Query 015016
Match_columns 414
No_of_seqs 185 out of 2073
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 02:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 2.4E-60 5.2E-65 406.4 23.1 387 14-404 14-401 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 6.5E-51 1.4E-55 371.6 30.4 368 17-407 65-470 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 7.3E-45 1.6E-49 332.0 25.7 323 67-407 58-415 (476)
4 KOG1427 Uncharacterized conser 100.0 3.2E-35 6.9E-40 252.2 16.0 300 17-348 74-398 (443)
5 KOG0783 Uncharacterized conser 100.0 2.2E-28 4.7E-33 234.7 16.7 308 20-360 142-458 (1267)
6 KOG0783 Uncharacterized conser 100.0 1.4E-28 3.1E-33 235.9 12.9 308 71-409 136-456 (1267)
7 KOG1428 Inhibitor of type V ad 99.9 1.4E-23 3E-28 209.4 18.9 308 58-406 481-841 (3738)
8 KOG1428 Inhibitor of type V ad 99.8 4E-19 8.7E-24 178.1 23.7 352 16-398 494-891 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 8.8E-13 1.9E-17 87.5 4.2 50 76-125 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 1.1E-12 2.5E-17 86.9 3.5 50 348-399 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.1 6.1E-11 1.3E-15 68.2 4.0 30 231-260 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.1 7.5E-11 1.6E-15 67.8 4.3 30 112-141 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.0 5.8E-12 1.3E-16 123.6 -6.9 145 46-193 4-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.9 2.7E-11 5.9E-16 119.0 -7.6 145 100-259 4-156 (850)
15 PF11725 AvrE: Pathogenicity f 94.8 1.3 2.8E-05 49.0 16.2 102 291-403 710-815 (1774)
16 KOG0315 G-protein beta subunit 94.7 2.5 5.5E-05 37.1 14.9 109 233-356 131-244 (311)
17 PF11725 AvrE: Pathogenicity f 93.3 4.2 9.2E-05 45.2 16.3 71 325-411 697-772 (1774)
18 KOG3669 Uncharacterized conser 92.9 1.4 3E-05 43.2 11.0 109 117-253 190-299 (705)
19 KOG3669 Uncharacterized conser 87.3 33 0.00072 34.1 22.8 70 57-134 228-299 (705)
20 COG4257 Vgb Streptogramin lyas 86.7 7.6 0.00016 34.9 9.6 134 16-187 69-205 (353)
21 PF07569 Hira: TUP1-like enhan 86.6 2.2 4.7E-05 37.5 6.4 70 286-357 14-95 (219)
22 PF07569 Hira: TUP1-like enhan 85.1 4.4 9.5E-05 35.6 7.6 79 109-188 12-93 (219)
23 KOG0943 Predicted ubiquitin-pr 85.1 0.16 3.4E-06 53.5 -1.6 129 227-359 372-507 (3015)
24 KOG4693 Uncharacterized conser 83.3 34 0.00073 30.7 15.7 21 338-358 292-312 (392)
25 KOG0943 Predicted ubiquitin-pr 79.9 0.31 6.7E-06 51.5 -1.8 131 109-258 373-507 (3015)
26 smart00706 TECPR Beta propelle 73.3 8 0.00017 22.5 3.8 25 110-134 8-33 (35)
27 KOG0646 WD40 repeat protein [G 69.6 1.1E+02 0.0024 29.6 19.1 85 68-171 94-185 (476)
28 KOG0315 G-protein beta subunit 69.2 84 0.0018 28.0 21.1 146 70-256 45-197 (311)
29 KOG0293 WD40 repeat-containing 63.1 1.5E+02 0.0032 28.6 12.0 108 229-358 396-514 (519)
30 PF12341 DUF3639: Protein of u 59.6 26 0.00056 19.3 3.6 24 229-252 2-25 (27)
31 KOG4441 Proteins containing BT 58.9 2.1E+02 0.0045 29.3 12.9 60 17-86 282-342 (571)
32 PHA02790 Kelch-like protein; P 58.7 88 0.0019 31.1 10.2 49 299-357 403-455 (480)
33 KOG1034 Transcriptional repres 56.1 46 0.001 30.8 6.7 55 18-83 327-381 (385)
34 PF06739 SBBP: Beta-propeller 55.7 15 0.00033 22.0 2.7 19 68-86 15-33 (38)
35 KOG1900 Nuclear pore complex, 55.0 2.4E+02 0.0051 31.5 12.7 59 71-136 93-156 (1311)
36 KOG4693 Uncharacterized conser 52.7 33 0.00071 30.7 5.2 109 238-358 80-201 (392)
37 PHA03098 kelch-like protein; P 50.9 2.7E+02 0.006 27.9 14.4 18 341-358 480-497 (534)
38 PHA03098 kelch-like protein; P 49.6 1.5E+02 0.0033 29.8 10.4 18 171-191 480-497 (534)
39 COG4257 Vgb Streptogramin lyas 49.0 2.1E+02 0.0046 26.1 9.7 101 67-190 63-167 (353)
40 PF03785 Peptidase_C25_C: Pept 47.4 43 0.00093 24.0 4.1 42 99-142 7-49 (81)
41 PHA02713 hypothetical protein; 45.4 63 0.0014 32.9 6.8 15 71-85 346-360 (557)
42 PF01436 NHL: NHL repeat; Int 45.1 39 0.00084 18.5 3.0 18 121-138 5-22 (28)
43 cd00200 WD40 WD40 domain, foun 45.1 2E+02 0.0044 24.7 27.7 69 57-137 53-123 (289)
44 PF02239 Cytochrom_D1: Cytochr 44.4 2.9E+02 0.0063 26.4 13.2 73 163-262 29-103 (369)
45 KOG0646 WD40 repeat protein [G 44.2 3.2E+02 0.0068 26.7 14.4 66 111-188 83-151 (476)
46 TIGR03548 mutarot_permut cycli 43.8 1.9E+02 0.0042 26.8 9.5 16 342-357 297-312 (323)
47 KOG1900 Nuclear pore complex, 43.6 5.2E+02 0.011 29.1 13.3 167 17-196 96-278 (1311)
48 KOG1408 WD40 repeat protein [F 43.3 4.1E+02 0.0089 27.8 13.9 103 115-254 138-247 (1080)
49 PF07646 Kelch_2: Kelch motif; 41.9 26 0.00056 22.1 2.3 17 341-357 4-20 (49)
50 KOG1274 WD40 repeat protein [G 37.8 5.4E+02 0.012 27.6 13.2 73 117-191 13-87 (933)
51 TIGR01062 parC_Gneg DNA topois 36.4 5.5E+02 0.012 27.3 13.6 136 50-197 519-661 (735)
52 KOG0649 WD40 repeat protein [G 35.9 3.2E+02 0.007 24.4 9.0 46 229-275 63-109 (325)
53 PF13964 Kelch_6: Kelch motif 35.0 33 0.00071 21.6 2.0 19 341-359 4-22 (50)
54 PF13418 Kelch_4: Galactose ox 34.8 37 0.0008 21.2 2.2 16 120-135 4-19 (49)
55 KOG0649 WD40 repeat protein [G 34.5 1.2E+02 0.0026 27.0 5.7 69 294-365 22-98 (325)
56 cd00200 WD40 WD40 domain, foun 33.7 3.1E+02 0.0066 23.5 30.2 110 57-190 11-123 (289)
57 TIGR03548 mutarot_permut cycli 33.2 2.9E+02 0.0063 25.6 8.9 17 121-137 216-232 (323)
58 PHA02790 Kelch-like protein; P 33.0 1.9E+02 0.004 28.8 7.8 14 124-137 358-371 (480)
59 PF13854 Kelch_5: Kelch motif 32.7 44 0.00096 20.2 2.2 18 341-358 7-24 (42)
60 PLN03215 ascorbic acid mannose 32.3 2.1E+02 0.0046 27.4 7.5 51 70-135 175-225 (373)
61 KOG4441 Proteins containing BT 32.1 5.7E+02 0.012 26.2 16.0 56 299-356 471-530 (571)
62 PF07250 Glyoxal_oxid_N: Glyox 31.3 3.8E+02 0.0083 23.9 9.5 123 7-138 65-190 (243)
63 TIGR01063 gyrA DNA gyrase, A s 28.8 7.6E+02 0.016 26.6 18.9 167 55-253 534-715 (800)
64 KOG2096 WD40 repeat protein [G 28.3 5E+02 0.011 24.3 22.1 87 43-137 72-163 (420)
65 KOG2055 WD40 repeat protein [G 28.2 5.8E+02 0.013 25.0 14.6 66 236-312 387-455 (514)
66 KOG1274 WD40 repeat protein [G 27.3 8.1E+02 0.018 26.4 19.7 37 99-136 47-85 (933)
67 PF07312 DUF1459: Protein of u 27.0 37 0.0008 24.0 1.2 11 22-32 58-69 (84)
68 KOG0289 mRNA splicing factor [ 26.6 6.1E+02 0.013 24.7 12.6 70 120-190 350-419 (506)
69 PRK02529 petN cytochrome b6-f 26.4 59 0.0013 18.6 1.7 16 348-363 17-32 (33)
70 KOG1034 Transcriptional repres 25.5 1.4E+02 0.0031 27.7 4.9 57 298-356 323-382 (385)
71 KOG2444 WD40 repeat protein [G 25.2 2.8E+02 0.0061 24.4 6.4 61 67-137 70-132 (238)
72 PF08450 SGL: SMP-30/Gluconola 23.6 5E+02 0.011 22.7 9.2 17 120-136 186-202 (246)
73 PF13938 DUF4213: Domain of un 23.6 1.3E+02 0.0029 21.7 3.7 23 107-129 9-31 (87)
74 KOG0278 Serine/threonine kinas 23.4 5.5E+02 0.012 23.1 11.8 39 99-137 134-173 (334)
75 PHA02713 hypothetical protein; 22.9 1.3E+02 0.0028 30.7 4.7 19 119-137 342-360 (557)
76 PF03456 uDENN: uDENN domain; 22.8 81 0.0017 21.3 2.3 18 170-187 43-60 (65)
77 PF01344 Kelch_1: Kelch motif; 22.8 80 0.0017 19.3 2.2 16 341-356 4-19 (47)
78 PF10168 Nup88: Nuclear pore c 22.8 7E+02 0.015 26.4 10.0 117 18-135 40-177 (717)
79 KOG0282 mRNA splicing factor [ 22.1 7.7E+02 0.017 24.3 14.5 75 290-365 393-470 (503)
80 KOG0293 WD40 repeat-containing 21.1 7.7E+02 0.017 23.9 11.7 67 287-358 398-471 (519)
81 KOG1240 Protein kinase contain 20.8 6.5E+02 0.014 28.3 9.2 76 111-192 1050-1130(1431)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=2.4e-60 Score=406.38 Aligned_cols=387 Identities=71% Similarity=1.218 Sum_probs=359.4
Q ss_pred cCCccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCC
Q 015016 14 TGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHG 93 (414)
Q Consensus 14 ~~~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~ 93 (414)
..+...|++..+|.--+.+.|..+.....+...|.++..+.+++|+.|+.||...|+++|+-+|+.|.||.|..||||++
T Consensus 14 s~e~~~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhg 93 (443)
T KOG1427|consen 14 SSEEKGGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHG 93 (443)
T ss_pred hhhcCCccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCcc
Confidence 34456789999999999999998877667889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCee-eeccceEEEEeCCCe
Q 015016 94 DKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVR-CLVSEVTATACGADF 172 (414)
Q Consensus 94 ~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~-~~~~~i~~is~G~~~ 172 (414)
+...+.+|+.|+.+...+|++-+||++|+++||++|.||+||+|++||||.+...+.....+.+ ...+.|+.|+||.++
T Consensus 94 D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~~v~cga~f 173 (443)
T KOG1427|consen 94 DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVTNVACGADF 173 (443)
T ss_pred chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccceeeccccce
Confidence 9999999999999999999999999999999999999999999999999999876655444444 445669999999999
Q ss_pred eEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEE
Q 015016 173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYT 252 (414)
Q Consensus 173 ~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~ 252 (414)
+++|. ..+ .|.++|..++||||++.+..++.++....+.|+.++.|.-+..+....|++++||.+|++|++++++||+
T Consensus 174 tv~l~-~~~-si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nkrVys 251 (443)
T KOG1427|consen 174 TVWLS-STE-SILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNKRVYS 251 (443)
T ss_pred EEEee-ccc-ceeecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCccEEE
Confidence 99999 788 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCc
Q 015016 253 WGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWN 332 (414)
Q Consensus 253 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~ 332 (414)
||.+.||.||+.+..+...|+.++.|+.....+ ..+.+|+.+++++.+-|++|.||.+.+.++++.+|.++..+++++
T Consensus 252 WGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~--~~~~~g~t~Sl~v~e~G~Lf~~g~~k~~ge~~mypkP~~dlsgwn 329 (443)
T KOG1427|consen 252 WGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGP--PNAILGYTGSLNVAEGGQLFMWGKIKNNGEDWMYPKPMMDLSGWN 329 (443)
T ss_pred eccccccccccccchhhHHHHHHHHhcCCCCCC--cceeeecccceeecccceeEEeeccccCcccccCCCchhhcCCcc
Confidence 999999999999999999999999887755543 379999999999999999999999999999999999999999999
Q ss_pred eEEEecCCceEEEEeCCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCc
Q 015016 333 LRCMDSGNMHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTN 404 (414)
Q Consensus 333 i~~i~~g~~h~~~l~~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~ 404 (414)
+..+.|+..|.++-.|..+.+||...+|.++-+...+.+...|..++.+.+.+|-+|++|..|+++|++.-.
T Consensus 330 l~~~~~~~~h~~v~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd~t~ 401 (443)
T KOG1427|consen 330 LRWMDSGSMHHFVGADSSCISWGHAQYGELLGGPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVDRTD 401 (443)
T ss_pred CCCcCccceeeeecccccccccccccccccccCccccccccCccccchhcceeccceeeccceEEEEEcccc
Confidence 999999999999999999999999998888877776788889999999999999999999999999998754
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=6.5e-51 Score=371.57 Aligned_cols=368 Identities=26% Similarity=0.404 Sum_probs=287.7
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccC--CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD 94 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 94 (414)
..-..||+||+|...+||++.+... ...|++.++. +...|.+++|| ..|+++|++||+||+||.|..|+||.-.
T Consensus 65 ~~~~~v~~~Gsn~~~eLGlg~de~~--~~~P~~~~~~~~d~~~i~~~acG--g~hsl~ld~Dg~lyswG~N~~G~Lgr~~ 140 (476)
T COG5184 65 VKMASVYSWGSNGMNELGLGNDETK--VDRPQLNPFGRIDKASIIKIACG--GNHSLGLDHDGNLYSWGDNDDGALGRDI 140 (476)
T ss_pred hheeeeEEEecCcceeeccCCchhc--ccCceecCcccccceeeEEeecC--CceEEeecCCCCEEEeccCccccccccc
Confidence 4467899999999999999985533 6889888887 66788999988 8999999999999999999999999865
Q ss_pred C----------------CCCCCceeeccC----CCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCccc--
Q 015016 95 K----------------IQRDRPTIVSEL----SKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIE-- 152 (414)
Q Consensus 95 ~----------------~~~~~p~~v~~~----~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~-- 152 (414)
. ....+|..|+.. ...++++++||++++++|+++|+||.||.+..+.++.+...+...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~ 220 (476)
T COG5184 141 HKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS 220 (476)
T ss_pred ccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccce
Confidence 2 124678888862 234799999999999999999999999999998888885554443
Q ss_pred --CcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeec-ccCCC
Q 015016 153 --PSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA-ALAGE 229 (414)
Q Consensus 153 --~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 229 (414)
++|+......|.++++|.+|.++|+ ++| ++|+||+|+.||||......... +..+. .+.-.
T Consensus 221 ~~~~p~~v~~~~i~qla~G~dh~i~lt-~~G-~vy~~Gs~qkgqlG~~~~e~~~~--------------~~lv~~~f~i~ 284 (476)
T COG5184 221 IQFTPLKVPKKAIVQLAAGADHLIALT-NEG-KVYGWGSNQKGQLGRPTSERLKL--------------VVLVGDPFAIR 284 (476)
T ss_pred eeeeeeecCchheeeeccCCceEEEEe-cCC-cEEEecCCcccccCCchhhhccc--------------ccccCChhhhh
Confidence 5666655557999999999999999 899 99999999999999877654322 11111 11223
Q ss_pred cEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCC--ccEEEecCCceEEEeCCCCEE
Q 015016 230 TIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPP--EAVISAGSVNSSCTAGGGQLY 307 (414)
Q Consensus 230 ~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~--i~~i~~g~~~s~~l~~~g~v~ 307 (414)
.|..|+||.+|++||+++|+||+||.|-+||||..+. ...+.............. |+.++++..|+++|..+|.||
T Consensus 285 ~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~--~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~ 362 (476)
T COG5184 285 NIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSD--GEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLY 362 (476)
T ss_pred hhhhcccCcceEEEEcCCCeEEEeccchhcccccCcc--cccceeeccccccccCCCceEEEEecCcceEEEEecCceEE
Confidence 4788999999999999999999999999999999832 222332222222222222 579999999999999999999
Q ss_pred EccCCCCCC----C--ceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeecc
Q 015016 308 MWGKLKNNG----D--DWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI 380 (414)
Q Consensus 308 ~wG~~~~~~----~--~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~ 380 (414)
.||++...+ . ....|.+.+......+.+++||..|.++.+ +|.||.||++++||||.++. ......|+.++.
T Consensus 363 a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~-~~~~~~pt~i~~ 441 (476)
T COG5184 363 AFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPK-EADVLVPTLIRQ 441 (476)
T ss_pred EecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCceEEecCchhhhccCCch-hhhccccccccc
Confidence 999987422 1 222222222222236999999999999999 89999999999999999987 677888888875
Q ss_pred --CCCceEEEEEecCCceEEEEccCcccc
Q 015016 381 --LEGMHVISVACGYGHSLVIVDRTNVGE 407 (414)
Q Consensus 381 --~~~~~v~~v~~G~~~t~~l~~~g~v~~ 407 (414)
+....++...+|..++++......+.+
T Consensus 442 ~~~~~~~~i~~g~~~~~~v~~~~~~~~~~ 470 (476)
T COG5184 442 PLLSGHNIILAGYGNQFSVIEETMDTVIE 470 (476)
T ss_pred cccCCCceEEeccCcceEEEecchhhhhh
Confidence 566688888888888887776555543
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.3e-45 Score=331.99 Aligned_cols=323 Identities=25% Similarity=0.383 Sum_probs=262.2
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCC-CCceeeccC--CCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCC
Q 015016 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQR-DRPTIVSEL--SKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLG 143 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~-~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg 143 (414)
..|....+.-..||+||+|..+|||++..... ..|++.+.. +...|++++||..|+++|++||+||+||.|..|+||
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 45777888899999999999999999987765 899998876 678899999999999999999999999999999999
Q ss_pred CCCC--------------C--CcccCcCeeee-----ccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCC
Q 015016 144 SGSI--------------R--NEIEPSPVRCL-----VSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNE 202 (414)
Q Consensus 144 ~~~~--------------~--~~~~~~~~~~~-----~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~ 202 (414)
.... . ....|..++.. ..++++++||++++++|+ ++| .||+||....+.++.+....
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~-~~G-~V~~~gt~r~~e~~~g~~~~ 215 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILT-ADG-RVYSWGTFRCGELGQGSYKN 215 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEc-cCC-cEEEecCccccccccccccc
Confidence 8762 1 12234333331 126999999999999999 899 99999999999998885554
Q ss_pred CcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCC
Q 015016 203 YNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNN 282 (414)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~ 282 (414)
... ...+++|.++. ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+...
T Consensus 216 s~k--------~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i- 283 (476)
T COG5184 216 SQK--------TSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAI- 283 (476)
T ss_pred ccc--------ceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhh-
Confidence 221 11345566554 357999999999999999999999999999999999887776666666544332
Q ss_pred CCCCccEEEecCCceEEEeCCCCEEEccCCCCCC--C--------ceeeeeecccCCCCceEEEecCCceEEEEe-CCCE
Q 015016 283 VLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG--D--------DWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSC 351 (414)
Q Consensus 283 ~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~--~--------~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~v 351 (414)
..|.+|+||.+|++||+++|++|+||-|.-.+ . ....|.....+++..|..|++|..|++++. +|.|
T Consensus 284 --~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l 361 (476)
T COG5184 284 --RNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTL 361 (476)
T ss_pred --hhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceE
Confidence 23568999999999999999999999986322 1 233455556667777999999999999999 9999
Q ss_pred EEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCcccc
Q 015016 352 ISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGE 407 (414)
Q Consensus 352 y~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~~ 407 (414)
|+||+++.+|||..+......+.|..+... .++.+++||..|+++.+++++||.
T Consensus 362 ~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~ 415 (476)
T COG5184 362 YAFGRGDRGQLGIQEEITIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYS 415 (476)
T ss_pred EEecCCccccccCcccceeecCCccccccc--cceEEEEecCccceeeccCCceEE
Confidence 999999999999988533666666666543 358999999999999999998853
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.2e-35 Score=252.24 Aligned_cols=300 Identities=23% Similarity=0.344 Sum_probs=233.7
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 96 (414)
.-+|+.|.||.|..||||.+. ......|+.|+.|.-.+|++.++| .+|+++||.+|.||+||.|.+||||+++..
T Consensus 74 ~megk~~~wGRNekGQLGhgD---~k~~e~Ptvi~gL~~~~iv~AA~G--rnHTl~ltdtG~v~afGeNK~GQlGlgn~~ 148 (443)
T KOG1427|consen 74 DMEGKCYTWGRNEKGQLGHGD---MKQRERPTVISGLSKHKIVKAAAG--RNHTLVLTDTGQVLAFGENKYGQLGLGNAK 148 (443)
T ss_pred ecccceeecccCccCccCccc---hhhccCCchhhhhhhhhHHHHhhc--cCcEEEEecCCcEEEecccccccccccccc
Confidence 458999999999999999995 344678999999998888889988 999999999999999999999999999876
Q ss_pred CCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCc------------ccCcCee--ee-cc
Q 015016 97 QRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNE------------IEPSPVR--CL-VS 161 (414)
Q Consensus 97 ~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~------------~~~~~~~--~~-~~ 161 (414)
..-.-+.++......|+.|+||..|++.|+..+.+..+|.-.+||||.++-... ..|+|-. .+ ..
T Consensus 149 ~~v~s~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgv 228 (443)
T KOG1427|consen 149 NEVESTPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGV 228 (443)
T ss_pred cccccCCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccccccce
Confidence 543333333334557999999999999999999999999999999998864221 1122211 11 12
Q ss_pred ceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeeccc--CCCcEEEEEccCC
Q 015016 162 EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAAL--AGETIVKVACGTN 239 (414)
Q Consensus 162 ~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~I~~g~~ 239 (414)
.|++++||.+|++++. +++ +||+||..-+|.||+.+-.. ...|.++..+ .+.--.++.||+.
T Consensus 229 qiv~~acg~nhtvavd-~nk-rVysWGFGGyGRLGHaEqKD--------------EmvpRlik~Fd~~~rg~~~~~~g~t 292 (443)
T KOG1427|consen 229 QIVKVACGTNHTVAVD-KNK-RVYSWGFGGYGRLGHAEQKD--------------EMVPRLIKVFDRNNRGPPNAILGYT 292 (443)
T ss_pred eeEEEeccCcceeeec-CCc-cEEEeccccccccccccchh--------------hHHHHHHHHhcCCCCCCcceeeecc
Confidence 4999999999999999 788 99999999999999977653 2334444332 2334557899999
Q ss_pred ceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCC------
Q 015016 240 HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLK------ 313 (414)
Q Consensus 240 ~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~------ 313 (414)
.++.+.+-|.+|.||.+... -.....|.++..++.-++ ..+-++..|. .+..|..+..||...
T Consensus 293 ~Sl~v~e~G~Lf~~g~~k~~------ge~~mypkP~~dlsgwnl----~~~~~~~~h~-~v~ad~s~i~wg~~~~g~~lg 361 (443)
T KOG1427|consen 293 GSLNVAEGGQLFMWGKIKNN------GEDWMYPKPMMDLSGWNL----RWMDSGSMHH-FVGADSSCISWGHAQYGELLG 361 (443)
T ss_pred cceeecccceeEEeeccccC------cccccCCCchhhcCCccC----CCcCccceee-eeccccccccccccccccccc
Confidence 99999999999999988632 233345666655555333 3667776654 456677889999853
Q ss_pred --CCCCceeeeeecccCCCCceEEEecCCceEEEEeC
Q 015016 314 --NNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGAD 348 (414)
Q Consensus 314 --~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~~ 348 (414)
+.+.....|..+..+.+..|-+|++|..|++++.|
T Consensus 362 gp~~Qkss~~Pk~v~~l~~i~v~~VamGysHs~vivd 398 (443)
T KOG1427|consen 362 GPNGQKSSAAPKKVDMLEGIHVMGVAMGYSHSMVIVD 398 (443)
T ss_pred CccccccccCccccchhcceeccceeeccceEEEEEc
Confidence 45566778999999999999999999999999874
No 5
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=2.2e-28 Score=234.68 Aligned_cols=308 Identities=19% Similarity=0.247 Sum_probs=226.9
Q ss_pred ceEEEeeCCccccccccCCCCCCCccCCeEeccCC--CCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCC
Q 015016 20 GELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLV--GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQ 97 (414)
Q Consensus 20 g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~--~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~ 97 (414)
.+||.||+|.+.-||.+. ......|.++..+. +.-+.+|+.+ ..|++++++.|+||++|.+..|+||.|+...
T Consensus 142 ndvy~wG~N~N~tLGign---~~~~~~Pe~Vdlf~~Sg~~~~qV~l~--kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~ 216 (1267)
T KOG0783|consen 142 NDVYGWGTNVNNTLGIGN---GKEPSSPERVDLFKTSGQLFSQVQLS--KFHSVFLTEKGQVYVCGHGAGGRLGFGDEQY 216 (1267)
T ss_pred cceeEecccccccccccC---CCCCCChHHhHHHHhccHHHHHHHHh--hceeeEecCCCcEEEeccCCCCccCcCcccc
Confidence 679999999999999997 44568898888774 4446778887 9999999999999999999999999998888
Q ss_pred CCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCC-CcccCcCeeeec----cceEEEEeCCCe
Q 015016 98 RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIR-NEIEPSPVRCLV----SEVTATACGADF 172 (414)
Q Consensus 98 ~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~-~~~~~~~~~~~~----~~i~~is~G~~~ 172 (414)
...|.+|+.+.+.+|.+|+....|+++||++|-||.||.|..+|||..... ....|..+.... ..|+-+++|..|
T Consensus 217 ~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~h 296 (1267)
T KOG0783|consen 217 NFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSH 296 (1267)
T ss_pred cccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccce
Confidence 899999999999999999999999999999999999999999999975432 222233332221 258999999999
Q ss_pred eEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEE
Q 015016 173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYT 252 (414)
Q Consensus 173 ~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~ 252 (414)
+++-+ +- .||+||.|. ||||+.+... ...+|..+.... ..|.-++|....+++++.++.+|+
T Consensus 297 sVawt--~~-~VY~wGlN~-GQlGi~~n~~-------------~Vt~Pr~l~~~~-~~v~~v~a~~~ATVc~~~~~~i~~ 358 (1267)
T KOG0783|consen 297 SVAWT--DT-DVYSWGLNN-GQLGISDNIS-------------VVTTPRRLAGLL-SPVIHVVATTRATVCLLQNNSIIA 358 (1267)
T ss_pred eeeee--cc-eEEEecccC-ceecCCCCCc-------------eeecchhhcccc-cceEEEEecCccEEEEecCCcEEE
Confidence 99999 44 899999986 9999887754 455665554433 478899999999999999999999
Q ss_pred eeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCC-CceeeeeecccCCCC
Q 015016 253 WGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG-DDWMYPKPLMDLSGW 331 (414)
Q Consensus 253 wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~-~~~~~p~~~~~~~~~ 331 (414)
+-+...-.+ ...........+..-........+++..+....-+++|+-|.||.|-++...- .=...|.++.
T Consensus 359 ~ady~~~k~--~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~~~~c~ftp~r~~----- 431 (1267)
T KOG0783|consen 359 FADYNQVKL--PFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNSTRTSCKFTPLRIF----- 431 (1267)
T ss_pred Eecccceec--CcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCceeeeecccceee-----
Confidence 865432211 11111112222221111111123345666677789999999999998654321 1122333333
Q ss_pred ceEEEecCCceEEEEe-CCCEEEecCCCCC
Q 015016 332 NLRCMDSGNMHHFVGA-DSSCISWGHAQYG 360 (414)
Q Consensus 332 ~i~~i~~g~~h~~~l~-~g~vy~wG~n~~g 360 (414)
.|++|+--.+..++++ || +|=++...
T Consensus 432 ~isdIa~~~N~~~~~t~dG---c~~Rg~~~ 458 (1267)
T KOG0783|consen 432 EISDIAWTANSLILCTRDG---CWKRGLRS 458 (1267)
T ss_pred ehhhhhhccceEEEEecCc---ceehhhhh
Confidence 3668888888888888 88 44444433
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.96 E-value=1.4e-28 Score=235.88 Aligned_cols=308 Identities=21% Similarity=0.346 Sum_probs=228.1
Q ss_pred EEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCC--CCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCC
Q 015016 71 VAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS--KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIR 148 (414)
Q Consensus 71 ~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~ 148 (414)
.+++.-.+||+||+|...-||.|+......|.+|..+. +.-+.+|+.+..|++++++.|+||+||.+.-|+||.+...
T Consensus 136 ~~~d~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq 215 (1267)
T KOG0783|consen 136 PVLDLPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ 215 (1267)
T ss_pred cccCCccceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc
Confidence 45566689999999999999999999999999998774 4557899999999999999999999999999999999888
Q ss_pred CcccCcCeeeec-cceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccC
Q 015016 149 NEIEPSPVRCLV-SEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALA 227 (414)
Q Consensus 149 ~~~~~~~~~~~~-~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (414)
....|..++.+. .++.+|+....|+++|| ..| .||+||.|.++|||.......-.. +.+-++.++....
T Consensus 216 ~~~iPkrV~gL~gh~~~qisvs~~HslvLT-~~g-~Vys~GlN~~hqLG~~~~~~~~~~--------p~qI~a~r~kg~~ 285 (1267)
T KOG0783|consen 216 YNFIPKRVPGLIGHKVIQISVSHTHSLVLT-KFG-SVYSWGLNGSHQLGLSNDELKKDD--------PIQITARRIKGFK 285 (1267)
T ss_pred ccccccccccccccceEEEEeecceeEEEe-ecc-eEEEeecCcccccCCcCchhhcCc--------hhhhhhHhhcchh
Confidence 878887788754 46999999999999999 899 999999999999999876542211 1222333333332
Q ss_pred CCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCC-ccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCE
Q 015016 228 GETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKD-EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQL 306 (414)
Q Consensus 228 ~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~-~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v 306 (414)
.|+.++||..|+++.+.. .||+||.|. ||||..+... +..|+.+... ..++..++|....+++++.++.+
T Consensus 286 --~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~-----~~~v~~v~a~~~ATVc~~~~~~i 356 (1267)
T KOG0783|consen 286 --QIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGL-----LSPVIHVVATTRATVCLLQNNSI 356 (1267)
T ss_pred --hhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhccc-----ccceEEEEecCccEEEEecCCcE
Confidence 689999999999999877 799999986 9999887643 4567655332 23556899999999999999999
Q ss_pred EEccCCCCC----CCceeeeeeccc----CCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCee
Q 015016 307 YMWGKLKNN----GDDWMYPKPLMD----LSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKK 377 (414)
Q Consensus 307 ~~wG~~~~~----~~~~~~p~~~~~----~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~ 377 (414)
|++-.-... .........+.. ..-..+++-.+...-.++++ -|+||.|-++.. ++ ..-.+.|..
T Consensus 357 ~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns-~~------~~c~ftp~r 429 (1267)
T KOG0783|consen 357 IAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNS-TR------TSCKFTPLR 429 (1267)
T ss_pred EEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCC-ce------eeeecccce
Confidence 998653210 000011111110 11123455556666677788 799999975442 10 122233333
Q ss_pred eccCCCceEEEEEecCCceEEEEccCcccccc
Q 015016 378 VDILEGMHVISVACGYGHSLVIVDRTNVGERL 409 (414)
Q Consensus 378 v~~~~~~~v~~v~~G~~~t~~l~~~g~v~~~~ 409 (414)
+ ..|.+|+--.+..++++.||..|+.+
T Consensus 430 ~-----~~isdIa~~~N~~~~~t~dGc~~Rg~ 456 (1267)
T KOG0783|consen 430 I-----FEISDIAWTANSLILCTRDGCWKRGL 456 (1267)
T ss_pred e-----eehhhhhhccceEEEEecCcceehhh
Confidence 3 24668888889999999999886543
No 7
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-23 Score=209.42 Aligned_cols=308 Identities=18% Similarity=0.225 Sum_probs=204.7
Q ss_pred eEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcC
Q 015016 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 58 i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n 137 (414)
-+++.++ +.+.++-+.+|+||..|... .+|+..... .+.++... .+|++|+.|-+..+++.--|.=|.+-..
T Consensus 481 tv~L~~~--RE~A~iqa~sGKvYYaGn~t--~~Gl~e~G~--nWmEL~l~--~~IVq~SVG~D~~~~~~~A~~G~I~~v~ 552 (3738)
T KOG1428|consen 481 TVDLHFT--REMAFIQARSGKVYYAGNGT--RFGLFETGN--NWMELCLP--EPIVQISVGIDTIMFRSGAGHGWIASVD 552 (3738)
T ss_pred heecccc--hhhhhhhhcCccEEEecCcc--EEeEEccCC--ceEEecCC--CceEEEEeccchhheeeccCcceEEecc
Confidence 3555666 88999999999999999654 455544443 34444432 4799999999988888765554444332
Q ss_pred CCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccC
Q 015016 138 KHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQ 217 (414)
Q Consensus 138 ~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~ 217 (414)
+.-..| .....++....+|+++ |+..|.+-..+++| ++|..|....- ..
T Consensus 553 D~k~~~-------~~Rr~~P~n~rKIv~v-~~s~~VY~~vSenG-kifM~G~~tm~----------------------~n 601 (3738)
T KOG1428|consen 553 DKKRNG-------RLRRLVPSNRRKIVHV-CASGHVYGYVSENG-KIFMGGLHTMR----------------------VN 601 (3738)
T ss_pred Cccccc-------chhhcCCCCcceeEEE-eeeeEEEEEEccCC-eEEeecceeEE----------------------ec
Confidence 222222 1223333334557766 45556665554899 99999977531 11
Q ss_pred CCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCC----------CCc
Q 015016 218 PRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVL----------PPE 287 (414)
Q Consensus 218 ~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~----------~~i 287 (414)
.....+..+.+.-|.+++.|..|.++++.+|+||.||-|..+|+|+-+........+...-....+. .+-
T Consensus 602 ~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~ 681 (3738)
T KOG1428|consen 602 VSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPS 681 (3738)
T ss_pred chHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcc
Confidence 2334566677778999999999999999999999999999999998654322111111100000000 011
Q ss_pred cEEEecCCce----EEE--eCCCCEEEccCCC----------C-----------------------CCCceeeeeeccc-
Q 015016 288 AVISAGSVNS----SCT--AGGGQLYMWGKLK----------N-----------------------NGDDWMYPKPLMD- 327 (414)
Q Consensus 288 ~~i~~g~~~s----~~l--~~~g~v~~wG~~~----------~-----------------------~~~~~~~p~~~~~- 327 (414)
+...||.-.. +.- .-.|.+..+|... . .+.....|.++..
T Consensus 682 VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~s 761 (3738)
T KOG1428|consen 682 VCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILS 761 (3738)
T ss_pred hhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeec
Confidence 1223332211 111 1245566555532 0 1111223444322
Q ss_pred --CCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCc
Q 015016 328 --LSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTN 404 (414)
Q Consensus 328 --~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~ 404 (414)
.-..++++++||..|+++|. |++||.+|+|.+||||.|+. .+...|++|..+.+..+++|++|++||+++..||.
T Consensus 762 q~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt--~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGs 839 (3738)
T KOG1428|consen 762 QGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDT--LSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGS 839 (3738)
T ss_pred cCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCcc--ccCCCcceEEcCCCCceEEEecCCCceEEEecCCc
Confidence 23457999999999999999 99999999999999999998 88899999999999999999999999999999999
Q ss_pred cc
Q 015016 405 VG 406 (414)
Q Consensus 405 v~ 406 (414)
|+
T Consensus 840 VF 841 (3738)
T KOG1428|consen 840 VF 841 (3738)
T ss_pred EE
Confidence 84
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.84 E-value=4e-19 Score=178.07 Aligned_cols=352 Identities=17% Similarity=0.163 Sum_probs=213.7
Q ss_pred CccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCC
Q 015016 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK 95 (414)
Q Consensus 16 ~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~ 95 (414)
+..+|+||.-| ++.++|+-...+ ....+.. ..+|++|++|-...|......+|-++.-|+..
T Consensus 494 qa~sGKvYYaG--n~t~~Gl~e~G~-----nWmEL~l--~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k--------- 555 (3738)
T KOG1428|consen 494 QARSGKVYYAG--NGTRFGLFETGN-----NWMELCL--PEPIVQISVGIDTIMFRSGAGHGWIASVDDKK--------- 555 (3738)
T ss_pred hhcCccEEEec--CccEEeEEccCC-----ceEEecC--CCceEEEEeccchhheeeccCcceEEeccCcc---------
Confidence 46789999999 557888765332 2233322 24899999995444544455556565555321
Q ss_pred CCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCeeE
Q 015016 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTV 174 (414)
Q Consensus 96 ~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~~ 174 (414)
...+.+++......+|+.+.....---++++||++|..|....- .......+..+.. -|.+++.|..|.+
T Consensus 556 -~~~~~Rr~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~--------~n~SSqmln~L~~~~isslAlGKsH~~ 626 (3738)
T KOG1428|consen 556 -RNGRLRRLVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR--------VNVSSQMLNGLDNVMISSLALGKSHGV 626 (3738)
T ss_pred -cccchhhcCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE--------ecchHHHhhccccceeehhhcccccee
Confidence 11222333333455788876655445688999999999854321 0011112222222 2999999999999
Q ss_pred EEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeec-ccCCCcEEEEEccCCceEEE------eCC
Q 015016 175 WLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA-ALAGETIVKVACGTNHTVAV------DSK 247 (414)
Q Consensus 175 ~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~I~~g~~~~~~l------t~~ 247 (414)
+++ .+| ++|+||.|+.+|+|.-++......+.-... -+.+..|.-.. -+.+..-+.-.||.-....+ .-.
T Consensus 627 av~-rNG-~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~-~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~ 703 (3738)
T KOG1428|consen 627 AVT-RNG-HLFTWGLNNMNQCGRVESTSTTSSPRHSGR-QEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPK 703 (3738)
T ss_pred EEE-eCC-eEEEEecCCcccccccccccccCCcccccc-eeecccCCccceeecCCcchhhhcccccccccccccCCCCC
Confidence 999 899 999999999999998655432221111100 01111111100 01112222233332222111 124
Q ss_pred CCEEEeeCCCCCCcCCCC--------C-------------------CCccceEEeeecccCCCCCCccEEEecCCceEEE
Q 015016 248 GYVYTWGFGGYGRLGHRE--------Q-------------------KDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCT 300 (414)
Q Consensus 248 G~vy~wG~n~~gqlg~~~--------~-------------------~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l 300 (414)
|.+..+|.++.+.+-.+- . .....|.++.. +..+..-++++|+||+.|++.|
T Consensus 704 G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~-sq~~Hdvkv~sVSCG~~HtVlL 782 (3738)
T KOG1428|consen 704 GTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVIL-SQGPHDVKVSSVSCGNFHTVLL 782 (3738)
T ss_pred CcccccCCCcccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheee-ccCCcceeEEEEeccCceEEEE
Confidence 667777777665432210 0 11122333322 2223333567899999999999
Q ss_pred eCCCCEEEccCCCCCC------CceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCC-C
Q 015016 301 AGGGQLYMWGKLKNNG------DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKS-S 372 (414)
Q Consensus 301 ~~~g~v~~wG~~~~~~------~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~-~ 372 (414)
.+|++||.+|.|...+ .....|+++..+++..|+++++|++|++++. ||+||.+|.-..|||+..-.+..- .
T Consensus 783 ~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WN 862 (3738)
T KOG1428|consen 783 ASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVILPSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWN 862 (3738)
T ss_pred ecCCcEEEecCCcccccCcCccccCCCcceEEcCCCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccc
Confidence 9999999999987422 3345799999999889999999999999988 999999999999999986552222 2
Q ss_pred CCCeeeccCC---CceEEEEEecCCceEE
Q 015016 373 AMPKKVDILE---GMHVISVACGYGHSLV 398 (414)
Q Consensus 373 ~~p~~v~~~~---~~~v~~v~~G~~~t~~ 398 (414)
..|.+++.+- +....-|.+.++.+++
T Consensus 863 A~Pe~v~~~G~~f~~~A~WIGAdGDss~i 891 (3738)
T KOG1428|consen 863 AIPEKVSGFGPGFNAFAGWIGADGDSSII 891 (3738)
T ss_pred cCCCcCCCCCccccccceeeccCCCccee
Confidence 3577776652 2345566666666554
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.35 E-value=8.8e-13 Score=87.45 Aligned_cols=50 Identities=42% Similarity=0.753 Sum_probs=47.0
Q ss_pred CCCEEEEeCCCCCCCc-CCCCCCCCCceeeccCCCCcEEEEeecCCeEEEE
Q 015016 76 EGRCYTWGRNERGQLG-HGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVV 125 (414)
Q Consensus 76 ~g~vy~wG~n~~gqlG-~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 125 (414)
||+||+||.|.+|||| .++......|++|+.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 7777888999999999999999999999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.32 E-value=1.1e-12 Score=86.90 Aligned_cols=50 Identities=42% Similarity=0.874 Sum_probs=46.0
Q ss_pred CCCEEEecCCCCCCcc-CCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEE
Q 015016 348 DSSCISWGHAQYGELG-YGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVI 399 (414)
Q Consensus 348 ~g~vy~wG~n~~gqlG-~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l 399 (414)
||+||+||+|++|||| .+.. .....|++++.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~--~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDN--KNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSS--SEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCC--CceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6899999999999999 5555 888999999999999999999999999987
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=6.1e-11 Score=68.17 Aligned_cols=30 Identities=50% Similarity=1.022 Sum_probs=26.0
Q ss_pred EEEEEccCCceEEEeCCCCEEEeeCCCCCC
Q 015016 231 IVKVACGTNHTVAVDSKGYVYTWGFGGYGR 260 (414)
Q Consensus 231 i~~I~~g~~~~~~lt~~G~vy~wG~n~~gq 260 (414)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999987
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.14 E-value=7.5e-11 Score=67.82 Aligned_cols=30 Identities=33% Similarity=0.538 Sum_probs=26.0
Q ss_pred EEEEeecCCeEEEEEcCCCEEEEEcCCCCC
Q 015016 112 IKKAGAGRSHTVVVTEDGNSLAFGWNKHGQ 141 (414)
Q Consensus 112 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gq 141 (414)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999987
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=5.8e-12 Score=123.61 Aligned_cols=145 Identities=30% Similarity=0.476 Sum_probs=120.9
Q ss_pred CCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEE
Q 015016 46 SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVV 125 (414)
Q Consensus 46 ~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l 125 (414)
.|+++..+....+.+++|| ..|+++++..|.+++||.|.+||+|.+....-..|.+++.+.+....+|++|..|++++
T Consensus 4 ~~~~~~~l~~k~~lq~~cG--n~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~l 81 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCG--NNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFAL 81 (850)
T ss_pred hhHHHHHHhhhhhhhhccc--cHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhh
Confidence 3555555665677778777 99999999999999999999999999955444459999999999999999999998877
Q ss_pred Ec-------CCCEEEEEcCCCCCCCCCCCCCcccCcCeeeec-cceEEEEeCCCeeEEEecccCCeEEEecCCCCC
Q 015016 126 TE-------DGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLV-SEVTATACGADFTVWLSSVEGASILNAGLPQYG 193 (414)
Q Consensus 126 t~-------~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~-~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~g 193 (414)
+. +|+++.+|....+|+|.....+...|..+.... ..++.|+||..|+......-| ++|.+|.+..|
T Consensus 82 S~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~-qsf~~~~~~sG 156 (850)
T KOG0941|consen 82 SSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLG-QSFSFGKGASG 156 (850)
T ss_pred hhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhc-ceeecccCCCC
Confidence 66 999999999999999997666665565555443 459999999999999886677 99999998876
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.7e-11 Score=119.02 Aligned_cols=145 Identities=29% Similarity=0.524 Sum_probs=115.5
Q ss_pred CceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCeeEEEec
Q 015016 100 RPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVWLSS 178 (414)
Q Consensus 100 ~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~~~l~~ 178 (414)
.|..+..+...+|.+++||.+|+++++..|++|+||.|.+||+|.+.......|.+++.... ...+|++|.+|++++..
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~ 83 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSS 83 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhh
Confidence 45555556677899999999999999999999999999999999885444444777766544 38889999999987761
Q ss_pred ------ccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEE-eCCCCEE
Q 015016 179 ------VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAV-DSKGYVY 251 (414)
Q Consensus 179 ------~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~l-t~~G~vy 251 (414)
+++ .++++|....||+|++...+ ...|..........+++|+||..|+++. ..-|++|
T Consensus 84 ~~~~lt~e~-~~fs~Ga~~~~q~~h~~~~~--------------~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qsf 148 (850)
T KOG0941|consen 84 HTVLLTDEG-KVFSFGAGSTGQLGHSLTEN--------------EVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQSF 148 (850)
T ss_pred chhhcchhc-cccccCCccccccccccccc--------------ccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhccee
Confidence 388 99999999999999955443 3345555555567899999999999885 4668999
Q ss_pred EeeCCCCC
Q 015016 252 TWGFGGYG 259 (414)
Q Consensus 252 ~wG~n~~g 259 (414)
.+|.+..|
T Consensus 149 ~~~~~~sG 156 (850)
T KOG0941|consen 149 SFGKGASG 156 (850)
T ss_pred ecccCCCC
Confidence 99998876
No 15
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=94.84 E-value=1.3 Score=48.96 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=65.1
Q ss_pred EecCCceEEEeCCCCEEEccCCCCCCCceeeeeec--ccCCCCceEEEecCCceE-EEEe-CCCEEEecCCCCCCccCCC
Q 015016 291 SAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPL--MDLSGWNLRCMDSGNMHH-FVGA-DSSCISWGHAQYGELGYGP 366 (414)
Q Consensus 291 ~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~--~~~~~~~i~~i~~g~~h~-~~l~-~g~vy~wG~n~~gqlG~g~ 366 (414)
..+.+..++|++.|++-..-.. .. |.++ ..+++ .|+++++-..|. +|++ +|++|..=.-..-+.-.++
T Consensus 710 vv~~~~fvald~qg~lt~h~k~-----g~--p~~l~~~gl~G-~ik~l~lD~~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~ 781 (1774)
T PF11725_consen 710 VVNDNKFVALDDQGDLTAHQKP-----GR--PVPLSRPGLSG-EIKDLALDEKQNLYALTSTGELFRLPKEAWQGNAEGD 781 (1774)
T ss_pred EEcCCceEEeccCCccccccCC-----CC--CccCCCCCCCc-chhheeeccccceeEecCCCceeecCHHHhhCcccCC
Confidence 3677889999999998876421 11 4444 34444 799999998866 5677 9999975332211111111
Q ss_pred CCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccC
Q 015016 367 YGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT 403 (414)
Q Consensus 367 ~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g 403 (414)
. ....+.|..++ .+.+|..+....+|...+..++
T Consensus 782 ~-~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 782 Q-MAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred c-cccCceeccCC--CCCchhhhhcCCCCceEEEecC
Confidence 1 13444444444 5668899999999998888555
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=94.74 E-value=2.5 Score=37.11 Aligned_cols=109 Identities=12% Similarity=0.184 Sum_probs=57.4
Q ss_pred EEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCC--ceEEEeCCCCEEEcc
Q 015016 233 KVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV--NSSCTAGGGQLYMWG 310 (414)
Q Consensus 233 ~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~--~s~~l~~~g~v~~wG 310 (414)
-+.-...+.+.-+.+|+|+.|--.+. .......|... ..+.++....+ .-++.++.|.+|+|-
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~------~c~~~liPe~~---------~~i~sl~v~~dgsml~a~nnkG~cyvW~ 195 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGEN------SCTHELIPEDD---------TSIQSLTVMPDGSMLAAANNKGNCYVWR 195 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCC------ccccccCCCCC---------cceeeEEEcCCCcEEEEecCCccEEEEE
Confidence 35555667777789999999954331 11222223222 13345555544 456778899999998
Q ss_pred CCCCCCCceeeeeecccCCCCceEEEe--cCCceEEEEe-CCCEEEecC
Q 015016 311 KLKNNGDDWMYPKPLMDLSGWNLRCMD--SGNMHHFVGA-DSSCISWGH 356 (414)
Q Consensus 311 ~~~~~~~~~~~p~~~~~~~~~~i~~i~--~g~~h~~~l~-~g~vy~wG~ 356 (414)
.-.........|..-...-+..|.++- -...|.+... |-.|+.|-.
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 765444444445433222222233222 2223333333 566777643
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=93.25 E-value=4.2 Score=45.21 Aligned_cols=71 Identities=8% Similarity=0.074 Sum_probs=47.0
Q ss_pred cccCCCCceEEEe-cCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeec--cCCCceEEEEEecCCce-EEE
Q 015016 325 LMDLSGWNLRCMD-SGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVD--ILEGMHVISVACGYGHS-LVI 399 (414)
Q Consensus 325 ~~~~~~~~i~~i~-~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~--~~~~~~v~~v~~G~~~t-~~l 399 (414)
+..+.+..|..++ .+.+++++++ .|++-..= ....|+.++ .+.+ .|.++++-..|. +++
T Consensus 697 l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~---------------k~g~p~~l~~~gl~G-~ik~l~lD~~~nL~Al 760 (1774)
T PF11725_consen 697 LEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ---------------KPGRPVPLSRPGLSG-EIKDLALDEKQNLYAL 760 (1774)
T ss_pred ccCCCcCcceeEEEEcCCceEEeccCCcccccc---------------CCCCCccCCCCCCCc-chhheeeccccceeEe
Confidence 3445566677666 5678888888 67766541 111244443 4443 899999999976 677
Q ss_pred EccCcccccccc
Q 015016 400 VDRTNVGERLDQ 411 (414)
Q Consensus 400 ~~~g~v~~~~~~ 411 (414)
+.+|++|..-++
T Consensus 761 t~~G~Lf~~~k~ 772 (1774)
T PF11725_consen 761 TSTGELFRLPKE 772 (1774)
T ss_pred cCCCceeecCHH
Confidence 799999876554
No 18
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=92.90 E-value=1.4 Score=43.21 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=70.3
Q ss_pred ecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCC-CeeEEEecccCCeEEEecCCCCCcc
Q 015016 117 AGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA-DFTVWLSSVEGASILNAGLPQYGQL 195 (414)
Q Consensus 117 ~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~-~~~~~l~~~~g~~v~~~G~n~~gql 195 (414)
.|.....+|..+|.+|.= -|.......-....+......+.+|++|- ....+++ .+|.-+|..|-....+.
T Consensus 190 ~g~~~awAI~s~Gd~y~R-------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt-~nG~vf~R~GVsRqNp~ 261 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR-------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVT-ENGAVFYREGVSRQNPE 261 (705)
T ss_pred CCceEEEEEecCCcEEEe-------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEe-eCCcEEEEecccccCCC
Confidence 455566788888888862 11111111111111111123688999999 5666788 89966778898887777
Q ss_pred cCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEe
Q 015016 196 GHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTW 253 (414)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~w 253 (414)
|..-. ...+|.... .++.|+.|.....+||++|++|.-
T Consensus 262 GdsWk---------------dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 262 GDSWK---------------DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred Cchhh---------------hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 65432 244555432 388999999999999999999863
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=87.27 E-value=33 Score=34.12 Aligned_cols=70 Identities=17% Similarity=0.118 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEE-EeCCCCCCCcCCCCCCCCCceeeccCCCCc-EEEEeecCCeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYT-WGRNERGQLGHGDKIQRDRPTIVSELSKYK-IKKAGAGRSHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~-wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~-i~~i~~G~~~~~~lt~~g~vy~~ 134 (414)
++.+|++|- -....+++.+|.||. -|-....+.|.. ...|+.+.+.. ++.|+.|....-+||++|+||.=
T Consensus 228 ~L~qISagP-tg~VwAvt~nG~vf~R~GVsRqNp~Gds-------WkdI~tP~~a~~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 228 DLSQISAGP-TGVVWAVTENGAVFYREGVSRQNPEGDS-------WKDIVTPRQALEPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred ccceEeecC-cceEEEEeeCCcEEEEecccccCCCCch-------hhhccCcccccceEEEEeccceEEEEecCCcEEEE
Confidence 688999994 267889999998874 454444443322 22333333333 99999999999999999999974
No 20
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.66 E-value=7.6 Score=34.90 Aligned_cols=134 Identities=20% Similarity=0.253 Sum_probs=75.9
Q ss_pred CccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCC-CceEEEEeCCCCEEEEeCC-CCCCCcCC
Q 015016 16 KEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCV-SCHCVAVDVEGRCYTWGRN-ERGQLGHG 93 (414)
Q Consensus 16 ~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~-~~~~~~lt~~g~vy~wG~n-~~gqlG~~ 93 (414)
+..||.||.-++. .+.+|+-. | -.+ +++.+..|.| .-|.+++..||..|.+-.. .-++++..
T Consensus 69 papdG~VWft~qg-~gaiGhLd---------P-----~tG-ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk 132 (353)
T COG4257 69 PAPDGAVWFTAQG-TGAIGHLD---------P-----ATG-EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPK 132 (353)
T ss_pred cCCCCceEEecCc-cccceecC---------C-----CCC-ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCc
Confidence 4778888876655 34455443 2 112 4555555543 5688899999999988654 33343332
Q ss_pred CCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcC-CCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCe
Q 015016 94 DKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWN-KHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF 172 (414)
Q Consensus 94 ~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n-~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~ 172 (414)
..+...-|.. .+-+-+.-.+.+++.+|+||..|.+ .+|+|..........+.|. -+.-.
T Consensus 133 t~evt~f~lp---------~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpy 192 (353)
T COG4257 133 TLEVTRFPLP---------LEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPY 192 (353)
T ss_pred ccceEEeecc---------cccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCc
Confidence 2222111111 2233455678899999999999963 4555544333222233331 12224
Q ss_pred eEEEecccCCeEEEe
Q 015016 173 TVWLSSVEGASILNA 187 (414)
Q Consensus 173 ~~~l~~~~g~~v~~~ 187 (414)
-++.+ .+| .||.-
T Consensus 193 Gi~at-pdG-svwya 205 (353)
T COG4257 193 GICAT-PDG-SVWYA 205 (353)
T ss_pred ceEEC-CCC-cEEEE
Confidence 56667 788 88875
No 21
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.60 E-value=2.2 Score=37.46 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=43.8
Q ss_pred CccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecc-c---------CCCCceEEEecCCceEEEEe--CCCEEE
Q 015016 286 PEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLM-D---------LSGWNLRCMDSGNMHHFVGA--DSSCIS 353 (414)
Q Consensus 286 ~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~-~---------~~~~~i~~i~~g~~h~~~l~--~g~vy~ 353 (414)
+++.+.+...+-+++|++|.+|+|--... +....|..+. . .....|+.+....+-.-+++ ||+.|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~--k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKG--KAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCC--eeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 34578889999999999999999964331 1122221111 1 23346777776655444433 898888
Q ss_pred ecCC
Q 015016 354 WGHA 357 (414)
Q Consensus 354 wG~n 357 (414)
|=.+
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8544
No 22
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.13 E-value=4.4 Score=35.56 Aligned_cols=79 Identities=13% Similarity=0.095 Sum_probs=45.2
Q ss_pred CCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCC-CCCCcccCcC--eeeeccceEEEEeCCCeeEEEecccCCeEE
Q 015016 109 KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSG-SIRNEIEPSP--VRCLVSEVTATACGADFTVWLSSVEGASIL 185 (414)
Q Consensus 109 ~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~-~~~~~~~~~~--~~~~~~~i~~is~G~~~~~~l~~~~g~~v~ 185 (414)
+.+++.+.|-..+-++||++|.+|+|--...-..-.+ +..+.....+ -......|+.+.-..+-.-+++-.+| ..|
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng-~~y 90 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNG-DSY 90 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCC-CEE
Confidence 3478889999999999999999999975443222111 0000000000 00122346666655555555444677 788
Q ss_pred Eec
Q 015016 186 NAG 188 (414)
Q Consensus 186 ~~G 188 (414)
+|=
T Consensus 91 ~y~ 93 (219)
T PF07569_consen 91 SYS 93 (219)
T ss_pred Eec
Confidence 873
No 23
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=0.16 Score=53.55 Aligned_cols=129 Identities=15% Similarity=0.155 Sum_probs=82.2
Q ss_pred CCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCC--CCccceEEee-ecccCCCCCCccEEEecCCceEEEeCC
Q 015016 227 AGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQ--KDEWVPRRVD-VFQRNNVLPPEAVISAGSVNSSCTAGG 303 (414)
Q Consensus 227 ~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~--~~~~~p~~i~-~~~~~~~~~~i~~i~~g~~~s~~l~~~ 303 (414)
...+++.|.+-....++|..+|++|.|-|.+.--+...-. .+...|.--. .+.. ++|+.+++.+-..-++|++
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hg----e~ii~lSanniR~si~T~n 447 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHG----EKIILLSANNIRASIATEN 447 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccC----CeeEEeecCceeeeeeecC
Confidence 3468899999999999999999999999988665554222 2233333221 1222 2455788888888999999
Q ss_pred CCEEEccCCCCCCCceeee---eecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCC
Q 015016 304 GQLYMWGKLKNNGDDWMYP---KPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQY 359 (414)
Q Consensus 304 g~v~~wG~~~~~~~~~~~p---~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~ 359 (414)
|.|-.|=.....+...... +.-....+..+++-.|-..|.++.. |+-+|=||---.
T Consensus 448 ghlasWlDEcgagV~fkLa~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 448 GHLASWLDECGAGVAFKLAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred CchhhHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9999996543222111111 1112233444555566667776655 899999996543
No 24
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=83.33 E-value=34 Score=30.70 Aligned_cols=21 Identities=10% Similarity=0.072 Sum_probs=16.2
Q ss_pred cCCceEEEEeCCCEEEecCCC
Q 015016 338 SGNMHHFVGADSSCISWGHAQ 358 (414)
Q Consensus 338 ~g~~h~~~l~~g~vy~wG~n~ 358 (414)
+-..|+.++..+++|.+|--+
T Consensus 292 aRRRqC~~v~g~kv~LFGGTs 312 (392)
T KOG4693|consen 292 ARRRQCSVVSGGKVYLFGGTS 312 (392)
T ss_pred cccceeEEEECCEEEEecCCC
Confidence 334788888899999999543
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=0.31 Score=51.53 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=83.7
Q ss_pred CCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCee----eeccceEEEEeCCCeeEEEecccCCeE
Q 015016 109 KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVR----CLVSEVTATACGADFTVWLSSVEGASI 184 (414)
Q Consensus 109 ~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~----~~~~~i~~is~G~~~~~~l~~~~g~~v 184 (414)
..+++.|.+-....++|..+|++|.|-+...--+-.+-..+.....|.. ....+|+.+++..-...+++ .+| ++
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T-~ng-hl 450 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIAT-ENG-HL 450 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeee-cCC-ch
Confidence 3467777777778889999999999998776544443222222222221 12346999999988888899 888 99
Q ss_pred EEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCC
Q 015016 185 LNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGY 258 (414)
Q Consensus 185 ~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~ 258 (414)
.+|=+.. |.+-... .......-....++.+++..|...|.++...+.-+|.||---+
T Consensus 451 asWlDEc----gagV~fk-------------La~ea~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf 507 (3015)
T KOG0943|consen 451 ASWLDEC----GAGVAFK-------------LAHEAQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPF 507 (3015)
T ss_pred hhHHhhh----hhhhhhh-------------hhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeee
Confidence 9995432 2221111 1111111112234567788888999999889989999996443
No 26
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=73.31 E-value=8 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.9
Q ss_pred CcEEEEeecC-CeEEEEEcCCCEEEE
Q 015016 110 YKIKKAGAGR-SHTVVVTEDGNSLAF 134 (414)
Q Consensus 110 ~~i~~i~~G~-~~~~~lt~~g~vy~~ 134 (414)
..+++|++|. ....+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3699999999 888999999999963
No 27
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=69.61 E-value=1.1e+02 Score=29.61 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCC--CCcEEEEeecC--CeEEEEEcCCCEEEEEcCCCCCCC
Q 015016 68 CHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS--KYKIKKAGAGR--SHTVVVTEDGNSLAFGWNKHGQLG 143 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~--~~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlg 143 (414)
++-++=|..|++|.|=-+. |.| +..+. ...|..|.... .|.+--.+||.|.+|-.-+--+
T Consensus 94 ~~l~ag~i~g~lYlWelss-G~L-------------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~-- 157 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSS-GIL-------------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS-- 157 (476)
T ss_pred eEEEeecccCcEEEEEecc-ccH-------------HHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc--
Confidence 4555556789999998665 222 11110 11344444444 4444445789999996432211
Q ss_pred CCCCCCcccCcCeeeeccc---eEEEEeCCC
Q 015016 144 SGSIRNEIEPSPVRCLVSE---VTATACGAD 171 (414)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~---i~~is~G~~ 171 (414)
..+...+.|...+... |+++.+|..
T Consensus 158 ---a~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 158 ---ADNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred ---cccCCCccceeeeccCcceeEEEEecCC
Confidence 1122255555555443 777766665
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=69.23 E-value=84 Score=28.01 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=75.3
Q ss_pred EEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCC----CCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCC
Q 015016 70 CVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS----KYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSG 145 (414)
Q Consensus 70 ~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~ 145 (414)
.+-||.|++..+.+.|.+=+|-.-+. ..|.++..+. ++..+...|-+...+-=.+||.+-+|.... +...
T Consensus 45 rLeiTpdk~~LAaa~~qhvRlyD~~S---~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~---~~~q 118 (311)
T KOG0315|consen 45 RLEITPDKKDLAAAGNQHVRLYDLNS---NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS---LSCQ 118 (311)
T ss_pred eEEEcCCcchhhhccCCeeEEEEccC---CCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC---cccc
Confidence 35567777777777666555432211 2343333332 334455556556666667899999998543 1111
Q ss_pred CCCCcccCcCeeeeccceEEEEeCCCee-EEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeec
Q 015016 146 SIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIA 224 (414)
Q Consensus 146 ~~~~~~~~~~~~~~~~~i~~is~G~~~~-~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (414)
. ....+.|+ ..|.---+.+ ++..+.+| .|+.|-..+. . +...+.|..
T Consensus 119 R--~~~~~spV-------n~vvlhpnQteLis~dqsg-~irvWDl~~~------~--------------c~~~liPe~-- 166 (311)
T KOG0315|consen 119 R--NYQHNSPV-------NTVVLHPNQTELISGDQSG-NIRVWDLGEN------S--------------CTHELIPED-- 166 (311)
T ss_pred h--hccCCCCc-------ceEEecCCcceEEeecCCC-cEEEEEccCC------c--------------cccccCCCC--
Confidence 1 11111222 2222222222 22233667 9999954432 0 112233332
Q ss_pred ccCCCcEEEEEccCC--ceEEEeCCCCEEEeeCC
Q 015016 225 ALAGETIVKVACGTN--HTVAVDSKGYVYTWGFG 256 (414)
Q Consensus 225 ~~~~~~i~~I~~g~~--~~~~lt~~G~vy~wG~n 256 (414)
+..|.+++.... -.++.++.|+.|+|-.-
T Consensus 167 ---~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 167 ---DTSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred ---CcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 245777766655 44567899999999653
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=63.06 E-value=1.5e+02 Score=28.55 Aligned_cols=108 Identities=17% Similarity=0.285 Sum_probs=56.4
Q ss_pred CcEEEEEccCCceEEEe--CCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCC-CccEEEecCCceEEE--eCC
Q 015016 229 ETIVKVACGTNHTVAVD--SKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLP-PEAVISAGSVNSSCT--AGG 303 (414)
Q Consensus 229 ~~i~~I~~g~~~~~~lt--~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~-~i~~i~~g~~~s~~l--~~~ 303 (414)
.+|++++-..+.-++|. .+.++.-|-.-+ +..+........-. .|.+.++|.+-.++. .+|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e--------------~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEE--------------NKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecch--------------hhHHHHhhcccccceEEEeccCCCCcceEEecCCC
Confidence 46777666655555543 566788884322 11111111111000 133556666655555 578
Q ss_pred CCEEEccCCCCCCCceeeeeecccCCC----CceEEEecCCceEEEEe--CCCEEEecCCC
Q 015016 304 GQLYMWGKLKNNGDDWMYPKPLMDLSG----WNLRCMDSGNMHHFVGA--DSSCISWGHAQ 358 (414)
Q Consensus 304 g~v~~wG~~~~~~~~~~~p~~~~~~~~----~~i~~i~~g~~h~~~l~--~g~vy~wG~n~ 358 (414)
++||.|-.... .++..+++ .+++.-.--.-+.+|-. ||+|=.||...
T Consensus 462 ~kvyIWhr~sg--------kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 462 SKVYIWHRISG--------KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceEEEEEccCC--------ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999976321 12222222 12333334455666655 89999998654
No 30
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.61 E-value=26 Score=19.31 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.2
Q ss_pred CcEEEEEccCCceEEEeCCCCEEE
Q 015016 229 ETIVKVACGTNHTVAVDSKGYVYT 252 (414)
Q Consensus 229 ~~i~~I~~g~~~~~~lt~~G~vy~ 252 (414)
+.|+.|++|.....+.|+.+-|-.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRi 25 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRI 25 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEe
Confidence 579999999999999998876543
No 31
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=58.88 E-value=2.1e+02 Score=29.28 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=29.7
Q ss_pred ccCceEEEeeCCcc-ccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCC
Q 015016 17 EKGGELLFCGSTCW-DAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 17 ~~~g~v~~~G~n~~-g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~ 86 (414)
+..+.+|+.|--.. ++......-..+.......+..++.. ..+..+..-+|.||+.|--+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~----------r~~~~~~~~~~~lYv~GG~~ 342 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP----------RCRVGVAVLNGKLYVVGGYD 342 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc----------cccccEEEECCEEEEEcccc
Confidence 56688999985543 23332221112222234444444422 22333444566999999544
No 32
>PHA02790 Kelch-like protein; Provisional
Probab=58.67 E-value=88 Score=31.12 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=26.1
Q ss_pred EEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEe---c-CCceEEEEeCCCEEEecCC
Q 015016 299 CTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMD---S-GNMHHFVGADSSCISWGHA 357 (414)
Q Consensus 299 ~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~---~-g~~h~~~l~~g~vy~wG~n 357 (414)
+..-+|.+|+.|... ..+-| .......++ . -..+.++..+|++|+.|--
T Consensus 403 ~~~~~~~IYv~GG~~----e~ydp------~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 403 ALVFGRRLFLVGRNA----EFYCE------SSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF 455 (480)
T ss_pred EEEECCEEEEECCce----EEecC------CCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence 345678999998421 11212 111222222 1 1234555569999999953
No 33
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=56.07 E-value=46 Score=30.77 Aligned_cols=55 Identities=15% Similarity=0.142 Sum_probs=41.4
Q ss_pred cCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEe
Q 015016 18 KGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWG 83 (414)
Q Consensus 18 ~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG 83 (414)
+.|+||+|---.. +....++......+..|++.++.-....-++++.++.||.|-
T Consensus 327 q~g~v~vwdL~~~-----------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 327 QSGKVYVWDLDNN-----------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CCCcEEEEECCCC-----------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 4678999975422 223566666677788999999986677888889999999985
No 34
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=55.71 E-value=15 Score=21.97 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.8
Q ss_pred ceEEEEeCCCCEEEEeCCC
Q 015016 68 CHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~n~ 86 (414)
-+.++++.+|++|+.|...
T Consensus 15 ~~~IavD~~GNiYv~G~T~ 33 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYTN 33 (38)
T ss_pred EEEEEECCCCCEEEEEeec
Confidence 3678999999999999643
No 35
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.00 E-value=2.4e+02 Score=31.51 Aligned_cols=59 Identities=17% Similarity=0.304 Sum_probs=36.4
Q ss_pred EEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec-----CCeEEEEEcCCCEEEEEc
Q 015016 71 VAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG-----RSHTVVVTEDGNSLAFGW 136 (414)
Q Consensus 71 ~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~~~~lt~~g~vy~~G~ 136 (414)
+.+|.|.+||.|--+..+++..-+...... . .+..++...| =.|.+++..--+|+..|-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtI-l------~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV 156 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTI-L------KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGV 156 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhh-e------eeeeecCCCCcchhhhheeEEecccceEEEEEE
Confidence 567999999999988866654433222110 0 1111222222 258899999999999984
No 36
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=52.74 E-value=33 Score=30.75 Aligned_cols=109 Identities=21% Similarity=0.357 Sum_probs=50.8
Q ss_pred CCceEEEeCCCCEEEee-CCC-CCCcCCCC----CCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccC
Q 015016 238 TNHTVAVDSKGYVYTWG-FGG-YGRLGHRE----QKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGK 311 (414)
Q Consensus 238 ~~~~~~lt~~G~vy~wG-~n~-~gqlg~~~----~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~ 311 (414)
+.|+++.- ++++|.|| .|+ +|.|..-- ........+|+.+. --+-..|++++- .+++|++|-
T Consensus 80 YGHtvV~y-~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~v----------PgaRDGHsAcV~-gn~MyiFGG 147 (392)
T KOG4693|consen 80 YGHTVVEY-QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFV----------PGARDGHSACVW-GNQMYIFGG 147 (392)
T ss_pred cCceEEEE-cceEEEEcCccCcccccceeeeeccccccccccceeeec----------CCccCCceeeEE-CcEEEEecC
Confidence 56887774 45899997 454 45444321 12222222222211 023345666554 568899886
Q ss_pred CCCCCCceeeeeecccCCCCceEEEe-------cCCceEEEEeCCCEEEecCCC
Q 015016 312 LKNNGDDWMYPKPLMDLSGWNLRCMD-------SGNMHHFVGADSSCISWGHAQ 358 (414)
Q Consensus 312 ~~~~~~~~~~p~~~~~~~~~~i~~i~-------~g~~h~~~l~~g~vy~wG~n~ 358 (414)
-....+..........+.-....-|. --+.|++..-++.+|.+|-..
T Consensus 148 ye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~ 201 (392)
T KOG4693|consen 148 YEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRS 201 (392)
T ss_pred hHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEecccc
Confidence 44222111111111111111111111 112466555589999998543
No 37
>PHA03098 kelch-like protein; Provisional
Probab=50.86 E-value=2.7e+02 Score=27.94 Aligned_cols=18 Identities=6% Similarity=-0.068 Sum_probs=12.7
Q ss_pred ceEEEEeCCCEEEecCCC
Q 015016 341 MHHFVGADSSCISWGHAQ 358 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~n~ 358 (414)
.|.++..++++|++|-..
T Consensus 480 ~~~~~~~~~~iyv~GG~~ 497 (534)
T PHA03098 480 NASLCIFNNKIYVVGGDK 497 (534)
T ss_pred cceEEEECCEEEEEcCCc
Confidence 455555599999999543
No 38
>PHA03098 kelch-like protein; Provisional
Probab=49.63 E-value=1.5e+02 Score=29.81 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=12.0
Q ss_pred CeeEEEecccCCeEEEecCCC
Q 015016 171 DFTVWLSSVEGASILNAGLPQ 191 (414)
Q Consensus 171 ~~~~~l~~~~g~~v~~~G~n~ 191 (414)
.++++.. ++ +||.+|-..
T Consensus 480 ~~~~~~~--~~-~iyv~GG~~ 497 (534)
T PHA03098 480 NASLCIF--NN-KIYVVGGDK 497 (534)
T ss_pred cceEEEE--CC-EEEEEcCCc
Confidence 3455555 67 999998543
No 39
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=49.03 E-value=2.1e+02 Score=26.10 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=56.9
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec---CCeEEEEEcCCCEEEEEcC-CCCCC
Q 015016 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGNSLAFGWN-KHGQL 142 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~vy~~G~n-~~gql 142 (414)
.-|-++...||.||.-+... |.+|+-+. . .-+++.+..| .-|.+++..||..|.+-.. ..+++
T Consensus 63 ap~dvapapdG~VWft~qg~-gaiGhLdP--~----------tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~ 129 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGT-GAIGHLDP--A----------TGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRL 129 (353)
T ss_pred CccccccCCCCceEEecCcc-ccceecCC--C----------CCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEe
Confidence 46888889999999866443 33333211 1 1134444444 3488899999999998654 33334
Q ss_pred CCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCC
Q 015016 143 GSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n 190 (414)
+.........+.|. +.+-+.-.+.++. ..| .||--|.+
T Consensus 130 dpkt~evt~f~lp~--------~~a~~nlet~vfD-~~G-~lWFt~q~ 167 (353)
T COG4257 130 DPKTLEVTRFPLPL--------EHADANLETAVFD-PWG-NLWFTGQI 167 (353)
T ss_pred cCcccceEEeeccc--------ccCCCcccceeeC-CCc-cEEEeecc
Confidence 33222222222222 2222333456666 788 99988764
No 40
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=47.43 E-value=43 Score=23.95 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=29.4
Q ss_pred CCceeeccCCCCcEEEEeec-CCeEEEEEcCCCEEEEEcCCCCCC
Q 015016 99 DRPTIVSELSKYKIKKAGAG-RSHTVVVTEDGNSLAFGWNKHGQL 142 (414)
Q Consensus 99 ~~p~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~vy~~G~n~~gql 142 (414)
..|..+.. +..-..|+|. ....++|++||.+|.-+--+.|.+
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 34566654 4567899999 899999999999999986556653
No 41
>PHA02713 hypothetical protein; Provisional
Probab=45.43 E-value=63 Score=32.87 Aligned_cols=15 Identities=13% Similarity=0.280 Sum_probs=10.8
Q ss_pred EEEeCCCCEEEEeCC
Q 015016 71 VAVDVEGRCYTWGRN 85 (414)
Q Consensus 71 ~~lt~~g~vy~wG~n 85 (414)
.+..-+|+||++|..
T Consensus 346 ~~~~~~g~IYviGG~ 360 (557)
T PHA02713 346 SLAVIDDTIYAIGGQ 360 (557)
T ss_pred eEEEECCEEEEECCc
Confidence 344557899999964
No 42
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=45.14 E-value=39 Score=18.47 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=14.1
Q ss_pred eEEEEEcCCCEEEEEcCC
Q 015016 121 HTVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 121 ~~~~lt~~g~vy~~G~n~ 138 (414)
+.++++.+|+||+.-.+.
T Consensus 5 ~gvav~~~g~i~VaD~~n 22 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGN 22 (28)
T ss_dssp EEEEEETTSEEEEEECCC
T ss_pred cEEEEeCCCCEEEEECCC
Confidence 567888999999987543
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=45.13 E-value=2e+02 Score=24.73 Aligned_cols=69 Identities=9% Similarity=0.049 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCC-eEEEEEc-CCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS-HTVVVTE-DGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~~~~lt~-~g~vy~~ 134 (414)
.+..+..-....+.++...+|.|+.|-..... ....+.. ....|..+..... ..++... +|.|+.|
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 120 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGE-----------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVW 120 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCccc-----------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEE
Confidence 34344443222355555668889888754321 1112221 1224555555443 3344444 8889998
Q ss_pred EcC
Q 015016 135 GWN 137 (414)
Q Consensus 135 G~n 137 (414)
-..
T Consensus 121 ~~~ 123 (289)
T cd00200 121 DVE 123 (289)
T ss_pred ECC
Confidence 754
No 44
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=44.40 E-value=2.9e+02 Score=26.38 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=37.7
Q ss_pred eEEEEeCCC-eeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCC-c
Q 015016 163 VTATACGAD-FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN-H 240 (414)
Q Consensus 163 i~~is~G~~-~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~-~ 240 (414)
+..|..|.. |.....+.||+.+|..+.. |.+ ..+.......+..|..|.. +
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~v-------------------------sviD~~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRD--GTV-------------------------SVIDLATGKVVATIKVGGNPR 81 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETT--SEE-------------------------EEEETTSSSEEEEEE-SSEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCC--CeE-------------------------EEEECCcccEEEEEecCCCcc
Confidence 566666554 4444333778679988532 322 1222233345667777755 6
Q ss_pred eEEEeCCCCEEEeeCCCCCCcC
Q 015016 241 TVAVDSKGYVYTWGFGGYGRLG 262 (414)
Q Consensus 241 ~~~lt~~G~vy~wG~n~~gqlg 262 (414)
.++++.+|+...-++...+++-
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEE
T ss_pred eEEEcCCCCEEEEEecCCCcee
Confidence 7888999986655544444443
No 45
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=44.19 E-value=3.2e+02 Score=26.71 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=34.1
Q ss_pred cEEEEeecC--CeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEe-cccCCeEEEe
Q 015016 111 KIKKAGAGR--SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLS-SVEGASILNA 187 (414)
Q Consensus 111 ~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~-~~~g~~v~~~ 187 (414)
.+..++.-. .+-++=+..|++|.|=.+.- .|- ......-..|+.+....+-+++++ .+|| .|.+|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL----------~v~~aHYQ~ITcL~fs~dgs~iiTgskDg-~V~vW 150 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSG-ILL----------NVLSAHYQSITCLKFSDDGSHIITGSKDG-AVLVW 150 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccc-cHH----------HHHHhhccceeEEEEeCCCcEEEecCCCc-cEEEE
Confidence 344554433 23333347899999965321 110 000111123666666666666666 3566 88888
Q ss_pred c
Q 015016 188 G 188 (414)
Q Consensus 188 G 188 (414)
=
T Consensus 151 ~ 151 (476)
T KOG0646|consen 151 L 151 (476)
T ss_pred E
Confidence 4
No 46
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=43.79 E-value=1.9e+02 Score=26.77 Aligned_cols=16 Identities=6% Similarity=-0.006 Sum_probs=11.3
Q ss_pred eEEEEeCCCEEEecCC
Q 015016 342 HHFVGADSSCISWGHA 357 (414)
Q Consensus 342 h~~~l~~g~vy~wG~n 357 (414)
+.++..++++|+.|-.
T Consensus 297 ~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 297 AALLLTGNNIFSINGE 312 (323)
T ss_pred hheEEECCEEEEEecc
Confidence 4455558999999854
No 47
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.65 E-value=5.2e+02 Score=29.06 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=78.9
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCC-CCCCCcCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRN-ERGQLGHGDK 95 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n-~~gqlG~~~~ 95 (414)
+-|.++|.|=.++.+.+---.+-. .....-..+.+-+++- +.. -.|.+++.+--+|+..|-- +..+.+....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~s-htIl~V~LvkPkpgvF---v~~---IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLS-HTILKVGLVKPKPGVF---VPE---IQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchh-hhheeeeeecCCCCcc---hhh---hheeEEecccceEEEEEEEeccccCccccc
Confidence 568889999999866655433111 0111111112222322 221 3588999999999999932 1222222111
Q ss_pred CCCCCceeeccCCCCcEEEEeecCCeEEEEE-cCCCEEEE----EcCCCCC------CCCCCCCCcccCcCeeee---cc
Q 015016 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVT-EDGNSLAF----GWNKHGQ------LGSGSIRNEIEPSPVRCL---VS 161 (414)
Q Consensus 96 ~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt-~~g~vy~~----G~n~~gq------lg~~~~~~~~~~~~~~~~---~~ 161 (414)
... -.|. .++..|..|.+-++--+|++ .||.||=. +.+.+++ ++.+. .....|.....+ .+
T Consensus 169 ~~~---~~i~-~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~-ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 169 NTS---FKIS-VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSV-LSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred ccc---eeee-cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhH-HHHhhhhhhcCCCCCCC
Confidence 111 1111 23455666654444444444 55554422 2222222 11110 111223322222 34
Q ss_pred ceEEEEeCCCeeEEEec-ccCCeEEEecCCCCCccc
Q 015016 162 EVTATACGADFTVWLSS-VEGASILNAGLPQYGQLG 196 (414)
Q Consensus 162 ~i~~is~G~~~~~~l~~-~~g~~v~~~G~n~~gqlG 196 (414)
.|.+|+-+....+..+. +.| .|-+|-....|+-+
T Consensus 244 pI~qi~ID~SR~IlY~lsek~-~v~~Y~i~~~G~~~ 278 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKG-TVSAYDIGGNGLGG 278 (1311)
T ss_pred cceeeEeccccceeeeeccCc-eEEEEEccCCCccc
Confidence 58898888877665442 556 77777555555444
No 48
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=43.34 E-value=4.1e+02 Score=27.78 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=61.9
Q ss_pred EeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCc
Q 015016 115 AGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQ 194 (414)
Q Consensus 115 i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gq 194 (414)
++.|..|-|++ +||.|-.|..+. -.....+|..++...+.+++++ .-+.+|--|-...
T Consensus 138 vSVGsQHDMIV----nv~dWr~N~~~a--------------snkiss~Vsav~fsEdgSYfvT-~gnrHvk~wyl~~--- 195 (1080)
T KOG1408|consen 138 VSVGSQHDMIV----NVNDWRVNSSGA--------------SNKISSVVSAVAFSEDGSYFVT-SGNRHVKLWYLQI--- 195 (1080)
T ss_pred EeeccccceEE----Ehhhhhhccccc--------------ccccceeEEEEEEccCCceeee-eeeeeEEEEEeec---
Confidence 34566777777 467776654421 0112345888888889999998 4443555553221
Q ss_pred ccCCCCCCCcccCcccccccccCCCcee---ecccCCCcEEEEEccCC----ceEEEeCCCCEEEee
Q 015016 195 LGHGTDNEYNTKDSSVKLAYEAQPRPRA---IAALAGETIVKVACGTN----HTVAVDSKGYVYTWG 254 (414)
Q Consensus 195 lG~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~I~~g~~----~~~~lt~~G~vy~wG 254 (414)
+. ++. .+.|.|-+ +..+....+..++||.. .+++||..|.+.-+-
T Consensus 196 -~~----Kyk----------dpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 196 -QS----KYK----------DPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred -cc----ccc----------CCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeec
Confidence 10 100 01222221 23345567889999988 999999999998764
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=41.89 E-value=26 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=13.9
Q ss_pred ceEEEEeCCCEEEecCC
Q 015016 341 MHHFVGADSSCISWGHA 357 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~n 357 (414)
.|+++.-++++|+||--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 57777779999999955
No 50
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=37.85 E-value=5.4e+02 Score=27.60 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=37.6
Q ss_pred ecCCeEEEEEcCCC-EEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccC-CeEEEecCCC
Q 015016 117 AGRSHTVVVTEDGN-SLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEG-ASILNAGLPQ 191 (414)
Q Consensus 117 ~G~~~~~~lt~~g~-vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g-~~v~~~G~n~ 191 (414)
.++...++++.+|+ |++||.+..-..-..- .....|..+......|..|+|-..|.+.-+ .++ -.+|.++...
T Consensus 13 t~G~t~i~~d~~gefi~tcgsdg~ir~~~~~-sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s-~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFICTCGSDGDIRKWKTN-SDEEEPETIDISGELVSSIACYSNHFLTGS-EQNTVLRYKFPSGE 87 (933)
T ss_pred cCceEEEEEcCCCCEEEEecCCCceEEeecC-CcccCCchhhccCceeEEEeecccceEEee-ccceEEEeeCCCCC
Confidence 34455666777766 5556654332211110 111334444434455888888888776666 444 2355555443
No 51
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=36.41 E-value=5.5e+02 Score=27.25 Aligned_cols=136 Identities=13% Similarity=0.097 Sum_probs=73.8
Q ss_pred eccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCcee--eccCCCCcEEEEeecCC--eEEEE
Q 015016 50 LRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTI--VSELSKYKIKKAGAGRS--HTVVV 125 (414)
Q Consensus 50 i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~--v~~~~~~~i~~i~~G~~--~~~~l 125 (414)
+..-.+..++.+..+....+.+++|++|++|.+-.+.- ..|. ..-.|.. ++...+..|+.+.+... +.+++
T Consensus 519 ikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eI-P~GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLla 593 (735)
T TIGR01062 519 LKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNL-PSAR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMA 593 (735)
T ss_pred cCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhc-CcCc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEE
Confidence 33334556777776666778999999999999976543 1122 1223322 33345677888777644 47888
Q ss_pred EcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceE--EEEeCCC-eeEEEecccCCeEEEecCCCCCcccC
Q 015016 126 TEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVT--ATACGAD-FTVWLSSVEGASILNAGLPQYGQLGH 197 (414)
Q Consensus 126 t~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~--~is~G~~-~~~~l~~~~g~~v~~~G~n~~gqlG~ 197 (414)
|+.|..+..-..++-....+....... + ....+. ....+.+ +.++++ ++| ++..+-.++.-.++.
T Consensus 594 T~~GyGKrt~lse~~~~~RaGKgvi~L----k-~~d~lv~v~~v~~~dd~V~liT-~~G-rlLrf~v~EIp~~gR 661 (735)
T TIGR01062 594 SDAGYGFLCNFNDLIARNKAGKALINL----P-ENASVIAPLPVNGDSDMIAAIT-EAG-RMLVFPIDDLPELSK 661 (735)
T ss_pred EcCCcEEEEEhHhccccCcCCeEEEEe----C-CCCEEEEEEEEcCCCCEEEEEe-CCC-cEEEEEHHHCCccCC
Confidence 999987776544332211111000000 0 011111 1223332 455666 788 888886665444433
No 52
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=35.87 E-value=3.2e+02 Score=24.42 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=27.4
Q ss_pred CcEEEEEccCCceEEEeCCCCEEEeeCCCCCC-cCCCCCCCccceEEe
Q 015016 229 ETIVKVACGTNHTVAVDSKGYVYTWGFGGYGR-LGHREQKDEWVPRRV 275 (414)
Q Consensus 229 ~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gq-lg~~~~~~~~~p~~i 275 (414)
.+|-+++.-..|.+.- .+|.||+|-+|+.-. ++....-....|.++
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~ 109 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQV 109 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCcccc
Confidence 3566666666655444 569999999998765 444332223344443
No 53
>PF13964 Kelch_6: Kelch motif
Probab=35.05 E-value=33 Score=21.60 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=14.7
Q ss_pred ceEEEEeCCCEEEecCCCC
Q 015016 341 MHHFVGADSSCISWGHAQY 359 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~n~~ 359 (414)
.|+++..+++||++|-...
T Consensus 4 ~~s~v~~~~~iyv~GG~~~ 22 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDN 22 (50)
T ss_pred cCEEEEECCEEEEECCCCC
Confidence 4667777999999996554
No 54
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=34.83 E-value=37 Score=21.19 Aligned_cols=16 Identities=31% Similarity=0.561 Sum_probs=11.3
Q ss_pred CeEEEEEcCCCEEEEE
Q 015016 120 SHTVVVTEDGNSLAFG 135 (414)
Q Consensus 120 ~~~~~lt~~g~vy~~G 135 (414)
.|+++...+++||++|
T Consensus 4 ~h~~~~~~~~~i~v~G 19 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFG 19 (49)
T ss_dssp S-EEEEE-TTEEEEE-
T ss_pred eEEEEEEeCCeEEEEC
Confidence 5888888788999998
No 55
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=34.53 E-value=1.2e+02 Score=26.98 Aligned_cols=69 Identities=12% Similarity=0.046 Sum_probs=39.7
Q ss_pred CCceEEEeCCCCEEEccCCCC-------CCCceeeeeecccCCCCceEEEecCCceEEEEeCCCEEEecCCCCCC-ccCC
Q 015016 294 SVNSSCTAGGGQLYMWGKLKN-------NGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHAQYGE-LGYG 365 (414)
Q Consensus 294 ~~~s~~l~~~g~v~~wG~~~~-------~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~~g~vy~wG~n~~gq-lG~g 365 (414)
..+.++-...|++...--+.- .++...+|.+ ..+-.|-.+...+.|.+...||.||+|=+|+.-. ++..
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq---ahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ---AHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATK 98 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc---ccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccch
Confidence 334445555666666554432 2222222322 2223566777777776666699999999998654 5443
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=33.67 E-value=3.1e+02 Score=23.51 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=52.6
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecC--CeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~~ 134 (414)
.|..+.........++...+|.++.|-..... ....+.. ....+..+..-. .+.++...+|.|+.|
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 45555554323455555568899999754321 1111111 112333333332 345556668999998
Q ss_pred EcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecc-cCCeEEEecCC
Q 015016 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSV-EGASILNAGLP 190 (414)
Q Consensus 135 G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~-~g~~v~~~G~n 190 (414)
-..... ...........|..+.......+++... +| .|+.|-..
T Consensus 79 ~~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~i~~~~~~ 123 (289)
T cd00200 79 DLETGE-----------CVRTLTGHTSYVSSVAFSPDGRILSSSSRDK-TIKVWDVE 123 (289)
T ss_pred EcCccc-----------ceEEEeccCCcEEEEEEcCCCCEEEEecCCC-eEEEEECC
Confidence 754321 1111111122355555544433333323 66 88887544
No 57
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.16 E-value=2.9e+02 Score=25.57 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=11.4
Q ss_pred eEEEEEcCCCEEEEEcC
Q 015016 121 HTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 121 ~~~~lt~~g~vy~~G~n 137 (414)
++.+...++++|++|-.
T Consensus 216 ~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 216 AASIKINESLLLCIGGF 232 (323)
T ss_pred eeEEEECCCEEEEECCc
Confidence 33344567899999854
No 58
>PHA02790 Kelch-like protein; Provisional
Probab=32.95 E-value=1.9e+02 Score=28.84 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=10.3
Q ss_pred EEEcCCCEEEEEcC
Q 015016 124 VVTEDGNSLAFGWN 137 (414)
Q Consensus 124 ~lt~~g~vy~~G~n 137 (414)
+..-+|+||+.|-.
T Consensus 358 ~~~~~g~IYviGG~ 371 (480)
T PHA02790 358 VASINNVIYVIGGH 371 (480)
T ss_pred EEEECCEEEEecCc
Confidence 44557899999853
No 59
>PF13854 Kelch_5: Kelch motif
Probab=32.75 E-value=44 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.100 Sum_probs=14.3
Q ss_pred ceEEEEeCCCEEEecCCC
Q 015016 341 MHHFVGADSSCISWGHAQ 358 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~n~ 358 (414)
.|+++..++++|+||-..
T Consensus 7 ~hs~~~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVVGNNIYIFGGYS 24 (42)
T ss_pred ceEEEEECCEEEEEcCcc
Confidence 577777799999999544
No 60
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=32.33 E-value=2.1e+02 Score=27.38 Aligned_cols=51 Identities=10% Similarity=0.203 Sum_probs=39.8
Q ss_pred EEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEE
Q 015016 70 CVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 70 ~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G 135 (414)
.+++..+|++..|-. ...+.++. ....+.+|..-+....|++..|+||.+.
T Consensus 175 vl~i~~~g~l~~w~~--------------~~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 175 VLGIGRDGKINYWDG--------------NVLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEEEeecCcEeeecC--------------CeeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 667777788888852 24555553 5567999999999999999999999987
No 61
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=32.14 E-value=5.7e+02 Score=26.17 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=29.5
Q ss_pred EEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEE---EecCCceEEE-EeCCCEEEecC
Q 015016 299 CTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRC---MDSGNMHHFV-GADSSCISWGH 356 (414)
Q Consensus 299 ~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~---i~~g~~h~~~-l~~g~vy~wG~ 356 (414)
+..-++.||+.|-.... ....-.....+....+.. +.....+.-+ ..++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~~--~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGT--SALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccCC--CccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 55557899998865441 111111222222223333 4445555544 44999999986
No 62
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.34 E-value=3.8e+02 Score=23.92 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=61.3
Q ss_pred ccccccccCCccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCC--CeEEEEEcCCCceEEEEeCCCCEEEEeC
Q 015016 7 EKMVEEETGKEKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGV--DIRFVAAGCVSCHCVAVDVEGRCYTWGR 84 (414)
Q Consensus 7 ~~~~~~~~~~~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~--~i~~i~~g~~~~~~~~lt~~g~vy~wG~ 84 (414)
+.+=|++...-.||++...|-+..|.-+... ..|-....-... .....+.+- -+-+..+..||+|++.|-
T Consensus 65 td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~-------~~p~~~~~~~~w~e~~~~m~~~R-WYpT~~~L~DG~vlIvGG 136 (243)
T PF07250_consen 65 TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRI-------FTPCTSDGTCDWTESPNDMQSGR-WYPTATTLPDGRVLIVGG 136 (243)
T ss_pred CCCcccCcCCCCCCCEEEeCCCCccccceEE-------EecCCCCCCCCceECcccccCCC-ccccceECCCCCEEEEeC
Confidence 4566787788889999999977654333221 122110000000 011133332 456778888999999994
Q ss_pred CCCCCCcC-CCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCC
Q 015016 85 NERGQLGH-GDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 85 n~~gqlG~-~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~ 138 (414)
...--.-. +.......+..++.+.... .......+=.+.|.-||+||.++.+.
T Consensus 137 ~~~~t~E~~P~~~~~~~~~~~~~l~~~~-~~~~~nlYP~~~llPdG~lFi~an~~ 190 (243)
T PF07250_consen 137 SNNPTYEFWPPKGPGPGPVTLPFLSQTS-DTLPNNLYPFVHLLPDGNLFIFANRG 190 (243)
T ss_pred cCCCcccccCCccCCCCceeeecchhhh-ccCccccCceEEEcCCCCEEEEEcCC
Confidence 43100000 0000011122222222110 11223334467899999999998653
No 63
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=28.79 E-value=7.6e+02 Score=26.57 Aligned_cols=167 Identities=12% Similarity=0.072 Sum_probs=82.4
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCc--eeeccCCCCcEEEEeec-----CCeEEEEEc
Q 015016 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAG-----RSHTVVVTE 127 (414)
Q Consensus 55 ~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~i~~G-----~~~~~~lt~ 127 (414)
+..++.+.......+.+++|+.|++|..-.. +|........-.| ..++...+.+|+.+.+- ....+++|.
T Consensus 534 ~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~---~IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~ 610 (800)
T TIGR01063 534 DDFIEQLLVASTHDYLLFFTNRGKVYWLKVY---QIPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATK 610 (800)
T ss_pred CCeeEEEEEecCCCeEEEEeCCCcEEEEEhh---hCcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeC
Confidence 3455555444446788999999999998432 2221111111111 12333345667766652 235788889
Q ss_pred CCCEEEEEcCCCCC---CCCCCCCCcccCcCeeeeccceEEE-E-eCCCeeEEEecccCCeEEEecCCCCCcccCCCCCC
Q 015016 128 DGNSLAFGWNKHGQ---LGSGSIRNEIEPSPVRCLVSEVTAT-A-CGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNE 202 (414)
Q Consensus 128 ~g~vy~~G~n~~gq---lg~~~~~~~~~~~~~~~~~~~i~~i-s-~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~ 202 (414)
+|.+.-.-.+.+-. .|... ..... .+.+..+ . ...++.++++ +.| ++|.+-..+.-..|.....
T Consensus 611 ~GyiKRi~l~~~~~~~r~G~~a-------iklke-~D~lv~v~~~~~~d~lll~T-s~G-r~~r~~v~eIp~~gr~~~G- 679 (800)
T TIGR01063 611 NGVVKKTSLTEFSNIRSNGIIA-------IKLDD-GDELISVRLTSGDDEVMLGS-KNG-KAVRFPEEDVRPMGRAARG- 679 (800)
T ss_pred CCEEEEEEhHHhhhhccCCccc-------ccCCC-CCEEEEEEEeCCCCEEEEEE-CCC-cEEEEEhhhcCCcCCCCCC-
Confidence 99777654333211 11100 00000 1223322 2 2334466666 788 9998865544333322211
Q ss_pred CcccCcccccccccCCCcee-ecccCCCcEEEEEcc--CCceEEEeCCCCEEEe
Q 015016 203 YNTKDSSVKLAYEAQPRPRA-IAALAGETIVKVACG--TNHTVAVDSKGYVYTW 253 (414)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~I~~g--~~~~~~lt~~G~vy~w 253 (414)
.. +..-.+++|+.+.+- ..+.+++|+.|.+.-.
T Consensus 680 ------------------v~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~ 715 (800)
T TIGR01063 680 ------------------VRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRT 715 (800)
T ss_pred ------------------eecccCCCCCEEEEEEEeccccEEEEEecCCcEEEE
Confidence 11 111234566665543 2345667777766554
No 64
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=28.34 E-value=5e+02 Score=24.27 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=47.5
Q ss_pred CccCCeEeccCC--CCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCC---CCCCCCCceeeccCCCCcEEEEee
Q 015016 43 NLVSPTRLRPLV--GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHG---DKIQRDRPTIVSELSKYKIKKAGA 117 (414)
Q Consensus 43 ~~~~p~~i~~~~--~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~---~~~~~~~p~~v~~~~~~~i~~i~~ 117 (414)
....|-.+..|. ..+|..+++......-+-+..|+.+..|---++-+--.- .......|+++.+-++.+-+-+
T Consensus 72 ~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv-- 149 (420)
T KOG2096|consen 72 TFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV-- 149 (420)
T ss_pred CcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE--
Confidence 344444444443 346777777765566677778888999985543221110 0011236777766555433333
Q ss_pred cCCeEEEEEcCCCEEEEEcC
Q 015016 118 GRSHTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 118 G~~~~~~lt~~g~vy~~G~n 137 (414)
.+....+||+++..
T Consensus 150 ------~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 150 ------SVKRGNKLCVYKLV 163 (420)
T ss_pred ------EEccCCEEEEEEee
Confidence 33345567777743
No 65
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=28.17 E-value=5.8e+02 Score=25.04 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=35.9
Q ss_pred ccCCceEEEeCCCCEEEeeCCCCCCcCC---CCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCC
Q 015016 236 CGTNHTVAVDSKGYVYTWGFGGYGRLGH---REQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKL 312 (414)
Q Consensus 236 ~g~~~~~~lt~~G~vy~wG~n~~gqlg~---~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~ 312 (414)
+-...++++.-+|..++.|++. |.... .+......|+++..+.+... .| .++....+.+|.+.-++
T Consensus 387 ~v~gts~~~S~ng~ylA~GS~~-GiVNIYd~~s~~~s~~PkPik~~dNLtt--~I--------tsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 387 SVHGTSLCISLNGSYLATGSDS-GIVNIYDGNSCFASTNPKPIKTVDNLTT--AI--------TSLQFNHDAQILAIASR 455 (514)
T ss_pred ccceeeeeecCCCceEEeccCc-ceEEEeccchhhccCCCCchhhhhhhhe--ee--------eeeeeCcchhhhhhhhh
Confidence 3355567777888888888754 22221 12233456777776655322 11 23445556666665543
No 66
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=27.25 E-value=8.1e+02 Score=26.38 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=26.4
Q ss_pred CCceeeccCCCCcEEEEeecCCeEEEEEcCCCE--EEEEc
Q 015016 99 DRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNS--LAFGW 136 (414)
Q Consensus 99 ~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~v--y~~G~ 136 (414)
..|.-|.. .+..|..|+|-..|.+.=++++.| |-++.
T Consensus 47 e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 47 EEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 45665553 466899999998888888888875 44443
No 67
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=27.00 E-value=37 Score=24.00 Aligned_cols=11 Identities=18% Similarity=0.033 Sum_probs=8.8
Q ss_pred E-EEeeCCcccc
Q 015016 22 L-LFCGSTCWDA 32 (414)
Q Consensus 22 v-~~~G~n~~g~ 32 (414)
+ |.||+|++.+
T Consensus 58 v~waWGSNKnk~ 69 (84)
T PF07312_consen 58 VYWAWGSNKNKQ 69 (84)
T ss_pred eeeeeccCCCCC
Confidence 5 9999997653
No 68
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.65 E-value=6.1e+02 Score=24.75 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=39.6
Q ss_pred CeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCC
Q 015016 120 SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 120 ~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n 190 (414)
.+++++-.||-+|+.|.- .+++-.-...........+....+|+.|+.+.+-.++.+..+...|..|-..
T Consensus 350 ~ts~~fHpDgLifgtgt~-d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLR 419 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTP-DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLR 419 (506)
T ss_pred eEEeeEcCCceEEeccCC-CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence 466677778888877752 2232221111111112222234569999999988877664343269999544
No 69
>PRK02529 petN cytochrome b6-f complex subunit PetN; Provisional
Probab=26.37 E-value=59 Score=18.60 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=11.6
Q ss_pred CCCEEEecCCCCCCcc
Q 015016 348 DSSCISWGHAQYGELG 363 (414)
Q Consensus 348 ~g~vy~wG~n~~gqlG 363 (414)
.=.+.+||+|..|.+.
T Consensus 17 SlslVVWGRnG~g~~~ 32 (33)
T PRK02529 17 SIAMVVWGRNGDGSID 32 (33)
T ss_pred eeEEEEEecCCccccC
Confidence 3457899999887653
No 70
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=25.47 E-value=1.4e+02 Score=27.73 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=38.6
Q ss_pred EEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEEEe---CCCEEEecC
Q 015016 298 SCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA---DSSCISWGH 356 (414)
Q Consensus 298 ~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~---~g~vy~wG~ 356 (414)
++..+.|++|+|--...... ..++......+..|.+.+....-.+++. ++.||-|-+
T Consensus 323 a~gnq~g~v~vwdL~~~ep~--~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPP--KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECCCCCCc--cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 45567899999975332221 4455666667778999988776554443 899999954
No 71
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=25.20 E-value=2.8e+02 Score=24.44 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCC--eEEEEEcCCCEEEEEcC
Q 015016 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRS--HTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~~~~lt~~g~vy~~G~n 137 (414)
..-.++.+.+|.||+|-.|-+|++- .++....+....-|..|+. -.+.-..+|+++.|-.-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~----------d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~ 132 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHS----------DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK 132 (238)
T ss_pred CceEEeecccceEEEecCCccchHH----------HhhhcccccceeccccccccceeEEeccCCceeeeccc
Confidence 3567788999999999999777642 2222233334455666666 55566678899988643
No 72
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=23.61 E-value=5e+02 Score=22.68 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=12.8
Q ss_pred CeEEEEEcCCCEEEEEc
Q 015016 120 SHTVVVTEDGNSLAFGW 136 (414)
Q Consensus 120 ~~~~~lt~~g~vy~~G~ 136 (414)
--.++++.+|+||+...
T Consensus 186 pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEBTTS-EEEEEE
T ss_pred CCcceEcCCCCEEEEEc
Confidence 45789999999999754
No 73
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=23.60 E-value=1.3e+02 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.1
Q ss_pred CCCCcEEEEeecCCeEEEEEcCC
Q 015016 107 LSKYKIKKAGAGRSHTVVVTEDG 129 (414)
Q Consensus 107 ~~~~~i~~i~~G~~~~~~lt~~g 129 (414)
.++.+|+++..|-.++++.+++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 34678999999999999999998
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=23.43 E-value=5.5e+02 Score=23.12 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=25.0
Q ss_pred CCceeeccCCCCcEEEEeecCCeEEEE-EcCCCEEEEEcC
Q 015016 99 DRPTIVSELSKYKIKKAGAGRSHTVVV-TEDGNSLAFGWN 137 (414)
Q Consensus 99 ~~p~~v~~~~~~~i~~i~~G~~~~~~l-t~~g~vy~~G~n 137 (414)
..|.++..-++.-=.-+-|-..++++- ++++.|-.|...
T Consensus 134 App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 134 APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 455555544443234566888888766 677889999753
No 75
>PHA02713 hypothetical protein; Provisional
Probab=22.89 E-value=1.3e+02 Score=30.68 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=12.6
Q ss_pred CCeEEEEEcCCCEEEEEcC
Q 015016 119 RSHTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 119 ~~~~~~lt~~g~vy~~G~n 137 (414)
+.+..+..-+|+||++|-.
T Consensus 342 R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred hhceeEEEECCEEEEECCc
Confidence 3344455557899999853
No 76
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=22.84 E-value=81 Score=21.28 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=12.6
Q ss_pred CCeeEEEecccCCeEEEe
Q 015016 170 ADFTVWLSSVEGASILNA 187 (414)
Q Consensus 170 ~~~~~~l~~~~g~~v~~~ 187 (414)
..|+++||+.+|.++|+.
T Consensus 43 ~~f~FvLT~~~G~r~Yg~ 60 (65)
T PF03456_consen 43 QFFSFVLTDEDGSRLYGY 60 (65)
T ss_dssp CEEEEEEE-TTS-EEEEE
T ss_pred eEEEEEEECCCCCEEEEE
Confidence 458999998888778764
No 77
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=22.83 E-value=80 Score=19.26 Aligned_cols=16 Identities=19% Similarity=0.030 Sum_probs=12.4
Q ss_pred ceEEEEeCCCEEEecC
Q 015016 341 MHHFVGADSSCISWGH 356 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~ 356 (414)
.|+++..+++||+.|-
T Consensus 4 ~~~~~~~~~~iyv~GG 19 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGG 19 (47)
T ss_dssp SEEEEEETTEEEEEEE
T ss_pred cCEEEEECCEEEEEee
Confidence 4566666999999983
No 78
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.76 E-value=7e+02 Score=26.41 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=60.5
Q ss_pred cCceEEEeeCCccccccccCCCC-----CCCccCCeEec--cCCCCCeEEEEEcCCCceEEEEeCCCCEEE------EeC
Q 015016 18 KGGELLFCGSTCWDAVGRRKGAL-----DGNLVSPTRLR--PLVGVDIRFVAAGCVSCHCVAVDVEGRCYT------WGR 84 (414)
Q Consensus 18 ~~g~v~~~G~n~~g~LG~~~~~~-----~~~~~~p~~i~--~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~------wG~ 84 (414)
.|+++|+|=.+....+-..--.. .+.......+. ......|.+|.+.....|-++.-..| |.+ ||.
T Consensus 40 ~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~ 118 (717)
T PF10168_consen 40 RDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGK 118 (717)
T ss_pred eCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCc
Confidence 47899999988776655422000 01111112221 22345788888776445544444444 333 676
Q ss_pred CCCCCCcCCCCCCCCCceeeccC---CCCcEEEEee-----cCCeEEEEEcCCCEEEEE
Q 015016 85 NERGQLGHGDKIQRDRPTIVSEL---SKYKIKKAGA-----GRSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 85 n~~gqlG~~~~~~~~~p~~v~~~---~~~~i~~i~~-----G~~~~~~lt~~g~vy~~G 135 (414)
+..-+.|.....-+..|.--..+ ....|.++.= .+.|-++||+|+.+-.+-
T Consensus 119 ~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~ 177 (717)
T PF10168_consen 119 NGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYD 177 (717)
T ss_pred cccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEe
Confidence 54433333222112222211122 2346777753 368999999999876654
No 79
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=22.15 E-value=7.7e+02 Score=24.34 Aligned_cols=75 Identities=5% Similarity=-0.009 Sum_probs=35.9
Q ss_pred EEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecC-CceEEEEe--CCCEEEecCCCCCCccCC
Q 015016 290 ISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSG-NMHHFVGA--DSSCISWGHAQYGELGYG 365 (414)
Q Consensus 290 i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g-~~h~~~l~--~g~vy~wG~n~~gqlG~g 365 (414)
+.-...+.++-+-++.++++............--.=....+..+ ++.+. +..+++-- +|+||.|+++..-.+...
T Consensus 393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~-~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l 470 (503)
T KOG0282|consen 393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC-QVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL 470 (503)
T ss_pred cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee-eEEEcCCCCeEEeecCCccEEEeechhhhhhhcc
Confidence 33444556666777888887653321111100000000112222 23333 33344433 899999999986555443
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.08 E-value=7.7e+02 Score=23.95 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=37.1
Q ss_pred ccEEEecC--CceEEEeCCCCEEEccCCCCCCCceeeeeecccC--CCCceEEEecCCceEEEEe---CCCEEEecCCC
Q 015016 287 EAVISAGS--VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDL--SGWNLRCMDSGNMHHFVGA---DSSCISWGHAQ 358 (414)
Q Consensus 287 i~~i~~g~--~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~--~~~~i~~i~~g~~h~~~l~---~g~vy~wG~n~ 358 (414)
|.++.... .+.++-..+.++..|--. +...+.+...- ...-|.....|.+..++.. |++||.|-+-+
T Consensus 398 its~~iS~d~k~~LvnL~~qei~LWDl~-----e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s 471 (519)
T KOG0293|consen 398 ITSFSISKDGKLALVNLQDQEIHLWDLE-----ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS 471 (519)
T ss_pred eeEEEEcCCCcEEEEEcccCeeEEeecc-----hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC
Confidence 33444333 334444567888888542 22222222211 1223666777777666665 89999997655
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.77 E-value=6.5e+02 Score=28.26 Aligned_cols=76 Identities=29% Similarity=0.439 Sum_probs=44.3
Q ss_pred cEEEEeecCCe-EEEEE--cCCCEEEEEcCCCCCCCC-CCCCCcccCcCeeeeccceEE-EEeCCCeeEEEecccCCeEE
Q 015016 111 KIKKAGAGRSH-TVVVT--EDGNSLAFGWNKHGQLGS-GSIRNEIEPSPVRCLVSEVTA-TACGADFTVWLSSVEGASIL 185 (414)
Q Consensus 111 ~i~~i~~G~~~-~~~lt--~~g~vy~~G~n~~gqlg~-~~~~~~~~~~~~~~~~~~i~~-is~G~~~~~~l~~~~g~~v~ 185 (414)
.+.+++....| +++++ +||.|-+|-..+. .|. +......+..+. ...+.. -.|++.+.+++..+|| .|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s~rS~ltys~~---~sr~~~vt~~~~~~~~Av~t~DG-~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGSARSELTYSPE---GSRVEKVTMCGNGDQFAVSTKDG-SVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcceeeeeEEEecc---CCceEEEEeccCCCeEEEEcCCC-eEE
Confidence 46688888888 66664 7899999975433 222 222221111111 122332 3577777777776888 888
Q ss_pred EecCCCC
Q 015016 186 NAGLPQY 192 (414)
Q Consensus 186 ~~G~n~~ 192 (414)
..+-+.+
T Consensus 1124 ~~~id~~ 1130 (1431)
T KOG1240|consen 1124 VLRIDHY 1130 (1431)
T ss_pred EEEcccc
Confidence 8776653
Done!