----CCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHc
Confidence 9999999999999999999999999999999994432 244557887 333 569999999999999999998 999
Q ss_pred cCcch
Q 015015 283 CAKSY 287 (414)
Q Consensus 283 ~g~s~ 287 (414)
+|.++
T Consensus 308 ~G~~~ 312 (392)
T PRK14279 308 LGSTL 312 (392)
T ss_pred CCceE
Confidence 99774
No 12
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-46 Score=382.10 Aligned_cols=255 Identities=27% Similarity=0.385 Sum_probs=210.9
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc-cc--
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE-GM-- 91 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~-~~-- 91 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|++||+||+++++.. +.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 469999999999999999999999999999999998 57889999999999999999999999999998876532 10
Q ss_pred -c-ccccc-cccCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CC
Q 015015 92 -D-MEIDL-SNLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SG 148 (414)
Q Consensus 92 -~-~~~d~-s~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g 148 (414)
. .+++. +++++|.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|. .+
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~v-tLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~ 160 (380)
T PRK14276 82 GGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNL-DFEEAIFGKEKEVSYNREATCHTCNGSGAKPG 160 (380)
T ss_pred CCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEE-EHHHhcCCeEEEEEeeccccCCCCcCcccCCC
Confidence 0 01111 2345678999999973 24588899999 99999999854 4788999986 55
Q ss_pred ccccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccC
Q 015015 149 KVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRM 225 (414)
Q Consensus 149 ~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G 225 (414)
....+|+.|.|.+. ..+++++|++++ +++| +.|+|.|.++ ..|+.|+|+|++.+...++|.||+|
T Consensus 161 ~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 228 (380)
T PRK14276 161 TSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTC-----------DVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAG 228 (380)
T ss_pred CCCccCCCCCCeeEEEEEEecCCceEEE-EEEC-----------CCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCC
Confidence 66789999998544 445667788887 7799 9999999765 5688899999999999999999999
Q ss_pred CCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 226 DSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 226 ~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+.+|++|++++++++.. .+..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++
T Consensus 229 ~~~G~~i~l~G~G~~~~----~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 289 (380)
T PRK14276 229 VETGQQIRLQGQGEAGF----NGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTV 289 (380)
T ss_pred ccCCcEEEEeccccCCC----CCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeE
Confidence 99999999999995543 233457886 333 459999999999999999998 99999875
No 13
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.1e-46 Score=380.26 Aligned_cols=253 Identities=28% Similarity=0.389 Sum_probs=211.0
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|++||+||.+++......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~-- 79 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGG-- 79 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCC--
Confidence 469999999999999999999999999999999997 57888999999999999999999999999998766432100
Q ss_pred ccccccCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCcccccc
Q 015015 95 IDLSNLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQC 154 (414)
Q Consensus 95 ~d~s~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~C 154 (414)
...++|+++.++|+.||++ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .+..+.+|
T Consensus 80 ~~~~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~v-slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C 158 (371)
T PRK14287 80 GGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTL-EFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETC 158 (371)
T ss_pred CCCccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEE-EHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCccc
Confidence 1112345567899999973 35688999999 99999999854 4788999986 45567789
Q ss_pred ccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccce
Q 015015 155 AHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNA 231 (414)
Q Consensus 155 ~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~ 231 (414)
+.|.|.++ ..++.++|++++ +++| +.|+|.|.++ ..|+.|.|++++.....++|.||+|+.+|+.
T Consensus 159 ~~C~G~G~~~~~~~~~~G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 226 (371)
T PRK14287 159 SHCGGSGQLNVEQNTPFGRVVN-RRVC-----------HHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQ 226 (371)
T ss_pred CCCCCEEEEEEEEecCCceEEE-EEeC-----------CCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCE
Confidence 99998544 445667788876 7799 9999999664 5688899999999999999999999999999
Q ss_pred EEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 232 IAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 232 I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+++++++++. .+..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++
T Consensus 227 i~~~G~G~~~~----~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 281 (371)
T PRK14287 227 LRVSGQGEAGV----NGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEI 281 (371)
T ss_pred EEEccCCcCCC----CCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEE
Confidence 99999995543 344667887 333 569999999999999999998 99999875
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.4e-46 Score=379.35 Aligned_cols=254 Identities=27% Similarity=0.400 Sum_probs=210.0
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
.+|||+||||+++||.+|||+|||+||++||||+++++++|.++|++|++||+||+||.+|+.||+||+++++..+....
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 47999999999999999999999999999999999988889999999999999999999999999999887653211100
Q ss_pred cccc-ccCccchhhhhhhc-c------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccc
Q 015015 95 IDLS-NLGTVNTMFAALFS-K------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVE 151 (414)
Q Consensus 95 ~d~s-~~gd~~diF~~~Fg-~------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~ 151 (414)
.++. .|++|.++|++||+ + .|.|+...+.+ +|+|+|+|+++ .|+.|.|+|. .+...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~l-slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 161 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTL-PFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP 161 (366)
T ss_pred CccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEe-eHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence 0111 13456788888886 1 24578888999 99999999854 4778999986 45557
Q ss_pred cccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccc
Q 015015 152 KQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLN 230 (414)
Q Consensus 152 k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~ 230 (414)
..|+.|.|.++..... |+++ .+++| +.|+|.|+++ ..|..|.|+|++.+...++|.||+|+.+|+
T Consensus 162 ~~C~~C~G~G~~~~~~--G~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQ--GFFS-IRTTC-----------PRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGS 227 (366)
T ss_pred ccCCCcCCeEEEEEEe--eeEE-EEeeC-----------CCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCc
Confidence 7899999977766554 6765 57899 9999999765 567789999999999999999999999999
Q ss_pred eEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 231 AIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 231 ~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+|++++.++.+. ++..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++
T Consensus 228 ~i~~~g~G~~~~----~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 283 (366)
T PRK14294 228 RLRLRGEGEAGV----RGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQI 283 (366)
T ss_pred EEEEccCccCCC----CCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeE
Confidence 999999995443 355678886 333 569999999999999999998 99999774
No 15
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6e-46 Score=376.34 Aligned_cols=255 Identities=25% Similarity=0.371 Sum_probs=211.2
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP-EAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
.|||+||||+++||.+|||+|||+||++||||++++++ .|.++|++|++||+||+||.+|+.||+||+.+++..+..+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 69999999999999999999999999999999998765 78899999999999999999999999999877653211111
Q ss_pred -ccccccCccchhhhhhhccc------------------cccceeccchhhHHHHhcCccc--------cccCCCccccC
Q 015015 95 -IDLSNLGTVNTMFAALFSKL------------------GVPIKTTISANVLEEALNGTVT--------VRPLPIGTSVS 147 (414)
Q Consensus 95 -~d~s~~gd~~diF~~~Fg~~------------------G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~~ 147 (414)
.++..++++.++|..||++. |.|+...|.+ +|+|+|+|+++ .|+.|.|+|..
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~l-sLee~~~G~~~~i~~~r~~~C~~C~G~g~~ 161 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDI-SLEDAYYGTEKRIKYRRNAMCPDCSGTGAK 161 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEe-cHHHhcCCEEEEEEeeecccCCCCccccCC
Confidence 11122456778888887631 4588889999 99999999854 57789999874
Q ss_pred CccccccccccceeeeeeeccceeEEE-EeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccC
Q 015015 148 GKVEKQCAHFFGVTINDQQAEAGIVVR-VTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRM 225 (414)
Q Consensus 148 g~~~k~C~~C~G~~i~~~~~~~G~v~~-~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G 225 (414)
.....+|+.|.|.++......+|++.+ .+.+| +.|+|.|.++ ..|..|.|+|++.....|+|.||+|
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G 230 (365)
T PRK14290 162 NGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTC-----------RTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKG 230 (365)
T ss_pred CCCCccCCCCCCcCEEEEEeccCeEEEEEEEeC-----------CCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCC
Confidence 446778999999776665556777644 45788 9999999765 5688899999999999999999999
Q ss_pred CCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 226 DSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 226 ~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
+.+|++|+|+++++ . ++..++|++ .+. ..|+.|.|.|+||++++.|+| +|++|.++.
T Consensus 231 ~~~G~~i~~~g~G~-----~-~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 290 (365)
T PRK14290 231 ATDNLRLRVKGKGQ-----S-YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIE 290 (365)
T ss_pred CCCCcEEEEccccC-----C-CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEE
Confidence 99999999999994 3 477789997 333 559999999999999999998 999998753
No 16
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.1e-46 Score=377.54 Aligned_cols=254 Identities=27% Similarity=0.378 Sum_probs=209.3
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|++||+||+++++.......
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 81 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGG 81 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCC
Confidence 369999999999999999999999999999999998 5778999999999999999999999999999877653210000
Q ss_pred ---cccc-ccCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCcc
Q 015015 95 ---IDLS-NLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKV 150 (414)
Q Consensus 95 ---~d~s-~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~ 150 (414)
.++. +| +|.++|+.|||+ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .+..
T Consensus 82 ~~~~~~~~~~-~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~v-tLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~ 159 (376)
T PRK14280 82 FGGGDFGGGF-GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTL-TFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTS 159 (376)
T ss_pred CCCCCccccc-cchhhHHHHhCCccccCcccccccccCEEEEEEE-EHHHHhCCceeEEEEeeeccCCCCCCcccCCCCC
Confidence 0111 12 467899999962 35688999999 99999999864 4778999986 5566
Q ss_pred ccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCC
Q 015015 151 EKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDS 227 (414)
Q Consensus 151 ~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~ 227 (414)
...|+.|.|.+. ..+++++|++++ +++| +.|+|.|.++ ..|+.|+|+|++.+...++|.||+|+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~ 227 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVN-RQTC-----------PHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVD 227 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEE-EEEc-----------CCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCc
Confidence 789999998554 345566788875 7799 9999999765 568889999999999999999999999
Q ss_pred ccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 228 TLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 228 ~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
++++|++++++++.. .+..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++
T Consensus 228 ~G~~i~l~G~G~~~~----~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 286 (376)
T PRK14280 228 NGQQIRVSGEGEPGV----NGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEI 286 (376)
T ss_pred CCcEEEEcccccCCC----CCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEE
Confidence 999999999995432 345567887 333 569999999999999999998 99999775
No 17
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.3e-46 Score=379.74 Aligned_cols=252 Identities=28% Similarity=0.353 Sum_probs=206.5
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc-c--cc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE-G--MD 92 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~-~--~~ 92 (414)
.|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|+.||+||.+++... + ..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 38999999999999999999999999999999999888899999999999999999999999999998765321 1 00
Q ss_pred ccc-c-----------ccc-cCccchhhhhhhcc---------------ccccceeccchhhHHHHhcCccc--------
Q 015015 93 MEI-D-----------LSN-LGTVNTMFAALFSK---------------LGVPIKTTISANVLEEALNGTVT-------- 136 (414)
Q Consensus 93 ~~~-d-----------~s~-~gd~~diF~~~Fg~---------------~G~di~~~I~~~sLeEa~~G~v~-------- 136 (414)
..+ + +++ |+++.++|+.||++ .|.|+...|.+ +|+|+|+|+++
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~v-slee~~~G~~~~i~~~r~~ 159 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITL-SFEEAAKGVEKELLVSGYK 159 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEE-EHHHHhCCeeEEEEEeeec
Confidence 000 0 110 12235778777753 24578899999 99999999864
Q ss_pred cccCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeee
Q 015015 137 VRPLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAG 214 (414)
Q Consensus 137 ~~~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~ 214 (414)
.|+.|.|+|. .+...+.|+.|.|.+.+..+. |+++ .+++| +.|+|.|.++ ..|+.|+|+|++.+
T Consensus 160 ~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~ 225 (391)
T PRK14284 160 SCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFS-MASTC-----------PECGGEGRVITDPCSVCRGQGRIKD 225 (391)
T ss_pred cCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEE-EEEEC-----------CCCCCCCcccCCcCCCCCCcceecc
Confidence 4778999986 456678999999977766554 6655 57799 9999999765 56888999999999
Q ss_pred eEEEEEEEccCCCccceEEecCCCchhhhhccC-CCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 215 MYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLE-GLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 215 ~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~-g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
...|+|.||+|+.+|++|++++++ +..+ +..++|++ .+. ..|.+|.|.|+||++++.|+| +||+|.++
T Consensus 226 ~~~l~V~Ip~G~~~G~~i~~~g~G-----~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 297 (391)
T PRK14284 226 KRSVHVHIPAGVDSGMRLKMEGYG-----DAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKK 297 (391)
T ss_pred eEEEEEEECCCCCCCCEEEEeccc-----cCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeE
Confidence 999999999999999999999999 4444 45568887 443 559999999999999999998 99999875
No 18
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.1e-45 Score=376.10 Aligned_cols=256 Identities=30% Similarity=0.435 Sum_probs=211.0
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccc-c-
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGM-D- 92 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~-~- 92 (414)
..|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|++||+||.++++..+. .
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999887653211 0
Q ss_pred --c-cccccccCccchhhhhhhcc-------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-C
Q 015015 93 --M-EIDLSNLGTVNTMFAALFSK-------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-S 147 (414)
Q Consensus 93 --~-~~d~s~~gd~~diF~~~Fg~-------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~ 147 (414)
+ .+++++++++.++|+.||++ .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~v-sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINL-TFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEE-EHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 0 01112234567899999863 24588999999 99999999854 4778999986 5
Q ss_pred Cccccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEcc
Q 015015 148 GKVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYR 224 (414)
Q Consensus 148 g~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~ 224 (414)
+.....|+.|.|.+. ..++.++|++++ +++| +.|+|.|.++ ..|..|+|+|++.+...++|.||+
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~ 229 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFVS-TTTC-----------DKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPA 229 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeEE-EEeC-----------CCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCC
Confidence 666789999998554 345667787665 7799 9999999765 567889999999999999999999
Q ss_pred CCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 225 MDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 225 G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+.+|+.|+++++++.+. .+..++|++ .+. .-|..|.|.|+||++++.|+| +||+|.++
T Consensus 230 G~~~G~~I~l~g~G~~~~----~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~ 291 (380)
T PRK14297 230 GVDTGNVIPLRGQGEHGK----NGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEI 291 (380)
T ss_pred CCCCCcEEEEecCccCCC----CCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcE
Confidence 999999999999995432 344567886 333 458899999999999999998 99999775
No 19
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.8e-46 Score=378.38 Aligned_cols=256 Identities=27% Similarity=0.409 Sum_probs=208.0
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|+.||+||.++++..+....
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999877653211000
Q ss_pred ----ccc-----c-ccCccchhhhhhhcc--------------ccccceeccchhhHHHHhcCccc--------cccCCC
Q 015015 95 ----IDL-----S-NLGTVNTMFAALFSK--------------LGVPIKTTISANVLEEALNGTVT--------VRPLPI 142 (414)
Q Consensus 95 ----~d~-----s-~~gd~~diF~~~Fg~--------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~ 142 (414)
.++ . .++++.++|..||+. .|.|+.+.|.+ +|+|+|+|+++ .|+.|.
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~v-tLee~~~G~~~~v~~~r~~~C~~C~ 162 (386)
T PRK14277 84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLEL-TFEEAAFGTEKEIEVERFEKCDVCK 162 (386)
T ss_pred CcCCCCccccCccccccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEE-EHHHHhCCeEEEEEEEeeccCCCCC
Confidence 010 0 123444556655541 24578899999 99999999864 477899
Q ss_pred cccc-CCccccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEE
Q 015015 143 GTSV-SGKVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFL 218 (414)
Q Consensus 143 Gtg~-~g~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l 218 (414)
|+|. .+....+|+.|.|.++ ..+++++|++++. ++| +.|+|.|.++ ..|+.|+|+|++.+...+
T Consensus 163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l 230 (386)
T PRK14277 163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTC-----------DRCHGEGKIITDPCNKCGGTGRIRRRRKI 230 (386)
T ss_pred CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EEC-----------CCCCcceeeccCCCCCCCCCcEEeeeeEE
Confidence 9986 4566789999998544 4456678888874 699 9999999765 568889999999999999
Q ss_pred EEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 219 HFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 219 ~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+|.||+|+.+|++|++++++++.. .+..++|++ .+. ..|++|.|.|+||++++.|++ +||+|.++
T Consensus 231 ~V~Ip~G~~~G~~i~~~g~G~~~~----~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 298 (386)
T PRK14277 231 KVNIPAGIDDGQMITLRGEGEPGI----KGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEI 298 (386)
T ss_pred EEecCCCccCCcEEEEccccccCC----CCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEE
Confidence 999999999999999999995432 345568887 333 569999999999999999998 99999775
No 20
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.1e-46 Score=376.14 Aligned_cols=254 Identities=28% Similarity=0.395 Sum_probs=209.2
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||+||.++++..+...+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999988889999999999999999999999999999887653211111
Q ss_pred c-cc-cccCccchhhhhhhcc------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccc
Q 015015 95 I-DL-SNLGTVNTMFAALFSK------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVE 151 (414)
Q Consensus 95 ~-d~-s~~gd~~diF~~~Fg~------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~ 151 (414)
+ +. ..|+.|.++|+.||+. .|.|+.+.|.+ +|+|+|+|+++ .|+.|.|+|. .+..+
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~v-tLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 161 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTV-SFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSP 161 (373)
T ss_pred cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEec-cHHHHhCCceEEEEeeecccCCCCCCcccCCCCCC
Confidence 1 01 1134566788888761 35688999999 99999999864 4778999986 45667
Q ss_pred cccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccc
Q 015015 152 KQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLN 230 (414)
Q Consensus 152 k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~ 230 (414)
.+|+.|.|.+.+.... |++++ +++| +.|+|.|.++ ..|..|+|+|++.+...++|.||+|+.+|+
T Consensus 162 ~~C~~C~G~G~v~~~~--G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 227 (373)
T PRK14301 162 ETCRHCGGSGQVRQSQ--GFFQI-AVPC-----------PVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGS 227 (373)
T ss_pred cccCCccCeeEEEEEe--eeEEE-EEeC-----------CCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCC
Confidence 8999999977766554 66654 8899 9999999765 568889999999999999999999999999
Q ss_pred eEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 231 AIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 231 ~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+|+|++.++++. .+..++|++ .+. ..|..|.|.|+||++++.|+| +||+|.++
T Consensus 228 ~i~~~g~G~~~~----~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~ 283 (373)
T PRK14301 228 RLRLRGEGEPGV----HGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRI 283 (373)
T ss_pred EEEEeccccCCC----CCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeE
Confidence 999999994432 245567886 333 558899999999999999998 99999875
No 21
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-45 Score=374.79 Aligned_cols=254 Identities=29% Similarity=0.436 Sum_probs=209.5
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
.+|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||++|+||.+|+.||+||..+++..+....
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 46999999999999999999999999999999999888889999999999999999999999999999877653211000
Q ss_pred c-cccccCc-cchhhhhhhcc----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccccc
Q 015015 95 I-DLSNLGT-VNTMFAALFSK----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQ 153 (414)
Q Consensus 95 ~-d~s~~gd-~~diF~~~Fg~----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~ 153 (414)
+ ++++|++ |.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|. .+.....
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~v-sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~ 161 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEI-TLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKT 161 (371)
T ss_pred CCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEe-ehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCcc
Confidence 0 1122333 56788888863 35689999999 99999999854 4778999986 4556678
Q ss_pred cccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCccceE
Q 015015 154 CAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAI 232 (414)
Q Consensus 154 C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I 232 (414)
|+.|.|.+++.... |+++ .+++| +.|+|.|.++ ..|+.|.|+|++.....++|.||+|+.+|++|
T Consensus 162 C~~C~G~G~~~~~~--g~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i 227 (371)
T PRK10767 162 CPTCHGAGQVRMQQ--GFFT-VQQTC-----------PTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI 227 (371)
T ss_pred CCCCCCeeEEEEee--ceEE-EEEeC-----------CCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEE
Confidence 99999977665554 6665 57799 9999999765 56888999999999999999999999999999
Q ss_pred EecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 233 AIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 233 ~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
++++.++.+ .++..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++
T Consensus 228 ~~~g~G~~~----~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~ 281 (371)
T PRK10767 228 RLSGEGEAG----ERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEI 281 (371)
T ss_pred EEecCccCC----CCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeE
Confidence 999999443 2345678886 333 569999999999999999998 99999875
No 22
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-45 Score=375.81 Aligned_cols=256 Identities=26% Similarity=0.400 Sum_probs=208.4
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCc----ccccccccc
Q 015015 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDN----AGFEAIDAE 89 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~----~G~~~~~~~ 89 (414)
+..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||+ ||++++...
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~ 86 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPG 86 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccC
Confidence 3579999999999999999999999999999999998888899999999999999999999999999 998776421
Q ss_pred ---c--cccccc----cc---------cc-Cccchhhhhhhcc--------ccccceeccchhhHHHHhcCccc------
Q 015015 90 ---G--MDMEID----LS---------NL-GTVNTMFAALFSK--------LGVPIKTTISANVLEEALNGTVT------ 136 (414)
Q Consensus 90 ---~--~~~~~d----~s---------~~-gd~~diF~~~Fg~--------~G~di~~~I~~~sLeEa~~G~v~------ 136 (414)
+ .++.++ |+ ++ +.|.++|+.||++ .|.|+.+.|.+ +|+|+|+|+++
T Consensus 87 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~l-sLee~~~G~~k~i~~~r 165 (389)
T PRK14295 87 PGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTL-SFTEAIDGATVPLRLTS 165 (389)
T ss_pred CCCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEE-EHHHHhCCceEEEEeec
Confidence 0 000011 10 01 1245677777762 46689999999 99999999854
Q ss_pred --cccCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEe
Q 015015 137 --VRPLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTS 212 (414)
Q Consensus 137 --~~~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~ 212 (414)
.|+.|.|+|. .+..+..|+.|.|.+++.... |+++ .+++| +.|+|.|.++ ..|..|.|+|++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~~ 231 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGFS-LSEPC-----------PDCKGRGLIADDPCLVCKGSGRA 231 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cceE-EEEec-----------CCCcceeEEeccCCCCCCCCceE
Confidence 4778999986 566678999999977766555 4443 56789 9999999765 568889999999
Q ss_pred eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 213 AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 213 ~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
.+...++|.||+|+.+|++|++++.++... ++..++|++ .+. ..|++|.|.|+||++++.|+| +||+|.++.
T Consensus 232 ~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~----~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~ 306 (389)
T PRK14295 232 KSSRTMQVRIPAGVSDGQRIRLRGKGAPGE----RGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVR 306 (389)
T ss_pred eeeeEEEEEeCCCCCCCCEEEEcccccCCC----CCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEE
Confidence 999999999999999999999999994332 355678887 333 569999999999999999998 999997753
No 23
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5.7e-45 Score=372.73 Aligned_cols=256 Identities=28% Similarity=0.390 Sum_probs=204.9
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccc-cc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGM-DM 93 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~-~~ 93 (414)
..|||+||||+++|+.+|||+|||+||++||||++++++.|.++|++|++||++|+||.+|+.||+||.++++.... ..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~ 81 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGG 81 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999887653110 00
Q ss_pred ccccc-ccCccchhh---hhhhcc-----------------------------ccccceeccchhhHHHHhcCccc----
Q 015015 94 EIDLS-NLGTVNTMF---AALFSK-----------------------------LGVPIKTTISANVLEEALNGTVT---- 136 (414)
Q Consensus 94 ~~d~s-~~gd~~diF---~~~Fg~-----------------------------~G~di~~~I~~~sLeEa~~G~v~---- 136 (414)
...++ +..+++++| ..||++ .|.|+.+.|.+ +|+|+|+|+++
T Consensus 82 ~~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~v-tLee~~~G~~~~i~~ 160 (397)
T PRK14281 82 GPGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKL-TLEEIAKGVEKTLKI 160 (397)
T ss_pred CCCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEe-EHHHHhCCeEEEEEE
Confidence 00010 111233443 355541 24578899999 99999999864
Q ss_pred ----cccCCCccccCCccccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCc
Q 015015 137 ----VRPLPIGTSVSGKVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGK 209 (414)
Q Consensus 137 ----~~~lc~Gtg~~g~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~ 209 (414)
.|+.|.|+|........|+.|.|.+. ..+++.+|++++ +++| +.|+|.|.++ ..|+.|.|+
T Consensus 161 ~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~ 228 (397)
T PRK14281 161 KKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITAC-----------PTCGGEGRVVKDRCPACYGE 228 (397)
T ss_pred EeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEec-----------CCCcceeeeeCCCCCCCCCC
Confidence 47789999864445778999998544 444556787776 6699 9999999765 567789999
Q ss_pred eEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcc
Q 015015 210 VTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKS 286 (414)
Q Consensus 210 g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s 286 (414)
|++.....++|.||+|+.+|++|++++.++.+. .+..++|++ .+. ..|.+|.|.|+||++++.|+| +||+|..
T Consensus 229 g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~----~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~ 304 (397)
T PRK14281 229 GIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGP----RGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTK 304 (397)
T ss_pred ccEecceEEEEecCCCCCCCCEEEEecccccCC----CCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCe
Confidence 999999999999999999999999999994432 245678887 443 559999999999999999998 9999977
Q ss_pred h
Q 015015 287 Y 287 (414)
Q Consensus 287 ~ 287 (414)
+
T Consensus 305 ~ 305 (397)
T PRK14281 305 V 305 (397)
T ss_pred E
Confidence 4
No 24
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=6.5e-45 Score=370.74 Aligned_cols=253 Identities=32% Similarity=0.453 Sum_probs=205.8
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc--
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD-- 92 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~-- 92 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||+||..++...+..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNK-NPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 469999999999999999999999999999999998 47888999999999999999999999999998776532110
Q ss_pred cccccc--ccCccchhhhhh---------hcc---------------ccccceeccchhhHHHHhcCccc--------cc
Q 015015 93 MEIDLS--NLGTVNTMFAAL---------FSK---------------LGVPIKTTISANVLEEALNGTVT--------VR 138 (414)
Q Consensus 93 ~~~d~s--~~gd~~diF~~~---------Fg~---------------~G~di~~~I~~~sLeEa~~G~v~--------~~ 138 (414)
....++ .+++++++|..| |++ .|.|+.+.|.+ +|+|+|+|+++ .|
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~v-sLee~~~G~~~~i~~~r~~~C 159 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEI-SLEEAYTGTTVSLEVPRYVPC 159 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEE-EHHHhhCCEEEEEEEeeeccC
Confidence 001111 123444555544 221 35588889999 99999999854 47
Q ss_pred cCCCcccc-CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccceeccCCCCCCceEeeeeEE
Q 015015 139 PLPIGTSV-SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYF 217 (414)
Q Consensus 139 ~lc~Gtg~-~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~~s~C~G~g~~~~~~~ 217 (414)
+.|.|+|. .+....+|+.|.|.++.... .|+ ++.+++| +.|+|.|.+...|+.|+|.|++.+...
T Consensus 160 ~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~-~~~~~~C-----------~~C~G~G~~~~~C~~C~G~g~v~~~~~ 225 (382)
T PRK14291 160 EACGGTGYDPGSGEKVCPTCGGSGEIYQR--GGF-FRISQTC-----------PTCGGEGVLREPCSKCNGRGLVIKKET 225 (382)
T ss_pred CCCccccCCCCCCCccCCCCCCceEEEEe--cce-EEEEecC-----------CCCCCceEEccCCCCCCCCceEEeeeE
Confidence 78999986 55667899999997766554 244 4457899 999999987778999999999999999
Q ss_pred EEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 218 LHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 218 l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|+|.||+|+.+|++|+|+++++.+ .++..++|++ .+. ..|+.|.|.|+||++++.|+| +|++|.++
T Consensus 226 l~V~Ip~G~~~G~~i~~~g~G~~~----~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~ 294 (382)
T PRK14291 226 IKVRIPPGVDNGSKLRVPGKGHAG----RFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTEL 294 (382)
T ss_pred EEEEeCCCCCCCCEEEEecCcCCC----CCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEE
Confidence 999999999999999999999443 2467788997 444 459999999999999999998 99999875
No 25
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=8.1e-45 Score=366.91 Aligned_cols=253 Identities=28% Similarity=0.421 Sum_probs=210.3
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc--cc
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD--ME 94 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~--~~ 94 (414)
|||+||||+++||.++||+|||+||++||||+++ ++.|.++|++|++||+||+||.+|+.||+||..+++..+.. ..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 7999999999999999999999999999999997 67788999999999999999999999999998876532111 00
Q ss_pred ---ccccccCccchhhhhhhcc-------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCc
Q 015015 95 ---IDLSNLGTVNTMFAALFSK-------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGK 149 (414)
Q Consensus 95 ---~d~s~~gd~~diF~~~Fg~-------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~ 149 (414)
++.++++++.++|+.||++ .|.|+.+.+.+ +|+|+|+|+++ .|+.|.|+|. .+.
T Consensus 80 ~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~v-sLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (354)
T TIGR02349 80 FNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLEL-TFEEAVFGVEKEIEIPRKESCETCHGTGAKPGT 158 (354)
T ss_pred cCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEE-EHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCC
Confidence 1112355677899999973 24578899999 99999999854 4778999986 445
Q ss_pred cccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCC
Q 015015 150 VEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMD 226 (414)
Q Consensus 150 ~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~ 226 (414)
....|+.|.|.++ ..+++++|++++ +++| +.|+|.|.++ ..|..|.|+|++.+...|+|.||+|+
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~ 226 (354)
T TIGR02349 159 DPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTC-----------PTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGV 226 (354)
T ss_pred CCccCCCCCCeeEEEEEEeccCCceEE-EEec-----------CCCCCcceecCCCCCCCCCCcEecccceEEEEECCCC
Confidence 5778999998544 445667888887 6799 9999999765 56788999999999999999999999
Q ss_pred CccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 227 STLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 227 ~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
.+|++|+|+++++.. .++..++|++ .+. ..|..|.|.|+||++++.|+| +||+|.++
T Consensus 227 ~~G~~i~~~g~G~~~----~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~ 286 (354)
T TIGR02349 227 DTGQRLRVSGKGNAG----ENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEI 286 (354)
T ss_pred CCCCEEEEecCccCC----CCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeE
Confidence 999999999999443 3455678887 443 458899999999999999998 99999874
No 26
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=356.61 Aligned_cols=245 Identities=31% Similarity=0.461 Sum_probs=210.5
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccccc
Q 015015 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDM 93 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~ 93 (414)
.+..||+||||+++||.+|||+|||+||++|||||||+ |.++|++|..||||||||++|++||+||+++++.++++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~ 78 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG 78 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC
Confidence 35689999999999999999999999999999999985 779999999999999999999999999999986655432
Q ss_pred cccccccCccchhhhhhhcc-------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccccccccc
Q 015015 94 EIDLSNLGTVNTMFAALFSK-------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQCAHF 157 (414)
Q Consensus 94 ~~d~s~~gd~~diF~~~Fg~-------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~C~~C 157 (414)
+++.|.++|+ |++ +|.++.+.|.+ +|+++|.|.+. +|+.|.|.|- +++.+ .|..|
T Consensus 79 -----g~~~f~~~F~--~g~~~~~~~~rg~~~~~~~~~-~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~C~~C 149 (337)
T KOG0712|consen 79 -----GFGGFSQFFG--FGGNGGRGRQRGKDVVHQLKV-TLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-KCTTC 149 (337)
T ss_pred -----CCccHHHhcc--CCCcCccccccCCCceEEEEE-EHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-CCCCC
Confidence 2223444444 332 46799999999 99999999643 5788999864 55554 69999
Q ss_pred cc--eeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee---ccCCCCCCceEeeeeEEEEEEEccCCCccceE
Q 015015 158 FG--VTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL---QEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAI 232 (414)
Q Consensus 158 ~G--~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~---~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I 232 (414)
.| +.+..+++++||+++.+..| ..|+|+|.++ ..|..|.|.+++...+.++|.|++|++++..|
T Consensus 150 ~GsGv~~~~~~~gPg~~qs~q~~C-----------~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki 218 (337)
T KOG0712|consen 150 RGSGVQTRTRQMGPGMVQSPQLVC-----------DSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKI 218 (337)
T ss_pred CCCCceeEEEeccccccccceeEe-----------ccCCCccccccccccCcccccchhhhhhheeeccccCCCccccee
Confidence 97 56677899999999999999 9999999873 45788999999999999999999999999999
Q ss_pred EecCCCchhhhhccCCCCCCcce-eccC-CCeeEEEeCCceeEecCccE-EEecCcc
Q 015015 233 AIAKDPESAFFKRLEGLQPCEVS-ELKA-GTHIFAVYGDNFFKTATYTI-EALCAKS 286 (414)
Q Consensus 233 ~i~~~g~~g~~~rl~g~~~~~~~-~i~~-gd~~f~r~gdnl~~~~~isl-eal~g~s 286 (414)
.+.+++ +..++..|+|++ .+.+ .|..|.|.++||++...++| +||||+.
T Consensus 219 ~f~gea-----dea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~ 270 (337)
T KOG0712|consen 219 TFKGEA-----DEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQ 270 (337)
T ss_pred eeeeee-----eecCCCcCccEEEEecccccccceecccccceeeecchhhccccce
Confidence 999999 888899999998 4444 48999999999999999997 9999954
No 27
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-43 Score=358.99 Aligned_cols=253 Identities=23% Similarity=0.323 Sum_probs=203.9
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccc-cccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEG-MDME 94 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~-~~~~ 94 (414)
.|||+||||+++||.+|||+|||+||++||||+++ ++.+.++|++|++||++|+||.+|+.||+||.++++... ....
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 69999999999999999999999999999999997 577889999999999999999999999999987765310 0000
Q ss_pred ccccccC-c----cchhhhhhhcc-----------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCc
Q 015015 95 IDLSNLG-T----VNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGK 149 (414)
Q Consensus 95 ~d~s~~g-d----~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~ 149 (414)
...++|+ + |.++|+.+|++ .|.++...+.+ +|+|+|+|+++ .|+.|.|+|. .+.
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~-sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~ 160 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTI-NLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGE 160 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEE-EHHHHhCCceEEEEeeeccccCCCCCcccCCCC
Confidence 0011111 2 33455554442 35578889998 99999999864 4778999986 556
Q ss_pred cccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCc
Q 015015 150 VEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDST 228 (414)
Q Consensus 150 ~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~ 228 (414)
....|+.|.|.+.+... .|+++ ++.+| +.|+|.|.++ ..|..|+|.|++.+...++|.||+|+.+
T Consensus 161 ~~~~C~~C~G~G~~~~~--~g~~~-~~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 226 (372)
T PRK14300 161 TVTTCDACSGVGATRMQ--QGFFT-IEQAC-----------HKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVEN 226 (372)
T ss_pred CCccCCCccCeEEEEEe--eceEE-EEEeC-----------CCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCC
Confidence 67899999997766544 37776 57799 9999999664 6688899999999999999999999999
Q ss_pred cceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 229 LNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 229 g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
|++|++++.++.+. ++..++|++ .+. ..|..|.|.|+||++++.|+| +||+|.++.
T Consensus 227 G~~i~l~g~G~~~~----~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~ 285 (372)
T PRK14300 227 GTRIRHTGEGEAGI----RGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIE 285 (372)
T ss_pred CcEEEEeccccCCC----CCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEE
Confidence 99999999994432 466678887 333 568999999999999999998 999997643
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.3e-43 Score=358.98 Aligned_cols=255 Identities=29% Similarity=0.418 Sum_probs=206.1
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccccc-
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDM- 93 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~- 93 (414)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|++||+||+++++..+...
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 569999999999999999999999999999999998 578999999999999999999999999999987664211100
Q ss_pred --ccc----ccccC-ccchhhhhh-hcc-------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCc
Q 015015 94 --EID----LSNLG-TVNTMFAAL-FSK-------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGK 149 (414)
Q Consensus 94 --~~d----~s~~g-d~~diF~~~-Fg~-------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~ 149 (414)
..+ +++++ ++.++|..+ |++ .|.++.+.+.+ +|+|+|+|+++ .|+.|.|+|. .+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~v-sLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 161 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEI-TLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGS 161 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeee-eHHHHhCCcceEEEeeeeccCCCCCccccCCCC
Confidence 001 12221 345666665 542 46689999999 99999999864 4778999975 556
Q ss_pred cccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCC
Q 015015 150 VEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMD 226 (414)
Q Consensus 150 ~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~ 226 (414)
....|+.|.|.++ ..++.++|++++ +++| +.|+|.|..+ ..|..|.|+|++.+...+.|.||+|+
T Consensus 162 ~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~ 229 (378)
T PRK14283 162 EVKTCPTCGGTGQVKQVRNTILGQMMN-VTTC-----------PDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGV 229 (378)
T ss_pred CCccCCCcCCccEEEEEEeccCceEEE-EEEC-----------CCCCccceecCCCCCCCCCceeeccceeEEEEECCCC
Confidence 6778999998544 445666788765 5699 9999999664 66888999999999999999999999
Q ss_pred CccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 227 STLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 227 ~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
.+|++|++++.|++.. .+..++|++ .+. ..|..|.|.|+||++++.|+| +|++|..+
T Consensus 230 ~~G~~i~l~g~G~~~~----~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~ 289 (378)
T PRK14283 230 ETGSRLRVSGEGEMGD----RGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTV 289 (378)
T ss_pred CCCcEEEEeccccCCC----CCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeE
Confidence 9999999999994432 245567886 333 559999999999999999998 99999775
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-42 Score=351.93 Aligned_cols=254 Identities=26% Similarity=0.381 Sum_probs=206.5
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||+||+||.+|++||.||.++++... ..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~- 78 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GF- 78 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-Cc-
Confidence 369999999999999999999999999999999997 577889999999999999999999999999987665321 10
Q ss_pred ccccccCccchhhhhhhcc-----------------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CC
Q 015015 95 IDLSNLGTVNTMFAALFSK-----------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SG 148 (414)
Q Consensus 95 ~d~s~~gd~~diF~~~Fg~-----------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g 148 (414)
.+.+++++|.++|..||++ .|.++...+.+ +|+|+|+|+++ .|+.|.|+|. .+
T Consensus 79 ~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~v-sLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~ 157 (374)
T PRK14293 79 PDMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKL-DFREAIFGGEKEIRIPHLETCETCRGSGAKPG 157 (374)
T ss_pred CCcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEe-eHHHHhCCceEEEEeeccccCCCCCCcCCCCC
Confidence 0112234566788888752 13478888888 99999999854 4778999886 45
Q ss_pred ccccccccccceeee--eeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccC
Q 015015 149 KVEKQCAHFFGVTIN--DQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRM 225 (414)
Q Consensus 149 ~~~k~C~~C~G~~i~--~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G 225 (414)
.....|+.|.|.++. .++.++|++++ +++| +.|+|.|.++ ..|..|.|.|++.....++|.||+|
T Consensus 158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG 225 (374)
T PRK14293 158 TGPTTCSTCGGAGQVRRATRTPFGSFTQ-VSEC-----------PTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAG 225 (374)
T ss_pred CCCeeCCCCCCcceEEEEEecCcceEEE-EeeC-----------CCCCcceeEeccCCCCCCCCcccccceEEEEEeCCC
Confidence 557789999995553 44566788876 6799 9999999764 5688899999999999999999999
Q ss_pred CCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 226 DSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 226 ~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
+.+|+.|++++.|++.. ++..++|++ .+. .-|..|.|.|+||++++.|+| +|++|.++.
T Consensus 226 ~~~G~~i~l~g~G~~~~----~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~ 287 (374)
T PRK14293 226 VDTGTRLRVSGEGDAGL----RGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLE 287 (374)
T ss_pred CCCCCEEEEccCccCCC----CCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEE
Confidence 99999999999994432 345567886 333 347799999999999999998 999997753
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.8e-42 Score=351.04 Aligned_cols=257 Identities=23% Similarity=0.317 Sum_probs=204.2
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccc--
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMD-- 92 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~-- 92 (414)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||++|+||.+|++||+||..+++.....
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 469999999999999999999999999999999999888999999999999999999999999999998766532100
Q ss_pred c---cccccc-cCccchhhhhhhcc-----------------ccccceeccchhhHHHHhcCccc--------cccCCCc
Q 015015 93 M---EIDLSN-LGTVNTMFAALFSK-----------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIG 143 (414)
Q Consensus 93 ~---~~d~s~-~gd~~diF~~~Fg~-----------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~G 143 (414)
+ ..+++. |..|+++|+.+|++ .|.++.+.+.+ +|+|+|+|+++ .|+.|.|
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~v-sLee~~~G~~~~i~~~r~~~C~~C~G 162 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKL-NLKEISTGVEKKFKVKKYVPCSHCHG 162 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEE-EHHHhhCCeEEEEEEEeecccCCCCC
Confidence 0 001100 11122334333211 24578889999 99999999854 4778999
Q ss_pred ccc-CCccccccccccceee--eeeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEE
Q 015015 144 TSV-SGKVEKQCAHFFGVTI--NDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLH 219 (414)
Q Consensus 144 tg~-~g~~~k~C~~C~G~~i--~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~ 219 (414)
+|. .......|+.|.|.+. ..+++++|+++. +.+| +.|+|.|.++ ..|..|.|.|++.+...++
T Consensus 163 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~ 230 (386)
T PRK14289 163 TGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTC-----------PTCNGEGKIIKKKCKKCGGEGIVYGEEVIT 230 (386)
T ss_pred CCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEec-----------CCCCccccccCcCCCCCCCCcEEeeeEEEE
Confidence 986 4556789999998544 445566788875 7899 9999999765 5688899999999999999
Q ss_pred EEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 220 FQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 220 v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
|.||+|+.+|+.|+++++|++. .++..++|++ .+. .-|..|.|+++||++++.|+| +|++|.++.
T Consensus 231 V~Ip~G~~~G~~i~l~g~G~~~----~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~ 298 (386)
T PRK14289 231 VKIPAGVAEGMQLSMNGKGNAG----KHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVE 298 (386)
T ss_pred EEeCCCCCCCCEEEEeccccCC----CCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEE
Confidence 9999999999999999999442 2356678887 343 347789999999999999998 999997753
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.4e-41 Score=345.19 Aligned_cols=250 Identities=26% Similarity=0.286 Sum_probs=202.3
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccccccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDMEI 95 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~~ 95 (414)
.|||+||||+++||.++||+|||+||++||||+++ ++.|.++|++|++||+||+||.+|+.||+||.++....+ . ..
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~-~-~~ 78 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMP-G-GD 78 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccccc-C-Cc
Confidence 49999999999999999999999999999999997 678899999999999999999999999999986532110 0 01
Q ss_pred ccccc-Cccchhhhhhhcc-------------ccccceeccchhhHHHHhcCccc--------cccCCCccccCC--ccc
Q 015015 96 DLSNL-GTVNTMFAALFSK-------------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSVSG--KVE 151 (414)
Q Consensus 96 d~s~~-gd~~diF~~~Fg~-------------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~~g--~~~ 151 (414)
.++++ .++.++|..||++ .|.++...+.+ +|+|+++|+++ .|+.|.|+|... ...
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~-sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~ 157 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARI-TLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPP 157 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEec-cHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCC
Confidence 11221 1345888888873 23478888998 99999999854 477899998633 236
Q ss_pred cccccccceeee--eeeccceeEEEEeeeccCcceeeecccCCCCccccee-ccCCCCCCceEeeeeEEEEEEEccCCCc
Q 015015 152 KQCAHFFGVTIN--DQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL-QEDSEKTGKVTSAGMYFLHFQVYRMDST 228 (414)
Q Consensus 152 k~C~~C~G~~i~--~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~-~~~s~C~G~g~~~~~~~l~v~Ip~G~~~ 228 (414)
.+|+.|.|.+.. .+++.+|++++ +++| +.|+|.|..+ ..|..|.|+|++.....++|.||+|+.+
T Consensus 158 ~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C-----------~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~ 225 (371)
T PRK14292 158 KTCPTCRGAGAVRAQARTIFGVVET-QQPC-----------PTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDE 225 (371)
T ss_pred ccCCCCCCccEEEEEEeccCceEEE-eeec-----------CCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCC
Confidence 789999985443 34455678765 7789 9999999765 5678899999999999999999999999
Q ss_pred cceEEecCCCchhhhhccCCCCCCcce-ec-cCCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 229 LNAIAIAKDPESAFFKRLEGLQPCEVS-EL-KAGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 229 g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i-~~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
|++|+|++.++. .++.. +|++ .+ ...|..|.|.|+||++++.|++ +|++|..+
T Consensus 226 G~~i~~~G~G~~-----~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~ 281 (371)
T PRK14292 226 GYRIRVAGMGNE-----GPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQI 281 (371)
T ss_pred CcEEEEecCcCC-----CCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeE
Confidence 999999999944 34444 7886 33 3568899999999999999998 99999774
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.97 E-value=7e-32 Score=265.88 Aligned_cols=188 Identities=32% Similarity=0.445 Sum_probs=144.8
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc--cc-
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE--GM- 91 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~--~~- 91 (414)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.+.++|++|++||++|+||.+|+.||+||..+.... +.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 469999999999999999999999999999999997 67889999999999999999999999999998754321 00
Q ss_pred ---cccccccc--cCccchhhhhhhccc-------------------cccceeccchhhHHHHhcCccccccCCCccccC
Q 015015 92 ---DMEIDLSN--LGTVNTMFAALFSKL-------------------GVPIKTTISANVLEEALNGTVTVRPLPIGTSVS 147 (414)
Q Consensus 92 ---~~~~d~s~--~gd~~diF~~~Fg~~-------------------G~di~~~I~~~sLeEa~~G~v~~~~lc~Gtg~~ 147 (414)
....++++ ++++.++|+.|||+. |.++.+.+.+ +|+|++.|+.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~i-sL~ea~~G~~~~i~l------- 153 (291)
T PRK14299 82 PGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPL-TLEEAYRGGEKVVEV------- 153 (291)
T ss_pred CCCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEe-cHHHHhCCCeEEEee-------
Confidence 00012222 346778888888631 2355566666 666666665421100
Q ss_pred CccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccceeccCCCCCCceEeeeeEEEEEEEccCCC
Q 015015 148 GKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDS 227 (414)
Q Consensus 148 g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~~s~C~G~g~~~~~~~l~v~Ip~G~~ 227 (414)
....++|.||+|+.
T Consensus 154 ------------------------------------------------------------------~g~~~~V~Ip~G~~ 167 (291)
T PRK14299 154 ------------------------------------------------------------------AGERLSVRIPPGVR 167 (291)
T ss_pred ------------------------------------------------------------------CCEEEEEecCCCcC
Confidence 01467899999999
Q ss_pred ccceEEecCCCchhhhhccCCCCCCcce-e-ccCCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 228 TLNAIAIAKDPESAFFKRLEGLQPCEVS-E-LKAGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 228 ~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~-i~~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+|+.|++++.|+.. +|++ . -...|..|.|.|+||++++.|++ +|++|.++
T Consensus 168 ~G~~ir~~g~G~~~----------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~ 220 (291)
T PRK14299 168 EGQVIRLAGKGRQG----------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKV 220 (291)
T ss_pred CCcEEEECCCCCCC----------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEE
Confidence 99999999999432 5665 3 33569999999999999999998 99999774
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.97 E-value=3.2e-31 Score=262.97 Aligned_cols=208 Identities=23% Similarity=0.310 Sum_probs=155.6
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccc----ccccccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFE----AIDAEGM 91 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~----~~~~~~~ 91 (414)
.|||+||||+++||.+|||+|||+||++||||+++ ++.|.++|++|++||++|+||.+|+.||.+|.. ++.....
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 69999999999999999999999999999999987 577899999999999999999999999999853 2211100
Q ss_pred cccccccccCccchhhhhhhcc-----------ccccceeccchhhHHHHhcCccccccCCCccccCCccccccccccce
Q 015015 92 DMEIDLSNLGTVNTMFAALFSK-----------LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGV 160 (414)
Q Consensus 92 ~~~~d~s~~gd~~diF~~~Fg~-----------~G~di~~~I~~~sLeEa~~G~v~~~~lc~Gtg~~g~~~k~C~~C~G~ 160 (414)
....+...+++|.++|+.||++ .|.|+.+.+.+ +|+|+++|+.+...+. .
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~i-sLee~~~G~~k~i~~~------------~------ 143 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAV-FLEETLTEHKRTISYN------------L------ 143 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEE-EHHHhcCCceEEEEEe------------c------
Confidence 0000001234677889988874 24688889999 9999999976422110 0
Q ss_pred eeeeeeccceeEEEEeeeccCcceeeecccCCCCcccceeccCCCCCCceEeeeeEEEEEEEccCCCccceEEecCCCch
Q 015015 161 TINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPES 240 (414)
Q Consensus 161 ~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~ 240 (414)
..|.|.|.+.+ .....++|.||+|+.+|..|++++.|++
T Consensus 144 ------------------------------~~~~g~G~~~~-----------~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 182 (306)
T PRK10266 144 ------------------------------PVYNAFGMIEQ-----------EIPKTLNVKIPAGVGNGQRIRLKGQGTP 182 (306)
T ss_pred ------------------------------ccccCCCeEEE-----------eeeEEEEEEECCCCcCCcEEEEecCCcC
Confidence 11122222211 1235789999999999999999999954
Q ss_pred hhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcchh
Q 015015 241 AFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSYE 288 (414)
Q Consensus 241 g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~~ 288 (414)
. ..+..+++++ .+. ..|.+|.|.|+||++++.|++ +|++|..+.
T Consensus 183 ~----~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~ 229 (306)
T PRK10266 183 G----ENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVT 229 (306)
T ss_pred C----CCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEE
Confidence 3 2355667886 332 458899999999999999998 999997754
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.4e-30 Score=253.84 Aligned_cols=229 Identities=27% Similarity=0.338 Sum_probs=183.7
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDME 94 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~~ 94 (414)
..|||+||||+++||..|||+||++||++||||.|. +++|.++|++|.+|||||+|+++|+.||.+|..+..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~-~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~------- 113 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNK-DKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHG------- 113 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCC-CcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhccc-------
Confidence 349999999999999999999999999999999998 559999999999999999999999999999876400
Q ss_pred ccccccCccchhhhhhhcc------ccccceeccchhhHHHHhcCccc--------cccCCCcccc-CCccccccccccc
Q 015015 95 IDLSNLGTVNTMFAALFSK------LGVPIKTTISANVLEEALNGTVT--------VRPLPIGTSV-SGKVEKQCAHFFG 159 (414)
Q Consensus 95 ~d~s~~gd~~diF~~~Fg~------~G~di~~~I~~~sLeEa~~G~v~--------~~~lc~Gtg~-~g~~~k~C~~C~G 159 (414)
...|++.++|..+|++ .+.++...+.+ .|++|..|... .|..|.|.+. .+.....|..|.|
T Consensus 114 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~ 189 (288)
T KOG0715|consen 114 ---EFGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSL-DFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRESCKTCSG 189 (288)
T ss_pred ---cccCCccchHHHhhcccccccccCccccccccc-CHHHHhhccccceEEEeecccccccCcCcccccccccchhhhC
Confidence 1123456777777765 23467777777 99999999832 3667888875 5677778999999
Q ss_pred eeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccceecc-CCCCCCceEeeeeEEEEEEEccCCCccceEEecCCC
Q 015015 160 VTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQE-DSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDP 238 (414)
Q Consensus 160 ~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~-~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g 238 (414)
.+........+++.. +| ..|+|.|.++.. |..|.|.+.+..++.+.+.+|+|..++.+|++++.+
T Consensus 190 ~~~~~~~~~~~f~~~---~~-----------~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~ 255 (288)
T KOG0715|consen 190 RGLVSNPKEDPFILY---TC-----------SYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHG 255 (288)
T ss_pred cccccccccCCccee---ec-----------ccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCC
Confidence 664333223333333 67 899999977655 788999999999999999999999999999999888
Q ss_pred chhhhhccCCCCCCcceeccCCCeeEEEeCCceeEecCccE
Q 015015 239 ESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTI 279 (414)
Q Consensus 239 ~~g~~~rl~g~~~~~~~~i~~gd~~f~r~gdnl~~~~~isl 279 (414)
-. .--+...++.++.|.|+|+|+++.+.|++
T Consensus 256 ~~----------~l~v~~~v~~~~~~~r~~~~i~~~~~i~~ 286 (288)
T KOG0715|consen 256 ND----------DLFVRLIVAKSPSFRREGKDILYDAIISF 286 (288)
T ss_pred cc----------eEEEEEEeccCcccccccCcccccccccc
Confidence 22 11122566889999999999999999885
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.6e-19 Score=171.82 Aligned_cols=77 Identities=53% Similarity=0.829 Sum_probs=71.8
Q ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccc
Q 015015 12 PTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDA 88 (414)
Q Consensus 12 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~ 88 (414)
.....|+|+|||++++|+.++||++||+||++||||+++++|++.++|++|+.||+||+||.+|..||.+|..++..
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l 103 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKL 103 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999776543
No 36
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7.5e-19 Score=172.00 Aligned_cols=74 Identities=49% Similarity=0.760 Sum_probs=70.3
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDA 88 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~ 88 (414)
..|||.||||+.+||..+|++|||+.|++|||||||+||.|.++|+.|.+||+||+|+..|+.||.+|..+...
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999765443
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=1.7e-18 Score=187.62 Aligned_cols=77 Identities=31% Similarity=0.493 Sum_probs=70.6
Q ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015015 12 PTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 12 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
.....+||+||||+++||..+||+|||+||++||||+++++ .|.++|+.|++||+|||||.+|+.||++|..+++..
T Consensus 569 ~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~~ 645 (1136)
T PTZ00341 569 EIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKGV 645 (1136)
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCCC
Confidence 34578999999999999999999999999999999999865 688899999999999999999999999998876543
No 38
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1.4e-18 Score=174.99 Aligned_cols=78 Identities=38% Similarity=0.672 Sum_probs=70.5
Q ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---hHHHHHHHHHhhhhccccCcccccccCccccccccc
Q 015015 12 PTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN---PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDA 88 (414)
Q Consensus 12 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~---~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~ 88 (414)
...++|||.+|||+++||.+||++|||++++.|||||+.+. ..|++.|+.|.+||||||||.+|++||.||+.+++-
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 34567999999999999999999999999999999998732 358899999999999999999999999999998874
Q ss_pred c
Q 015015 89 E 89 (414)
Q Consensus 89 ~ 89 (414)
.
T Consensus 85 ~ 85 (546)
T KOG0718|consen 85 E 85 (546)
T ss_pred c
Confidence 3
No 39
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=9.5e-18 Score=156.24 Aligned_cols=110 Identities=38% Similarity=0.538 Sum_probs=86.2
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHhhhhccccCcccccccCccccccccccc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNV--SNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEG 90 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~--~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~ 90 (414)
....|+|+||||.++|+..+||+|||+||+++|||+++ ...+|..+|+.|+.||.||+|.++|+.||..|.-. +. .
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id-d~-~ 88 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID-DE-S 88 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC-Cc-c
Confidence 45669999999999999999999999999999999994 34679999999999999999999999999998543 11 1
Q ss_pred ccccccccccCccchhhhhhhccccccceeccchhhHHHHhcCcc
Q 015015 91 MDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTV 135 (414)
Q Consensus 91 ~~~~~d~s~~gd~~diF~~~Fg~~G~di~~~I~~~sLeEa~~G~v 135 (414)
. .-+.++-++|..+|. ..+...++.|+.-|.|..
T Consensus 89 ~------d~~~~~~e~~~~iyk-----~VteedIeef~a~Y~gSE 122 (264)
T KOG0719|consen 89 G------DIDEDWLEFWRAIYK-----KVTEEDIEEFEANYQGSE 122 (264)
T ss_pred c------hhhhHHHHHHHHHHh-----hcccccHHHHHHHhcccH
Confidence 0 112345677777774 233444557777777764
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.68 E-value=1.4e-17 Score=127.51 Aligned_cols=63 Identities=56% Similarity=0.974 Sum_probs=59.9
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-HHHHHHHHHhhhhccccCcccccccC
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP-EAAELFKEVAYSYSILSDPEKRRHYD 79 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~-~a~~~f~~i~~AyevLsdp~kR~~YD 79 (414)
|||+||||+++++.++||++|+++++++|||+++++. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988665 68899999999999999999999997
No 41
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.3e-17 Score=166.35 Aligned_cols=77 Identities=47% Similarity=0.745 Sum_probs=69.8
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCcccccccc
Q 015015 11 APTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAID 87 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~ 87 (414)
.+...+.||+||||.++|++.+||++||+|||+||||+||.. .+|.++|+.|+.||+|||||..|+-||.+-+..|.
T Consensus 3 ~~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~ 80 (508)
T KOG0717|consen 3 NPFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILR 80 (508)
T ss_pred CchhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhc
Confidence 356788999999999999999999999999999999998754 57999999999999999999999999998765554
No 42
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=3.5e-16 Score=166.63 Aligned_cols=72 Identities=51% Similarity=0.899 Sum_probs=67.2
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccccccccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDA 88 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~ 88 (414)
+|||+||||+++|+.++||+|||+||++||||++++ +.+..+|+.|++||++|+||.+|+.||.+|..+.+.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~ 73 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDR 73 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccc
Confidence 699999999999999999999999999999999974 778889999999999999999999999999876543
No 43
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.8e-15 Score=144.24 Aligned_cols=252 Identities=23% Similarity=0.242 Sum_probs=137.1
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCccccccccccc-cc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEG-MD 92 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~-~~ 92 (414)
..|||+||+|+++|+..+|++|||++|+++|||+++.. ..|..+|+++.+||++|+||.+|.+||++|.+++...+ +.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~~~~~~ 81 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKGGGSFS 81 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccccCCCCC
Confidence 56999999999999999999999999999999998865 24555899999999999999999999999986555411 11
Q ss_pred ccccc----cccCccchhhhhhhccccccceeccchhhH-----HHHhcCccccccCCCccccCCccccccccccceeee
Q 015015 93 MEIDL----SNLGTVNTMFAALFSKLGVPIKTTISANVL-----EEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTIN 163 (414)
Q Consensus 93 ~~~d~----s~~gd~~diF~~~Fg~~G~di~~~I~~~sL-----eEa~~G~v~~~~lc~Gtg~~g~~~k~C~~C~G~~i~ 163 (414)
..... -......+.|..+||....--........+ ++....... ... .+.+. ......+..+. ..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~-~~~~~~~~~~~---~~ 155 (306)
T KOG0714|consen 82 SSFTSELFYFLFRKPDKDFYEFFGVSSPFSGSKKGYRDKNAAPGEEAFKSEGK-AFQ-SLYGP-KRKQYDSSGSD---RS 155 (306)
T ss_pred CCCCCCcceeccCchhhhHHHHhCCCCCCccccccCCccccccCccccccccc-ccc-ccCCC-ccccccccccc---cc
Confidence 11011 112334566777776211100000000000 000000000 000 00000 00000000000 00
Q ss_pred eeeccceeEEEEeeeccCcceeeecccCCCCcccceeccCCCCCCce--EeeeeEEEEEEEccCCCccceEEecCCCchh
Q 015015 164 DQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKV--TSAGMYFLHFQVYRMDSTLNAIAIAKDPESA 241 (414)
Q Consensus 164 ~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~~s~C~G~g--~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g 241 (414)
..+..+. .. ...| .+..-...|.-.+.+.. ......+ .......+.+.+++++..+..+..+..+
T Consensus 156 ~~~~~~~--~~-~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 222 (306)
T KOG0714|consen 156 ARQSPPV--EH-PLRV-----SLEDLYKGESKKMKISR--QSFTSNGREGSSRSRYLSISIKPGWKEGTKITFPEEG--- 222 (306)
T ss_pred ccCCCCc--cC-Ccce-----eHHHhccccceeeeccc--ccccCCcccccCccceeEEeccCCcccccceeccccc---
Confidence 0000000 00 0000 00000011111111110 0111112 3466778889999999999999999998
Q ss_pred hhhccCCCCCCcceeccC-C-CeeEEEeCCceeEe--cCccE-EEecCcch
Q 015015 242 FFKRLEGLQPCEVSELKA-G-THIFAVYGDNFFKT--ATYTI-EALCAKSY 287 (414)
Q Consensus 242 ~~~rl~g~~~~~~~~i~~-g-d~~f~r~gdnl~~~--~~isl-eal~g~s~ 287 (414)
+..++..|.++..+.. . +.++.+.+++|..+ ..+++ +++++...
T Consensus 223 --~~~~~~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~ 271 (306)
T KOG0714|consen 223 --DEEPGILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTV 271 (306)
T ss_pred --cccCCcCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcce
Confidence 6666666766663333 2 66667889999999 88886 88887654
No 44
>PHA03102 Small T antigen; Reviewed
Probab=99.60 E-value=6.3e-16 Score=138.09 Aligned_cols=84 Identities=20% Similarity=0.308 Sum_probs=69.7
Q ss_pred CCCccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccccccccccc
Q 015015 16 RDPYEVLCVSRDS--SDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAEGMDM 93 (414)
Q Consensus 16 ~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~~~~~ 93 (414)
..+|+||||+++| |.++||+|||++|+++|||++++ .++|++|++||++|+|+.+|..||.+|........
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~--- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE--- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---
Confidence 3679999999999 99999999999999999999863 36999999999999999999999999965432221
Q ss_pred cccccccCccchhhhhhhcc
Q 015015 94 EIDLSNLGTVNTMFAALFSK 113 (414)
Q Consensus 94 ~~d~s~~gd~~diF~~~Fg~ 113 (414)
.....+|+++||+
T Consensus 78 -------~~~~~~f~~~fg~ 90 (153)
T PHA03102 78 -------DVPSGYVGATFGD 90 (153)
T ss_pred -------ccHHHHhhhhcCC
Confidence 1145677777763
No 45
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.59 E-value=1.6e-15 Score=114.24 Aligned_cols=59 Identities=64% Similarity=0.930 Sum_probs=54.9
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHhhhhccccCccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVS-NPEAAELFKEVAYSYSILSDPEK 74 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~-~~~a~~~f~~i~~AyevLsdp~k 74 (414)
.|||+||||+++++.++||++|+++++.+|||++++ .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999986 57788999999999999999853
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=4.2e-15 Score=109.89 Aligned_cols=55 Identities=64% Similarity=0.988 Sum_probs=52.0
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccC
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSD 71 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsd 71 (414)
|||+||||+++++.++||++||+|++++|||++++.+.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999998557788999999999999986
No 47
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.7e-15 Score=137.80 Aligned_cols=69 Identities=57% Similarity=0.870 Sum_probs=65.5
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH-HHHHHHHHhhhhccccCcccccccCccc
Q 015015 14 IRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPE-AAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~-a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
...|||+||||+++|+..||++|||++|++||||++++++. +.++|+.|++||++|+|+.+|+.||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45699999999999999999999999999999999998885 9999999999999999999999999974
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.54 E-value=4.5e-15 Score=145.84 Aligned_cols=77 Identities=47% Similarity=0.750 Sum_probs=68.3
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh---HHHHHHHHHhhhhccccCcccccccCcccccccccc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNP---EAAELFKEVAYSYSILSDPEKRRHYDNAGFEAIDAE 89 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~---~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~~~~ 89 (414)
+..+|||+||||.++|+..||-+|||++|.+||||-.++.. .|+.+|..|..|-|||+||++|+.||. |...++.+
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~E 469 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDPE 469 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCChh
Confidence 44679999999999999999999999999999999988543 488999999999999999999999998 56666654
Q ss_pred c
Q 015015 90 G 90 (414)
Q Consensus 90 ~ 90 (414)
.
T Consensus 470 s 470 (504)
T KOG0624|consen 470 S 470 (504)
T ss_pred h
Confidence 3
No 49
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4e-15 Score=137.66 Aligned_cols=75 Identities=36% Similarity=0.678 Sum_probs=67.9
Q ss_pred CCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCcccccc
Q 015015 11 APTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEA 85 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~ 85 (414)
......|||+||||+++||+.|||+|||+|+++|||||+++..+.++.|..|+.||+.|+|+..|..|..||++.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 334567999999999999999999999999999999999855667788999999999999999999999999764
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.39 E-value=2.6e-13 Score=124.09 Aligned_cols=64 Identities=25% Similarity=0.415 Sum_probs=57.7
Q ss_pred CCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCc
Q 015015 17 DPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 17 d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
|||+||||++. ++..+|+++||++++++|||+.++.+. +.+.|..|++||++|+||.+|+.|+.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 89999999996 788999999999999999999875432 56789999999999999999999984
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.7e-13 Score=137.34 Aligned_cols=69 Identities=55% Similarity=0.825 Sum_probs=65.7
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccccCcc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRHYDNA 81 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~YD~~ 81 (414)
+.+.|||.||||+++|+..||++|||++|+.+|||++.++ .+++.+|+++.+||.+|+||.+|..||..
T Consensus 370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 4578999999999999999999999999999999999988 78999999999999999999999999985
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=5.2e-13 Score=121.48 Aligned_cols=65 Identities=26% Similarity=0.424 Sum_probs=57.3
Q ss_pred CCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH---HHHHHHHHhhhhccccCcccccccCc
Q 015015 16 RDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPE---AAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 16 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~---a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
.|||++|||++. ++..+|+++||+|++++|||++.+..+ +...+..|++||++|+||.+|+.|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 599999999997 789999999999999999999875332 33458899999999999999999975
No 53
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.34 E-value=7.9e-13 Score=121.36 Aligned_cols=66 Identities=23% Similarity=0.426 Sum_probs=58.2
Q ss_pred CCCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChHHH-----HHHHHHhhhhccccCcccccccCc
Q 015015 15 RRDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPEAA-----ELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 15 ~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~a~-----~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
..|||+||||++. ++..+|+++||+|++++|||++++.+.+. +.+..|+.||++|+||.+|+.|+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 4699999999995 68999999999999999999988655443 346899999999999999999984
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=4e-13 Score=126.87 Aligned_cols=67 Identities=45% Similarity=0.744 Sum_probs=62.4
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
..|+|+||||+++|+..||.+|||+||+++|||+++ ++++.+.|..|..||++|.|...|..||..-
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 469999999999999999999999999999999998 5666699999999999999999999999763
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1.2e-12 Score=119.78 Aligned_cols=67 Identities=25% Similarity=0.364 Sum_probs=60.1
Q ss_pred CCCCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCc
Q 015015 14 IRRDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 14 ~~~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
...|||++|||++. .+..+|+++||+|++++|||++.+.+. +.+.|..|+.||++|+||.+|+.|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 35799999999997 678999999999999999999876543 56779999999999999999999985
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.1e-12 Score=132.94 Aligned_cols=67 Identities=39% Similarity=0.642 Sum_probs=64.4
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCcccccccCccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHYDNAG 82 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G 82 (414)
.+|+|.+|||++++++++||+.||++|...|||||. .+.|.+.|+.|..||++|+|+.+|..||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 679999999999999999999999999999999998 8999999999999999999999999999753
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.15 E-value=3.1e-11 Score=102.89 Aligned_cols=55 Identities=25% Similarity=0.463 Sum_probs=48.5
Q ss_pred CCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhcccc
Q 015015 12 PTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILS 70 (414)
Q Consensus 12 ~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLs 70 (414)
.+...++|+||||+++||.+|||++||+|++++|||++. + .+.|++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG-s---~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG-S---TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHHh
Confidence 344579999999999999999999999999999999963 3 368899999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.12 E-value=4.2e-11 Score=116.94 Aligned_cols=60 Identities=42% Similarity=0.559 Sum_probs=52.8
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C-----hHHHHHHHHHhhhhccccCc
Q 015015 13 TIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVS--N-----PEAAELFKEVAYSYSILSDP 72 (414)
Q Consensus 13 ~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~--~-----~~a~~~f~~i~~AyevLsdp 72 (414)
....|+|+||||++++|.++||+|||+|+++||||++.+ . +.|.++|++|++||++|+..
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 445799999999999999999999999999999999643 1 35889999999999999853
No 59
>PHA02624 large T antigen; Provisional
Probab=99.04 E-value=1.2e-10 Score=123.34 Aligned_cols=60 Identities=22% Similarity=0.341 Sum_probs=55.8
Q ss_pred CCCCccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCccccccc
Q 015015 15 RRDPYEVLCVSRDS--SDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDPEKRRHY 78 (414)
Q Consensus 15 ~~d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp~kR~~Y 78 (414)
..++|++|||+++| +.++||+|||++|++||||++. + .++|++|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG-d---eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG-D---EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC-c---HHHHHHHHHHHHHHhcHHHhhhc
Confidence 34899999999999 9999999999999999999974 3 47999999999999999999998
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.00 E-value=1.3e-10 Score=117.57 Aligned_cols=72 Identities=38% Similarity=0.701 Sum_probs=65.5
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ChHHHHHHHHHhhhhccccCcccccccCccccccc
Q 015015 15 RRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVS-----NPEAAELFKEVAYSYSILSDPEKRRHYDNAGFEAI 86 (414)
Q Consensus 15 ~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~-----~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~~~~ 86 (414)
.-|+|||||++.+++..+||++||+|+.+|||||.++ ..+.++.+.+|+.||+.|+|...|+.|-.||....
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 4599999999999999999999999999999999875 14678899999999999999999999999997643
No 61
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=4e-10 Score=103.28 Aligned_cols=70 Identities=31% Similarity=0.583 Sum_probs=63.1
Q ss_pred CCCCCCCCCCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-hHHHHHHHHHhhhhccccCcccccc
Q 015015 8 GSSAPTIRRDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSN-PEAAELFKEVAYSYSILSDPEKRRH 77 (414)
Q Consensus 8 ~~~~~~~~~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~-~~a~~~f~~i~~AyevLsdp~kR~~ 77 (414)
.+++...+.|+|+||.|.|..+.++||+.||+|++..|||+|++| +.|...|..|..||..|-|+.-|..
T Consensus 45 rpgstyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 45 RPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cCCccccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 345566889999999999999999999999999999999999988 6788999999999999999985543
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.88 E-value=1.7e-09 Score=99.05 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=56.8
Q ss_pred CCCccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccC
Q 015015 16 RDPYEVLCVSRD--SSDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYD 79 (414)
Q Consensus 16 ~d~Y~iLgv~~~--as~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD 79 (414)
.|||++||+++. .+..+++++||+|.+++|||+....+. +.+.-..||+||.+|.||.+|+.|=
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YL 72 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAI 72 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 599999999996 899999999999999999999876542 4455789999999999999999994
No 63
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.78 E-value=5.1e-09 Score=94.59 Aligned_cols=54 Identities=30% Similarity=0.445 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHhhhhccccCcccccccCcc
Q 015015 28 SSDQEIKTAYRKLALKYHPDKNVSNP-----EAAELFKEVAYSYSILSDPEKRRHYDNA 81 (414)
Q Consensus 28 as~~eIk~ayr~la~~~HPDk~~~~~-----~a~~~f~~i~~AyevLsdp~kR~~YD~~ 81 (414)
.+..+|+++||+|++++|||+.++.. .+...|..|++||++|+||.+|+.|+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46789999999999999999965432 2667899999999999999999999864
No 64
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.75 E-value=1.4e-08 Score=109.25 Aligned_cols=71 Identities=11% Similarity=-0.003 Sum_probs=59.9
Q ss_pred EeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce-ecc-CCCeeEEEeCCceeEecCccE-EEecCcch
Q 015015 211 TSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS-ELK-AGTHIFAVYGDNFFKTATYTI-EALCAKSY 287 (414)
Q Consensus 211 ~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~-~i~-~gd~~f~r~gdnl~~~~~isl-eal~g~s~ 287 (414)
+..+...|+|.||+|+.+|++|+|+|+|+. .++. ++|++ .+. ..|.+|.|.|+|||+++.|+| +||+|+++
T Consensus 692 tvkE~ktLeVkIPpGVkdGqkIRf~GeGDe-----gpgg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtI 765 (871)
T TIGR03835 692 TTNEAITLEIQLPITSQLNISAIFKGFGHD-----FGNG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGII 765 (871)
T ss_pred eeeeeEEEEEecCCCCCCCCEEEeccccCC-----CCCC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEE
Confidence 456678999999999999999999999943 3444 48887 443 559999999999999999998 99999765
No 65
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=5.7e-08 Score=98.10 Aligned_cols=127 Identities=16% Similarity=0.111 Sum_probs=99.0
Q ss_pred CccccC--CccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce-----------eccCCCCCC
Q 015015 142 IGTSVS--GKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA-----------LQEDSEKTG 208 (414)
Q Consensus 142 ~Gtg~~--g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~-----------~~~~s~C~G 208 (414)
.|.... ......|.+|.|.+.. +|. ...+| ++|+|+|++ .+.|+.|+|
T Consensus 131 ~G~~~~i~~~~~~~C~~C~GsGak-----~gt---~~~tC-----------~tC~G~G~v~~~~~~g~~~~~~~C~~C~G 191 (371)
T COG0484 131 FGVKKEIRVTRSVTCSTCHGSGAK-----PGT---DPKTC-----------PTCNGSGQVRTVQRTGFFSFQQTCPTCNG 191 (371)
T ss_pred cCceeeEecceeeECCcCCCCCCC-----CCC---CCCcC-----------CCCCCcCeEEEEEeeeEEEEEEECCCCcc
Confidence 455443 3345589999985332 221 13467 999999953 246899999
Q ss_pred ce--------EeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCcc
Q 015015 209 KV--------TSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYT 278 (414)
Q Consensus 209 ~g--------~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~is 278 (414)
+| +|.+...+... ....|.||.+.+.+...++.|.+.....+..+||+|+. |..|+.|.+.+.+
T Consensus 192 ~G~~i~~pC~~C~G~G~v~~~------~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~d 265 (371)
T COG0484 192 TGKIIKDPCGKCKGKGRVKKK------KSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDD 265 (371)
T ss_pred ceeECCCCCCCCCCCCeEeee------eEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCc
Confidence 98 45666664332 35688999999999999999999988888889999998 8999999999999
Q ss_pred EEEecCcchhhhhhh
Q 015015 279 IEALCAKSYEDNSQK 293 (414)
Q Consensus 279 leal~g~s~~~~~~~ 293 (414)
|.+-+.+++++|+..
T Consensus 266 L~~~~~Is~~~AalG 280 (371)
T COG0484 266 LYCEVPISFTEAALG 280 (371)
T ss_pred eEeccccCHHHHhcC
Confidence 999999999998876
No 66
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2e-08 Score=96.10 Aligned_cols=73 Identities=32% Similarity=0.464 Sum_probs=63.7
Q ss_pred CCCCCCCCccccCCCC---CCCHHHHHHHHHHHHHHhCCCCC--CCChHHHHHHHHHhhhhccccCcccccccCcccc
Q 015015 11 APTIRRDPYEVLCVSR---DSSDQEIKTAYRKLALKYHPDKN--VSNPEAAELFKEVAYSYSILSDPEKRRHYDNAGF 83 (414)
Q Consensus 11 ~~~~~~d~Y~iLgv~~---~as~~eIk~ayr~la~~~HPDk~--~~~~~a~~~f~~i~~AyevLsdp~kR~~YD~~G~ 83 (414)
..|...|+|.+||++. .|++.+|.++.++...+||||+. .++......|+.|+.||+||+|+.+|.+||..-+
T Consensus 38 k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df 115 (379)
T COG5269 38 KNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF 115 (379)
T ss_pred hhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence 3466789999999997 58999999999999999999997 2345567889999999999999999999998654
No 67
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=98.37 E-value=4.4e-07 Score=70.16 Aligned_cols=62 Identities=26% Similarity=0.309 Sum_probs=43.0
Q ss_pred ccCCCcccc-CCccccccccccceeeee-eeccceeEEEEeeeccCcceeeecccCCCCccccee--ccCCCCCCce
Q 015015 138 RPLPIGTSV-SGKVEKQCAHFFGVTIND-QQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLAL--QEDSEKTGKV 210 (414)
Q Consensus 138 ~~lc~Gtg~-~g~~~k~C~~C~G~~i~~-~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~--~~~s~C~G~g 210 (414)
++.|.|+|. ++..+.+|+.|.|.+++. .+..++++++.+.+| +.|+|+|.++ .+|..|+|+|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C-----------~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTC-----------PKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE------------TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEEC-----------CCCcceeeEECCCCCCCCCCcC
Confidence 467999987 788889999999844432 222566677778899 9999999775 5577899875
No 68
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=1.2e-06 Score=90.17 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=79.0
Q ss_pred CCCCccccee---------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLAL---------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~~---------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|.+. +.|+.|.|.|.. .+...+. ......|.||.+..++...+++|.+...
T Consensus 179 ~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 252 (391)
T PRK14284 179 DRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIK------DKRSVHVHIPAGVDSGMRLKMEGYGDAG 252 (391)
T ss_pred CccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceec------ceEEEEEEECCCCCCCCEEEEeccccCC
Confidence 8899998642 579999999843 3443321 1235688999999999999999999877
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 253 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 294 (391)
T PRK14284 253 QNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALG 294 (391)
T ss_pred CCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCC
Confidence 777778999997 7899999999999999999999998764
No 69
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.22 E-value=3.1e-06 Score=87.23 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=93.3
Q ss_pred CCcccc--CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce---------eccCCCCCCc
Q 015015 141 PIGTSV--SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA---------LQEDSEKTGK 209 (414)
Q Consensus 141 c~Gtg~--~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~---------~~~~s~C~G~ 209 (414)
..|... .......|++|.|.+..... ...+| +.|+|.|.+ .+.|+.|.|.
T Consensus 161 ~~G~~~~v~~~~~~~C~~C~G~G~~~~~--------~~~~C-----------~~C~G~G~~~~~~g~~~~~~~C~~C~G~ 221 (392)
T PRK14279 161 AKGVTMPLRLTSPAPCTTCHGSGARPGT--------SPKVC-----------PTCNGSGVISRNQGAFGFSEPCTDCRGT 221 (392)
T ss_pred hCCeEEEEeeeccccCCCCccccccCCC--------CCCCC-----------CCCcceEEEEEEecceEEEEecCCCCce
Confidence 445433 23335578888885432110 01356 889998864 3579999999
Q ss_pred eEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccE
Q 015015 210 VTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTI 279 (414)
Q Consensus 210 g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isl 279 (414)
|.. .+...+.-. ....|.||.+..++...+++|.+........+||++|. +..|++|.+.+.+|
T Consensus 222 G~~i~~~C~~C~G~g~v~~~------~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL 295 (392)
T PRK14279 222 GSIIEDPCEECKGTGVTTRT------RTINVRIPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDL 295 (392)
T ss_pred eEEeCCcCCCCCCCeEEEEe------eeeEEEeCCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcE
Confidence 943 444443221 34678999999999999999999877666668999997 78999999999999
Q ss_pred EEecCcchhhhhhh
Q 015015 280 EALCAKSYEDNSQK 293 (414)
Q Consensus 280 eal~g~s~~~~~~~ 293 (414)
..-+.+++.+|+..
T Consensus 296 ~~~~~Isl~eAl~G 309 (392)
T PRK14279 296 TVTVPVSFTELALG 309 (392)
T ss_pred EEEEEccHHHHcCC
Confidence 99999999987665
No 70
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.21 E-value=3.7e-06 Score=86.13 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=80.1
Q ss_pred CCCCccccee-------------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|+|.++ +.|+.|.|.|.. .+...+.- .....|.||.+..++...+++|.
T Consensus 170 ~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~~~V~Ip~G~~~G~~i~~~g~ 243 (372)
T PRK14296 170 NNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLE------RKKIEVNIPKGIRPNQQIKLSQK 243 (372)
T ss_pred CCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEE------EEEEEEEECCCCCCCCEEEEecc
Confidence 9999999542 378899999843 34443221 13468899999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEec-CccEEEecCcchhhhhhh----hHHHHHH
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTA-TYTIEALCAKSYEDNSQK----LKDIEAQ 300 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~-~isleal~g~s~~~~~~~----i~~~E~~ 300 (414)
+...+....+||++|. +..|++|.+. +.+|..-+.+++.+|+.. |.++++.
T Consensus 244 G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~ 301 (372)
T PRK14296 244 GHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGD 301 (372)
T ss_pred ccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCC
Confidence 9877666678999987 7899999996 799999999999987654 5555543
No 71
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.21 E-value=2.8e-06 Score=87.12 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCCccccee-------------ccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.++ +.|+.|.|.|. |.+...+.- .....|.||.+..++...+++|.
T Consensus 162 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~l~V~IppG~~~G~~i~~~g~ 235 (377)
T PRK14298 162 PTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRK------TRKITVNVPAGADSGLRLKLSGE 235 (377)
T ss_pred CCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEE------EEEEEecCCCCCCCCCEEEEecc
Confidence 8899998542 46889999984 344444331 13457889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 236 G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 281 (377)
T PRK14298 236 GEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALG 281 (377)
T ss_pred cCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCC
Confidence 8876666778999997 7899999999999999999999987655
No 72
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.19 E-value=3.3e-06 Score=86.67 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=77.0
Q ss_pred CCCCcccce-------------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+ .+.|+.|.|.|.. .+...+. ......|.||.+..++...+++|.
T Consensus 160 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~~~V~Ip~G~~~G~~i~~~g~ 233 (378)
T PRK14278 160 DTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVR------ARREITVKIPAGVGDGMRIRLAAQ 233 (378)
T ss_pred CCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEe------cceEEEEEECCCCCCCcEEEEccC
Confidence 888888853 2468899999853 3343322 123568899999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 234 G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G 279 (378)
T PRK14278 234 GEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALG 279 (378)
T ss_pred cCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcC
Confidence 9876666668999998 6899999999999999999999887654
No 73
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.18 E-value=3.1e-06 Score=86.56 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=94.7
Q ss_pred CCccccCC--ccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce---------eccCCCCCCc
Q 015015 141 PIGTSVSG--KVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA---------LQEDSEKTGK 209 (414)
Q Consensus 141 c~Gtg~~g--~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~---------~~~~s~C~G~ 209 (414)
..|..... .....|++|.|.+... + ...+| +.|+|.|.+ .+.|+.|.|.
T Consensus 128 ~~G~~~~i~~~r~~~C~~C~G~G~~~-----~----~~~~C-----------~~C~G~G~~~~~~g~~~~~~~C~~C~G~ 187 (369)
T PRK14288 128 VFGCKKTIKVQYQSVCESCDGTGAKD-----K----ALETC-----------KQCNGQGQVFMRQGFMSFAQTCGACQGK 187 (369)
T ss_pred hCCeEEEEEEEeeccCCCCCCcccCC-----C----CCcCC-----------CCCCCCcEEEEEeceEEEEEecCCCCCC
Confidence 45554322 3345799998854321 1 12356 889998854 3579999999
Q ss_pred eE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccE
Q 015015 210 VT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTI 279 (414)
Q Consensus 210 g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isl 279 (414)
|. |.+...+.-. ....|.||.+..++...+++|.+.... ...+||++|. +..|+.|.+.+.+|
T Consensus 188 G~~~~~~C~~C~G~g~v~~~------~~l~V~IP~G~~~G~~i~l~g~G~~~~-~~~~GDL~v~i~v~~h~~f~R~G~DL 260 (369)
T PRK14288 188 GKIIKTPCQACKGKTYILKD------EEIDAIIPEGIDDQNRMVLKNKGNEYE-KGKRGDLYLEARVKEDEHFKREGCDL 260 (369)
T ss_pred ceEccccCccCCCcceEEEE------EEEEEecCCCCCCCCEEEEccCccCCC-CCCCCCEEEEEEEEECCCcEEeCCEE
Confidence 94 4444443222 346789999999999999999987644 4668999997 78999999999999
Q ss_pred EEecCcchhhhhhh----hHHHHH
Q 015015 280 EALCAKSYEDNSQK----LKDIEA 299 (414)
Q Consensus 280 eal~g~s~~~~~~~----i~~~E~ 299 (414)
..-+.+++.+|+.. |.++++
T Consensus 261 ~~~~~Isl~eAllG~~i~v~tLdG 284 (369)
T PRK14288 261 FIEAPVFFTTIALGHTIKVPSLKG 284 (369)
T ss_pred EEEEecCHHHHhcCCEEEeecCCC
Confidence 99999999987654 555554
No 74
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.17 E-value=3.6e-06 Score=86.00 Aligned_cols=97 Identities=12% Similarity=0.103 Sum_probs=77.6
Q ss_pred CCCCcccce---------eccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLA---------LQEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~---------~~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|.+ .+.|+.|.|.|. |.+...+. ......|.||.+..++...+++|.+...
T Consensus 167 ~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 240 (365)
T PRK14285 167 NMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLK------KKETIELKIPAGIDDNQQIKMRGKGSVN 240 (365)
T ss_pred CCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEe------ccEEEEEEECCCCCCCCEEEEeeccccC
Confidence 888888854 347899999984 34444432 1235688999999999999999999877
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 241 ~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G 282 (365)
T PRK14285 241 PDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALG 282 (365)
T ss_pred CCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCC
Confidence 666668999987 7899999999999999999999987655
No 75
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=4.9e-06 Score=85.08 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=78.2
Q ss_pred CCCCccccee-------------ccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.++ +.|+.|.|.|. |.+...+.-. ....|.||.+..++...+++|.
T Consensus 173 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~------~~l~V~Ip~G~~~G~~i~~~g~ 246 (369)
T PRK14282 173 PKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRR------VRTTVKIPAGVEDGTVLRITGG 246 (369)
T ss_pred CCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEE------EEEEEEeCCCCCCCCEEEEecc
Confidence 9999998542 36889999984 3455544322 3468899999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|..|.+.+.+|..-+.+++.+|+..
T Consensus 247 G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G 292 (369)
T PRK14282 247 GNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILG 292 (369)
T ss_pred cCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCC
Confidence 9876666678999987 7899999999999999999999997665
No 76
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=2.8e-06 Score=87.68 Aligned_cols=98 Identities=14% Similarity=0.043 Sum_probs=77.7
Q ss_pred cCCCCcccce-------------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCC
Q 015015 190 QDTNGGYGLA-------------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEG 248 (414)
Q Consensus 190 ~~~CgG~G~~-------------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g 248 (414)
|+.|+|.|.+ .+.|+.|.|.|.. .+...+... ....|.||.+..++...+++|
T Consensus 182 C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~------~~~~V~Ip~G~~~G~~i~~~g 255 (397)
T PRK14281 182 CPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGE------VTVKVTVPAGVQDGNYLTLRG 255 (397)
T ss_pred CCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecc------eEEEEecCCCCCCCCEEEEec
Confidence 3889998854 2468899999853 444443221 245789999999999999999
Q ss_pred CCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 249 LQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 249 ~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.+........+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 256 ~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G 302 (397)
T PRK14281 256 QGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLG 302 (397)
T ss_pred ccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcC
Confidence 99877666678999997 6889999999999999999999987654
No 77
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=4.7e-06 Score=85.27 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=77.2
Q ss_pred CCCCccccee-------------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+. +.|+.|.|.|.+ .+...+. ......|.||.+..++...+++|.
T Consensus 159 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~l~V~Ip~G~~~G~~i~~~G~ 232 (371)
T PRK14287 159 SHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVR------KRKKINVKVPAGIDHGQQLRVSGQ 232 (371)
T ss_pred CCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEe------eeEEEEEEECCcCCCCCEEEEccC
Confidence 9999998542 468889999843 3444432 124568889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 233 G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 278 (371)
T PRK14287 233 GEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALG 278 (371)
T ss_pred CcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCC
Confidence 8876655578999987 7899999999999999999999987665
No 78
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.13 E-value=4.9e-06 Score=84.96 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=75.6
Q ss_pred CCCCcccce-------------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|++ .+.|+.|.|.|.. .+...+.- .....|.||.+..++...+++|.
T Consensus 169 ~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~~~V~Ip~G~~~G~~i~~~g~ 242 (365)
T PRK14290 169 PTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVV------NEDISVKIPKGATDNLRLRVKGK 242 (365)
T ss_pred CCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEE------eeEEEEEECCCCCCCcEEEEccc
Confidence 999999953 2478899999843 33433322 13468899999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+.. ....+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 243 G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 286 (365)
T PRK14290 243 GQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALG 286 (365)
T ss_pred cCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCC
Confidence 863 46679999998 7899999999999999999999987765
No 79
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.12 E-value=6e-06 Score=84.55 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=77.8
Q ss_pred CCCCcccce---------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLA---------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~---------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|.+ ...|+.|.|.|.. .+...+.-. ....|.||.+..++...+++|.+...
T Consensus 166 ~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~------~~~~V~Ip~G~~~G~~i~l~g~G~~~ 239 (372)
T PRK14300 166 DACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQ------RNLSVNIPAGVENGTRIRHTGEGEAG 239 (372)
T ss_pred CCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEee------EEEEEEECCCCCCCcEEEEeccccCC
Confidence 888998854 3468999999843 444443222 23578999999999999999999877
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+....+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 240 ~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G 281 (372)
T PRK14300 240 IRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALG 281 (372)
T ss_pred CCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCC
Confidence 766678999997 7889999999999999999999998765
No 80
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.12 E-value=5.6e-06 Score=85.27 Aligned_cols=118 Identities=14% Similarity=0.092 Sum_probs=88.1
Q ss_pred ccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce---------eccCCCCCCceEe--------e
Q 015015 151 EKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA---------LQEDSEKTGKVTS--------A 213 (414)
Q Consensus 151 ~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~---------~~~~s~C~G~g~~--------~ 213 (414)
...|++|.|.+.... . ...+| +.|+|.|.+ .+.|+.|.|.|.. .
T Consensus 166 ~~~C~~C~G~G~~~~-----~---~~~~C-----------~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 166 QAPCPACSGTGAKNG-----T---TPRVC-----------PTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred cccCCCCcccccCCC-----C---CCcCC-----------CCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence 457888988544321 1 01356 888888853 3578999999953 3
Q ss_pred eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhh
Q 015015 214 GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNS 291 (414)
Q Consensus 214 ~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~ 291 (414)
+...+.- .....|.||.+..++...+++|.+........+||++|. +..|+.|.+.+.+|..-+.+++.+|+
T Consensus 227 G~g~~~~------~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl 300 (389)
T PRK14295 227 GSGRAKS------SRTMQVRIPAGVSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAA 300 (389)
T ss_pred CCceEee------eeEEEEEeCCCCCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHh
Confidence 3333221 234678999999999999999998876666678999997 79999999999999999999999877
Q ss_pred hh
Q 015015 292 QK 293 (414)
Q Consensus 292 ~~ 293 (414)
..
T Consensus 301 ~G 302 (389)
T PRK14295 301 LG 302 (389)
T ss_pred CC
Confidence 64
No 81
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.09 E-value=8.3e-06 Score=83.65 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=76.9
Q ss_pred CCCCcccce-------------eccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+ .+.|+.|.|.|. |.+...+.- .....|.||.+..++...+++|.
T Consensus 164 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~i~V~Ip~G~~~G~~i~l~G~ 237 (376)
T PRK14280 164 SHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRK------RKKINVKIPAGVDNGQQIRVSGE 237 (376)
T ss_pred CCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEE------EEEEEEEeCCCCcCCcEEEEccc
Confidence 888888853 246889999984 344444321 13457889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|+.-+.+++.+|+..
T Consensus 238 G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 283 (376)
T PRK14280 238 GEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALG 283 (376)
T ss_pred ccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCC
Confidence 9876656678999997 7899999999999999999999987655
No 82
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=6.2e-06 Score=84.28 Aligned_cols=97 Identities=16% Similarity=0.112 Sum_probs=77.9
Q ss_pred CCCCcccce---------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLA---------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~---------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|.+ .+.|+.|.|.|.. .+...+. ......|.||.+..++...+++|.+...
T Consensus 165 ~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (366)
T PRK14294 165 PQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVR------VSKTVQVKIPAGVDTGSRLRLRGEGEAG 238 (366)
T ss_pred CCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEee------cceeEEEecCCCCcCCcEEEEccCccCC
Confidence 888888854 3578999999943 4444432 1234688899999999999999999876
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|++|.+.+.+|+.-+.+++.+|+..
T Consensus 239 ~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 280 (366)
T PRK14294 239 VRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALG 280 (366)
T ss_pred CCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCC
Confidence 666778999987 7899999999999999999999887655
No 83
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.08 E-value=7.9e-06 Score=83.92 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=76.4
Q ss_pred CCCCcccce-------------eccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+ .+.|+.|.|.|. |.+...+.- .....|.||.+..++...+++|.
T Consensus 167 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~------~~~l~V~Ip~G~~~G~~i~l~G~ 240 (380)
T PRK14276 167 GKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQ------AHTVSVKIPAGVETGQQIRLQGQ 240 (380)
T ss_pred CCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEE------EEEEEEEeCCCccCCcEEEEecc
Confidence 899998854 246889999984 344444321 12457889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|++|.+.+.+|+..+.+++.+|+..
T Consensus 241 G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 286 (380)
T PRK14276 241 GEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALG 286 (380)
T ss_pred ccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCC
Confidence 8766555567999987 7999999999999999999999987655
No 84
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.07 E-value=8.1e-06 Score=83.90 Aligned_cols=98 Identities=13% Similarity=0.008 Sum_probs=76.8
Q ss_pred cCCCCcccce---------eccCCCCCCceEe-------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 190 QDTNGGYGLA---------LQEDSEKTGKVTS-------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 190 ~~~CgG~G~~---------~~~~s~C~G~g~~-------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
|+.|+|.|.+ .+.|+.|.|.|.. .+...+.- .....|.||.+..++...+++|.+...
T Consensus 176 C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~G~g~v~~------~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 249 (382)
T PRK14291 176 CPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCNGRGLVIK------KETIKVRIPPGVDNGSKLRVPGKGHAG 249 (382)
T ss_pred CCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCCCCceEEe------eeEEEEEeCCCCCCCCEEEEecCcCCC
Confidence 3888888854 3468889998842 22222211 234678999999999999999999876
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|++|.+.+.+|+.-+.+++.+|+..
T Consensus 250 ~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G 291 (382)
T PRK14291 250 RFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLG 291 (382)
T ss_pred CCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCC
Confidence 666779999997 6899999999999999999999987665
No 85
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.1e-06 Score=93.14 Aligned_cols=59 Identities=39% Similarity=0.560 Sum_probs=49.5
Q ss_pred CCCCCCCCCCccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhcccc
Q 015015 9 SSAPTIRRDPYEVLCVSRD----SSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILS 70 (414)
Q Consensus 9 ~~~~~~~~d~Y~iLgv~~~----as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLs 70 (414)
.|......+-|+||.|+-+ -..+.||++|++||.+||||||| +-.++|..+++|||.|+
T Consensus 1274 KP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1274 KPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred CCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 4455566688999999864 24488999999999999999986 45689999999999998
No 86
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.06 E-value=7.4e-06 Score=85.09 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=91.3
Q ss_pred cccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce-------------eccCCCCCCceEee---
Q 015015 150 VEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA-------------LQEDSEKTGKVTSA--- 213 (414)
Q Consensus 150 ~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~-------------~~~~s~C~G~g~~~--- 213 (414)
....|++|.|.+... + ...+| +.|+|.|.. .+.|+.|.|.|...
T Consensus 149 r~~~C~~C~G~G~~~-----~----~~~~C-----------~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~ 208 (421)
T PTZ00037 149 KDVICANCEGHGGPK-----D----AFVDC-----------KLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPES 208 (421)
T ss_pred ccccccccCCCCCCC-----C----CCccC-----------CCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceecccc
Confidence 345799998854311 1 12356 899999952 23789999998542
Q ss_pred -------eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecC
Q 015015 214 -------GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCA 284 (414)
Q Consensus 214 -------~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g 284 (414)
+...+.- .....|.||.+..+|...+++|.+.... ...+||++|. +..|++|.+.+.+|..-+.
T Consensus 209 ~~C~~C~G~g~v~~------~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~-~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~ 281 (421)
T PTZ00037 209 KKCKNCSGKGVKKT------RKILEVNIDKGVPNQHKITFHGEADEKP-NEIPGNVVFILNEKPHDTFKREGGDLFITKK 281 (421)
T ss_pred ccCCcCCCcceeee------eeEEEEeeCCCCCCCcEEEEecccCCCC-CCCCCcEEEEEEecCCCCcEEeCCeEEEEEe
Confidence 3333321 1346889999999999999999987644 4669999997 6889999999999999999
Q ss_pred cchhhhhh----hhHHHHHH
Q 015015 285 KSYEDNSQ----KLKDIEAQ 300 (414)
Q Consensus 285 ~s~~~~~~----~i~~~E~~ 300 (414)
+++.+|+. .|.++++.
T Consensus 282 Isl~eAllG~~i~I~tLdG~ 301 (421)
T PTZ00037 282 ISLYEALTGFVFYITHLDGR 301 (421)
T ss_pred CCHHHHhcCCEEEeeCCCCC
Confidence 99999765 46667664
No 87
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.05 E-value=7.9e-06 Score=83.69 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=76.2
Q ss_pred CCCCcccce---------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLA---------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~---------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|++ .+.|+.|.|.|.. .+...+.- .....|.||.+..++...+++|.+...
T Consensus 171 ~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~------~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 244 (372)
T PRK14286 171 PDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEK------RRTINIKIPPGVETGSRLKVSGEGEAG 244 (372)
T ss_pred CCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEec------ceEEEEEECCCCCCCCEEEECCccccC
Confidence 888888854 3478999999844 33333221 134678899999999999999998876
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|++|.+.+.+|..-+.+++.+|+..
T Consensus 245 ~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 286 (372)
T PRK14286 245 PNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILG 286 (372)
T ss_pred CCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCC
Confidence 655567999987 7899999999999999999999987665
No 88
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.04 E-value=8.7e-06 Score=83.77 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=75.8
Q ss_pred CCCCcccce-------------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+ .+.|+.|.|.|.. .+...+.- .....|.||.+..++...+++|.
T Consensus 176 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~l~V~Ip~G~~~G~~i~~~g~ 249 (386)
T PRK14277 176 PVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRR------RRKIKVNIPAGIDDGQMITLRGE 249 (386)
T ss_pred CCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEee------eeEEEEecCCCccCCcEEEEccc
Confidence 888988854 2468899999843 44444321 13457889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 250 G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G 295 (386)
T PRK14277 250 GEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALG 295 (386)
T ss_pred cccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCC
Confidence 8766655568999997 7899999999999999999999987643
No 89
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.01 E-value=1.2e-05 Score=82.33 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=91.6
Q ss_pred CCcccc--CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce---------eccCCCCCCc
Q 015015 141 PIGTSV--SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA---------LQEDSEKTGK 209 (414)
Q Consensus 141 c~Gtg~--~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~---------~~~~s~C~G~ 209 (414)
..|... .......|+.|.|.+..... ...+| +.|+|.|.+ .+.|+.|.|.
T Consensus 130 ~~G~~~~v~~~r~~~C~~C~G~G~~~~~--------~~~~C-----------~~C~G~G~~~~~~g~~~~~~~C~~C~G~ 190 (371)
T PRK10767 130 VRGVTKEIRIPTLVTCDTCHGSGAKPGT--------SPKTC-----------PTCHGAGQVRMQQGFFTVQQTCPTCHGR 190 (371)
T ss_pred hCCeeEEEeeeecccCCCCCCcccCCCC--------CCccC-----------CCCCCeeEEEEeeceEEEEEeCCCCCCc
Confidence 345433 23335579999884432110 01246 889998854 2469999999
Q ss_pred eEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccE
Q 015015 210 VTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTI 279 (414)
Q Consensus 210 g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isl 279 (414)
|.. .+...+.- .....|.||.+..++...+++|.+........+||++|. +..|+.|.+.+.+|
T Consensus 191 G~~~~~~C~~C~G~g~v~~------~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL 264 (371)
T PRK10767 191 GKIIKDPCKKCHGQGRVEK------EKTLSVKIPAGVDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDL 264 (371)
T ss_pred eeECCCCCCCCCCCceEee------eeeEEEecCCCCCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCE
Confidence 954 44444321 234678899999999999999998765555678999997 78999999999999
Q ss_pred EEecCcchhhhhhh
Q 015015 280 EALCAKSYEDNSQK 293 (414)
Q Consensus 280 eal~g~s~~~~~~~ 293 (414)
..-+.+++.+|+..
T Consensus 265 ~~~~~Isl~eAl~G 278 (371)
T PRK10767 265 YCEVPISFTTAALG 278 (371)
T ss_pred EEEEEeCHHHHhCC
Confidence 99999999887654
No 90
>PRK14297 chaperone protein DnaJ; Provisional
Probab=97.99 E-value=1.5e-05 Score=81.91 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=86.4
Q ss_pred ccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce-------------eccCCCCCCceEee----
Q 015015 151 EKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA-------------LQEDSEKTGKVTSA---- 213 (414)
Q Consensus 151 ~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~-------------~~~~s~C~G~g~~~---- 213 (414)
...|++|.|.+.. .|.. ..+| +.|+|.|.+ ...|+.|.|.|...
T Consensus 148 ~~~C~~C~G~G~~-----~~~~---~~~C-----------~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C 208 (380)
T PRK14297 148 NENCETCNGTGAK-----PGTS---PKTC-----------DKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPC 208 (380)
T ss_pred eccCCCccccccc-----CCCc---CccC-----------CCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCC
Confidence 4578888885443 1221 2356 888888844 24688999998542
Q ss_pred ----eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcch
Q 015015 214 ----GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSY 287 (414)
Q Consensus 214 ----~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~ 287 (414)
+...+. ......|.+|.+..++...+++|.++.......+||++|. +..|+.|.+.+.+|...+.+++
T Consensus 209 ~~C~G~g~v~------~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl 282 (380)
T PRK14297 209 NKCHGKGKVR------KNRKIKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISF 282 (380)
T ss_pred CCCCCCeEEE------eEeEEEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCH
Confidence 222211 1134577889999999999999998876656668999987 7899999999999999999999
Q ss_pred hhhhhh
Q 015015 288 EDNSQK 293 (414)
Q Consensus 288 ~~~~~~ 293 (414)
.+|+..
T Consensus 283 ~eAl~G 288 (380)
T PRK14297 283 AKAALG 288 (380)
T ss_pred HHHhCC
Confidence 987655
No 91
>PRK14301 chaperone protein DnaJ; Provisional
Probab=97.96 E-value=1.2e-05 Score=82.48 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=76.5
Q ss_pred CCCCcccce---------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCc
Q 015015 191 DTNGGYGLA---------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCE 253 (414)
Q Consensus 191 ~~CgG~G~~---------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~ 253 (414)
+.|+|.|.+ ...|+.|.|.|.. .+...+. ......|.||.+..++...+++|.+...
T Consensus 165 ~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 238 (373)
T PRK14301 165 RHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQ------QTRELKVRIPAGVDTGSRLRLRGEGEPG 238 (373)
T ss_pred CCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceec------cceEEEEEeCCCCcCCCEEEEeccccCC
Confidence 888888854 3578999999853 3333321 1234678899999999999999999876
Q ss_pred ceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 254 VSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 254 ~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
.....+||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 239 ~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G 280 (373)
T PRK14301 239 VHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALG 280 (373)
T ss_pred CCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCC
Confidence 656668999987 7899999999999999999999987665
No 92
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=9.6e-06 Score=76.34 Aligned_cols=54 Identities=22% Similarity=0.494 Sum_probs=48.8
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhc-cccC
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYS-ILSD 71 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~Aye-vLsd 71 (414)
.||.||||..+|+..++|.||..||+++|||... +....+.|.+|.+||. ||+.
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999986 4556689999999997 7764
No 93
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=97.88 E-value=2.5e-05 Score=79.44 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=76.0
Q ss_pred CCCCccccee-------------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.++ +.|+.|.|+|.. .+...+. ......|.+|.+..++...+++|.
T Consensus 164 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~l~V~Ip~G~~~G~~i~~~g~ 237 (354)
T TIGR02349 164 PTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVK------ERKTITVKIPAGVDTGQRLRVSGK 237 (354)
T ss_pred CCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEec------ccceEEEEECCCCCCCCEEEEecC
Confidence 8888888432 468899999854 3333321 123568889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..|+.|.+.+.+|..-+.+++.+|...
T Consensus 238 G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G 283 (354)
T TIGR02349 238 GNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILG 283 (354)
T ss_pred ccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCC
Confidence 8765555668999997 7889999999999999999999987665
No 94
>PRK14289 chaperone protein DnaJ; Provisional
Probab=97.75 E-value=5.7e-05 Score=77.75 Aligned_cols=97 Identities=9% Similarity=-0.041 Sum_probs=75.9
Q ss_pred CCCCccccee-------------ccCCCCCCceE--------eeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVT--------SAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~--------~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+. ..|+.|.|.|. |.+...+.-. ....|.||.+..++...+++|.
T Consensus 175 ~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~------~~~~V~Ip~G~~~G~~i~l~g~ 248 (386)
T PRK14289 175 PTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGE------EVITVKIPAGVAEGMQLSMNGK 248 (386)
T ss_pred CCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeee------EEEEEEeCCCCCCCCEEEEecc
Confidence 8888888542 36888999984 3444443222 2368889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..++.|.+.+.+|..-+.+++.+|+..
T Consensus 249 G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G 294 (386)
T PRK14289 249 GNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALG 294 (386)
T ss_pred ccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCC
Confidence 8876556668999997 6788999999999999999999998754
No 95
>PRK14283 chaperone protein DnaJ; Provisional
Probab=97.72 E-value=7e-05 Score=76.90 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=76.3
Q ss_pred CCCCcccce-------------eccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLA-------------LQEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~-------------~~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|.+ ...|+.|.|.|.. .+...+.- .....|.++.+..++...+++|.
T Consensus 167 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~------~~~l~V~IppG~~~G~~i~l~g~ 240 (378)
T PRK14283 167 PTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRE------TKTISVKIPAGVETGSRLRVSGE 240 (378)
T ss_pred CCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeecc------ceeEEEEECCCCCCCcEEEEecc
Confidence 888998864 2468899999843 44444321 12457888999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..++.|.+.+.+|+.-+.+++.+|+..
T Consensus 241 G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G 286 (378)
T PRK14283 241 GEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALG 286 (378)
T ss_pred ccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcC
Confidence 8766555668999987 7899999999999999999999987765
No 96
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.63 E-value=0.00015 Score=61.77 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=52.6
Q ss_pred ccccceeccchhhHHHHhcCccccccCCCccccCCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCC
Q 015015 114 LGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTN 193 (414)
Q Consensus 114 ~G~di~~~I~~~sLeEa~~G~v~~~~lc~Gtg~~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~C 193 (414)
.|.|+-+...+ ...+... ....|..|.|+|. ..|+.|.|.+....+.+ + +++.+.+| +.|
T Consensus 22 ~~~~~~~~~q~-~~~~~~~-~~v~C~~C~GsG~-----~~C~~C~G~G~v~~~~~-g-~~q~~~~C-----------~~C 81 (111)
T PLN03165 22 IGIPVFYETQI-DNAAKRE-NTQPCFPCSGTGA-----QVCRFCVGSGNVTVELG-G-GEKEVSKC-----------INC 81 (111)
T ss_pred cCCcEEEEEee-ehhhhhc-cCCCCCCCCCCCC-----cCCCCCcCcCeEEEEeC-C-cEEEEEEC-----------CCC
Confidence 55565555444 2322222 2446888999986 37999999766555443 2 34557788 999
Q ss_pred CcccceeccCCCCCCceEee
Q 015015 194 GGYGLALQEDSEKTGKVTSA 213 (414)
Q Consensus 194 gG~G~~~~~~s~C~G~g~~~ 213 (414)
+|.|..+ |..|.|+|++.
T Consensus 82 ~G~Gk~~--C~~C~G~G~~~ 99 (111)
T PLN03165 82 DGAGSLT--CTTCQGSGIQP 99 (111)
T ss_pred CCcceee--CCCCCCCEEEe
Confidence 9999754 99999999654
No 97
>PRK14293 chaperone protein DnaJ; Provisional
Probab=97.56 E-value=0.00011 Score=75.31 Aligned_cols=97 Identities=19% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCCCccccee-------------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
+.|+|.|++. ..|+.|.|.|.. .+...+. ......|.||.+..++...+++|.
T Consensus 164 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~~~V~IppG~~~G~~i~l~g~ 237 (374)
T PRK14293 164 STCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQ------VTKKLKINIPAGVDTGTRLRVSGE 237 (374)
T ss_pred CCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccc------cceEEEEEeCCCCCCCCEEEEccC
Confidence 8899998542 368889999854 2222211 112347889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+........+||++|. +..++.|.+.+.+|..-+.+++.+|+..
T Consensus 238 G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G 283 (374)
T PRK14293 238 GDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILG 283 (374)
T ss_pred ccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCC
Confidence 8765555568999987 7889999999999999999999987654
No 98
>PRK14292 chaperone protein DnaJ; Provisional
Probab=97.51 E-value=0.00014 Score=74.40 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=72.8
Q ss_pred CCCCccccee-------------ccCCCCCCceEe--------eeeEEEEEEEccCCCccceEEecCCCchhhhhccCCC
Q 015015 191 DTNGGYGLAL-------------QEDSEKTGKVTS--------AGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGL 249 (414)
Q Consensus 191 ~~CgG~G~~~-------------~~~s~C~G~g~~--------~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~ 249 (414)
..|+|.|.+. +.|+.|.|.|.. .+...+. ......|.||.+..++...+++|.
T Consensus 161 ~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~------~~~~~~V~Ip~G~~~G~~i~~~G~ 234 (371)
T PRK14292 161 PTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTL------KAETVKVKLPRGIDEGYRIRVAGM 234 (371)
T ss_pred CCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEe------ecceEEEEECCCCCCCcEEEEecC
Confidence 8888888542 468889998843 3333321 123467889999999999999999
Q ss_pred CCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 250 QPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 250 ~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
+...... .||++|. +..|+.|.+.+.+|..-+.+++.+|+..
T Consensus 235 G~~~~~~--~GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G 278 (371)
T PRK14292 235 GNEGPGG--NGDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALG 278 (371)
T ss_pred cCCCCCC--CCCEEEEEEEecCCccccchhceeEEeccCHHHHhCC
Confidence 8764333 3999997 7899999999999988999999987654
No 99
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00049 Score=57.58 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=44.3
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDP 72 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp 72 (414)
+.--.||||+++++.+.||.|+|++-+..|||+.. .| -.-..|++|+++|...
T Consensus 56 ~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 56 REAALILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHHHHhcc
Confidence 34456999999999999999999999999999986 44 2335799999999754
No 100
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=96.94 E-value=0.00097 Score=61.83 Aligned_cols=43 Identities=16% Similarity=-0.032 Sum_probs=38.8
Q ss_pred CCCCcccceec---cCCCCCCceEeeeeEEEEEEEccCCCccceEEe
Q 015015 191 DTNGGYGLALQ---EDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAI 234 (414)
Q Consensus 191 ~~CgG~G~~~~---~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i 234 (414)
+.|+|+|.++. +|+.|+|+|++.....+.+.+ .|+..|.+|++
T Consensus 103 ~~C~G~G~~i~~~~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~ 148 (186)
T TIGR02642 103 PRCRGTGLIQRRQRECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVL 148 (186)
T ss_pred CCCCCeeEEecCCCCCCCCCCccEEeeeEEEEEEe-eeccCCceeeH
Confidence 99999998874 689999999999999999999 88888888885
No 101
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.14 E-value=0.0021 Score=68.00 Aligned_cols=64 Identities=19% Similarity=0.175 Sum_probs=42.4
Q ss_pred ccccCCCccccCCccccccccccceeeeeeeccce-----------eEEE--EeeeccCccee-eecccCCCCcccce
Q 015015 136 TVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAG-----------IVVR--VTSTAQSKFKL-LYFEQDTNGGYGLA 199 (414)
Q Consensus 136 ~~~~lc~Gtg~~g~~~k~C~~C~G~~i~~~~~~~G-----------~v~~--~~s~C~~kfkl-i~f~~~~CgG~G~~ 199 (414)
..|+.|.|.|.-....+.|+.|.|.+-..+....| ++.. .+..|++|+++ ++-.|+.|+|+|.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 56889999887555566799998854432211111 1111 23468999998 89999999999976
No 102
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0033 Score=56.22 Aligned_cols=65 Identities=23% Similarity=0.402 Sum_probs=52.1
Q ss_pred CCCCccccCCCC--CCCHHHHHHHHHHHHHHhCCCCCCC----C-hHHHHHHHHHhhhhccccCcccccccC
Q 015015 15 RRDPYEVLCVSR--DSSDQEIKTAYRKLALKYHPDKNVS----N-PEAAELFKEVAYSYSILSDPEKRRHYD 79 (414)
Q Consensus 15 ~~d~Y~iLgv~~--~as~~eIk~ayr~la~~~HPDk~~~----~-~~a~~~f~~i~~AyevLsdp~kR~~YD 79 (414)
..+||.++|... -..+.-+..-|--..+++|||+... + ..|.+...+|++||.+|.||-.|+.|=
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yi 78 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYL 78 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 458999998655 3466666668999999999999432 1 147788999999999999999999994
No 103
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.012 Score=54.09 Aligned_cols=54 Identities=33% Similarity=0.482 Sum_probs=46.6
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--Ch-----HHHHHHHHHhhhhccc
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVS--NP-----EAAELFKEVAYSYSIL 69 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~--~~-----~a~~~f~~i~~AyevL 69 (414)
.|.|.+|++...+...+|+++||++....|||+-.. .+ .+.++++++++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999432 22 4778899999999753
No 104
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.46 E-value=0.036 Score=58.33 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCh-------HHHHHHHHHhhhhccc
Q 015015 27 DSSDQEIKTAYRKLALKYHPDKNVSNP-------EAAELFKEVAYSYSIL 69 (414)
Q Consensus 27 ~as~~eIk~ayr~la~~~HPDk~~~~~-------~a~~~f~~i~~AyevL 69 (414)
=.+.++||++||+..|..||||.+..+ .|.+.|..+.+||+..
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred ccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 458999999999999999999987653 2556677777777643
No 105
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.039 Score=54.69 Aligned_cols=124 Identities=15% Similarity=0.076 Sum_probs=67.6
Q ss_pred cccCCCcccc---CCccccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccceeccCCCCCCceEee
Q 015015 137 VRPLPIGTSV---SGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLALQEDSEKTGKVTSA 213 (414)
Q Consensus 137 ~~~lc~Gtg~---~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~~~~~s~C~G~g~~~ 213 (414)
+|+-|.|.|. ....+..|.+|.|+ ...-. |.-.. +..|.+++++ +|++|.|.|+. +|-.|.|.|...
T Consensus 200 vc~gc~g~G~~~y~~~~~m~c~sc~G~--~~~k~--gt~~~-C~~C~G~G~~---~C~tC~grG~k--~C~TC~gtgsll 269 (406)
T KOG2813|consen 200 VCHGCSGSGSNSYGIGTPMHCMSCTGV--PPPKI--GTHDL-CYMCHGRGIK---ECHTCKGRGKK--PCTTCSGTGSLL 269 (406)
T ss_pred eccCcCCCCccccccCcceecccccCC--CCCCC--Cccch-hhhccCCCcc---cCCcccCCCCc--ccccccCcccee
Confidence 5666666653 12235578888882 11111 22112 3357677654 67777777655 466788877655
Q ss_pred eeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcceeccCCCeeEEEeCCceeEecCccEEEecCcchhh
Q 015015 214 GMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFAVYGDNFFKTATYTIEALCAKSYED 289 (414)
Q Consensus 214 ~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~r~gdnl~~~~~isleal~g~s~~~ 289 (414)
....+-|.-..-... ++ .. +|..+-. |..++|.-.|.++|...+--+.-+....+.|
T Consensus 270 ~~t~~vV~wKn~~kr----kV--Se-----hr~~~~i--------Peell~~AeG~~~f~~en~~iypis~~~~~D 326 (406)
T KOG2813|consen 270 NYTRIVVYWKNEKKR----KV--SE-----HRTESEI--------PEELLFQAEGKRIFEEENDYIYPISQYQEED 326 (406)
T ss_pred eeEEEEEEeechhhh----hh--hh-----hcccccC--------cHHHHHhhhcchhhhhccceEEeccccchhh
Confidence 544443333111100 00 01 2222222 6777888899999988877776666655543
No 106
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.019 Score=52.76 Aligned_cols=64 Identities=31% Similarity=0.428 Sum_probs=50.3
Q ss_pred CCccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCChH-----HHHHHHHHhhhhccccCcccccccCc
Q 015015 17 DPYEVLCVSRDS--SDQEIKTAYRKLALKYHPDKNVSNPE-----AAELFKEVAYSYSILSDPEKRRHYDN 80 (414)
Q Consensus 17 d~Y~iLgv~~~a--s~~eIk~ayr~la~~~HPDk~~~~~~-----a~~~f~~i~~AyevLsdp~kR~~YD~ 80 (414)
|++..+|.++.+ ..+.++..|+.+++.||||+....+. +...+..++.||.+|.||-+|+.|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 445555666543 45778999999999999999865432 44679999999999999999999853
No 107
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=86.82 E-value=1.1 Score=44.89 Aligned_cols=65 Identities=11% Similarity=0.034 Sum_probs=55.7
Q ss_pred cceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 229 LNAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 229 g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
...|.+|.+..++...+++|.+........+||++|. +..|+.|.+.+.+|++-+.+++.+|+..
T Consensus 159 ~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G 225 (306)
T PRK10266 159 TLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALG 225 (306)
T ss_pred EEEEEECCCCcCCcEEEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCC
Confidence 3577889999999999999998876555668999997 6899999999999999999999887665
No 108
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=86.34 E-value=1.1 Score=34.31 Aligned_cols=51 Identities=12% Similarity=0.033 Sum_probs=28.6
Q ss_pred cccccCCCccccCCccccccccccceeeeeeeccceeEEEEeeeccCcceee-ecccCCCCccc
Q 015015 135 VTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLL-YFEQDTNGGYG 197 (414)
Q Consensus 135 v~~~~lc~Gtg~~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli-~f~~~~CgG~G 197 (414)
...++.|.|+|....... ...+.-.+++....|++++++| ..+|+.|+|.|
T Consensus 15 ~~~C~~C~G~G~~~~~~~------------~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 15 PKTCPQCNGSGQVTRRQQ------------TPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -EE-TTSSSSSEEEEEEE------------SSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CcCCcCCCCeeEEEEEEe------------CCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 456888999885322111 1112234455577777778887 78889999876
No 109
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=85.67 E-value=1.1 Score=39.27 Aligned_cols=52 Identities=25% Similarity=0.269 Sum_probs=34.9
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCc
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDP 72 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp 72 (414)
.-..||||++..+.++|.+.|.+|-...+|++... . --=..|..|.+.|..+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS-f---YLQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGS-F---YLQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC-H---HHHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999998752 1 1124566666666543
No 110
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=78.91 E-value=1.2 Score=41.45 Aligned_cols=9 Identities=44% Similarity=0.471 Sum_probs=6.8
Q ss_pred CCCCcccce
Q 015015 191 DTNGGYGLA 199 (414)
Q Consensus 191 ~~CgG~G~~ 199 (414)
+.|+|.|.+
T Consensus 119 ~~C~G~G~v 127 (186)
T TIGR02642 119 DTCAGTGRF 127 (186)
T ss_pred CCCCCccEE
Confidence 888888855
No 111
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=76.45 E-value=3 Score=44.93 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.4
Q ss_pred ccCCCCcccce--eccCCCCCCceE
Q 015015 189 EQDTNGGYGLA--LQEDSEKTGKVT 211 (414)
Q Consensus 189 ~~~~CgG~G~~--~~~~s~C~G~g~ 211 (414)
+|+.|.|.|.+ +.+|+.|.|.|.
T Consensus 55 pc~~c~gkG~V~v~~~c~~c~G~gk 79 (715)
T COG1107 55 PCPKCRGKGTVTVYDTCPECGGTGK 79 (715)
T ss_pred CCCeeccceeEEEEeecccCCCcee
Confidence 78999999954 678999999983
No 112
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=1.1 Score=45.17 Aligned_cols=139 Identities=15% Similarity=0.127 Sum_probs=69.0
Q ss_pred ccccceeccchhhHHHHhcCccccccCCCcccc--CCccccccccccceeeeeeeccceeEEEEe-eeccCcceeeeccc
Q 015015 114 LGVPIKTTISANVLEEALNGTVTVRPLPIGTSV--SGKVEKQCAHFFGVTINDQQAEAGIVVRVT-STAQSKFKLLYFEQ 190 (414)
Q Consensus 114 ~G~di~~~I~~~sLeEa~~G~v~~~~lc~Gtg~--~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~-s~C~~kfkli~f~~ 190 (414)
.|.++...++. .++..|.|......-+.|... .++..+.| -..+..++.++|.++..| ..|
T Consensus 125 ~g~~V~~~~e~-~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~----~~~~~~~~~~~g~~~~~q~~~~----------- 188 (336)
T KOG0713|consen 125 KGSDVSSDLEK-QLEHFYMGNFVEEVREKGVYKPAPGTRKCNC----RLEMFTQQEGPGRFQMLQEAVC----------- 188 (336)
T ss_pred CCceEEeehhh-chhhhhcccHHHHHhccCceeecCcccccCC----hhhheeeccCCChhhhhhhhhh-----------
Confidence 45566666776 888999888765444444332 22322222 234455566677766655 456
Q ss_pred CCCCcccceeccCCCCCCceEeeeeEEEEEEEccCCCccceEEecCCCchhhhhccCCCCCCcce--eccCCCeeEEEeC
Q 015015 191 DTNGGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTLNAIAIAKDPESAFFKRLEGLQPCEVS--ELKAGTHIFAVYG 268 (414)
Q Consensus 191 ~~CgG~G~~~~~~s~C~G~g~~~~~~~l~v~Ip~G~~~g~~I~i~~~g~~g~~~rl~g~~~~~~~--~i~~gd~~f~r~g 268 (414)
+.|-..+.. |-..-+...... -.--|.. .+.+ .++.+-. -..++|+. ....-++.|.|.+
T Consensus 189 ~~~~~~k~~------~e~~~~~~~~~~---~~~~~~~---~~~~-~~~~~h~-----~~~~gD~~f~~~~y~~~~~~~k~ 250 (336)
T KOG0713|consen 189 DECPNVKLV------LEEDPLEVEFER---GDADGPE---EIFE-LEGEPHI-----DGVPGDLFFKIVSYTHPRFERKG 250 (336)
T ss_pred ccCCcccee------ecCCceeeeeee---cccCCce---eeee-ccCCcce-----ecccCCceeeeEEecccceecCc
Confidence 777653322 222221111111 1111111 1111 1111111 11223443 3334577888899
Q ss_pred CceeEecCccE-EEecCcc
Q 015015 269 DNFFKTATYTI-EALCAKS 286 (414)
Q Consensus 269 dnl~~~~~isl-eal~g~s 286 (414)
+++++.+.+++ .++.+..
T Consensus 251 ~~~~~n~~~sl~~~~v~~~ 269 (336)
T KOG0713|consen 251 DDLYTNVTISLEAALVGFE 269 (336)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 99999888887 5566655
No 113
>COG1422 Predicted membrane protein [Function unknown]
Probab=73.38 E-value=7.3 Score=36.60 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=37.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHHH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALAR-FQEATNRYSQEKQSVD 337 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~-~~~~~~~~~~~~~~~~ 337 (414)
+.+.++++-.==..+.+.+++++.||.||+||.++ =.++.+|.+++..++-
T Consensus 60 ~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~ 111 (201)
T COG1422 60 YITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM 111 (201)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34444443333447889999999999999999875 4568888888876554
No 114
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=71.92 E-value=2.6 Score=42.21 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=37.0
Q ss_pred cccccCCCccccCCccccccccccceeeeeeeccceeEEEEeeeccC--ccee-eecccCCCCcccceeccCCCCCCce
Q 015015 135 VTVRPLPIGTSVSGKVEKQCAHFFGVTINDQQAEAGIVVRVTSTAQS--KFKL-LYFEQDTNGGYGLALQEDSEKTGKV 210 (414)
Q Consensus 135 v~~~~lc~Gtg~~g~~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~--kfkl-i~f~~~~CgG~G~~~~~~s~C~G~g 210 (414)
++.|..|+|.|. ..|+.|.|.+-.. -+-|.++.+ ++|-+ +-|. -.--|..|+|.|. .+|+.|.|.|
T Consensus 187 v~~ch~c~gRG~-----~vc~gc~g~G~~~--y~~~~~m~c-~sc~G~~~~k~gt~~~C~~C~G~G~--~~C~tC~grG 255 (406)
T KOG2813|consen 187 VTFCHACLGRGA-----MVCHGCSGSGSNS--YGIGTPMHC-MSCTGVPPPKIGTHDLCYMCHGRGI--KECHTCKGRG 255 (406)
T ss_pred hhhhhcccCCCc-----eeccCcCCCCccc--cccCcceec-ccccCCCCCCCCccchhhhccCCCc--ccCCcccCCC
Confidence 455667777773 4688998743211 122334442 34422 1121 1223678888875 4789999887
No 115
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=71.73 E-value=16 Score=29.69 Aligned_cols=68 Identities=15% Similarity=0.232 Sum_probs=56.4
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhccccc
Q 015015 286 SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 353 (414)
Q Consensus 286 s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 353 (414)
.+.+...+|-.-|..-..+-+-|.+++.-|......|.+++.-+++-+.+-++|+..-+.++-..+..
T Consensus 6 e~ed~LnkL~npEl~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 6 EHEDILNKLGNPELTESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 45567788888888888899999999999999999999999988888888899999999998666544
No 116
>PF13446 RPT: A repeated domain in UCH-protein
Probab=69.73 E-value=7.9 Score=29.03 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=24.0
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHH
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLAL 42 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~ 42 (414)
+-|++|||+++.+.+.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999877
No 117
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=69.12 E-value=3.6 Score=41.38 Aligned_cols=54 Identities=39% Similarity=0.566 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHhhhhccccCcccccccCcc
Q 015015 28 SSDQEIKTAYRKLALKYHPDKNVS----NPEAAELFKEVAYSYSILSDPEKRRHYDNA 81 (414)
Q Consensus 28 as~~eIk~ayr~la~~~HPDk~~~----~~~a~~~f~~i~~AyevLsdp~kR~~YD~~ 81 (414)
++..+|+.+|+..++..||++-.. ...-.+.|+.|..||+||++..+|...|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 677899999999999999998731 123456799999999999997776676654
No 118
>KOG2703 consensus C4-type Zn-finger protein [General function prediction only]
Probab=68.74 E-value=12 Score=38.59 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=41.7
Q ss_pred EEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015015 280 EALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQ 334 (414)
Q Consensus 280 eal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~ 334 (414)
+.-+-++..-..-.|++||+=|.+-..+|.+.|..=+..-.+--++...|-+...
T Consensus 120 EldlEIP~~Sq~GslTTVEGiL~r~~d~LsqdQekRr~~~pa~a~~Id~fi~kl~ 174 (460)
T KOG2703|consen 120 ELDLEIPAKSQKGSLTTVEGILERVIDGLSQDQEKRRITDPATAKQIDDFIVKLK 174 (460)
T ss_pred cceeeccccccCCceeehHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHH
Confidence 4444444444445699999999999999999999888888877777777766643
No 119
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=67.43 E-value=4 Score=34.88 Aligned_cols=10 Identities=10% Similarity=-0.084 Sum_probs=7.1
Q ss_pred ccCCCCCCce
Q 015015 201 QEDSEKTGKV 210 (414)
Q Consensus 201 ~~~s~C~G~g 210 (414)
+.|+.|.|.|
T Consensus 76 ~~C~~C~G~G 85 (111)
T PLN03165 76 SKCINCDGAG 85 (111)
T ss_pred EECCCCCCcc
Confidence 3567788877
No 120
>PRK14299 chaperone protein DnaJ; Provisional
Probab=67.24 E-value=8.9 Score=38.03 Aligned_cols=58 Identities=12% Similarity=0.062 Sum_probs=48.1
Q ss_pred ceEEecCCCchhhhhccCCCCCCcceeccCCCeeEE--EeCCceeEecCccEEEecCcchhhhhhh
Q 015015 230 NAIAIAKDPESAFFKRLEGLQPCEVSELKAGTHIFA--VYGDNFFKTATYTIEALCAKSYEDNSQK 293 (414)
Q Consensus 230 ~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~gd~~f~--r~gdnl~~~~~isleal~g~s~~~~~~~ 293 (414)
..|.||.+..++...+++|.+ +. .||++|. +..|+.|.+.+.+|.+.+.+++.+|+..
T Consensus 158 ~~V~Ip~G~~~G~~ir~~g~G--~~----~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G 217 (291)
T PRK14299 158 LSVRIPPGVREGQVIRLAGKG--RQ----GGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVG 217 (291)
T ss_pred EEEecCCCcCCCcEEEECCCC--CC----CCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCC
Confidence 567888888888888888774 22 2899997 7899999999999999999999988764
No 121
>PRK14139 heat shock protein GrpE; Provisional
Probab=64.77 E-value=32 Score=32.07 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
+...+..++.+|...++++.+++..|.-+++.|++...|..+|.+.+.
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~ 77 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH 77 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888899999999999999999999999999999999987654
No 122
>PHA00489 scaffolding protein
Probab=64.69 E-value=28 Score=28.54 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=55.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcc
Q 015015 285 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 285 ~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 350 (414)
.++.+..++|-+-|..-..+-+-|.+++.-|......|.+++.-+.+.+.+-++|+..-+.++..+
T Consensus 6 eehe~iLnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFrql 71 (101)
T PHA00489 6 EEHEAILNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFRQL 71 (101)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHc
Confidence 345667788888899888899999999999999999999988877777777788998888887544
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=64.54 E-value=29 Score=30.01 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015015 304 KRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 304 ~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
...++..++.|+.+...+|..+..=|++..++++||
T Consensus 66 ~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL 101 (120)
T PF12325_consen 66 LKKEVEELEQELEELQQRYQTLLELLGEKSEEVEEL 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 334444445556666666666666666666666555
No 124
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=63.76 E-value=29 Score=32.82 Aligned_cols=50 Identities=26% Similarity=0.421 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 343 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 343 (414)
|..+..++...=.+|.....+-++|+..|..++++-.+-.-+|++||...
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444455555555666666667788888888888888888899999764
No 125
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B ....
Probab=62.74 E-value=12 Score=29.62 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=18.3
Q ss_pred EEEEEEEccCCCccceEEecCCC
Q 015015 216 YFLHFQVYRMDSTLNAIAIAKDP 238 (414)
Q Consensus 216 ~~l~v~Ip~G~~~g~~I~i~~~g 238 (414)
..+.|.||+|...+..+++++.|
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G 49 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKG 49 (81)
T ss_dssp -EEEEEETST-STT-EEEETTES
T ss_pred CEEEEeccCccCCCcEEeecCCC
Confidence 45678899999999999999999
No 126
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=62.08 E-value=50 Score=29.52 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=56.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhc
Q 015015 285 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 285 ~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
+.|.......+.+|.++..-.+.+..++.|+......++.....+.+....+..+-++|++--..
T Consensus 20 ~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 20 FDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667788899999999999999999999999999999999999999999998888887554433
No 127
>PRK14154 heat shock protein GrpE; Provisional
Probab=61.87 E-value=36 Score=32.33 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
.+..++.+|...++++..++..|.-+++.|++...|..+|.+.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667778888888999999999999999999998888887654
No 128
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=59.89 E-value=14 Score=31.59 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCChHH----HHHHHHHhhhhccccCcc
Q 015015 26 RDSSDQEIKTAYRKLALKYHPDKNVSNPEA----AELFKEVAYSYSILSDPE 73 (414)
Q Consensus 26 ~~as~~eIk~ayr~la~~~HPDk~~~~~~a----~~~f~~i~~AyevLsdp~ 73 (414)
+..+..+++.|.|..-++.|||.....|.+ .+-++.|+.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 456778999999999999999987666642 344777777777777654
No 129
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=59.56 E-value=10 Score=38.57 Aligned_cols=36 Identities=14% Similarity=0.067 Sum_probs=25.8
Q ss_pred eccCCCeeEE--EeCCceeEecCccE-EEecCcchhhhhh
Q 015015 256 ELKAGTHIFA--VYGDNFFKTATYTI-EALCAKSYEDNSQ 292 (414)
Q Consensus 256 ~i~~gd~~f~--r~gdnl~~~~~isl-eal~g~s~~~~~~ 292 (414)
...+||.+|. ...|..|.+.+-+| ..+ -+++++|.-
T Consensus 229 g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~-~i~l~eal~ 267 (337)
T KOG0712|consen 229 GTKPGDVVLLIDQKEHPGFDRRGSDLYRKL-TISLVEALC 267 (337)
T ss_pred CCcCccEEEEecccccccceecccccceee-ecchhhccc
Confidence 5558999988 45689999998887 444 666665543
No 130
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=59.46 E-value=52 Score=29.55 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 344 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 344 (414)
.|..+..+|.--..--.+=+.||.+|+..|.+....=.+....+-+|+.+=+
T Consensus 92 kID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 92 KIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666777899999999999988877777777777776543
No 131
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=59.39 E-value=11 Score=35.22 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHhhhhccccCc
Q 015015 25 SRDSSDQEIKTAYRKLALKYHPDKNVSNPEAAELFKEVAYSYSILSDP 72 (414)
Q Consensus 25 ~~~as~~eIk~ayr~la~~~HPDk~~~~~~a~~~f~~i~~AyevLsdp 72 (414)
+++|+.+||.+|+.++..+|-- |+ +.-..|-.||+.+.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~g-----d~---~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAG-----DE---KSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-----CH---HHHHHHHHHHHHHHHH
Confidence 5789999999999999999832 33 4556788899755444
No 132
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=58.46 E-value=1.1e+02 Score=27.80 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 015015 292 QKLKDIEAQILRKRKELREF 311 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f 311 (414)
-.|++||+=|.+.+..|...
T Consensus 93 g~itTVEGlL~~i~~~L~~~ 112 (160)
T smart00709 93 GFITTVEGLLSRVREVLSQA 112 (160)
T ss_pred cEEEehHHHHHHHHHHHHhh
Confidence 44889999999999999876
No 133
>PRK14140 heat shock protein GrpE; Provisional
Probab=57.72 E-value=50 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.388 Sum_probs=41.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
+...|.+++.+|...++++..++.-|.-+++-|++.-.|..+|.+.+.
T Consensus 35 ~~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 35 EAELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE 82 (191)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688888899999999999999999999999999999988876543
No 134
>PRK14158 heat shock protein GrpE; Provisional
Probab=57.67 E-value=49 Score=31.07 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=41.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
....+..+|.+|...+.|+.+++..|.-+++.|++.-.|..+|.+.+.
T Consensus 38 ~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 38 AADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445688899999999999999999999999999999999998876654
No 135
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=57.65 E-value=1.1e+02 Score=28.73 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREF 311 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f 311 (414)
|.+||+=|.+....|...
T Consensus 95 iTTVEGlL~~~~~~L~~~ 112 (192)
T TIGR00310 95 ITNLEGVLRRVEEELETA 112 (192)
T ss_pred EEeeHhHHHHHHHHHHhh
Confidence 788888888888888764
No 136
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.74 E-value=36 Score=24.27 Aligned_cols=37 Identities=16% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015015 310 EFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 310 ~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
++|.+|...++.|+.....|.....+...|.++-..+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988888888877765443
No 137
>PRK14143 heat shock protein GrpE; Provisional
Probab=56.49 E-value=51 Score=31.95 Aligned_cols=46 Identities=24% Similarity=0.454 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
..+..++.+|...+.++.+++..|+-+++.|++.-.|..+|.+.+.
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999999999999999988876543
No 138
>PRK14162 heat shock protein GrpE; Provisional
Probab=55.26 E-value=58 Score=30.55 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=40.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
...+..++.+|...+.++.+++..|.-+++.|++.-.|+.+|.+.+.
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~ 84 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLI 84 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577788889999999999999999999999999999999876543
No 139
>PRK14148 heat shock protein GrpE; Provisional
Probab=54.09 E-value=63 Score=30.37 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
.+..++.+|...++++.+++..|.-+++.|++...|..+|.+.+.
T Consensus 41 e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~ 85 (195)
T PRK14148 41 QLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR 85 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788899999999999999999999999999999998876543
No 140
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=53.96 E-value=75 Score=30.88 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=55.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhccc
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 351 (414)
|--..++.+-.|+++.+-+|++--.-+++.++..+|++.-..+.+..++||.+++.++--+.|
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVt 75 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVT 75 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccc
Confidence 344558889999999999999999999999999999999999999999999999988765554
No 141
>PRK14161 heat shock protein GrpE; Provisional
Probab=53.79 E-value=66 Score=29.73 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
+...+.+|...++++.+++..|.-+++.|++...|..+|.+.+
T Consensus 21 ~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 21 VETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888889999999999999999999988887654
No 142
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=52.72 E-value=42 Score=34.50 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=44.2
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcccc
Q 015015 285 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTV 352 (414)
Q Consensus 285 ~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 352 (414)
..++...++|..-|..|-+ +|...-.||+.++.++.++..+|++-.+.|.++..+=.+|-.++-.
T Consensus 248 ~~i~~~lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~ 312 (359)
T PF10498_consen 248 QDISKTLEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQ 312 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444556666666655543 6666777888888888888888888877777776665565555533
No 143
>PRK14155 heat shock protein GrpE; Provisional
Probab=51.68 E-value=54 Score=31.10 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
.+.+++.+|...++|+..++..|.-+++.|++...|..+|.+.+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778888899999999999999999999999999887654
No 144
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=51.65 E-value=5.7 Score=23.75 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.6
Q ss_pred ccceeeeccC
Q 015015 399 KKWFNLNLKG 408 (414)
Q Consensus 399 ~~~~~~~~~~ 408 (414)
.|||||.-|.
T Consensus 10 skwfnidnki 19 (24)
T PF08053_consen 10 SKWFNIDNKI 19 (24)
T ss_pred eeeEeccCee
Confidence 5899997654
No 145
>PRK14160 heat shock protein GrpE; Provisional
Probab=51.20 E-value=64 Score=30.69 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
....+..++.++...++++..++..|+-+++.|+..-.|..++.+.+
T Consensus 59 l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 59 LKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888889999999999999999999999999999887653
No 146
>PRK14145 heat shock protein GrpE; Provisional
Probab=50.18 E-value=78 Score=29.79 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=40.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
....+..++.+|...++++..++.-|+-+++.|++.-.|..+|.+.+.
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~ 90 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMV 90 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788889999999999999999999999999999999876543
No 147
>PRK14147 heat shock protein GrpE; Provisional
Probab=50.06 E-value=74 Score=29.24 Aligned_cols=43 Identities=12% Similarity=0.222 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
...++.+|...++|+..++..|.-+++.|++.-.|..+|.+.+
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~ 62 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQA 62 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888899999999999999999999999998887654
No 148
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=49.15 E-value=55 Score=24.19 Aligned_cols=29 Identities=31% Similarity=0.425 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 015015 305 RKELREFEIEYRKALARFQEATNRYSQEK 333 (414)
Q Consensus 305 k~e~~~f~~e~~~~~~~~~~~~~~~~~~~ 333 (414)
.-||++|=.-|-.++.+|++...|.-+|.
T Consensus 8 dpELDqFMeaYc~~L~kykeeL~~p~~EA 36 (52)
T PF03791_consen 8 DPELDQFMEAYCDMLVKYKEELQRPFQEA 36 (52)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999888776654
No 149
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=48.92 E-value=65 Score=24.08 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATN 327 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~ 327 (414)
|.++..++..+|+++.+++.-.+.++.-|+-+++
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~ 49 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEVVSN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444555555555555555555444
No 150
>PRK14159 heat shock protein GrpE; Provisional
Probab=48.10 E-value=50 Score=30.49 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=36.4
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 292 QKLKDIEA-QILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 292 ~~i~~~E~-~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
++++.+|. +|...++++.+++..|.-+++.|++...|..+|.+.+.
T Consensus 22 ~~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~ 68 (176)
T PRK14159 22 ENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAM 68 (176)
T ss_pred hhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665 45677888999999999999999999999988876543
No 151
>PRK09806 tryptophanase leader peptide; Provisional
Probab=47.62 E-value=7.2 Score=23.77 Aligned_cols=10 Identities=50% Similarity=0.966 Sum_probs=7.6
Q ss_pred ccceeeeccC
Q 015015 399 KKWFNLNLKG 408 (414)
Q Consensus 399 ~~~~~~~~~~ 408 (414)
.|||||.-|.
T Consensus 10 skwfnidnki 19 (26)
T PRK09806 10 SKWFNIDNKI 19 (26)
T ss_pred eeEEeccCee
Confidence 5899997654
No 152
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=47.22 E-value=83 Score=29.93 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhh
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIH 347 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 347 (414)
.+..++..+.....+++..+.+|..+...+.....+|.+++..+-+.|-.=|+-.
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~R 205 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEER 205 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999999999987776665544433
No 153
>PRK14151 heat shock protein GrpE; Provisional
Probab=46.27 E-value=92 Score=28.73 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
...+..++.+|...++|+..++..|.-+.+.|++.-.|..+|.+.+.
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~ 65 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAH 65 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888889999999999999999999998888876543
No 154
>PRK14141 heat shock protein GrpE; Provisional
Probab=45.60 E-value=83 Score=29.89 Aligned_cols=43 Identities=9% Similarity=0.072 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 295 KDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 295 ~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
..+|.+|...++|+.+++..|.-+++.|++.-.|..+|.+.+.
T Consensus 34 ~~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~ 76 (209)
T PRK14141 34 DPEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADAR 76 (209)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999999999999999888876543
No 155
>PRK14157 heat shock protein GrpE; Provisional
Probab=45.16 E-value=68 Score=30.89 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 296 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 296 ~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
.+|.+|...++|+..++..|+-+++.|++.-.|..+|.+.+
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778888888888888888888888888888887654
No 156
>PRK14146 heat shock protein GrpE; Provisional
Probab=44.50 E-value=94 Score=29.65 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
.+..++.+|...+.++..++..|+-+++-|++...|..++.+.+
T Consensus 55 ~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~ 98 (215)
T PRK14146 55 TETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSI 98 (215)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667788888999999999999999999999999998887654
No 157
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.60 E-value=16 Score=36.30 Aligned_cols=99 Identities=23% Similarity=0.196 Sum_probs=51.8
Q ss_pred cccccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCCcccce---------eccCCCCCCceEeeeeEEEEE
Q 015015 150 VEKQCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGYGLA---------LQEDSEKTGKVTSAGMYFLHF 220 (414)
Q Consensus 150 ~~k~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~G~~---------~~~~s~C~G~g~~~~~~~l~v 220 (414)
....|.+|.|.+. .+|.-. ..| ..|.|.|+. +..|+.|.+.+.+-... .
T Consensus 163 ~~~~~~t~~~~~~-----~~~~~~---~~~-----------~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~~~~~---c 220 (288)
T KOG0715|consen 163 VLSDCETCFGSGA-----EEGAKR---ESC-----------KTCSGRGLVSNPKEDPFILYTCSYCLGRGLVLRDN---C 220 (288)
T ss_pred eecccccccCcCc-----cccccc---ccc-----------hhhhCcccccccccCCcceeecccccccceeccch---H
Confidence 3558999998652 223333 356 777888832 33588899988654433 1
Q ss_pred EEccCC-----CccceEEecCCCchhhhhccCCCCCCcceeccCC-CeeEE---EeCCceeEecCccEE
Q 015015 221 QVYRMD-----STLNAIAIAKDPESAFFKRLEGLQPCEVSELKAG-THIFA---VYGDNFFKTATYTIE 280 (414)
Q Consensus 221 ~Ip~G~-----~~g~~I~i~~~g~~g~~~rl~g~~~~~~~~i~~g-d~~f~---r~gdnl~~~~~isle 280 (414)
..-.|. .....|.+|++..++...+.+ .++ +-+|. |..+..|.+.+-+|.
T Consensus 221 ~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~----------~~~~~~l~v~~~v~~~~~~~r~~~~i~ 279 (288)
T KOG0715|consen 221 QACSGAGQVRRAKDIMIVLPAGVRSADTLRFA----------GHGNDDLFVRLIVAKSPSFRREGKDIL 279 (288)
T ss_pred HHhhcchhhhhheeEEeecCcccccccEEEEe----------cCCcceEEEEEEeccCcccccccCccc
Confidence 111111 122333444444333321111 122 23333 788888888888763
No 158
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=43.43 E-value=63 Score=25.67 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 015015 16 RDPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNV 50 (414)
Q Consensus 16 ~d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~ 50 (414)
+|.-+++|+++-||..||+.|-++..+++.--..|
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 45567889999999999999999999987544444
No 159
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=43.31 E-value=91 Score=25.25 Aligned_cols=35 Identities=20% Similarity=0.480 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 015015 300 QILRKRKELREFEIEYRKALARFQEATNRYSQEKQ 334 (414)
Q Consensus 300 ~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~ 334 (414)
.-...|-...++..||..|+..|..+..+|.+.+.
T Consensus 65 ~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 65 NDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456778889999999999999999988877653
No 160
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.82 E-value=1.3e+02 Score=31.72 Aligned_cols=71 Identities=13% Similarity=0.277 Sum_probs=45.3
Q ss_pred cCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhhhhHHHHHHHHHhHHhhhhc
Q 015015 283 CAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKA-------------LARFQEATNRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 283 ~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
+|.+..+....+..++.++...+++|.+++...... ++.+..+...+.+..+.+.+|..+..++..+
T Consensus 325 vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355545555666777777777777777776664332 3456666666777777777777777766666
Q ss_pred cccc
Q 015015 350 FTVT 353 (414)
Q Consensus 350 ~~~~ 353 (414)
+...
T Consensus 405 l~~~ 408 (451)
T PF03961_consen 405 LERS 408 (451)
T ss_pred HHhh
Confidence 6543
No 161
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=41.79 E-value=1.2e+02 Score=27.60 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 015015 292 QKLKDIEAQILRKRKELREFEI 313 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~ 313 (414)
-.|++||+-|.+.+..|...+.
T Consensus 95 g~iTTVEGlL~~i~~~L~~~~~ 116 (161)
T PF03367_consen 95 GFITTVEGLLMRIIDNLERLQP 116 (161)
T ss_dssp SEEEEHHHHHHHHHHHHHTTHH
T ss_pred ceEEehHHHHHHHHHHHHhhhh
Confidence 3489999999999999999886
No 162
>PRK14156 heat shock protein GrpE; Provisional
Probab=41.12 E-value=1.2e+02 Score=28.17 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 295 KDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 295 ~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
...+.+|...++++.+++..|.-+++.|++...|..+|.+.+
T Consensus 30 ~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~ 71 (177)
T PRK14156 30 TPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL 71 (177)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888999999999999999999999999998887653
No 163
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=40.08 E-value=1.5e+02 Score=25.63 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=39.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
.....+...+.++...+.+|..-...+++|..+|+.-+.++..-.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~ 62 (132)
T PF07926_consen 14 RLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQ 62 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3556678888899999999999999999999999987766666544333
No 164
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.75 E-value=1.1e+02 Score=29.33 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhcc
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 350 (414)
.....+++.+.++|+.+-++++..|..+.+++......-..+.|-||.+=+...++.
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666667777776644444443
No 165
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=39.58 E-value=1.3e+02 Score=29.31 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=45.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 343 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 343 (414)
..|..++.++.....++.+-+.+|..++..+.....+|.+++..+=+.+-.=
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~l 219 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEF 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 5588899999999999999999999999999999999999988776655443
No 166
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=39.54 E-value=75 Score=29.96 Aligned_cols=63 Identities=11% Similarity=0.273 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHhHHhhhhcccc
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN-RYSQEKQSVDELLKQRDAIHSSFTV 352 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~ 352 (414)
++.++.+=+..|..-++-|..-+.||..|.......-. ...++...+.+.|+.|..+|+.|..
T Consensus 73 a~~nv~~R~k~l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~ 136 (204)
T PF10368_consen 73 ALKNVDEREKELKKEKEAIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYK 136 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555666666677766666655443 3567778889999999999988743
No 167
>PRK14144 heat shock protein GrpE; Provisional
Probab=39.40 E-value=1.4e+02 Score=28.08 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
+..++..|...+.|+..++..|.-+++.|++.-.|..+|.+.+
T Consensus 47 ~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~ 89 (199)
T PRK14144 47 YTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANA 89 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888888999999999999988888887654
No 168
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.27 E-value=1.8e+02 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYR 316 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~ 316 (414)
.+.+.+...|.-|...++|++.+..|+.
T Consensus 22 ~e~~~~e~ee~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 22 QEVESLENEEKCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544
No 169
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.21 E-value=2.3e+02 Score=25.48 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=33.4
Q ss_pred CCCeeEEEeCCceeEecCcc-EEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 259 AGTHIFAVYGDNFFKTATYT-IEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEA 325 (414)
Q Consensus 259 ~gd~~f~r~gdnl~~~~~is-leal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~ 325 (414)
.|.+....+|=-.++-+.=+ ++.+.. +.+..++.+|...++|+..++.++..+.......
T Consensus 45 ~g~i~~K~~GKqkiY~~~Q~~~~~~s~-------eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 45 EGKIVEKEYGKQKIYFANQDELEVPSP-------EELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred CCCeeeeeecceEEEeeCccccCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667776655555544 233333 3355555556666666666666655555555443
No 170
>PRK10884 SH3 domain-containing protein; Provisional
Probab=38.91 E-value=3.4e+02 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=20.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKAL 319 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~ 319 (414)
+...|..+|.++...+.+|++...++.+-.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 456677777777777777777766655433
No 171
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.25 E-value=1.2e+02 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRK 317 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~ 317 (414)
|.++|.++.++...++..+.|-.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~ 25 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEE 25 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444444444444444333
No 172
>PRK14153 heat shock protein GrpE; Provisional
Probab=38.16 E-value=1.2e+02 Score=28.45 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
+...+.+|...+.++.+++..|.-+++.|++.-.|..+|.+.+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~ 78 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENR 78 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667788888999999999999999999999999888876543
No 173
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.67 E-value=1.4e+02 Score=27.00 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015015 300 QILRKRKELREFEIEYRKALARFQEATNR 328 (414)
Q Consensus 300 ~~~~~k~e~~~f~~e~~~~~~~~~~~~~~ 328 (414)
++...|++|..++.+|...+.-|+.+++.
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d 101 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRD 101 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788899999999999999999988874
No 174
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=37.20 E-value=35 Score=30.46 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHhHHhhhhcccc
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQ---------SVDELLKQRDAIHSSFTV 352 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~r~~~~~~~~~ 352 (414)
+..++.+|....+++.+++.+|..+.+.|++...|+.++.+ -+.+||.-.+.+...+..
T Consensus 13 ~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 13 IEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555556666666666666666666555555543 244566666555544443
No 175
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=37.00 E-value=1.5e+02 Score=27.88 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=8.2
Q ss_pred HHHHHHHHhHHhhhhccc
Q 015015 334 QSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 334 ~~~~~~~~~r~~~~~~~~ 351 (414)
+....|-.+|+++|..|.
T Consensus 114 qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 114 QRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444555554443
No 176
>PRK14163 heat shock protein GrpE; Provisional
Probab=36.56 E-value=1.6e+02 Score=28.08 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
+..++.+|...++++..++..|.-+++.|++.-.|..+|.+.+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 84 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTV 84 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888889999999999888888887654
No 177
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.99 E-value=1.8e+02 Score=29.19 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=48.1
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 015015 285 KSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 344 (414)
Q Consensus 285 ~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 344 (414)
..+...-..|...+.+|..+|.++.+++.|-.+...+.++...+-.+...+|.++=+.++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677899999999999999999999999888888888877777777777665555
No 178
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=35.39 E-value=1.6e+02 Score=28.33 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 015015 305 RKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 344 (414)
Q Consensus 305 k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 344 (414)
++||..+|.||.++..+. .++..|...+.++++.+.
T Consensus 155 ~~eleele~e~ee~~erl----k~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 155 LKELEELEAEYEEVQERL----KRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhch
Confidence 334444444444443332 234445555666666665
No 179
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=34.74 E-value=97 Score=35.79 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=14.0
Q ss_pred ceeEEEEeeeccCcceeeecccCC
Q 015015 169 AGIVVRVTSTAQSKFKLLYFEQDT 192 (414)
Q Consensus 169 ~G~v~~~~s~C~~kfkli~f~~~~ 192 (414)
.|+|++ ++....+-+...|.|..
T Consensus 233 ~GiV~r-~S~v~P~l~~a~f~C~~ 255 (915)
T PTZ00111 233 SGTVVR-QTWIVPEITMACFRCRG 255 (915)
T ss_pred EEEEEE-ccCcchhhEEEEEECCC
Confidence 366666 33444555667777775
No 180
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=33.87 E-value=2.6e+02 Score=23.16 Aligned_cols=32 Identities=16% Similarity=0.269 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEA 325 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~ 325 (414)
+.-++.++...++.+.+++.++.++..+...+
T Consensus 79 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~ 110 (120)
T PF02996_consen 79 IEFLKKRIKELEEQLEKLEKELAELQAQIEQL 110 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444444433
No 181
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=33.82 E-value=2.8e+02 Score=23.17 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEAT 326 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~ 326 (414)
+..++..+...++++.+++.+..+...++.++.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544444444433
No 182
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=32.85 E-value=1.9e+02 Score=25.55 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=42.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 343 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 343 (414)
...|+.+|.++..++..+..+|+ .+-.+++..|++....+.++.+.+..+|..=
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~~---~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~y 58 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEAN---DEIARIKEWYEAEIAPLQNRIEYLEGLLQAY 58 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888888888774 4555677788888888888888888888764
No 183
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.67 E-value=19 Score=41.62 Aligned_cols=32 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred cCCCCcccce----------eccCCCCCCceEeeeeEEEEEE
Q 015015 190 QDTNGGYGLA----------LQEDSEKTGKVTSAGMYFLHFQ 221 (414)
Q Consensus 190 ~~~CgG~G~~----------~~~~s~C~G~g~~~~~~~l~v~ 221 (414)
|+.|.|.|++ ..+|+.|+|+....+.-.+.+.
T Consensus 739 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~ 780 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYK 780 (924)
T ss_pred CCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeC
No 184
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.50 E-value=1.4e+02 Score=34.57 Aligned_cols=57 Identities=23% Similarity=0.433 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhc
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
.|.++|.++..+=+++..++..-.+.+.+-.+.-..+...+++.++|+.+|.+++-+
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777777777777777777777777777777777777777766643
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.11 E-value=2.4e+02 Score=27.83 Aligned_cols=58 Identities=12% Similarity=0.257 Sum_probs=32.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHhHHhhhhc
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEAT---NRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
.+.+.++.+|...=.++.....+-.+..+++++.- .+|+++-.++++-|.+|++++..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444555555555433 35556666666778888887765
No 186
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=31.98 E-value=1.8e+02 Score=30.49 Aligned_cols=46 Identities=13% Similarity=0.284 Sum_probs=36.7
Q ss_pred EEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 280 EALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEA 325 (414)
Q Consensus 280 eal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~ 325 (414)
.+.-|.+-+....-|+-+-+++.+.|..|..-|.+|.+-+++|.+-
T Consensus 241 ~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~E 286 (552)
T KOG2129|consen 241 PDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAE 286 (552)
T ss_pred ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566688889999999999999999999999999763
No 187
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=31.93 E-value=20 Score=22.63 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=8.2
Q ss_pred cccceeeeccC
Q 015015 398 KKKWFNLNLKG 408 (414)
Q Consensus 398 ~~~~~~~~~~~ 408 (414)
-+|||||.-+-
T Consensus 7 ~s~WfniD~rI 17 (26)
T TIGR02616 7 LSKWFNIDNRI 17 (26)
T ss_pred CCceEEcchhh
Confidence 47899997554
No 188
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.87 E-value=2.4e+02 Score=22.95 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=36.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLK 341 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (414)
...|+.+...-...-.||.+.+.+-......-.++..|+..-++.|..+|.
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555666666677777777777777777788888888888888774
No 189
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.72 E-value=1.9e+02 Score=28.55 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 332 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~ 332 (414)
|...+.+|....+||.+-|.|+.++..+..++..|+.+-
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555666666666666666655544
No 190
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.51 E-value=2.1e+02 Score=27.37 Aligned_cols=54 Identities=7% Similarity=0.277 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHh
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDA 345 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 345 (414)
..|..++.++...+.++.+-+.+|..+...+..+..+|.+++..+=+.+-+=|+
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe 206 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEE 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999998887766644343
No 191
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=30.70 E-value=1.6e+02 Score=29.89 Aligned_cols=67 Identities=13% Similarity=0.310 Sum_probs=56.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhccccc
Q 015015 286 SYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 353 (414)
Q Consensus 286 s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 353 (414)
+++..-..|.+|+.+|..-+.++.++-.+-.+.-.++.+..++|...++.|+.++..-+ .+..|--+
T Consensus 110 a~~~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~a 176 (391)
T KOG1850|consen 110 AVEQFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGKA 176 (391)
T ss_pred HHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH
Confidence 34455677999999999999999999988889999999999999999999998887766 66666443
No 192
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.57 E-value=52 Score=22.55 Aligned_cols=7 Identities=14% Similarity=0.325 Sum_probs=5.2
Q ss_pred ccccccc
Q 015015 153 QCAHFFG 159 (414)
Q Consensus 153 ~C~~C~G 159 (414)
+||+|..
T Consensus 1 ~CP~C~~ 7 (41)
T PF13453_consen 1 KCPRCGT 7 (41)
T ss_pred CcCCCCc
Confidence 4888866
No 193
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.42 E-value=2.7e+02 Score=23.27 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=41.9
Q ss_pred hhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015015 291 SQKLKDIEAQILRK--RKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 291 ~~~i~~~E~~~~~~--k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
...|..+|.++... +.++.+++.+-.++.....++..+++.-..-++=||.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888 89999999999999988888888888776666555554
No 194
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.29 E-value=2.3e+02 Score=29.76 Aligned_cols=38 Identities=26% Similarity=0.218 Sum_probs=27.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQE 324 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~ 324 (414)
+.++-..|.+.|.+....+.|+-....||+..++++.+
T Consensus 15 ~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~ 52 (459)
T KOG0288|consen 15 LIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQE 52 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777765
No 195
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.27 E-value=2.6e+02 Score=28.15 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=46.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRD 344 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 344 (414)
...+-+.|..+..+|..+++++.+++.+-.+...+-++.+++-.+-..+|.++=+.++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677999999999999999999999999988888888877777766766655444
No 196
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.56 E-value=2.3e+02 Score=30.25 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhc
Q 015015 310 EFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSS 349 (414)
Q Consensus 310 ~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 349 (414)
..+.+|.++..+..+...++.+.+..+.++..++..+-.+
T Consensus 327 ~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~e 366 (562)
T PHA02562 327 EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAA 366 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555544433
No 197
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=29.24 E-value=41 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=21.0
Q ss_pred cCCCCcccce----------eccCCCCCCceEeeeeEEEEEEE
Q 015015 190 QDTNGGYGLA----------LQEDSEKTGKVTSAGMYFLHFQV 222 (414)
Q Consensus 190 ~~~CgG~G~~----------~~~~s~C~G~g~~~~~~~l~v~I 222 (414)
|+.|.|.|.+ ..+|+.|+|+.. +..+|+|..
T Consensus 733 Ce~C~GdG~ikIeM~FLpdVyv~CevC~GkRY--n~EtLev~y 773 (935)
T COG0178 733 CEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY--NRETLEVKY 773 (935)
T ss_pred CccccCCceEEEEeccCCCceeeCCCcCCccc--ccceEEEEE
Confidence 4899999865 357888999654 444555554
No 198
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=29.21 E-value=2.9e+02 Score=21.98 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=43.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
.....+++++..+....+|+.....|=.+....-.+.+.+.....+.++.+...=.++
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455677778888888888888888888888888888888888888888777654433
No 199
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.00 E-value=2.5e+02 Score=27.31 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=35.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
+.-..+..++.++...+.++.+.+.++.++....++.+..-.++. .++..+|+++
T Consensus 114 ~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~---~~~~~~~~~L 168 (239)
T COG1579 114 ELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEG---QELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344455566666777777777777778888877777766555543 4455555544
No 200
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=27.64 E-value=1.1e+02 Score=24.42 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 288 EDNSQKLKDIEAQILRKRKELREFEIEYRK 317 (414)
Q Consensus 288 ~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~ 317 (414)
.+.+..-+.+|.+|...-.++=++|++|.+
T Consensus 5 ~~l~~~k~~Le~~L~~lE~qIy~~Et~YL~ 34 (80)
T PF09340_consen 5 KELLQKKKKLEKDLAALEKQIYDKETSYLE 34 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888888877
No 201
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=27.46 E-value=3.7e+02 Score=25.31 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=34.6
Q ss_pred ccCCCeeEEEeCCceeEecCccEEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhH
Q 015015 257 LKAGTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYR---KALARFQEATNRYSQEK 333 (414)
Q Consensus 257 i~~gd~~f~r~gdnl~~~~~isleal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~---~~~~~~~~~~~~~~~~~ 333 (414)
++.|++++..+.. .+..+...|...+.++..-+.+++..+.-|. .+...|+++...|..-.
T Consensus 4 VkkG~~L~~ld~~----------------~~~~~~a~l~~a~~~l~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~ 67 (265)
T TIGR00999 4 VKKGQVLAVVDSP----------------ELAKMAAELKVAQKRVELARKTYEREKKLFEQGVIPRQEFESAEYALEEAQ 67 (265)
T ss_pred ccCCCEEEEEccH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 4567777766652 2233445566666666666666666554443 13334444444444444
Q ss_pred HHHHHHH
Q 015015 334 QSVDELL 340 (414)
Q Consensus 334 ~~~~~~~ 340 (414)
..+..+-
T Consensus 68 ~~~~~~~ 74 (265)
T TIGR00999 68 AEVQAAK 74 (265)
T ss_pred HHHHHHH
Confidence 3444433
No 202
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=27.40 E-value=41 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=21.1
Q ss_pred cCCCCcccce----------eccCCCCCCceEeeeeEEEEEEE
Q 015015 190 QDTNGGYGLA----------LQEDSEKTGKVTSAGMYFLHFQV 222 (414)
Q Consensus 190 ~~~CgG~G~~----------~~~~s~C~G~g~~~~~~~l~v~I 222 (414)
|+.|.|.|.+ ...|+.|+|+....+. |.|.+
T Consensus 741 C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~--l~v~~ 781 (943)
T PRK00349 741 CEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRET--LEVKY 781 (943)
T ss_pred CCcccccceEEEEeccCCCccccCccccCccccccc--eEEEE
Confidence 6888888865 2578889887755553 44444
No 203
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=27.33 E-value=3.6e+02 Score=24.20 Aligned_cols=25 Identities=8% Similarity=0.318 Sum_probs=17.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHH
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEI 313 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~ 313 (414)
.....+..++.||...-++|..|+.
T Consensus 24 ~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 24 KVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777777777777777776
No 204
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.27 E-value=2.3e+02 Score=28.20 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=39.6
Q ss_pred hhhhhhhHHHHHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHhhhhh-------HHHHHHHHHhHHhhhhcc
Q 015015 288 EDNSQKLKDIEAQILRKRKE--LREFEIEYRKA-----LARFQEATNRYSQE-------KQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 288 ~~~~~~i~~~E~~~~~~k~e--~~~f~~e~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~~~ 350 (414)
+.|+.+|.++|.|+-+.++| ..+|+-|=.|| +.+.++....|... ++.-+.|-+.|+.|-.++
T Consensus 14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 35889999999998877776 45677776554 44555544444332 334455556666665544
No 205
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.23 E-value=2.2e+02 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.466 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015015 303 RKRKELREFEIEYRKALARFQEATNRYSQE 332 (414)
Q Consensus 303 ~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~ 332 (414)
.++.....+..+|.+++..|..+=.+|.++
T Consensus 86 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~ 115 (117)
T smart00503 86 TRKAQTEKLRKKFKEVMNEFQRLQRKYRER 115 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777766643
No 206
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.91 E-value=2.4e+02 Score=27.38 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=23.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQ 331 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~ 331 (414)
+..|..+..++.+.......+..+|..|++..+....++..
T Consensus 9 L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~ 49 (239)
T COG1579 9 LLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEA 49 (239)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655555666666555555554444433
No 207
>PRK14164 heat shock protein GrpE; Provisional
Probab=26.79 E-value=2.3e+02 Score=27.15 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 015015 299 AQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS 335 (414)
Q Consensus 299 ~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~ 335 (414)
+++...+.++..++..|+-+++.|++.-.|..+|.+.
T Consensus 77 ~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~ 113 (218)
T PRK14164 77 GEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQA 113 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666665544
No 208
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.54 E-value=3.4e+02 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=14.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKAL 319 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~ 319 (414)
....|..+|.+......||.+++.|..++.
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~ 77 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELD 77 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455544445555555554444433
No 209
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....
Probab=26.33 E-value=76 Score=21.67 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=18.2
Q ss_pred ccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCC
Q 015015 153 QCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNG 194 (414)
Q Consensus 153 ~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~Cg 194 (414)
+|+.|..... ++.+.|....+-...++|.|..|+
T Consensus 2 ~Cp~Cg~~~a--------~~~~~Q~rsaDE~~T~fy~C~~C~ 35 (39)
T PF01096_consen 2 KCPKCGHNEA--------VFFQIQTRSADEPMTLFYVCCNCG 35 (39)
T ss_dssp --SSS-SSEE--------EEEEESSSSSSSSSEEEEEESSST
T ss_pred CCcCCCCCeE--------EEEEeeccCCCCCCeEEEEeCCCC
Confidence 5888876322 223334444556667777777776
No 210
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=26.11 E-value=2.1e+02 Score=29.24 Aligned_cols=53 Identities=8% Similarity=0.181 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHhHHhhhh
Q 015015 296 DIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQS-VDELLKQRDAIHS 348 (414)
Q Consensus 296 ~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~ 348 (414)
.+-.....+=..|..+|.|+.++-++|.+.+.++.++-+. ..-|..+|.+|-.
T Consensus 34 ~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~~~Ply~kR~eII~ 87 (337)
T PTZ00007 34 HLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDLYNPIYDKRKEALV 87 (337)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3333445555666666677766666666665555544432 2566677766654
No 211
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=25.87 E-value=3.9e+02 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLK 341 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (414)
-...|..++..|..+.+-+..++-||....-.|..+-.|+.....+=.+|+.
T Consensus 128 L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 128 LEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888888888888888888888888877777777677764
No 212
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.73 E-value=4.2e+02 Score=24.57 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 295 KDIEAQILRKRKELREFEIEYRKALARFQEATN 327 (414)
Q Consensus 295 ~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~ 327 (414)
.+++.+|...+.|...++.+-.+...+++.+..
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek 155 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEK 155 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 213
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=25.58 E-value=63 Score=31.90 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=20.5
Q ss_pred ccccccccce-eeeeeeccc--eeEEEEeeeccCcceeeecccCCCCccc
Q 015015 151 EKQCAHFFGV-TINDQQAEA--GIVVRVTSTAQSKFKLLYFEQDTNGGYG 197 (414)
Q Consensus 151 ~k~C~~C~G~-~i~~~~~~~--G~v~~~~s~C~~kfkli~f~~~~CgG~G 197 (414)
...||.|.+. .+....... |.-.-.++-|...-.....-|+.||-..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 4579999873 222222222 6656667888888888888889987544
No 214
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.43 E-value=1.9e+02 Score=27.37 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=16.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 288 EDNSQKLKDIEAQILRKRKELREFEIEYRK 317 (414)
Q Consensus 288 ~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~ 317 (414)
.+....|.+++.+|...+.+.++-..|..+
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455666666666666555544444433
No 215
>PRK09039 hypothetical protein; Validated
Probab=25.40 E-value=3.3e+02 Score=27.68 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=34.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH--------HhHHhhhhc
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL--------KQRDAIHSS 349 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~r~~~~~~ 349 (414)
++++-..|..+-.+|...|.+|..++.+-.++..+-.+...++..-...++.+| .-|.+++..
T Consensus 132 ~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~ 202 (343)
T PRK09039 132 SARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGR 202 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 344444555555566666666666666655555555555555555555555555 446666533
No 216
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=25.13 E-value=75 Score=20.28 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhCC
Q 015015 30 DQEIKTAYRKLALKYHP 46 (414)
Q Consensus 30 ~~eIk~ayr~la~~~HP 46 (414)
.++.|.+-|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47889999999999993
No 217
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=25.13 E-value=38 Score=17.97 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=9.7
Q ss_pred HHHHHhhhhcccc
Q 015015 58 LFKEVAYSYSILS 70 (414)
Q Consensus 58 ~f~~i~~AyevLs 70 (414)
.|..|..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 218
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.06 E-value=3.5e+02 Score=23.70 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
+..++.++.....++...+...+.+..++.......+.+++++..|
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555556666666666555555555555444
No 219
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=25.05 E-value=2.1e+02 Score=33.33 Aligned_cols=53 Identities=21% Similarity=0.338 Sum_probs=41.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
+...+..++..|..++.||.+.++.|.+....=.-...|.....+.-.+||..
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K 378 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK 378 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 66678899999999999999999999988877666666777666666666643
No 220
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.02 E-value=2.5e+02 Score=22.46 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 015015 17 DPYEVLCVSRDSSDQEIKTAYRKLALKYHPDKNV 50 (414)
Q Consensus 17 d~Y~iLgv~~~as~~eIk~ayr~la~~~HPDk~~ 50 (414)
|--.+-|+.|-||.+||+.|-.+..+|..=-..|
T Consensus 4 nI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P 37 (78)
T PF10041_consen 4 NIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP 37 (78)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence 3445668889999999999999999998554444
No 221
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=24.92 E-value=5.3e+02 Score=23.46 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 015015 293 KLKDIEAQILRKRKELREF 311 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f 311 (414)
.|++||+=|.+.++.|...
T Consensus 92 ~iTTVEGlL~~i~~~L~~~ 110 (163)
T TIGR00340 92 YISNIEGVLERIEEVLDTA 110 (163)
T ss_pred eEEehHhHHHHHHHHHHHh
Confidence 3788899999888888754
No 222
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=24.04 E-value=2.1e+02 Score=32.46 Aligned_cols=50 Identities=24% Similarity=0.473 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHhH
Q 015015 294 LKDIEAQILRKRK---ELREFEIEYRKALARFQEATNRYS-QEKQSVDELLKQR 343 (414)
Q Consensus 294 i~~~E~~~~~~k~---e~~~f~~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r 343 (414)
.++++.-+..+|- -..+..+||..|.+-|++.+.|+. +|+|.+.+|=+.|
T Consensus 874 ~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~r 927 (1259)
T KOG0163|consen 874 YRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLR 927 (1259)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455555555552 245678999999999999999998 5666666554444
No 223
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.01 E-value=94 Score=31.32 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=25.7
Q ss_pred ccccccccccee---eeeeeccceeEEEEeeeccCcceeeecccCCCCcc
Q 015015 150 VEKQCAHFFGVT---INDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNGGY 196 (414)
Q Consensus 150 ~~k~C~~C~G~~---i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~CgG~ 196 (414)
....||.|.+.- +.......|.-.-.++.|...-..+.--|+.|+-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 345788888732 21111233554444566766666666666666543
No 224
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=23.99 E-value=3.6e+02 Score=26.43 Aligned_cols=49 Identities=18% Similarity=0.373 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 340 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (414)
..++.+.+.+..-+.++.+-+.+|.++...-...+.+|.+++..+=+..
T Consensus 168 ~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~ 216 (258)
T cd07681 168 EQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEIC 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5688889999999999999999999999999999999999987765444
No 225
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=23.82 E-value=1e+02 Score=21.16 Aligned_cols=34 Identities=6% Similarity=0.175 Sum_probs=19.0
Q ss_pred ccccccceeeeeeeccceeEEEEeeeccCcceeeecccCCCC
Q 015015 153 QCAHFFGVTINDQQAEAGIVVRVTSTAQSKFKLLYFEQDTNG 194 (414)
Q Consensus 153 ~C~~C~G~~i~~~~~~~G~v~~~~s~C~~kfkli~f~~~~Cg 194 (414)
.|+.|.+...+ +.+.|....+-...++|.|..|+
T Consensus 2 ~Cp~C~~~~a~--------~~q~Q~RsaDE~mT~fy~C~~C~ 35 (40)
T smart00440 2 PCPKCGNREAT--------FFQLQTRSADEPMTVFYVCTKCG 35 (40)
T ss_pred cCCCCCCCeEE--------EEEEcccCCCCCCeEEEEeCCCC
Confidence 58888763332 22233334455556677777776
No 226
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=23.64 E-value=4.9e+02 Score=22.66 Aligned_cols=83 Identities=11% Similarity=0.078 Sum_probs=44.2
Q ss_pred hccCCCCCCcceeccCCCeeEEEeCCce---eEe--------cCccE---EEecC--cchhhhhhhhHHHHHHHHHHHHH
Q 015015 244 KRLEGLQPCEVSELKAGTHIFAVYGDNF---FKT--------ATYTI---EALCA--KSYEDNSQKLKDIEAQILRKRKE 307 (414)
Q Consensus 244 ~rl~g~~~~~~~~i~~gd~~f~r~gdnl---~~~--------~~isl---eal~g--~s~~~~~~~i~~~E~~~~~~k~e 307 (414)
--||+..| -+..+.+|...+...++++ +.. ..++| .|..+ +.+..+...+...|.+|...+
T Consensus 33 gIL~~Hap-lit~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n~v~Ilad~ae~~eeID~~~a~~a~erAe~~L~~~~-- 109 (133)
T PRK00539 33 GLNRNRAP-LIAAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENFVFADELDYDETLKRKKELERKIKHTK-- 109 (133)
T ss_pred eecCCCcc-eEeEecceEEEEEECCCcEEEEEEeeeEEEEECCEEEEEECeEEchhhCCHHHHHHHHHHHHHHHHhCc--
Confidence 33666665 2336667766665433332 111 11221 22232 333345555666666554422
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015015 308 LREFEIEYRKALARFQEATNRYSQE 332 (414)
Q Consensus 308 ~~~f~~e~~~~~~~~~~~~~~~~~~ 332 (414)
-..+|..|......+..|+.+.
T Consensus 110 ---~~~~~~~a~~~L~ra~~Rl~~~ 131 (133)
T PRK00539 110 ---DTKLNIKIEQNLMFELLKLSEK 131 (133)
T ss_pred ---ChHHHHHHHHHHHHHHHHHhhc
Confidence 2257888888888888887764
No 227
>PHA03161 hypothetical protein; Provisional
Probab=23.63 E-value=3.1e+02 Score=24.70 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=34.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 340 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (414)
...|..++..|..+++|+.-|..==+......++.+.|..+.+++|..=|
T Consensus 60 ~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~EL 109 (150)
T PHA03161 60 EGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEI 109 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999999988877555566666666666666555544433
No 228
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=23.57 E-value=4.2e+02 Score=26.20 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=49.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhhhhccc
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAIHSSFT 351 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 351 (414)
+.......+..|..++.||...+.|-.++.+...++..|.++-+..+-+|=-+|-.+...++
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~ 252 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIK 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556678888899999999999999999999999999888888877777777766553
No 229
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.22 E-value=3.3e+02 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=23.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREFEIEYRKALARFQE 324 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~ 324 (414)
--..|+..|+++...|.++..++.+-.++-...-.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888888888888888887765555444433
No 230
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=23.14 E-value=4.3e+02 Score=26.56 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=40.0
Q ss_pred chhhhhhhhHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH---------
Q 015015 286 SYEDNSQKLKDIEA---------------------QILRKRKELREFEIEYRKALARFQEATNRYSQEKQS--------- 335 (414)
Q Consensus 286 s~~~~~~~i~~~E~---------------------~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~--------- 335 (414)
++.+-...|.+||. ++-..|..|...+..|-+..+.|.+.+.-+..++..
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666777776 566677777777777777777776655544444444
Q ss_pred -HHHHHHhHHhhhhc
Q 015015 336 -VDELLKQRDAIHSS 349 (414)
Q Consensus 336 -~~~~~~~r~~~~~~ 349 (414)
+.+-|++|+++-..
T Consensus 158 ~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 158 ELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44455666555443
No 231
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.94 E-value=3.2e+02 Score=25.59 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 300 QILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 300 ~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
+|...+.++.+++..|.-+++.|++.-.|..+|.+.+
T Consensus 44 ~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~ 80 (191)
T PRK14149 44 IKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMA 80 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777788888888888888888888776654
No 232
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=22.92 E-value=1.9e+02 Score=28.55 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015015 301 ILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 301 ~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
-...|..|.+...+|..-+.+|+++++.++ +.|..||.+
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneft---thV~nlL~e 140 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFT---THVMNLLRE 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 345777788888889999999999887765 446777764
No 233
>PRK14150 heat shock protein GrpE; Provisional
Probab=22.80 E-value=3.2e+02 Score=25.56 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 294 LKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
|..++.++...++ +++..|+-+++.|++.-.|..+|.+.+
T Consensus 43 i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~ 82 (193)
T PRK14150 43 IAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKA 82 (193)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444544444333 467788889999999988888887543
No 234
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=22.77 E-value=77 Score=30.73 Aligned_cols=9 Identities=33% Similarity=0.272 Sum_probs=5.5
Q ss_pred CCCCcccce
Q 015015 191 DTNGGYGLA 199 (414)
Q Consensus 191 ~~CgG~G~~ 199 (414)
|.|.|+|.+
T Consensus 42 PTCqGtGrI 50 (238)
T PF07092_consen 42 PTCQGTGRI 50 (238)
T ss_pred CCCcCCccC
Confidence 666666654
No 235
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.75 E-value=4.7e+02 Score=24.37 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=38.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQ 342 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (414)
.++..+..+|.++...+.++..+.......+..+.++-.++.+....-+.|+..
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667777777777777777777777777777777777777776666654443
No 236
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.47 E-value=4.3e+02 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKA 318 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~ 318 (414)
...+..++.+|...+.++...+.+...+
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~ 96 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQAL 96 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666655555443
No 237
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=22.31 E-value=4.2e+02 Score=25.02 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHHHHH
Q 015015 290 NSQKLKDIEAQILRKRKE 307 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e 307 (414)
+....+.++.+|..+|..
T Consensus 121 a~~~~q~a~~~l~kkr~~ 138 (224)
T cd07623 121 VWQNWQNAQQTLTKKREA 138 (224)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666666665
No 238
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=22.18 E-value=5e+02 Score=22.26 Aligned_cols=41 Identities=12% Similarity=0.347 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015015 303 RKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 303 ~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
.++.....+..+|.+++..|..+=.+|.+.. .+.+..+-.|
T Consensus 85 ~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~---k~~i~Rq~~i 125 (151)
T cd00179 85 IRKTQHSGLSKKFVEVMTEFNKAQRKYRERY---KERIQRQLEI 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 4577778888899999999999888888663 6666666444
No 239
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=22.18 E-value=3.1e+02 Score=19.79 Aligned_cols=53 Identities=19% Similarity=0.374 Sum_probs=34.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDEL 339 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (414)
|.++...|.++=.+|.+.---|.+--..|.+++.-+...-.++..-.+.|..|
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555666666666666666677777778888877777777766666655543
No 240
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=22.15 E-value=5.1e+02 Score=22.25 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
Q 015015 294 LKDIEAQILRKRKELREFE--IEYRKALARFQEATNRYS 330 (414)
Q Consensus 294 i~~~E~~~~~~k~e~~~f~--~e~~~~~~~~~~~~~~~~ 330 (414)
+..++..+..-++.|++.+ .|+.+|+.+...+..|+.
T Consensus 89 ~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l~~a~~rl~ 127 (130)
T TIGR01216 89 EAEAEKALEAAEKLLESAEDDKDLAEALLKLKKARAQLE 127 (130)
T ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444332 567777777776666654
No 241
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.11 E-value=3.6e+02 Score=21.56 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015015 293 KLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQE 332 (414)
Q Consensus 293 ~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~ 332 (414)
+|..-=..|..+|.-+.+++..++..+.+|++=+.|+..+
T Consensus 33 ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 33 KINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 242
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=22.04 E-value=4.2e+02 Score=26.76 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHhHHhhhhcc
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATN---RYSQEKQSVDELLKQRDAIHSSF 350 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~r~~~~~~~ 350 (414)
+..+...+...+.+|..++.+|..++.+..+....|++++. ++.++.+.+..-|..=+.+-..+
T Consensus 223 l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 223 LEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
No 243
>smart00721 BAR BAR domain.
Probab=21.88 E-value=1.5e+02 Score=27.48 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHh
Q 015015 307 ELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDA 345 (414)
Q Consensus 307 e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 345 (414)
+|.+.+.|+..|+..|++....+..++ -.|+..|..
T Consensus 171 kl~~~e~el~~ak~~fe~~~~~l~~~l---~~l~~~~~~ 206 (239)
T smart00721 171 KLAKAEEELRKAKQEFEESNAQLVEEL---PQLVASRVD 206 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHH
Confidence 566689999999999999998888886 555666655
No 244
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=21.42 E-value=3.7e+02 Score=21.14 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHH
Q 015015 299 AQILRKRKELREFEIEYRKALARFQEAT---NRYSQEKQSVDE 338 (414)
Q Consensus 299 ~~~~~~k~e~~~f~~e~~~~~~~~~~~~---~~~~~~~~~~~~ 338 (414)
.+.-+.|+.|.+.+.|---|+=++++++ .|..+|..+..+
T Consensus 22 LE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~ 64 (70)
T PF08606_consen 22 LENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEARE 64 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHH
Confidence 3555678889999999988888888744 455555444333
No 245
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.42 E-value=1.3e+02 Score=26.01 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHhh
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQRDAI 346 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 346 (414)
.+|..++..|...+..|.+|+.+-..+.....++ .++|...|.+|..+
T Consensus 62 ~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~-------~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 62 TNLVGMDEKIEELRKPLSQFREEVESVRDELDNT-------QEEIEDKLEERKEL 109 (133)
T ss_dssp ------------HHHHHHHHHHHHHHHHHS-STT-------HHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4567777778888888888887766665554444 44444444444443
No 246
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.08 E-value=2.7e+02 Score=30.28 Aligned_cols=54 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhH
Q 015015 287 YEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELLKQR 343 (414)
Q Consensus 287 ~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 343 (414)
+.++...|..+|.++..++.+|..+..=-.+-...++++-.+|.+.. +.||+.|
T Consensus 107 ~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~r---k~ll~~~ 160 (569)
T PRK04778 107 INEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELR---KSLLANR 160 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcC
No 247
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=20.78 E-value=4.9e+02 Score=23.12 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 015015 291 SQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVDELL 340 (414)
Q Consensus 291 ~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (414)
...|.+++.+|.....++++|+.|-..+...=+.+..-+.+....|.+|=
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666667776777777777766666666666666666655565553
No 248
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.65 E-value=5.2e+02 Score=21.82 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=29.9
Q ss_pred CCeeEEEeCCceeEecCccEEEecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015015 260 GTHIFAVYGDNFFKTATYTIEALCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYRKALARFQ 323 (414)
Q Consensus 260 gd~~f~r~gdnl~~~~~isleal~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~ 323 (414)
.+.++.--|.++|...++. ....-...+|..++.++....+++.+.+.++..+.....
T Consensus 68 ~~~v~v~iG~g~~vE~~~~------eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 68 TDKVLVDLGTGYYVEKDLE------EAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred CCEEEEEcCCCEEEEecHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555566666555444 111223344555666666666666666655555554433
No 249
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=20.38 E-value=4.9e+02 Score=25.06 Aligned_cols=46 Identities=7% Similarity=0.217 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 015015 292 QKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEKQSVD 337 (414)
Q Consensus 292 ~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~ 337 (414)
..++.++..+..-+.++.+=+.+|..+...+.+++.+|.+++...-
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c 199 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKAC 199 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578899999999999999999999999999999999999875433
No 250
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.36 E-value=4.4e+02 Score=22.98 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015015 299 AQILRKRKELREFEIEYRKALARFQEATNRYSQE 332 (414)
Q Consensus 299 ~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~ 332 (414)
.++...-.++..++.+|.+...++.++..+|...
T Consensus 62 ~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~ 95 (150)
T PF07200_consen 62 SQLQELYEELKELESEYQEKEQQQDELSSNYSPD 95 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH
Confidence 3455555555566666666666666666665544
No 251
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=20.35 E-value=4.7e+02 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHhhhhhHHHH
Q 015015 290 NSQKLKDIEAQILRKRKELREF------------EIEYRKALARFQEATNRYSQEKQSV 336 (414)
Q Consensus 290 ~~~~i~~~E~~~~~~k~e~~~f------------~~e~~~~~~~~~~~~~~~~~~~~~~ 336 (414)
+......++..|..+|..+.++ +.|++++..+..++..+|..-...+
T Consensus 131 ~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~ 189 (234)
T cd07664 131 CWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFEQISKTI 189 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444433 3466665555555555444444333
No 252
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=20.11 E-value=4.4e+02 Score=25.92 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhHHHHHHHHHhHHhhhhccccc
Q 015015 299 AQILRKRKELREFEIEYRKAL----ARFQEATNRYSQEKQSVDELLKQRDAIHSSFTVT 353 (414)
Q Consensus 299 ~~~~~~k~e~~~f~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 353 (414)
.....+-..+-.|+.+|+.-+ ..|..|..++..+..+|+.+.+.|+..-..++..
T Consensus 180 ~~~~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~ 238 (267)
T PF09903_consen 180 ENKKEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSS 238 (267)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677777776654 4567799999999999999999999998888643
No 253
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.08 E-value=5.7e+02 Score=22.01 Aligned_cols=45 Identities=18% Similarity=0.416 Sum_probs=26.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 015015 289 DNSQKLKDIEAQILRKRKELREFEIEYRKALARFQEATNRYSQEK 333 (414)
Q Consensus 289 ~~~~~i~~~E~~~~~~k~e~~~f~~e~~~~~~~~~~~~~~~~~~~ 333 (414)
+++..|..+..++...+.++..++.+-..|.....+.-..+..+.
T Consensus 56 ~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk 100 (132)
T PF07926_consen 56 EDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQK 100 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345566666666666666666666666555555555444444433
No 254
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.08 E-value=3.8e+02 Score=28.57 Aligned_cols=52 Identities=12% Similarity=0.375 Sum_probs=31.1
Q ss_pred ecCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhH
Q 015015 282 LCAKSYEDNSQKLKDIEAQILRKRKELREFEIEYR---KALARFQEATNRYSQEK 333 (414)
Q Consensus 282 l~g~s~~~~~~~i~~~E~~~~~~k~e~~~f~~e~~---~~~~~~~~~~~~~~~~~ 333 (414)
+|+-++.+....+..++.++...+.++..++.... +.+.++.++..++.+..
T Consensus 289 ~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~ 343 (562)
T PHA02562 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELK 343 (562)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555455566666677777776666666555 55555555555554443
Done!