Query 015016
Match_columns 414
No_of_seqs 185 out of 2073
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kci_A Probable E3 ubiquitin-p 100.0 7.6E-71 2.6E-75 529.1 30.7 360 17-403 17-388 (389)
2 1a12_A RCC1, regulator of chro 100.0 4.6E-66 1.6E-70 500.1 38.9 369 17-405 24-412 (413)
3 3mvd_K Regulator of chromosome 100.0 2.7E-65 9.2E-70 496.6 43.1 363 17-404 40-420 (423)
4 3of7_A Regulator of chromosome 100.0 3.8E-66 1.3E-70 508.4 36.2 362 17-402 26-450 (473)
5 4d9s_A UVB-resistance protein 100.0 8.6E-66 2.9E-70 496.5 36.1 338 17-381 32-378 (406)
6 4d9s_A UVB-resistance protein 100.0 4.9E-64 1.7E-68 484.2 36.5 328 55-406 15-351 (406)
7 3kci_A Probable E3 ubiquitin-p 100.0 2.3E-61 7.8E-66 463.2 27.0 323 60-406 5-339 (389)
8 3mvd_K Regulator of chromosome 100.0 3.8E-58 1.3E-62 446.3 31.1 321 55-406 23-368 (423)
9 1a12_A RCC1, regulator of chro 100.0 2.7E-58 9.1E-63 445.8 29.5 322 60-406 12-359 (413)
10 3of7_A Regulator of chromosome 100.0 3.9E-58 1.3E-62 451.4 24.9 325 57-406 11-399 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 1.8E-52 6.1E-57 382.5 30.4 279 21-411 3-281 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 3.6E-45 1.2E-49 334.1 27.5 234 19-351 41-275 (282)
13 1p22_A F-BOX/WD-repeat protein 95.1 2.2 7.4E-05 40.0 27.0 237 56-358 174-414 (435)
14 4gbf_A Phikz131; 7-bladed beta 94.9 0.07 2.4E-06 45.6 7.2 84 57-155 310-396 (400)
15 4gbf_A Phikz131; 7-bladed beta 94.7 0.031 1.1E-06 47.8 4.6 68 229-313 309-376 (400)
16 2ovr_B FBW7, F-BOX/WD repeat p 93.0 5.9 0.0002 37.0 31.1 234 57-358 201-442 (445)
17 3k26_A Polycomb protein EED; W 92.7 5.3 0.00018 35.7 24.3 271 56-356 70-364 (366)
18 1p22_A F-BOX/WD-repeat protein 92.5 6.9 0.00024 36.5 28.5 228 57-356 135-363 (435)
19 1k3i_A Galactose oxidase precu 92.2 10 0.00035 37.9 20.2 67 295-361 458-534 (656)
20 3odt_A Protein DOA1; ubiquitin 90.7 7.8 0.00027 33.6 28.5 230 56-358 60-296 (313)
21 1k3i_A Galactose oxidase precu 89.7 6.3 0.00021 39.4 14.8 18 67-84 288-305 (656)
22 2ovr_B FBW7, F-BOX/WD repeat p 89.4 14 0.00047 34.4 34.8 225 58-357 122-347 (445)
23 3mmy_A MRNA export factor; mRN 88.9 12 0.00041 33.2 28.3 153 54-256 38-198 (368)
24 2zwa_A Leucine carboxyl methyl 88.5 18 0.00062 36.4 17.2 18 119-136 441-459 (695)
25 2zwa_A Leucine carboxyl methyl 86.8 28 0.00095 35.0 17.8 20 237-256 490-509 (695)
26 1gxr_A ESG1, transducin-like e 86.0 17 0.00057 31.8 28.1 234 67-358 11-255 (337)
27 2uvk_A YJHT; unknown function, 86.0 4.7 0.00016 36.6 10.4 16 341-356 309-324 (357)
28 4aez_A CDC20, WD repeat-contai 84.9 23 0.00078 32.3 28.4 114 54-190 133-247 (401)
29 4a11_B DNA excision repair pro 84.0 24 0.00081 31.8 31.9 87 48-137 36-130 (408)
30 1sq9_A Antiviral protein SKI8; 82.5 27 0.00094 31.4 23.0 77 56-138 63-157 (397)
31 3no2_A Uncharacterized protein 80.1 29 0.00099 30.1 21.6 67 296-363 187-266 (276)
32 3jrp_A Fusion protein of prote 78.8 35 0.0012 30.3 25.3 112 57-190 13-133 (379)
33 3zwl_B Eukaryotic translation 75.0 43 0.0015 29.4 25.3 30 56-85 75-104 (369)
34 1r5m_A SIR4-interacting protei 75.0 48 0.0016 29.9 24.1 31 56-86 150-180 (425)
35 3jro_A Fusion protein of prote 74.9 74 0.0025 32.1 21.1 112 57-190 11-131 (753)
36 1gxr_A ESG1, transducin-like e 74.2 43 0.0015 29.0 31.2 267 17-357 18-295 (337)
37 3sfz_A APAF-1, apoptotic pepti 73.6 1E+02 0.0034 33.0 23.8 59 119-190 1015-1073(1249)
38 3odt_A Protein DOA1; ubiquitin 72.3 46 0.0016 28.5 30.2 227 56-356 19-253 (313)
39 3jro_A Fusion protein of prote 71.7 88 0.003 31.5 20.6 73 56-138 54-132 (753)
40 3v7d_B Cell division control p 70.7 66 0.0023 29.7 34.2 240 56-357 163-420 (464)
41 3v7d_B Cell division control p 67.7 76 0.0026 29.2 30.0 240 56-354 204-459 (464)
42 3ii7_A Kelch-like protein 7; p 67.7 61 0.0021 28.1 14.7 18 340-357 239-256 (306)
43 2woz_A Kelch repeat and BTB do 65.5 37 0.0013 29.8 9.9 204 119-355 47-260 (318)
44 2vpj_A Kelch-like protein 12; 64.6 16 0.00053 32.0 7.1 17 68-85 105-121 (301)
45 2vpj_A Kelch-like protein 12; 62.0 27 0.00094 30.3 8.3 18 68-86 55-72 (301)
46 1yfq_A Cell cycle arrest prote 60.3 85 0.0029 27.2 27.7 162 56-257 12-179 (342)
47 3mkq_A Coatomer beta'-subunit; 60.0 1.4E+02 0.0049 29.8 24.7 111 56-189 56-170 (814)
48 3k26_A Polycomb protein EED; W 58.8 92 0.0032 27.1 20.4 72 55-137 115-191 (366)
49 1zgk_A Kelch-like ECH-associat 58.8 32 0.0011 30.1 8.1 16 68-84 161-176 (308)
50 3ii7_A Kelch-like protein 7; p 56.5 41 0.0014 29.3 8.4 17 68-85 94-110 (306)
51 4h5i_A Guanine nucleotide-exch 55.9 1.1E+02 0.0039 27.3 14.2 24 332-355 314-340 (365)
52 3jrp_A Fusion protein of prote 55.8 1.1E+02 0.0036 26.9 22.6 73 56-138 56-134 (379)
53 2pm9_A Protein WEB1, protein t 54.4 1.2E+02 0.0041 27.1 26.1 75 56-138 68-145 (416)
54 4aow_A Guanine nucleotide-bind 54.0 1.1E+02 0.0037 26.4 24.7 31 56-86 87-117 (340)
55 4gga_A P55CDC, cell division c 52.6 1.4E+02 0.0046 27.2 24.6 69 56-136 148-216 (420)
56 4asc_A Kelch repeat and BTB do 50.3 1.3E+02 0.0043 26.2 12.4 59 296-357 190-252 (315)
57 3i2n_A WD repeat-containing pr 48.6 1.3E+02 0.0046 26.0 22.0 70 110-190 19-98 (357)
58 3sfz_A APAF-1, apoptotic pepti 48.4 2.8E+02 0.0094 29.5 23.4 68 57-137 1005-1073(1249)
59 3no2_A Uncharacterized protein 48.4 1.3E+02 0.0044 25.8 24.0 73 111-190 89-164 (276)
60 3mmy_A MRNA export factor; mRN 47.7 1.4E+02 0.0048 25.9 19.2 150 109-312 39-198 (368)
61 4gqb_B Methylosome protein 50; 47.2 1.5E+02 0.0052 26.2 22.7 71 111-189 84-156 (344)
62 1xip_A Nucleoporin NUP159; bet 46.9 1.7E+02 0.0059 26.8 11.7 65 112-190 90-154 (388)
63 3i2n_A WD repeat-containing pr 46.1 1.5E+02 0.005 25.7 25.6 71 56-137 66-147 (357)
64 1xip_A Nucleoporin NUP159; bet 43.6 1.9E+02 0.0067 26.4 11.8 99 162-309 89-187 (388)
65 2aq5_A Coronin-1A; WD40 repeat 43.4 1.8E+02 0.0062 26.0 28.6 113 60-190 39-162 (402)
66 4g56_B MGC81050 protein; prote 42.1 1.8E+02 0.0063 25.7 27.9 235 57-359 96-344 (357)
67 2xyi_A Probable histone-bindin 40.2 2.2E+02 0.0074 25.9 21.4 239 17-309 148-406 (430)
68 1r5m_A SIR4-interacting protei 40.0 2E+02 0.0068 25.5 25.5 69 57-138 110-180 (425)
69 2ymu_A WD-40 repeat protein; u 39.9 2.5E+02 0.0084 26.5 24.1 66 57-135 346-413 (577)
70 3zwl_B Eukaryotic translation 39.0 1.9E+02 0.0065 25.0 29.6 79 46-137 24-104 (369)
71 3mkq_A Coatomer beta'-subunit; 38.7 3.1E+02 0.011 27.3 28.1 232 57-358 15-259 (814)
72 1sq9_A Antiviral protein SKI8; 38.4 2.1E+02 0.0071 25.3 20.1 29 110-138 17-45 (397)
73 3uc1_A DNA gyrase subunit A; D 38.2 2.2E+02 0.0074 25.4 20.5 170 57-254 43-225 (327)
74 4g56_B MGC81050 protein; prote 36.8 2.2E+02 0.0076 25.1 28.1 51 300-356 245-299 (357)
75 3no0_A DNA gyrase subunit A; D 34.9 2.2E+02 0.0076 24.5 18.8 209 54-308 22-239 (276)
76 2uvk_A YJHT; unknown function, 34.6 1.3E+02 0.0046 26.5 8.3 17 340-356 110-126 (357)
77 2xn4_A Kelch-like protein 2; s 33.9 2.2E+02 0.0076 24.3 12.4 61 296-357 149-213 (302)
78 1suu_A DNA gyrase subunit A; t 32.0 2.6E+02 0.009 24.5 18.2 182 54-263 45-237 (312)
79 4aez_A CDC20, WD repeat-contai 29.1 3.1E+02 0.011 24.4 26.5 104 61-190 99-204 (401)
80 1pgu_A Actin interacting prote 25.7 4.2E+02 0.014 24.9 25.1 27 230-256 255-282 (615)
81 4a11_B DNA excision repair pro 24.7 3.5E+02 0.012 23.6 28.9 254 55-359 99-366 (408)
82 3p6j_A De novo designed beta-t 23.7 2.5E+02 0.0085 21.5 11.3 68 108-187 28-97 (142)
83 1pgu_A Actin interacting prote 23.6 4.6E+02 0.016 24.6 29.4 196 56-311 161-364 (615)
84 3fvz_A Peptidyl-glycine alpha- 22.8 3.7E+02 0.013 23.2 11.5 16 240-255 295-310 (329)
85 1zvt_A Topoisomerase IV subuni 22.8 3.5E+02 0.012 22.9 12.3 132 54-197 31-169 (256)
86 2ymu_A WD-40 repeat protein; u 22.6 4.8E+02 0.016 24.4 28.5 66 57-135 305-372 (577)
87 1got_B GT-beta; complex (GTP-b 21.5 4E+02 0.014 23.0 28.9 105 230-354 228-339 (340)
88 1k8k_C P40, ARP2/3 complex 41 20.7 4.1E+02 0.014 22.9 23.1 71 56-136 9-81 (372)
89 3fvz_A Peptidyl-glycine alpha- 20.0 4.2E+02 0.014 22.8 21.6 20 67-86 25-44 (329)
No 1
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.6e-71 Score=529.05 Aligned_cols=360 Identities=26% Similarity=0.488 Sum_probs=317.7
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 96 (414)
++||+||+||+|.+||||.+. ......|.+++.+.+.++++|++| ..|+++|+++|+||+||.|.+||||.++..
T Consensus 17 ~~~G~v~~wG~n~~GqLG~~~---~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~ 91 (389)
T 3kci_A 17 QGSGTIYGWGHNHRGQLGGIE---GAKVKVPTPCEALATLRPVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTE 91 (389)
T ss_dssp ----CEEEEEECTTSTTSSCS---CSEEEEEEECHHHHHTCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSC
T ss_pred CCCCeEEEeeCCCCccCCCCc---CccccCCEecccccCCceEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcC
Confidence 789999999999999999875 345678888888888899999999 899999999999999999999999999988
Q ss_pred CCCCceeeccCCCC--cEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCee
Q 015016 97 QRDRPTIVSELSKY--KIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFT 173 (414)
Q Consensus 97 ~~~~p~~v~~~~~~--~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~ 173 (414)
....|++++.+... ++++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||.+|+
T Consensus 92 ~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs 171 (389)
T 3kci_A 92 SVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHS 171 (389)
T ss_dssp CEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEE
T ss_pred CccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeE
Confidence 88899999987765 457899999999999999999999999999999998777666666665543 699999999999
Q ss_pred EEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccC--CceEEEeCCCCEE
Q 015016 174 VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVY 251 (414)
Q Consensus 174 ~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~--~~~~~lt~~G~vy 251 (414)
++|+ ++| +||+||.|.+||||.+.... ...|..+..+.+.+|++|+||. .|+++|+++|+||
T Consensus 172 ~alt-~~G-~v~~wG~n~~GqLG~~~~~~--------------~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~ 235 (389)
T 3kci_A 172 ACVT-AAG-DLYTWGKGRYGRLGHSDSED--------------QLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVW 235 (389)
T ss_dssp EEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------EEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEE
T ss_pred EEEe-CCC-eEEEeCCCCCCCcCCCCCcc--------------cccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEE
Confidence 9999 899 99999999999999987643 4467777778888999999995 8999999999999
Q ss_pred EeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCC------CCCceeeeeec
Q 015016 252 TWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPL 325 (414)
Q Consensus 252 ~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~------~~~~~~~p~~~ 325 (414)
+||.|.+||||.+.......|.++..+... .+++|+||..|+++|+++|+||+||.|.. .......|.++
T Consensus 236 ~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v 311 (389)
T 3kci_A 236 SWGDGDYGKLGRGGSDGCKVPMKIDSLTGL----GVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311 (389)
T ss_dssp EEECCGGGTTSSSSCCCEEEEEECGGGTTS----CEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEEC
T ss_pred EEeCCCCCCCCCCCCCCccccEEecccCCC----cEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEe
Confidence 999999999999988888899999876653 35699999999999999999999999863 23456789999
Q ss_pred ccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccC
Q 015016 326 MDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRT 403 (414)
Q Consensus 326 ~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g 403 (414)
..+.+.+|++|+||..|+++++ +|+||+||+|.+||||.++. .....|++|+.+.+++|.+|+||.+||++|++++
T Consensus 312 ~~l~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~v~~va~G~~ht~al~~~~ 388 (389)
T 3kci_A 312 QGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTT--NAIQRPRLVAALQGKKVNRVACGSAHTLAWSTSK 388 (389)
T ss_dssp GGGTTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSC--CCEEEEEECGGGTTSCCCEEEEETTEEEEECC--
T ss_pred ccCCCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCC--CCccCcEEecccCCCCEEEEEecCCcEEEEecCC
Confidence 9998889999999999999999 99999999999999999987 7788999999999999999999999999999764
No 2
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=4.6e-66 Score=500.13 Aligned_cols=369 Identities=23% Similarity=0.376 Sum_probs=303.2
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 96 (414)
.++|+||+||.|.+||||.+... .....|..+..+ .+|++|++| ..|+++|+++|+||+||.|.+||||.+...
T Consensus 24 ~~~g~v~~wG~n~~GqLG~g~~~--~~~~~P~~v~~~--~~i~~va~G--~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~ 97 (413)
T 1a12_A 24 TEPGLVLTLGQGDVGQLGLGENV--MERKKPALVSIP--EDVVQAEAG--GMHTVCLSKSGQVYSFGCNDEGALGRDTSV 97 (413)
T ss_dssp CCCBEEEEEEECTTSTTCSCTTC--CEEEEEEEECCS--SCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCCCS
T ss_pred cCCCcEEEEECCCCCcCCCCCCc--cccccceEccCC--CCeEEEEeC--CCeEEEEcCCCCEEEEECCCCCCCCCCCCC
Confidence 67999999999999999999732 225678888754 589999999 899999999999999999999999998763
Q ss_pred --CCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEc--CCCCCCCCCCCCCcc-cCcCeeeeccceEEEEeCCC
Q 015016 97 --QRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLGSGSIRNEI-EPSPVRCLVSEVTATACGAD 171 (414)
Q Consensus 97 --~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~--n~~gqlg~~~~~~~~-~~~~~~~~~~~i~~is~G~~ 171 (414)
....|.++.. . .+|++|+||..|+++|+++|+||+||. |.+||||.+...... .|.++ ....+|++|+||.+
T Consensus 98 ~~~~~~P~~v~l-~-~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v-~~~~~i~~ia~G~~ 174 (413)
T 1a12_A 98 EGSEMVPGKVEL-Q-EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV-QLDVPVVKVASGND 174 (413)
T ss_dssp TTGGGSCEECCC-C-SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE-CCSSCEEEEEECSS
T ss_pred CccccCCeEecC-C-CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe-cCCCCEEEEEecCc
Confidence 4567888854 3 389999999999999999999999998 999999987543322 23333 12346999999999
Q ss_pred eeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeeccc-----CCCcEEEEEccCCceEEEeC
Q 015016 172 FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAAL-----AGETIVKVACGTNHTVAVDS 246 (414)
Q Consensus 172 ~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~I~~g~~~~~~lt~ 246 (414)
|+++|+ ++| +||+||.|.+||||.+......... .. .......|..+... ...+|++|+||..|+++|++
T Consensus 175 hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~~~~-~~--~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~ 249 (413)
T 1a12_A 175 HLVMLT-ADG-DLYTLGCGEQGQLGRVPELFANRGG-RQ--GLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 249 (413)
T ss_dssp EEEEEE-TTS-CEEEEECCTTSTTCSCGGGTSSSCG-GG--GHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET
T ss_pred eEEEEc-CCC-CEEEeeCCCCCccCCCccccccccc-cc--cccccccCceEeeccccccCCccEEEEEeCCCEEEEEeC
Confidence 999999 899 9999999999999987543211100 00 00112344333321 34679999999999999999
Q ss_pred CCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCC-------CCCce
Q 015016 247 KGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKN-------NGDDW 319 (414)
Q Consensus 247 ~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~-------~~~~~ 319 (414)
+|+||+||.|.+||||.+.......|+++..+... ...|++|+||..|+++|+++|+||+||.|.. .....
T Consensus 250 ~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~--~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~ 327 (413)
T 1a12_A 250 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNS--TKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEK 327 (413)
T ss_dssp TCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCT--TCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCE
T ss_pred CCCEEEEeCCCCcCCCCCCCCcccccEEchhccCC--CceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccc
Confidence 99999999999999999988888899998876542 1246799999999999999999999999863 23446
Q ss_pred eeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeecc--CCCceEEEEEecCCce
Q 015016 320 MYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVISVACGYGHS 396 (414)
Q Consensus 320 ~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~--~~~~~v~~v~~G~~~t 396 (414)
..|.++..+. +|++|+||..|+++++ +|+||+||.|.+||||.++. .....|++|.. +.+.+|.+|+||.+|+
T Consensus 328 ~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~--~~~~~P~~v~~~~~~~~~v~~v~~G~~ht 403 (413)
T 1a12_A 328 SIPTLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD--EDAWSPVEMMGKQLENRVVLSVSSGGQHT 403 (413)
T ss_dssp EEEEECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--SCEEEEEECCSTTTTTEEEEEEEECSSEE
T ss_pred cCCEEecccC--ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCC--CCcccCeEccccccCCCeEEEEeeCCCcE
Confidence 6788888776 7999999999999999 99999999999999999987 67788998874 5678999999999999
Q ss_pred EEEEccCcc
Q 015016 397 LVIVDRTNV 405 (414)
Q Consensus 397 ~~l~~~g~v 405 (414)
++|++++++
T Consensus 404 ~~l~~~g~~ 412 (413)
T 1a12_A 404 VLLVKDKEQ 412 (413)
T ss_dssp EEEEEECSC
T ss_pred EEEEecCCC
Confidence 999999875
No 3
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-65 Score=496.63 Aligned_cols=363 Identities=20% Similarity=0.328 Sum_probs=302.9
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 96 (414)
.++|+||+||.|.+||||.+.+. .....|.+++.+. +|++|++| ..|+++|+++|+||+||.|.+||||.+...
T Consensus 40 ~~~G~v~~wG~n~~GqLG~g~~~--~~~~~p~~v~~l~--~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~ 113 (423)
T 3mvd_K 40 TVLGNVLVCGNGDVGQLGLGEDI--LERKRLSPVAGIP--DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSE 113 (423)
T ss_dssp CCCEEEEEEEECTTSTTCSCSSC--CEEEEEEECCSCS--SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCS
T ss_pred cCCCcEEEEeCCCCCCCCCCCCC--ccCcCCeEccCCC--CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcC
Confidence 78999999999999999999632 3456788888776 68999999 899999999999999999999999999776
Q ss_pred C--CCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEc--CCCCCCCCCCCCCcccCcCeeee-ccceEEEEeCCC
Q 015016 97 Q--RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLGSGSIRNEIEPSPVRCL-VSEVTATACGAD 171 (414)
Q Consensus 97 ~--~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~--n~~gqlg~~~~~~~~~~~~~~~~-~~~i~~is~G~~ 171 (414)
. ...|.++... .+|++|+||..|+++|+++|+||+||. |.+||||.+..... +.|++.+ ..+|++|+||.+
T Consensus 114 ~~~~~~P~~v~~~--~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~--~~p~~~~~~~~i~~va~G~~ 189 (423)
T 3mvd_K 114 DGSESKPDLIDLP--GKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNK--RTPIDLMEGTVCCSIASGAD 189 (423)
T ss_dssp TTSSSSCEECCCS--SCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCE--EEEEESSTTCCEEEEEECSS
T ss_pred CccccCCeEEcCC--CCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCC--ceeeEecCCCcEEEEecCCC
Confidence 5 5678888753 479999999999999999999999998 99999998766554 3333333 245999999999
Q ss_pred eeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEE-eCCCCE
Q 015016 172 FTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAV-DSKGYV 250 (414)
Q Consensus 172 ~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~l-t~~G~v 250 (414)
|+++|+ ++| +||+||.|.+||||.+.......... ........|..+......+|++|+||..|++++ +.+|+|
T Consensus 190 hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~~~~~---~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v 264 (423)
T 3mvd_K 190 HLVILT-TAG-KVFTVGCAEQGQLGRLSERSISGEGR---RGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVI 264 (423)
T ss_dssp EEEEEE-TTS-CEEEEECCTTSTTSSCCTTTTTSCST---TTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCE
T ss_pred eEEEEe-cCC-eEEEeeCCcCCccCCCcccccccccc---cccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeE
Confidence 999999 899 99999999999999987654222111 111234567777766777899999999999999 699999
Q ss_pred EEeeCCCCCCcCCCCCCCc--cceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCC-------CCceee
Q 015016 251 YTWGFGGYGRLGHREQKDE--WVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN-------GDDWMY 321 (414)
Q Consensus 251 y~wG~n~~gqlg~~~~~~~--~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~-------~~~~~~ 321 (414)
|+||.|.+||||....... ..|.++. ...|++|+||..|+++|+++|+||+||.|... ......
T Consensus 265 ~~wG~n~~gqlg~~~~~~~~~~~p~~~~-------~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~ 337 (423)
T 3mvd_K 265 WATGLNNFKQLAHETKGKEFALTPIKTE-------LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEK 337 (423)
T ss_dssp EEEEECTTCTTSSCCTTCSEEEEEEEEC-------CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEE
T ss_pred EEEeCCCCCcCCCCCCCCceeeeeEEcC-------CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccC
Confidence 9999999999999654433 3454443 23577999999999999999999999998732 122457
Q ss_pred eeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeecc--CCCceEEEEEecCCceEE
Q 015016 322 PKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVISVACGYGHSLV 398 (414)
Q Consensus 322 p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~--~~~~~v~~v~~G~~~t~~ 398 (414)
|.++..+.+ +|++|+||..|+++++ +|+||+||.|.+||||.++. .....|++|.. +.+++|.+|+||.+||++
T Consensus 338 p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~ 414 (423)
T 3mvd_K 338 PTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDG--DDELEPIVVVSKNTQGKHMLLASGGGQHAIF 414 (423)
T ss_dssp EEECTTCCS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSS--CCEEEEEECCSTTTTTCCEEEEEECSSEEEE
T ss_pred ceEeccCCC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCC--CCcccCeEEeCcccCCCEEEEEEECCCcEEE
Confidence 888887776 8999999999999999 99999999999999999987 77778999975 677899999999999999
Q ss_pred EEccCc
Q 015016 399 IVDRTN 404 (414)
Q Consensus 399 l~~~g~ 404 (414)
|+++++
T Consensus 415 l~~~~k 420 (423)
T 3mvd_K 415 LVKADK 420 (423)
T ss_dssp EEECC-
T ss_pred EEcccc
Confidence 999885
No 4
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-66 Score=508.35 Aligned_cols=362 Identities=22% Similarity=0.352 Sum_probs=296.0
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccC--CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPL--VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGD 94 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~--~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~ 94 (414)
.++|+||+||.|.+||||.+..........|..++.+ ...+|++|+|| ..|+++|+++|+||+||.|.+||||.+.
T Consensus 26 ~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G--~~Ht~alt~~G~v~~wG~n~~GqLG~~~ 103 (473)
T 3of7_A 26 VQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVG--GMHTLALDEESNVWSWGCNDVGALGRDT 103 (473)
T ss_dssp SSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSCC
T ss_pred CCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeC--CCeEEEEecCCeEEEeECCCCCCCCCCC
Confidence 5689999999999999999974333346678887776 46689999999 8999999999999999999999999987
Q ss_pred CCC-----------------------CCCceeecc--C----CCCcEEEEeecCCeEEEEEcCCCEEEEEc--CCCCCCC
Q 015016 95 KIQ-----------------------RDRPTIVSE--L----SKYKIKKAGAGRSHTVVVTEDGNSLAFGW--NKHGQLG 143 (414)
Q Consensus 95 ~~~-----------------------~~~p~~v~~--~----~~~~i~~i~~G~~~~~~lt~~g~vy~~G~--n~~gqlg 143 (414)
... ...|++++. + .+.+|++|+||..|+++|+++|+||+||. +.+||||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG 183 (473)
T 3of7_A 104 SNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILG 183 (473)
T ss_dssp C---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEE
T ss_pred cccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccC
Confidence 654 457888875 5 36789999999999999999999999998 6889999
Q ss_pred CCCCC--CcccCcCeeeecc-ceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCc
Q 015016 144 SGSIR--NEIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRP 220 (414)
Q Consensus 144 ~~~~~--~~~~~~~~~~~~~-~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (414)
.+... ....|.+++.+.. +|++|+||.+|+++|+ ++| +||+||.|.+||||.+...... .....|
T Consensus 184 ~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt-~~G-~v~~wG~n~~GqLG~~~~~~~~----------~~~~~p 251 (473)
T 3of7_A 184 FYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLD-EEG-MVFAWGNGQQNQLGRKVMERFR----------LKTLDP 251 (473)
T ss_dssp SBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEE-TTS-CEEEEECCTTSTTSSCCCGGGT----------TTTCSC
T ss_pred CCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEe-CCC-eEEEEeCCCCCCCCCCcccccc----------ccccCc
Confidence 75433 2334444444332 4999999999999999 899 9999999999999988654311 012345
Q ss_pred eeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCC----CccceEEeeecccCCCCCCccEEEecCCc
Q 015016 221 RAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK----DEWVPRRVDVFQRNNVLPPEAVISAGSVN 296 (414)
Q Consensus 221 ~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~----~~~~p~~i~~~~~~~~~~~i~~i~~g~~~ 296 (414)
..+.. .+|++|+||..|+++|+++|+||+||.|.+||||.+... ....|+++..+... .|++|+||..|
T Consensus 252 ~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~~~~----~i~~ia~G~~h 324 (473)
T 3of7_A 252 RPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNV----VIRSIAAGEHH 324 (473)
T ss_dssp EECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCCTTC----CEEEEEECSSE
T ss_pred eecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccccccCCc----cEEEEEeCCCe
Confidence 44432 579999999999999999999999999999999998653 34678888765543 46799999999
Q ss_pred eEEEeCCCCEEEccCCCCCCCc--------------------eeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEec
Q 015016 297 SSCTAGGGQLYMWGKLKNNGDD--------------------WMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWG 355 (414)
Q Consensus 297 s~~l~~~g~v~~wG~~~~~~~~--------------------~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG 355 (414)
+++|+++|+||+||.|...+-. ...|.++..+. +|++|+||..|++|++ +|+||+||
T Consensus 325 s~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G~~hs~al~~~G~vy~wG 402 (473)
T 3of7_A 325 SLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAGSHHSVAVAQNGIAYSWG 402 (473)
T ss_dssp EEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEECSSEEEEEETTSCEEEEE
T ss_pred EEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeCCCeEEEEeCCCcEEEee
Confidence 9999999999999998743221 23456655443 7999999999999999 99999999
Q ss_pred CCCCCCccCCCCCCCCCCCCeeecc--CCCceEEEEEecCCceEEEEcc
Q 015016 356 HAQYGELGYGPYGQKSSAMPKKVDI--LEGMHVISVACGYGHSLVIVDR 402 (414)
Q Consensus 356 ~n~~gqlG~g~~~~~~~~~p~~v~~--~~~~~v~~v~~G~~~t~~l~~~ 402 (414)
.|.+||||.++. ......|++|+. +.+++|++|+||.+||+++..+
T Consensus 403 ~n~~GqLG~g~~-~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~~ 450 (473)
T 3of7_A 403 FGETYAVGLGPF-EDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGVK 450 (473)
T ss_dssp CCTTCTTCCCSC-CSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEEE
T ss_pred CCCCCCCCCCCC-CccccCCeEecccccCCCeEEEEeeCCCeEEEEEec
Confidence 999999999983 367788999984 5677999999999999999974
No 5
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=8.6e-66 Score=496.48 Aligned_cols=338 Identities=28% Similarity=0.509 Sum_probs=302.0
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCC-CEEEEeCCCCCCCcCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEG-RCYTWGRNERGQLGHGDK 95 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g-~vy~wG~n~~gqlG~~~~ 95 (414)
.++|+||+||.|.+||||.+. ......|.++..+.+.+|++|+|| ..|+++|+++| +||+||.|.+||||.++.
T Consensus 32 ~~~g~v~~wG~n~~GqLG~g~---~~~~~~P~~v~~l~~~~i~~va~G--~~ht~al~~~gg~v~~wG~n~~GqLG~g~~ 106 (406)
T 4d9s_A 32 LSGDIVCSWGRGEDGQLGHGD---AEDRPSPTQLSALDGHQIVSVTCG--ADHTVAYSQSGMEVYSWGWGDFGRLGHGNS 106 (406)
T ss_dssp ETTTEEEEEECCTTSTTCSSS---CCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTTTEEEEEECCGGGTTCSSSC
T ss_pred EeCCEEEEEeCCCCCCCCCCC---cccCcCCEEecccCCCCEEEEEeC--cceEEEEECCCCEEEEEcCCCCcCCCCCCC
Confidence 579999999999999999997 345688999999999999999999 89999999986 999999999999999998
Q ss_pred CCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCeeE
Q 015016 96 IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTV 174 (414)
Q Consensus 96 ~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~~ 174 (414)
.....|.+++.+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|.++..+.. +|++|+||.+|++
T Consensus 107 ~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G~~hs~ 186 (406)
T 4d9s_A 107 SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTA 186 (406)
T ss_dssp CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEE
T ss_pred CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecCCCeEE
Confidence 888899999998888999999999999999999999999999999999998777666666655433 6999999999999
Q ss_pred EEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEee
Q 015016 175 WLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWG 254 (414)
Q Consensus 175 ~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG 254 (414)
+|+ ++| +||+||.|.+||||.+.... ...|.++..+...+|++|+||.+|+++|+++|+||+||
T Consensus 187 alt-~~G-~v~~wG~n~~GqlG~g~~~~--------------~~~p~~v~~~~~~~i~~va~G~~ht~~l~~~G~v~~wG 250 (406)
T 4d9s_A 187 AVT-EDG-DLYGWGWGRYGNLGLGDRTD--------------RLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYG 250 (406)
T ss_dssp EEE-TTS-CEEEEECCTTSTTCSSSSCC--------------EEEEEECCCSTTCCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred EEe-CCC-CEEEeeCCCCCCCCCCCCCC--------------cCccEEecccCCceEEEEEECCCcEEEEcCCCCEEEee
Confidence 999 899 99999999999999987653 34577777777789999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCC------CceeeeeecccC
Q 015016 255 FGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG------DDWMYPKPLMDL 328 (414)
Q Consensus 255 ~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~------~~~~~p~~~~~~ 328 (414)
.|.+||||.+.......|.++..+... .|++|+||..|+++|+++|+||+||.|...+ .....|.++..+
T Consensus 251 ~n~~GqlG~g~~~~~~~p~~v~~~~~~----~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 326 (406)
T 4d9s_A 251 WSKYGQLGHGDLEDHLIPHKLEALSNS----FISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFP 326 (406)
T ss_dssp CCTTSTTCSSSCCCEEEEEECGGGTTS----CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCG
T ss_pred CCCCCCCCCCCCcCccccEEecccCCC----CEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEecc
Confidence 999999999998888899999876653 3569999999999999999999999987422 345678888777
Q ss_pred CCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCCCCCCCCCeeeccC
Q 015016 329 SGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYGQKSSAMPKKVDIL 381 (414)
Q Consensus 329 ~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~ 381 (414)
...+|++|+||.+|++|++ +|+||+||+|.+||||.++. .....|++|+.+
T Consensus 327 ~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~--~~~~~P~~v~~l 378 (406)
T 4d9s_A 327 DDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGES--VDRNFPKIIEAL 378 (406)
T ss_dssp GGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC--CCEEEEEECGGG
T ss_pred CCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCC--CCCcCCEEeeee
Confidence 7778999999999999999 99999999999999999997 667788888765
No 6
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=4.9e-64 Score=484.20 Aligned_cols=328 Identities=32% Similarity=0.586 Sum_probs=296.1
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCC-CEEE
Q 015016 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDG-NSLA 133 (414)
Q Consensus 55 ~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g-~vy~ 133 (414)
..+|++|++| ..|+++|+++|+||+||+|.+||||.++..+...|++++.+...+|++|+||..|+++|+++| +||+
T Consensus 15 ~~~v~~ia~G--~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~ 92 (406)
T 4d9s_A 15 PRKVLIISAG--ASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYS 92 (406)
T ss_dssp CCCEEEEEEC--SSEEEEEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEE
T ss_pred ccceEEEecC--CCeEEEEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEE
Confidence 4589999999 899999999999999999999999999999889999999888889999999999999999986 9999
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeeeecc-ceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccc
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVS-EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~-~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 212 (414)
||.|.+||||.+.......|.++..+.. +|++|+||.+|+++|+ ++| +||+||.|.+||||.+....
T Consensus 93 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt-~~G-~v~~wG~n~~GqLG~g~~~~---------- 160 (406)
T 4d9s_A 93 WGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVT-MEG-EVQSWGRNQNGQLGLGDTED---------- 160 (406)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEE-TTS-CEEEEECCTTSTTCSSSCCC----------
T ss_pred EcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEEEc-CCC-cEEEeCCCCCccCCCCCCCC----------
Confidence 9999999999988777667777665543 6999999999999999 899 99999999999999987653
Q ss_pred ccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEe
Q 015016 213 AYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISA 292 (414)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~ 292 (414)
...|.++..+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+... ++++|+|
T Consensus 161 ----~~~p~~v~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~----~i~~va~ 232 (406)
T 4d9s_A 161 ----SLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE----KMSMVAC 232 (406)
T ss_dssp ----EEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTC----CEEEEEE
T ss_pred ----cccceEecccCCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCc----eEEEEEE
Confidence 34677777777789999999999999999999999999999999999998888899998766543 4569999
Q ss_pred cCCceEEEeCCCCEEEccCCCCC------CCceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCC
Q 015016 293 GSVNSSCTAGGGQLYMWGKLKNN------GDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYG 365 (414)
Q Consensus 293 g~~~s~~l~~~g~v~~wG~~~~~------~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g 365 (414)
|..|+++|+++|+||+||.|... ......|.++..+.+.+|++|+||..|+++++ +|+||+||+|.+||||.+
T Consensus 233 G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g 312 (406)
T 4d9s_A 233 GWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVG 312 (406)
T ss_dssp CSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSS
T ss_pred CCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCC
Confidence 99999999999999999998742 24567899999888889999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCccc
Q 015016 366 PYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVG 406 (414)
Q Consensus 366 ~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~ 406 (414)
.. .....|+++..+...+|++|+||.+|+++|+++|++|
T Consensus 313 ~~--~~~~~p~~v~~~~~~~v~~va~G~~hs~alt~~G~v~ 351 (406)
T 4d9s_A 313 NN--LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTERNNVF 351 (406)
T ss_dssp SS--SCEEEEEEECCGGGCCEEEEEECSSEEEEEETTSCEE
T ss_pred CC--CCCccCEEEeccCCCcEEEEEeCCCeEEEEeCCCCEE
Confidence 87 6677899998777779999999999999999999985
No 7
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.3e-61 Score=463.24 Aligned_cols=323 Identities=28% Similarity=0.503 Sum_probs=274.8
Q ss_pred EEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCC
Q 015016 60 FVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKH 139 (414)
Q Consensus 60 ~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~ 139 (414)
++..- ..+.++|++||+||+||+|.+||||.++......|++++.+...+|++|+||..|+++|+++|+||+||.|.+
T Consensus 5 ~~~~~--~~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~ 82 (389)
T 3kci_A 5 HHHSS--GRENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAG 82 (389)
T ss_dssp ------------------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGG
T ss_pred ccccC--cccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCC
Confidence 44444 6789999999999999999999999988888889999988888899999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCcCeeeecc---ceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccccccc
Q 015016 140 GQLGSGSIRNEIEPSPVRCLVS---EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (414)
Q Consensus 140 gqlg~~~~~~~~~~~~~~~~~~---~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~ 216 (414)
||||.+.......|.++..+.. ++++|+||.+|+++|+ ++| +||+||.|.+||||.+....
T Consensus 83 GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~-~~G-~v~~wG~n~~GqLG~g~~~~-------------- 146 (389)
T 3kci_A 83 GRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALS-SEG-EVYSWGEAEDGKLGHGNRSP-------------- 146 (389)
T ss_dssp GTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEE-TTS-CEEEEECCGGGTTCSSSCCC--------------
T ss_pred CCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEc-CCC-CEEEEeCCCCCcCCCCCCcc--------------
Confidence 9999988766666665554332 3688999999999999 899 99999999999999987643
Q ss_pred CCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecC--
Q 015016 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGS-- 294 (414)
Q Consensus 217 ~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~-- 294 (414)
...|..+..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+... .+++|+||.
T Consensus 147 ~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~----~v~~ia~G~g~ 222 (389)
T 3kci_A 147 CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGH----RVVDIACGSGD 222 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTS----CEEEEEECCSS
T ss_pred CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCC----eEEEEEEcCCC
Confidence 34677787788789999999999999999999999999999999999998888899999877654 356999985
Q ss_pred CceEEEeCCCCEEEccCCCC------CCCceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCC
Q 015016 295 VNSSCTAGGGQLYMWGKLKN------NGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPY 367 (414)
Q Consensus 295 ~~s~~l~~~g~v~~wG~~~~------~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~ 367 (414)
.|+++|+++|+||+||.|.. .......|.++..+.+.+|++|+||..|+++++ +|+||+||+|.+||||.+..
T Consensus 223 ~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~ 302 (389)
T 3kci_A 223 AQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSD 302 (389)
T ss_dssp CEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSC
T ss_pred cEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCC
Confidence 89999999999999999873 224467899999888889999999999999999 99999999999999999987
Q ss_pred CCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCccc
Q 015016 368 GQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVG 406 (414)
Q Consensus 368 ~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~ 406 (414)
.....|++++.+.+.+|++|+||.+|+++++++|++|
T Consensus 303 --~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~G~v~ 339 (389)
T 3kci_A 303 --DHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVY 339 (389)
T ss_dssp --CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTCCEE
T ss_pred --ccccCCeEeccCCCCCEEEEEeccCeEEEECCCCCEE
Confidence 7778899999998889999999999999999999985
No 8
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-58 Score=446.34 Aligned_cols=321 Identities=23% Similarity=0.347 Sum_probs=264.4
Q ss_pred CCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCC-CCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEE
Q 015016 55 GVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDK-IQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLA 133 (414)
Q Consensus 55 ~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 133 (414)
..++++|++| ..|+++++++|+||+||.|.+||||.++. .....|++++.+. .|++|+||..|+++|+++|+||+
T Consensus 23 ~~~~~~ia~g--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~--~v~~va~G~~h~~~l~~~G~v~~ 98 (423)
T 3mvd_K 23 KAKRARIAFH--LELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIP--DAVDISAGGMHNLVLTKSGDIYS 98 (423)
T ss_dssp ------CCCC--CCCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCS--SEEEEEECSSEEEEEETTSCEEE
T ss_pred cceeeEEecC--CccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCC--CceEEeeCCCeEEEEeCCCeEEE
Confidence 3477889988 99999999999999999999999999965 3456788888765 48999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeee-eccceEEEEeCCCeeEEEecccCCeEEEecC--CCCCcccCCCCCCCcccCccc
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRC-LVSEVTATACGADFTVWLSSVEGASILNAGL--PQYGQLGHGTDNEYNTKDSSV 210 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~-~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~--n~~gqlG~~~~~~~~~~~~~~ 210 (414)
||.|.+||||.+.........|... +..+|++|+||.+|+++|+ ++| +||+||. |.+||||.+....
T Consensus 99 wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~-~~G-~v~~wG~~~n~~GqlG~~~~~~-------- 168 (423)
T 3mvd_K 99 FGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLL-EDG-RVFAWGSFRDSHGNMGLTIDGN-------- 168 (423)
T ss_dssp EECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEE-TTS-CEEEEECEECSSSEEESBTTBC--------
T ss_pred eECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEe-CCC-eEEEEeCCCCCCCCcCcCCCCC--------
Confidence 9999999999987765333344333 2457999999999999999 899 9999999 9999999876543
Q ss_pred ccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCC-----------CccceEEeeecc
Q 015016 211 KLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK-----------DEWVPRRVDVFQ 279 (414)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~-----------~~~~p~~i~~~~ 279 (414)
.+.|..+ +...+|++|+||..|+++|+++|+||+||.|.+||||..... ....|.++....
T Consensus 169 ------~~~p~~~--~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~ 240 (423)
T 3mvd_K 169 ------KRTPIDL--MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240 (423)
T ss_dssp ------EEEEEES--STTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTT
T ss_pred ------CceeeEe--cCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecC
Confidence 2334433 455689999999999999999999999999999999997542 345788877544
Q ss_pred cCCCCCCccEEEecCCceEEE-eCCCCEEEccCCCCCC--------CceeeeeecccCCCCceEEEecCCceEEEEe-CC
Q 015016 280 RNNVLPPEAVISAGSVNSSCT-AGGGQLYMWGKLKNNG--------DDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DS 349 (414)
Q Consensus 280 ~~~~~~~i~~i~~g~~~s~~l-~~~g~v~~wG~~~~~~--------~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g 349 (414)
.. ++++|+||..|++++ +++|+||+||.|...+ .....|.++. ..+|++|+||..|+++++ +|
T Consensus 241 ~~----~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht~alt~~G 313 (423)
T 3mvd_K 241 AK----PFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHTVILTTDL 313 (423)
T ss_dssp CC----CEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEEEEEETTC
T ss_pred Cc----cEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeEEEEeCCC
Confidence 32 467999999999999 6999999999987322 2234555544 347999999999999999 99
Q ss_pred CEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCccc
Q 015016 350 SCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVG 406 (414)
Q Consensus 350 ~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~ 406 (414)
+||+||+|.+||||.+.. ......|++++.+.. +|++|+||.+|+++|+++|++|
T Consensus 314 ~v~~wG~n~~GqLG~g~~-~~~~~~p~~v~~l~~-~v~~ia~G~~hs~alt~~G~v~ 368 (423)
T 3mvd_K 314 KCSVVGRPEYGRLGLGDV-KDVVEKPTIVKKLTE-KIVSVGCGEVCSYAVTIDGKLY 368 (423)
T ss_dssp CEEEEECCGGGTTCSSSC-CSCEEEEEECTTCCS-CEEEEEEETTEEEEEETTSCEE
T ss_pred cEEEEECCCCCCCCCCCc-cccccCceEeccCCC-CEEEEEcCCCeEEEEcCCCCEE
Confidence 999999999999999986 334568999988876 8999999999999999999985
No 9
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.7e-58 Score=445.76 Aligned_cols=322 Identities=26% Similarity=0.382 Sum_probs=265.8
Q ss_pred EEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCC-CCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCC
Q 015016 60 FVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQ-RDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 60 ~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~ 138 (414)
..+.+ ..|+++++++|+||+||.|.+||||+++... ...|++++.+ .+|++|+||..|+++|+++|+||+||.|.
T Consensus 12 ~~~~~--~~h~~~l~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~va~G~~hs~~l~~~G~v~~wG~n~ 87 (413)
T 1a12_A 12 SKKVK--VSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCND 87 (413)
T ss_dssp -CCCC--CCCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred hhhhc--cccceeecCCCcEEEEECCCCCcCCCCCCccccccceEccCC--CCeEEEEeCCCeEEEEcCCCCEEEEECCC
Confidence 44455 6799999999999999999999999998654 5678888764 57999999999999999999999999999
Q ss_pred CCCCCCCCCCC--cccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecC--CCCCcccCCCCCCCcccCccccccc
Q 015016 139 HGQLGSGSIRN--EIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGL--PQYGQLGHGTDNEYNTKDSSVKLAY 214 (414)
Q Consensus 139 ~gqlg~~~~~~--~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~--n~~gqlG~~~~~~~~~~~~~~~~~~ 214 (414)
+||||.+.... ...|.++. +..+|++|+||.+|+++|+ ++| +||+||. |.+||||.+....
T Consensus 88 ~GqLG~~~~~~~~~~~P~~v~-l~~~i~~va~G~~hs~alt-~~G-~v~~wG~~~n~~GqlG~~~~~~------------ 152 (413)
T 1a12_A 88 EGALGRDTSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALT-DDG-RVFLWGSFRDNNGVIGLLEPMK------------ 152 (413)
T ss_dssp TSTTCSCCCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEE-TTS-CEEEEECEEETTEEEESSBBTB------------
T ss_pred CCCCCCCCCCCccccCCeEec-CCCcEEEEecCCCeEEEEc-CCC-cEEEeeCCcCCCCccCcCCccc------------
Confidence 99999987643 33344442 3457999999999999999 899 9999999 9999999876542
Q ss_pred ccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCC-----------CccceEEeeeccc-CC
Q 015016 215 EAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQK-----------DEWVPRRVDVFQR-NN 282 (414)
Q Consensus 215 ~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~-----------~~~~p~~i~~~~~-~~ 282 (414)
....|.++ +...+|++|+||..|+++|+++|+||+||.|.+||||..... ....|+.+..... ..
T Consensus 153 -~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~ 229 (413)
T 1a12_A 153 -KSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229 (413)
T ss_dssp -CEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCC
T ss_pred -cccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeecccccc
Confidence 12235555 345689999999999999999999999999999999986432 1246665554321 01
Q ss_pred CCCCccEEEecCCceEEEeCCCCEEEccCCCCC------CCceeeeeecccCCC--CceEEEecCCceEEEEe-CCCEEE
Q 015016 283 VLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNN------GDDWMYPKPLMDLSG--WNLRCMDSGNMHHFVGA-DSSCIS 353 (414)
Q Consensus 283 ~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~------~~~~~~p~~~~~~~~--~~i~~i~~g~~h~~~l~-~g~vy~ 353 (414)
....|++|+||..|+++|+++|+||+||.|... ......|.++..+.+ .+|++|+||..|+++++ +|+||+
T Consensus 230 ~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~ 309 (413)
T 1a12_A 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309 (413)
T ss_dssp SBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEE
T ss_pred CCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEE
Confidence 223578999999999999999999999998732 234577998888776 67999999999999999 999999
Q ss_pred ecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCccc
Q 015016 354 WGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVG 406 (414)
Q Consensus 354 wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~ 406 (414)
||+|.+||||.+.. ......|++|+.+. +|++|+||.+|+++|+++|++|
T Consensus 310 wG~n~~GqLG~g~~-~~~~~~P~~v~~l~--~v~~v~~G~~hs~alt~~G~v~ 359 (413)
T 1a12_A 310 LGRAEYGRLGLGEG-AEEKSIPTLISRLP--AVSSVACGASVGYAVTKDGRVF 359 (413)
T ss_dssp EECCGGGTTCSCTT-CCCEEEEEECCSSS--SEEEEEECSSEEEEEETTSCEE
T ss_pred eeCCCCCccCCCCC-CccccCCEEecccC--ceeEEEECcceEEEEeCCCCEE
Confidence 99999999999854 35677899998876 7999999999999999999985
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-58 Score=451.42 Aligned_cols=325 Identities=23% Similarity=0.328 Sum_probs=267.2
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC---CCCCceeeccC--CCCcEEEEeecCCeEEEEEcCCCE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI---QRDRPTIVSEL--SKYKIKKAGAGRSHTVVVTEDGNS 131 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~---~~~~p~~v~~~--~~~~i~~i~~G~~~~~~lt~~g~v 131 (414)
.+...... ..|+++++++|+||+||.|.+||||.++.. ...+|++++.+ ...+|++|+||..|+++|+++|+|
T Consensus 11 ~~~~~~~~--~~h~~~~~~~g~v~~wG~n~~GqLG~G~~~~~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v 88 (473)
T 3of7_A 11 HIINAQED--YKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88 (473)
T ss_dssp TCCCCGGG--GHHHHCCSSCCEEEEEEECTTSTTCSCSCGGGGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCE
T ss_pred hhhhhccc--ccccccCCCCccEEEEcCCCCCccCCCCCcccccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeE
Confidence 34444555 789999999999999999999999999853 35678888766 467899999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCC-----------------------cccCcCeee--e-----ccceEEEEeCCCeeEEEecccC
Q 015016 132 LAFGWNKHGQLGSGSIRN-----------------------EIEPSPVRC--L-----VSEVTATACGADFTVWLSSVEG 181 (414)
Q Consensus 132 y~~G~n~~gqlg~~~~~~-----------------------~~~~~~~~~--~-----~~~i~~is~G~~~~~~l~~~~g 181 (414)
|+||.|.+||||.+.... ...|.+++. + ..+|++|+||.+|+++|+ ++|
T Consensus 89 ~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt-~~G 167 (473)
T 3of7_A 89 WSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALF-SNG 167 (473)
T ss_dssp EEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEE-TTS
T ss_pred EEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEe-CCC
Confidence 999999999999887544 234444443 3 256999999999999999 899
Q ss_pred CeEEEecC--CCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCC
Q 015016 182 ASILNAGL--PQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYG 259 (414)
Q Consensus 182 ~~v~~~G~--n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~g 259 (414)
+||+||. +..||||.+.... .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+|
T Consensus 168 -~vy~wG~n~~~~GqLG~~~~~~------------~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~G 234 (473)
T 3of7_A 168 -EVYAWGTFRCNEGILGFYQDKI------------KIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQN 234 (473)
T ss_dssp -CEEEEECEEETTEEEESBTTTB------------SCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTS
T ss_pred -eEEEeeCCcCCCCccCCCCCCC------------ccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCC
Confidence 9999998 6789999855431 134567888878778899999999999999999999999999999
Q ss_pred CcCCCCCCC----ccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCC----------Cceeeeeec
Q 015016 260 RLGHREQKD----EWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNG----------DDWMYPKPL 325 (414)
Q Consensus 260 qlg~~~~~~----~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~----------~~~~~p~~~ 325 (414)
|||.+.... ...|.++.. ..|++|+||..|+++|+++|+||+||.|...+ .....|.++
T Consensus 235 qLG~~~~~~~~~~~~~p~~~~~-------~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v 307 (473)
T 3of7_A 235 QLGRKVMERFRLKTLDPRPFGL-------RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRL 307 (473)
T ss_dssp TTSSCCCGGGTTTTCSCEECSC-------CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEEC
T ss_pred CCCCCccccccccccCceecCC-------cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeeccccc
Confidence 999986433 345666532 35779999999999999999999999987322 234678888
Q ss_pred ccCCCCceEEEecCCceEEEEe-CCCEEEecCCCCCCccCCCCC------------CCCCCCCeeeccCCCceEEEEEec
Q 015016 326 MDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQYGELGYGPYG------------QKSSAMPKKVDILEGMHVISVACG 392 (414)
Q Consensus 326 ~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~~gqlG~g~~~------------~~~~~~p~~v~~~~~~~v~~v~~G 392 (414)
..+.+.+|++|+||..|+++++ +|+||+||+|.+||||.+... ......|++++.+. +|++|+||
T Consensus 308 ~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~Ia~G 385 (473)
T 3of7_A 308 ALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKSVAAG 385 (473)
T ss_dssp CCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEEEEEC
T ss_pred cccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEEEEeC
Confidence 8888889999999999999999 999999999999999987531 11234566666554 69999999
Q ss_pred CCceEEEEccCccc
Q 015016 393 YGHSLVIVDRTNVG 406 (414)
Q Consensus 393 ~~~t~~l~~~g~v~ 406 (414)
.+|+++|+++|++|
T Consensus 386 ~~hs~al~~~G~vy 399 (473)
T 3of7_A 386 SHHSVAVAQNGIAY 399 (473)
T ss_dssp SSEEEEEETTSCEE
T ss_pred CCeEEEEeCCCcEE
Confidence 99999999999985
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.8e-52 Score=382.46 Aligned_cols=279 Identities=21% Similarity=0.315 Sum_probs=220.2
Q ss_pred eEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCC
Q 015016 21 ELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDR 100 (414)
Q Consensus 21 ~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~ 100 (414)
+||+||+|...++... | ++.+. +|++|++| ..|+++|+ +|+||+||.|.+||||.+
T Consensus 3 ~v~~WG~n~~~~~~~~----------p--~~~~~--~i~~ia~G--~~h~~~l~-~G~v~~wG~n~~Gqlg~p------- 58 (282)
T 3qhy_B 3 SVVAWGGNNDWGEATV----------P--AEAQS--GVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMP------- 58 (282)
T ss_dssp EEEEECSCCTTSTTCC----------C--GGGSS--SCCEEEEC--SSEEEEEE-TTEEEEEECCSSSTTSCC-------
T ss_pred EEEEeCCCCCcCcccC----------C--ccccC--CCcEEEeC--CCeEEEEE-CCEEEEEeCCCCCCCCCC-------
Confidence 5999999864433221 2 22232 78999999 89999998 999999999999999952
Q ss_pred ceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEeccc
Q 015016 101 PTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVE 180 (414)
Q Consensus 101 p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~ 180 (414)
.. ...+|++|+||..|+++|+ ||+||+||.|.+||||.+ .++ ..+|++|+||.+|+++|+ +
T Consensus 59 -~~----~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P--------~~~---~~~v~~ia~G~~hs~al~--~ 119 (282)
T 3qhy_B 59 -AA----TQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVP--------AEA---RSGVDAIAAGAWASYALK--D 119 (282)
T ss_dssp -GG----GGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCC--------GGG---SSSEEEEEEETTEEEEEE--T
T ss_pred -cc----CCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCC--------ccc---CCCeEEEECcCCEEEEEe--C
Confidence 21 1237999999999999996 999999999999999952 222 247999999999999999 8
Q ss_pred CCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCC
Q 015016 181 GASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGR 260 (414)
Q Consensus 181 g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gq 260 (414)
| +||+||.|.+||||... . ...+|++|+||..|+++++ +|+||+||.|.+||
T Consensus 120 G-~v~~wG~n~~gqlg~~~----------------------~----~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 120 G-KVIAWGDDSDGQTTVPA----------------------E----AQSGVTALDGGVYTALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp T-EEEEEECCTTSTTSCCG----------------------G----GGSSEEEEEECSSEEEEEE-TTEEEEEECCTTST
T ss_pred C-eEEEecCCCCCcCCCCc----------------------c----CCCCeEEEEcccCEEEEEE-CCEEEEecCCCCCC
Confidence 8 99999999999997311 1 1146999999999999999 89999999999999
Q ss_pred cCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCC
Q 015016 261 LGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGN 340 (414)
Q Consensus 261 lg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~ 340 (414)
||.. .++ ..+|++|+||..|+++| ++|+||+||.|...+... |. +.+ .+|++|+||.
T Consensus 172 lg~p--------~~~--------~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~--p~--~~~--~~v~~i~~G~ 228 (282)
T 3qhy_B 172 TTVP--------AEA--------QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTV--PT--EAL--SGVSAIASGE 228 (282)
T ss_dssp TSCC--------GGG--------GSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCC--CG--GGG--SSCCEEEECS
T ss_pred CCCc--------eec--------CCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCC--Cc--ccC--CCceEEEcCC
Confidence 9832 111 13567999999999999 899999999988655442 32 222 3699999999
Q ss_pred ceEEEEeCCCEEEecCCCCCCccCCCCCCCCCCCCeeeccCCCceEEEEEecCCceEEEEccCcccccccc
Q 015016 341 MHHFVGADSSCISWGHAQYGELGYGPYGQKSSAMPKKVDILEGMHVISVACGYGHSLVIVDRTNVGERLDQ 411 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~n~~gqlG~g~~~~~~~~~p~~v~~~~~~~v~~v~~G~~~t~~l~~~g~v~~~~~~ 411 (414)
.|++++++|+||+||+|+++|++.. ..|.+|+||..|+++|+++++.+++..+
T Consensus 229 ~h~~al~~g~v~~wG~n~~gq~~v~------------------~~v~~iaaG~~h~~al~~~~~~~~~~~~ 281 (282)
T 3qhy_B 229 WYSLALKNGKVIAWGSSRTAPSSVQ------------------SGVSSIEAGPNAAYALKGGSGSGHHHHH 281 (282)
T ss_dssp SCEEEEETTEEEEESTTCCCCGGGS------------------SCEEEEEECSSCEEEEEC----------
T ss_pred CEEEEEECCEEEEecCCCCccccCC------------------CCcEEEEECcCeEEEEecCCCCCccCCC
Confidence 9999999999999999999998741 1488999999999999999998776543
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=3.6e-45 Score=334.10 Aligned_cols=234 Identities=24% Similarity=0.368 Sum_probs=192.9
Q ss_pred CceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCC
Q 015016 19 GGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQR 98 (414)
Q Consensus 19 ~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~ 98 (414)
||+||+||.|.+||||.+. . ...+|++|++| ..|+++|+ +|+||+||.|.+||||.
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~-----------~----~~~~i~~ia~G--~~hs~~l~-~G~v~~wG~n~~Gqlg~------ 96 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPA-----------A----TQSGVDAIAAG--NYHSLALK-DGEVIAWGGNEDGQTTV------ 96 (282)
T ss_dssp TTEEEEEECCSSSTTSCCG-----------G----GGSCCCEEEEC--SSEEEEEE-TTEEEEEECCTTSTTCC------
T ss_pred CCEEEEEeCCCCCCCCCCc-----------c----CCCCEEEEEeC--CCEEEEEE-CCEEEEeeCCCCCCCCC------
Confidence 8999999999999999642 1 12278999999 89999997 99999999999999985
Q ss_pred CCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEec
Q 015016 99 DRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSS 178 (414)
Q Consensus 99 ~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~ 178 (414)
|.++. .+|++|+||..|+++|+ +|+||+||.|.++|||.+. + ...+|++|+||.+|+++|+
T Consensus 97 --P~~~~----~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~--------~---~~~~i~~i~~G~~~~~~l~- 157 (282)
T 3qhy_B 97 --PAEAR----SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPA--------E---AQSGVTALDGGVYTALAVK- 157 (282)
T ss_dssp --CGGGS----SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCG--------G---GGSSEEEEEECSSEEEEEE-
T ss_pred --CcccC----CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCc--------c---CCCCeEEEEcccCEEEEEE-
Confidence 44442 37999999999999999 9999999999999998421 1 2356999999999999998
Q ss_pred ccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCC
Q 015016 179 VEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGY 258 (414)
Q Consensus 179 ~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~ 258 (414)
+| +||+||.|.+||||. |..+ ..+|++|+||..|+++| ++|+||+||.|.+
T Consensus 158 -~G-~v~~wG~n~~gqlg~----------------------p~~~----~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 158 -NG-GVIAWGDNYFGQTTV----------------------PAEA----QSGVDDVAGGIFHSLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp -TT-EEEEEECCTTSTTSC----------------------CGGG----GSSEEEEEECSSEEEEE-ETTEEEEEECCTT
T ss_pred -CC-EEEEecCCCCCCCCC----------------------ceec----CCCeEEEEecCCEEEEE-ECCeEEEEECCCC
Confidence 68 999999999999973 1111 24799999999999999 8999999999999
Q ss_pred CCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEec
Q 015016 259 GRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS 338 (414)
Q Consensus 259 gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~ 338 (414)
||||.... ....|++|+||..|+++++ +|+||+||.|...+ ..+ +. .|++|++
T Consensus 209 gqlg~p~~----------------~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq------~~v--~~--~v~~iaa 261 (282)
T 3qhy_B 209 KQTTVPTE----------------ALSGVSAIASGEWYSLALK-NGKVIAWGSSRTAP------SSV--QS--GVSSIEA 261 (282)
T ss_dssp STTCCCGG----------------GGSSCCEEEECSSCEEEEE-TTEEEEESTTCCCC------GGG--SS--CEEEEEE
T ss_pred CCCCCCcc----------------cCCCceEEEcCCCEEEEEE-CCEEEEecCCCCcc------ccC--CC--CcEEEEE
Confidence 99995321 1234679999999999999 99999999987532 222 22 6999999
Q ss_pred CCceEEEEe-CCCE
Q 015016 339 GNMHHFVGA-DSSC 351 (414)
Q Consensus 339 g~~h~~~l~-~g~v 351 (414)
|..|+++|+ +++.
T Consensus 262 G~~h~~al~~~~~~ 275 (282)
T 3qhy_B 262 GPNAAYALKGGSGS 275 (282)
T ss_dssp CSSCEEEEEC----
T ss_pred CcCeEEEEecCCCC
Confidence 999999999 5443
No 13
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.14 E-value=2.2 Score=40.04 Aligned_cols=237 Identities=8% Similarity=0.030 Sum_probs=124.0
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G 135 (414)
..|..++.. ....+.-..||.|..|-....-. ...+. .....|..++......+.-+.||.|..|-
T Consensus 174 ~~v~~l~~~--~~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd 239 (435)
T 1p22_A 174 GSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEM-----------LNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWD 239 (435)
T ss_dssp SCEEEEECC--SSEEEEEETTSCEEEEESSSCCE-----------EEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEE
T ss_pred CcEEEEEEC--CCEEEEEcCCCeEEEEECCCCcE-----------EEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEe
Confidence 367777764 56666778889999997543211 11111 12346788887777888888999999997
Q ss_pred cCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccc
Q 015016 136 WNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYE 215 (414)
Q Consensus 136 ~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~ 215 (414)
......+ ............|..++......+.-. .+| .|..|-..+...
T Consensus 240 ~~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg-~i~vwd~~~~~~--------------------- 288 (435)
T 1p22_A 240 MASPTDI--------TLRRVLVGHRAAVNVVDFDDKYIVSAS-GDR-TIKVWNTSTCEF--------------------- 288 (435)
T ss_dssp CSSSSCC--------EEEEEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETTTCCE---------------------
T ss_pred CCCCCCc--------eeeeEecCCCCcEEEEEeCCCEEEEEe-CCC-eEEEEECCcCcE---------------------
Confidence 5332111 000011111234666666444444444 677 888885432100
Q ss_pred cCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCC
Q 015016 216 AQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV 295 (414)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~ 295 (414)
...+.. ....|..++......++-..+|.|..|-.... ..+..+.. ....+..++....
T Consensus 289 ----~~~~~~-~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~--h~~~v~~~~~~~~ 347 (435)
T 1p22_A 289 ----VRTLNG-HKRGIACLQYRDRLVVSGSSDNTIRLWDIECG--------------ACLRVLEG--HEELVRCIRFDNK 347 (435)
T ss_dssp ----EEEEEC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTC--------------CEEEEECC--CSSCEEEEECCSS
T ss_pred ----EEEEcC-CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC--------------CEEEEEeC--CcCcEEEEEecCC
Confidence 001111 12356677766666777778999999965331 11111111 1123446666556
Q ss_pred ceEEEeCCCCEEEccCCCCCCC---ceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCCC
Q 015016 296 NSSCTAGGGQLYMWGKLKNNGD---DWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHAQ 358 (414)
Q Consensus 296 ~s~~l~~~g~v~~wG~~~~~~~---~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n~ 358 (414)
..+.-..+|.|..|-....... ....+..........|..++....+.+... ||.|..|-...
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC---
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCC
Confidence 6666678999999964221100 000011111111224666666444444444 89999996544
No 14
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.91 E-value=0.07 Score=45.62 Aligned_cols=84 Identities=26% Similarity=0.342 Sum_probs=60.7
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEc
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~ 136 (414)
.|-.|+-- ..|..++--|++|+.+|+|+.||+-.+.. .....++.+|..+++-+..-..+-.||.
T Consensus 310 ~i~~VsG~--y~H~vvi~gd~el~sFG~~sNGQ~~ip~t-------------agPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 310 PIGGVSGL--YTHYTVMYGDGQIAFFGNNDNGQCDVDDH-------------AGPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp CCCCCBCS--SSEEEC-CTTTCCCEEECCTTSTTCCCGG-------------GCCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred cccccccc--ccceEEEecCceeEEeccCCCCceecCCC-------------cchHHhHhccCCeEEEEeceeeEEEecC
Confidence 44556644 78999999999999999999999754322 2358899999999999999999999996
Q ss_pred CCCCC-C--CCCCCCCcccCcC
Q 015016 137 NKHGQ-L--GSGSIRNEIEPSP 155 (414)
Q Consensus 137 n~~gq-l--g~~~~~~~~~~~~ 155 (414)
....- | |.++......|+|
T Consensus 375 SPDNSLLwnGr~t~~~~~~~~~ 396 (400)
T 4gbf_A 375 SPDNSLLWNGRGTRVKHIEPTP 396 (400)
T ss_dssp CTTSTTCCTTCCSBCCCCCCCC
T ss_pred CCCcceeecCccceeeeccCCC
Confidence 54433 3 3333333444444
No 15
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=94.72 E-value=0.031 Score=47.78 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=57.2
Q ss_pred CcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEE
Q 015016 229 ETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYM 308 (414)
Q Consensus 229 ~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~ 308 (414)
..|.+|+....|.+++-.+++++.+|+++.|||-.....- +...+.+|..+++-+..-+.+-.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~tag-----------------Pfla~~AG~~fTVTVn~~nyv~F 371 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHAG-----------------PYIQLAAGHNFTVTVNTLNQVMF 371 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGGC-----------------CEEEEEECSSEEEEEETTCCEEE
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCCCcc-----------------hHHhHhccCCeEEEEeceeeEEE
Confidence 4688999999999999999999999999999998754321 12379999999999999999999
Q ss_pred ccCCC
Q 015016 309 WGKLK 313 (414)
Q Consensus 309 wG~~~ 313 (414)
||...
T Consensus 372 WGDSP 376 (400)
T 4gbf_A 372 WGDSP 376 (400)
T ss_dssp EECCT
T ss_pred ecCCC
Confidence 99854
No 16
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=92.97 E-value=5.9 Score=37.00 Aligned_cols=234 Identities=9% Similarity=-0.008 Sum_probs=116.8
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEc
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~ 136 (414)
.|..++.. ....+.-..||.|+.|-....-. ...+. .....|..++......+.-+.||.|..|-.
T Consensus 201 ~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~-----------~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~ 266 (445)
T 2ovr_B 201 TVRCMHLH--EKRVVSGSRDATLRVWDIETGQC-----------LHVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 266 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSEEEEEESSSCCE-----------EEEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred cEEEEEec--CCEEEEEeCCCEEEEEECCCCcE-----------EEEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEEC
Confidence 45555554 45556666777777776432110 01111 123356677766677777778888888864
Q ss_pred CCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccccccc
Q 015016 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (414)
Q Consensus 137 n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~ 216 (414)
..... ..........|..++....+.+.-. .+| .|..|-..+...+
T Consensus 267 ~~~~~-----------~~~~~~~~~~v~~~~~~~~~l~~~~-~d~-~i~i~d~~~~~~~--------------------- 312 (445)
T 2ovr_B 267 ETETC-----------LHTLQGHTNRVYSLQFDGIHVVSGS-LDT-SIRVWDVETGNCI--------------------- 312 (445)
T ss_dssp GGTEE-----------EEEECCCSSCEEEEEECSSEEEEEE-TTS-CEEEEETTTCCEE---------------------
T ss_pred CCCcE-----------eEEecCCCCceEEEEECCCEEEEEe-CCC-eEEEEECCCCCEE---------------------
Confidence 32110 0011111234666666444433333 677 8888854321100
Q ss_pred CCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeeccc-CCCCCCccEEEecCC
Q 015016 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQR-NNVLPPEAVISAGSV 295 (414)
Q Consensus 217 ~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~-~~~~~~i~~i~~g~~ 295 (414)
..+. .....+..++......++-..+|.|..|-.... ..+..+.. ......+..++....
T Consensus 313 ----~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~--------------~~~~~~~~~~~~~~~v~~~~~~~~ 373 (445)
T 2ovr_B 313 ----HTLT-GHQSLTSGMELKDNILVSGNADSTVKIWDIKTG--------------QCLQTLQGPNKHQSAVTCLQFNKN 373 (445)
T ss_dssp ----EEEC-CCCSCEEEEEEETTEEEEEETTSCEEEEETTTC--------------CEEEEECSTTSCSSCEEEEEECSS
T ss_pred ----EEEc-CCcccEEEEEEeCCEEEEEeCCCeEEEEECCCC--------------cEEEEEccCCCCCCCEEEEEECCC
Confidence 0011 111245566666666666778999999954321 11111111 111224456666666
Q ss_pred ceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEE-EEe--CCC----EEEecCCC
Q 015016 296 NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHF-VGA--DSS----CISWGHAQ 358 (414)
Q Consensus 296 ~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~-~l~--~g~----vy~wG~n~ 358 (414)
+.+.-..+|.|..|-......... ............|..++......+ +.. ||. |++|=.+.
T Consensus 374 ~l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 374 FVITSSDDGTVKLWDLKTGEFIRN-LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEE-EEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEEEeCCCeEEEEECCCCceeee-eeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 666777899999996432211000 000011122335666666554433 333 665 66664443
No 17
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=92.69 E-value=5.3 Score=35.70 Aligned_cols=271 Identities=10% Similarity=-0.017 Sum_probs=118.5
Q ss_pred CCeEEEEEcCC----CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec---CCeEEEEEcC
Q 015016 56 VDIRFVAAGCV----SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTED 128 (414)
Q Consensus 56 ~~i~~i~~g~~----~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~ 128 (414)
..|..++.... ....+.-..||.|..|-.... + ....+.. ....|..++.. ....+.-..|
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~----------~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-Q----------CIKHYVG-HGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-C----------EEEEEES-CCSCEEEEEECSSCTTEEEEEETT
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-e----------EeeeecC-CCCcEEEEEECCCCCCEEEEEeCC
Confidence 35666666532 124555567888999964321 1 1111221 23457777664 3556666789
Q ss_pred CCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCee-EEEecccCCeEEEecCCCCCccc-------CCCC
Q 015016 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLG-------HGTD 200 (414)
Q Consensus 129 g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~-~~l~~~~g~~v~~~G~n~~gqlG-------~~~~ 200 (414)
|.|+.|-......+. ...........|..++...+.. ++....+| .|..|-......+. ....
T Consensus 138 g~i~iwd~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~ 208 (366)
T 3k26_A 138 HALRLWNIQTDTLVA--------IFGGVEGHRDEVLSADYDLLGEKIMSCGMDH-SLKLWRINSKRMMNAIKESYDYNPN 208 (366)
T ss_dssp SCEEEEETTTTEEEE--------EECSTTSCSSCEEEEEECTTSSEEEEEETTS-CEEEEESCSHHHHHHHHHHHTCCGG
T ss_pred CeEEEEEeecCeEEE--------EecccccccCceeEEEECCCCCEEEEecCCC-CEEEEECCCCccccccceeEEecCC
Confidence 999999754321100 0000011223466666543332 33332566 88888554321110 0000
Q ss_pred CCCcccCcccccccccCCCc-eeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecc
Q 015016 201 NEYNTKDSSVKLAYEAQPRP-RAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQ 279 (414)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~ 279 (414)
.... .........+ ..........|..++......+.-..+|.|..|-.....+.-............+..+.
T Consensus 209 ~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 209 KTNR------PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp GCSS------CCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred CCcc------cccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 0000 0000000000 00000112345555555556666678899999975443221111111111122222222
Q ss_pred cCCCCCCccEE--Eec--CCceEEEeCCCCEEEccCCCCCCCceeeeeecccC-CCCceEEEecCCc--eEEEEe-CCCE
Q 015016 280 RNNVLPPEAVI--SAG--SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDL-SGWNLRCMDSGNM--HHFVGA-DSSC 351 (414)
Q Consensus 280 ~~~~~~~i~~i--~~g--~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~-~~~~i~~i~~g~~--h~~~l~-~g~v 351 (414)
... ..+..+ ... ....++-..+|.|+.|-......... ....+... ....|..+....+ ..+.-. ||.|
T Consensus 283 ~~~--~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 283 YSQ--CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKA-KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp CSS--CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGC-EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ccC--CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccc-cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEE
Confidence 111 112222 222 34455557789999996543211110 11112211 1245777765533 333333 8899
Q ss_pred EEecC
Q 015016 352 ISWGH 356 (414)
Q Consensus 352 y~wG~ 356 (414)
+.|-.
T Consensus 360 ~iwd~ 364 (366)
T 3k26_A 360 WRWDR 364 (366)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99843
No 18
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.46 E-value=6.9 Score=36.48 Aligned_cols=228 Identities=11% Similarity=0.079 Sum_probs=124.7
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEc
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGW 136 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~ 136 (414)
.|..++.. ..+.+.-..||.|..|-.... + ....+.. ....|..++......+.-+.||.|.+|-.
T Consensus 135 ~v~~~~~d--~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v~~l~~~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTL-E----------CKRILTG-HTGSVLCLQYDERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp CEEEEECC--SSEEEEEESSSCEEEEESSSC-C----------EEEEECC-CSSCEEEEECCSSEEEEEETTSCEEEEES
T ss_pred cEEEEEEC--CCEEEEEeCCCeEEEEeCCCC-e----------EEEEEcC-CCCcEEEEEECCCEEEEEcCCCeEEEEEC
Confidence 45556554 566667778899999964321 1 1111221 23467888876667777788999999975
Q ss_pred CCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccccccc
Q 015016 137 NKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEA 216 (414)
Q Consensus 137 n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~ 216 (414)
.....+ .........|..++......+.-. .+| .|..|-......+
T Consensus 201 ~~~~~~-----------~~~~~h~~~v~~l~~~~~~l~s~s-~dg-~i~vwd~~~~~~~--------------------- 246 (435)
T 1p22_A 201 NTGEML-----------NTLIHHCEAVLHLRFNNGMMVTCS-KDR-SIAVWDMASPTDI--------------------- 246 (435)
T ss_dssp SSCCEE-----------EEECCCCSCEEEEECCTTEEEEEE-TTS-CEEEEECSSSSCC---------------------
T ss_pred CCCcEE-----------EEEcCCCCcEEEEEEcCCEEEEee-CCC-cEEEEeCCCCCCc---------------------
Confidence 432110 011112234677766555444444 677 8888854321100
Q ss_pred CCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCc
Q 015016 217 QPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVN 296 (414)
Q Consensus 217 ~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~ 296 (414)
.......-....|..++....+.++-..+|.|..|-.... ..+..+.. ....+..++.....
T Consensus 247 --~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~--------------~~~~~~~~--~~~~v~~~~~~~~~ 308 (435)
T 1p22_A 247 --TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC--------------EFVRTLNG--HKRGIACLQYRDRL 308 (435)
T ss_dssp --EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEEC--CSSCEEEEEEETTE
T ss_pred --eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC--------------cEEEEEcC--CCCcEEEEEeCCCE
Confidence 0001111112357777776666777778999999954321 11111111 11234456555666
Q ss_pred eEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecC
Q 015016 297 SSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGH 356 (414)
Q Consensus 297 s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~ 356 (414)
.+.-..+|.|..|-.... .+..........|..++....+.+.-. ||.|..|-.
T Consensus 309 l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 309 VVSGSSDNTIRLWDIECG------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred EEEEeCCCeEEEEECCCC------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEEC
Confidence 666778999999965321 111111112235777777555544444 899999964
No 19
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=92.24 E-value=10 Score=37.89 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=35.6
Q ss_pred CceEEEeCCCCEEEccCCCCC----CCceeeeeecccCCCCceEEEe----cCCceEEEEe--CCCEEEecCCCCCC
Q 015016 295 VNSSCTAGGGQLYMWGKLKNN----GDDWMYPKPLMDLSGWNLRCMD----SGNMHHFVGA--DSSCISWGHAQYGE 361 (414)
Q Consensus 295 ~~s~~l~~~g~v~~wG~~~~~----~~~~~~p~~~~~~~~~~i~~i~----~g~~h~~~l~--~g~vy~wG~n~~gq 361 (414)
.+++++..+|+||+.|-.... ......-..+..+...+...+. .-..|+.++. ||+||+.|.+.++.
T Consensus 458 ~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~ 534 (656)
T 1k3i_A 458 FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534 (656)
T ss_dssp SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTT
T ss_pred cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCC
Confidence 466677779999999853211 0010111111111222333332 1235765544 99999999987653
No 20
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=90.67 E-value=7.8 Score=33.62 Aligned_cols=230 Identities=8% Similarity=-0.007 Sum_probs=113.3
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G 135 (414)
..|..++......+.+.-..+|.+..|--..... ..+..........|..++......+.-+.+|.|+.|-
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG---------EDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT---------SCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC---------CCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc
Confidence 3566666655455666667778888776433110 0111111112346777877777778888899999995
Q ss_pred cCCCCCCCCCCCCCcccCcCeeeeccceEEEEe---CCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccc
Q 015016 136 WNKHGQLGSGSIRNEIEPSPVRCLVSEVTATAC---GADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (414)
Q Consensus 136 ~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~---G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 212 (414)
.. + ...........+..+.. .....+... .+| .|..|-...
T Consensus 131 ~~---~----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~-~i~i~d~~~--------------------- 174 (313)
T 3odt_A 131 EG---S----------LVYNLQAHNASVWDAKVVSFSENKFLTAS-ADK-TIKLWQNDK--------------------- 174 (313)
T ss_dssp TT---E----------EEEEEECCSSCEEEEEEEETTTTEEEEEE-TTS-CEEEEETTE---------------------
T ss_pred CC---c----------EEEecccCCCceeEEEEccCCCCEEEEEE-CCC-CEEEEecCc---------------------
Confidence 11 0 00111111223444433 233333333 566 888883110
Q ss_pred ccccCCCceeecccCCCcEEEEEccCC-ceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEE
Q 015016 213 AYEAQPRPRAIAALAGETIVKVACGTN-HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVIS 291 (414)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~i~~I~~g~~-~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~ 291 (414)
....+.......|..++.... ..++-..+|.|+.|-.... ..+..+.. ....+..++
T Consensus 175 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~~~--~~~~i~~~~ 232 (313)
T 3odt_A 175 ------VIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTYEG--HESFVYCIK 232 (313)
T ss_dssp ------EEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEEEC--CSSCEEEEE
T ss_pred ------eEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhhhc--CCceEEEEE
Confidence 000111111234555544322 2455568889999954321 11111111 112344554
Q ss_pred ecCC-ceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCc-eEEEEe-CCCEEEecCCC
Q 015016 292 AGSV-NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM-HHFVGA-DSSCISWGHAQ 358 (414)
Q Consensus 292 ~g~~-~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~-h~~~l~-~g~vy~wG~n~ 358 (414)
.... ..++-..+|.|+.|-.... .+..........|..+....+ ..++.. ||.|+.|-...
T Consensus 233 ~~~~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~ 296 (313)
T 3odt_A 233 LLPNGDIVSCGEDRTVRIWSKENG------SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK 296 (313)
T ss_dssp ECTTSCEEEEETTSEEEEECTTTC------CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred EecCCCEEEEecCCEEEEEECCCC------ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence 4333 4555677899999964322 111122222335777765544 333333 89999996543
No 21
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=89.66 E-value=6.3 Score=39.43 Aligned_cols=18 Identities=28% Similarity=0.446 Sum_probs=14.8
Q ss_pred CceEEEEeCCCCEEEEeC
Q 015016 67 SCHCVAVDVEGRCYTWGR 84 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~ 84 (414)
..|++++..+|+||++|-
T Consensus 288 ~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 288 GYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SSCEEEECTTSCEEEECC
T ss_pred cccceEEecCCeEEEEeC
Confidence 457777777999999996
No 22
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=89.37 E-value=14 Score=34.44 Aligned_cols=225 Identities=9% Similarity=-0.013 Sum_probs=121.2
Q ss_pred eEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEEcC
Q 015016 58 IRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 58 i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n 137 (414)
+..++.. ....+.-..||.|..|-....-. ...+.. ....|..++......+.-..||.|..|-..
T Consensus 122 ~~~~~~~--g~~l~sg~~dg~i~vwd~~~~~~-----------~~~~~~-h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKC-----------LRTLVG-HTGGVWSSQMRDNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTCCE-----------EEECCC-CSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEEEEc--CCEEEEEECCCcEEEEECCCCcE-----------EEEEcC-CCCCEEEEEecCCEEEEEeCCCeEEEEECC
Confidence 4445544 45666677889999997543111 111111 123577777767777778889999999753
Q ss_pred CCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccC
Q 015016 138 KHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQ 217 (414)
Q Consensus 138 ~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~ 217 (414)
....+ .........|..++......+.-. .+| .|..|-......+
T Consensus 188 ~~~~~-----------~~~~~h~~~v~~~~~~~~~l~s~s-~dg-~i~~wd~~~~~~~---------------------- 232 (445)
T 2ovr_B 188 TGECI-----------HTLYGHTSTVRCMHLHEKRVVSGS-RDA-TLRVWDIETGQCL---------------------- 232 (445)
T ss_dssp TTEEE-----------EEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEESSSCCEE----------------------
T ss_pred cCcEE-----------EEECCCCCcEEEEEecCCEEEEEe-CCC-EEEEEECCCCcEE----------------------
Confidence 32110 011111233666665555544444 677 8988854321000
Q ss_pred CCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCce
Q 015016 218 PRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNS 297 (414)
Q Consensus 218 ~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s 297 (414)
..+. .....|..++......++-..+|.|+.|-... ...+..+.. ....+..+.....+.
T Consensus 233 ---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~--~~~~v~~~~~~~~~l 292 (445)
T 2ovr_B 233 ---HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHTLQG--HTNRVYSLQFDGIHV 292 (445)
T ss_dssp ---EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEEECC--CSSCEEEEEECSSEE
T ss_pred ---EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEEecC--CCCceEEEEECCCEE
Confidence 0111 11235667776666666777899999995322 111222221 112344666655666
Q ss_pred EEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEEEe-CCCEEEecCC
Q 015016 298 SCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA-DSSCISWGHA 357 (414)
Q Consensus 298 ~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~-~g~vy~wG~n 357 (414)
+.-..+|.+..|-..... +..........+..+.......++-. ||.|..|-..
T Consensus 293 ~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 293 VSGSLDTSIRVWDVETGN------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEETTSCEEEEETTTCC------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEeCCCeEEEEECCCCC------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 666789999999643211 11111112224666666555555555 8999999643
No 23
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=88.94 E-value=12 Score=33.22 Aligned_cols=153 Identities=8% Similarity=-0.020 Sum_probs=83.7
Q ss_pred CCCCeEEEEEcCCC---ceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcC
Q 015016 54 VGVDIRFVAAGCVS---CHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTED 128 (414)
Q Consensus 54 ~~~~i~~i~~g~~~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~ 128 (414)
....|..++..... .+.+.-..||.|..|-....++. ....+.. ....|..++.. ..+.+.-+.|
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQM-HTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence 44578888887432 45555577899999986542211 1112221 23356666654 3455666788
Q ss_pred CCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEe--C-CCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcc
Q 015016 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATAC--G-ADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNT 205 (414)
Q Consensus 129 g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~--G-~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~ 205 (414)
|.|..|-..... ..........|..++. . ....++....+| .|+.|-......
T Consensus 108 g~v~iwd~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~----------- 163 (368)
T 3mmy_A 108 KTAKMWDLSSNQ------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDK-TLKFWDTRSSNP----------- 163 (368)
T ss_dssp SEEEEEETTTTE------------EEEEEECSSCEEEEEEEECSSCEEEEEEETTS-EEEEECSSCSSC-----------
T ss_pred CcEEEEEcCCCC------------ceeeccccCceEEEEEEeCCCCCEEEEccCCC-cEEEEECCCCcE-----------
Confidence 999999754321 1112222344677664 3 333344443567 899885432100
Q ss_pred cCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCC
Q 015016 206 KDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFG 256 (414)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n 256 (414)
...+. ....+..+..-....++.+.++.+..|-..
T Consensus 164 --------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 --------------MMVLQ--LPERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp --------------SEEEE--CSSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred --------------EEEEe--cCCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 00111 112455555556677777888899988654
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=88.49 E-value=18 Score=36.42 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.3
Q ss_pred CCeEEEEEc-CCCEEEEEc
Q 015016 119 RSHTVVVTE-DGNSLAFGW 136 (414)
Q Consensus 119 ~~~~~~lt~-~g~vy~~G~ 136 (414)
..|+++... +|+||++|-
T Consensus 441 ~~hs~~~~~~~~~lyv~GG 459 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGG 459 (695)
T ss_dssp BSCEEEEETTTTEEEEECC
T ss_pred cceEEEEEccCCEEEEEcC
Confidence 368888776 889999984
No 25
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=86.81 E-value=28 Score=35.03 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=14.9
Q ss_pred cCCceEEEeCCCCEEEeeCC
Q 015016 237 GTNHTVAVDSKGYVYTWGFG 256 (414)
Q Consensus 237 g~~~~~~lt~~G~vy~wG~n 256 (414)
-..|++++..+++||.+|-.
T Consensus 490 R~~h~~~~~~~~~iyv~GG~ 509 (695)
T 2zwa_A 490 RFRHSACSLPDGNVLILGGV 509 (695)
T ss_dssp CBSCEEEECTTSCEEEECCB
T ss_pred cccceEEEEcCCEEEEECCC
Confidence 35677777668899999843
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.04 E-value=17 Score=31.77 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecC-CeEEEEEcCCCEEEEEcCCCCCCCCC
Q 015016 67 SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR-SHTVVVTEDGNSLAFGWNKHGQLGSG 145 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~~~~lt~~g~vy~~G~n~~gqlg~~ 145 (414)
.-.+++++.||++++++......+...... ...+..... ....|..++... ...++...+|.|..|-........
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~-- 86 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPR-HARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKS-- 86 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCS-EEEEEEEEC-CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCS--
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCC-ccccceecc-CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCcee--
Confidence 456788999999998886554332211111 111111111 123455555432 223344448888888754321110
Q ss_pred CCCCcccCcCee--eeccceEEEEeCCCee-EEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCcee
Q 015016 146 SIRNEIEPSPVR--CLVSEVTATACGADFT-VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRA 222 (414)
Q Consensus 146 ~~~~~~~~~~~~--~~~~~i~~is~G~~~~-~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (414)
...... .....|..++...+.. ++....+| .|+.|-..... .....
T Consensus 87 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~------------------------~~~~~ 135 (337)
T 1gxr_A 87 ------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-TLSIWDLAAPT------------------------PRIKA 135 (337)
T ss_dssp ------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-EEEEEECCCC--------------------------EEEE
T ss_pred ------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-cEEEEECCCCC------------------------cceee
Confidence 000000 1123366665554433 33332566 88888543210 00000
Q ss_pred ecccCCCcEEEEEccC--CceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEec--CCceE
Q 015016 223 IAALAGETIVKVACGT--NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAG--SVNSS 298 (414)
Q Consensus 223 ~~~~~~~~i~~I~~g~--~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g--~~~s~ 298 (414)
........|..++... .+.++-..+|.|+.|-.... ..+..+.. ....+..++.. ....+
T Consensus 136 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~--~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQG--HTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECC--CSSCEEEEEECTTSSEEE
T ss_pred ecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeec--ccCceEEEEECCCCCEEE
Confidence 0011123455555443 34445567889999954321 11111111 11123345443 23344
Q ss_pred EEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecC--CceEEEEe-CCCEEEecCCC
Q 015016 299 CTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSG--NMHHFVGA-DSSCISWGHAQ 358 (414)
Q Consensus 299 ~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~h~~~l~-~g~vy~wG~n~ 358 (414)
.-..+|.++.|-.... . +...... ...+..+... ....++-. ++.++.|-...
T Consensus 200 ~~~~dg~i~~~d~~~~----~--~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREG----R--QLQQHDF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp EEETTSEEEEEETTTT----E--EEEEEEC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred EEecCCcEEEEECCCC----c--eEeeecC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 5567889999964321 1 1111111 2245555543 22333333 78888885443
No 27
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=86.02 E-value=4.7 Score=36.59 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=12.4
Q ss_pred ceEEEEeCCCEEEecC
Q 015016 341 MHHFVGADSSCISWGH 356 (414)
Q Consensus 341 ~h~~~l~~g~vy~wG~ 356 (414)
.|+++..++++|++|-
T Consensus 309 ~~~~~~~~~~i~v~GG 324 (357)
T 2uvk_A 309 YGVSLPWNNSLLIIGG 324 (357)
T ss_dssp SSEEEEETTEEEEEEE
T ss_pred cceeEEeCCEEEEEee
Confidence 3666666999999985
No 28
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=84.93 E-value=23 Score=32.35 Aligned_cols=114 Identities=8% Similarity=-0.082 Sum_probs=64.9
Q ss_pred CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEE
Q 015016 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLA 133 (414)
Q Consensus 54 ~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~ 133 (414)
....|..++......+.++-..+|.|..|-..... ....+. .....|..++......+.-..+|.|+.
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i 200 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-----------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHH 200 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-----------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCe-----------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEE
Confidence 34467777776545566666778999999754321 111122 223467888887777778888999999
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCee-EEEecccCCeEEEecCC
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT-VWLSSVEGASILNAGLP 190 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~-~~l~~~~g~~v~~~G~n 190 (414)
|-...... ...........|..++...+.. ++....+| .|+.|-..
T Consensus 201 ~d~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-~v~iwd~~ 247 (401)
T 4aez_A 201 HDVRIANH----------QIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-VVQIWDAR 247 (401)
T ss_dssp EETTSSSC----------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEETT
T ss_pred EecccCcc----------eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-eEEEccCC
Confidence 97542211 0111111223466666543333 33332566 88888544
No 29
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=84.02 E-value=24 Score=31.80 Aligned_cols=87 Identities=7% Similarity=0.025 Sum_probs=47.8
Q ss_pred eEeccCCCCCeEEEEEcC-CCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeec----cCCCCcEEEEee---cC
Q 015016 48 TRLRPLVGVDIRFVAAGC-VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS----ELSKYKIKKAGA---GR 119 (414)
Q Consensus 48 ~~i~~~~~~~i~~i~~g~-~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~----~~~~~~i~~i~~---G~ 119 (414)
..+.......|..++... .....+.-..||.|..|-.........-. ......+. ......|..++. +.
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 112 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT---CKAVCSIGRDHPDVHRYSVETVQWYPHDT 112 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE---ECEEEEECTTCTTCCSSCEEEEEECTTCT
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe---ccccccccccccccCCCcEEEEEEccCCC
Confidence 333333445788888764 34566666789999999765432211100 00000000 012345777765 44
Q ss_pred CeEEEEEcCCCEEEEEcC
Q 015016 120 SHTVVVTEDGNSLAFGWN 137 (414)
Q Consensus 120 ~~~~~lt~~g~vy~~G~n 137 (414)
...+.-..+|.|..|-..
T Consensus 113 ~~l~s~~~d~~i~iwd~~ 130 (408)
T 4a11_B 113 GMFTSSSFDKTLKVWDTN 130 (408)
T ss_dssp TCEEEEETTSEEEEEETT
T ss_pred cEEEEEeCCCeEEEeeCC
Confidence 466666779999999754
No 30
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=82.49 E-value=27 Score=31.39 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=40.8
Q ss_pred CCeEEEEEcCC----C---ceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCC----CCcEEEEeec------
Q 015016 56 VDIRFVAAGCV----S---CHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELS----KYKIKKAGAG------ 118 (414)
Q Consensus 56 ~~i~~i~~g~~----~---~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~----~~~i~~i~~G------ 118 (414)
..|..++.... . .+.+.-..+|.|+.|-...... ........+.... ...|..++..
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDE------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTT------TCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcc------cccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 36777766532 2 3445556789999997443111 0000022222221 2456666655
Q ss_pred CCe-EEEEEcCCCEEEEEcCC
Q 015016 119 RSH-TVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 119 ~~~-~~~lt~~g~vy~~G~n~ 138 (414)
..+ .+.-+.+|.|+.|-...
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEES
T ss_pred CceEEEEEeCCCcEEEEeCCc
Confidence 444 55567889999997543
No 31
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=80.05 E-value=29 Score=30.08 Aligned_cols=67 Identities=9% Similarity=0.005 Sum_probs=30.9
Q ss_pred ceEEEeCC-CC-EEEccCCCCCCCceeeeeecccCCCCceEEEec----------CCceEEEEe-CCCEEEecCCCCCCc
Q 015016 296 NSSCTAGG-GQ-LYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS----------GNMHHFVGA-DSSCISWGHAQYGEL 362 (414)
Q Consensus 296 ~s~~l~~~-g~-v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~----------g~~h~~~l~-~g~vy~wG~n~~gql 362 (414)
..++++.+ |+ +|.++.+...+.....|..+....+-.+.-... +..+.+.++ +|++ .|-.+....+
T Consensus 187 ~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~ 265 (276)
T 3no2_A 187 CFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKF 265 (276)
T ss_dssp EEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTS
T ss_pred eEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCE-EEEecCcccc
Confidence 46666666 65 455554322222233344444444333332221 133466666 6665 5555554444
Q ss_pred c
Q 015016 363 G 363 (414)
Q Consensus 363 G 363 (414)
|
T Consensus 266 ~ 266 (276)
T 3no2_A 266 G 266 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=78.79 E-value=35 Score=30.26 Aligned_cols=112 Identities=7% Similarity=0.012 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccC--CCCcEEEEeec----CCeEEEEEcCCC
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSEL--SKYKIKKAGAG----RSHTVVVTEDGN 130 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G----~~~~~~lt~~g~ 130 (414)
.|..++......+.+.-..||.|+.|-.... ....+..+ ....|..++.. ....+.-..||.
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 5667776543444444556888888864310 11111111 23457777654 456666778899
Q ss_pred EEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCC---eeEEEecccCCeEEEecCC
Q 015016 131 SLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD---FTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 131 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~---~~~~l~~~~g~~v~~~G~n 190 (414)
|..|-..... .............|..++...+ ..++....+| .|..|-..
T Consensus 81 v~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~ 133 (379)
T 3jrp_A 81 VLIWKEENGR---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFK 133 (379)
T ss_dssp EEEEEEETTE---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECC
T ss_pred EEEEEcCCCc---------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC-cEEEEecC
Confidence 9999643210 0000001111234666665543 2333333667 88888544
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=75.00 E-value=43 Score=29.41 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCC
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRN 85 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n 85 (414)
..|..++......+.+....||.|+.|-..
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 367777776445566667788999999654
No 34
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=74.96 E-value=48 Score=29.87 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCC
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~ 86 (414)
..|..++......+.+....+|.|+.|-...
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 150 APIVSVKWNKDGTHIISMDVENVTILWNVIS 180 (425)
T ss_dssp SCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred ccEEEEEECCCCCEEEEEecCCeEEEEECCC
Confidence 4677777764455666777889999997643
No 35
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=74.86 E-value=74 Score=32.06 Aligned_cols=112 Identities=7% Similarity=0.012 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccC--CCCcEEEEeec----CCeEEEEEcCCC
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSEL--SKYKIKKAGAG----RSHTVVVTEDGN 130 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~i~~i~~G----~~~~~~lt~~g~ 130 (414)
.|..++......+.+.-..||.|.+|-.... ....+..+ -...|..++.. ....+.-..||.
T Consensus 11 ~V~~l~~s~dg~~latg~~dg~I~vwd~~~~------------~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 11 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp CEEEECCCSSSCCEEEEETTTEEEEEEEETT------------EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred eeEEEEECCCCCeEEEEECCCcEEEEecCCC------------CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 4555554432344455567888988863310 11111111 13357777764 455666778999
Q ss_pred EEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCC---eeEEEecccCCeEEEecCC
Q 015016 131 SLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD---FTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 131 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~---~~~~l~~~~g~~v~~~G~n 190 (414)
|+.|-..... .............|..++...+ ..++....+| .|..|-..
T Consensus 79 I~vwd~~~~~---------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg-~I~vwdl~ 131 (753)
T 3jro_A 79 VLIWKEENGR---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG-KVSVVEFK 131 (753)
T ss_dssp EEEEEEETTE---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS-EEEEEECC
T ss_pred EEEEECCCCc---------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC-cEEEEEee
Confidence 9999743210 0000011111234666666543 2333333667 88888544
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=74.17 E-value=43 Score=28.99 Aligned_cols=267 Identities=9% Similarity=-0.001 Sum_probs=122.0
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCccCCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNLVSPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKI 96 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~ 96 (414)
+.||++++++......+.... .....+..... ....|..++......+. +...+|.|..|-.......
T Consensus 18 s~dg~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-h~~~v~~~~~~~~~~~l-~~~~dg~i~iw~~~~~~~~------ 85 (337)
T 1gxr_A 18 TADGQMQPVPFPPDALIGPGI----PRHARQINTLN-HGEVVCAVTISNPTRHV-YTGGKGCVKVWDISHPGNK------ 85 (337)
T ss_dssp CSSSCEEECCCCTTSSSSTTC----CSEEEEEEEEC-CSSCCCEEEECSSSSEE-EEECBSEEEEEETTSTTCC------
T ss_pred CCCCCEEEeecCCCcEecccc----CCccccceecc-CCCceEEEEEecCCcEE-EEcCCCeEEEEECCCCCce------
Confidence 568888888876543322211 11111222221 23356667665433343 3344888999875542211
Q ss_pred CCCCceeecc-CCCCcEEEEeecC--CeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCe-
Q 015016 97 QRDRPTIVSE-LSKYKIKKAGAGR--SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF- 172 (414)
Q Consensus 97 ~~~~p~~v~~-~~~~~i~~i~~G~--~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~- 172 (414)
.....+.. .....|..++... ...++-..+|.|+.|-...... ............|..++...+.
T Consensus 86 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 86 --SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP---------RIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp --SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEECSSSCEEEEEECTTSS
T ss_pred --eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------ceeeecccCCCceEEEEECCCCC
Confidence 11111111 1233566665543 3445556788899986432110 0001111112336665554332
Q ss_pred eEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccC--CceEEEeCCCCE
Q 015016 173 TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYV 250 (414)
Q Consensus 173 ~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~--~~~~~lt~~G~v 250 (414)
.++....+| .|+.|-...... ...+.. ....|..++... ...+....+|.|
T Consensus 155 ~l~~~~~dg-~v~~~d~~~~~~-------------------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i 207 (337)
T 1gxr_A 155 VCFSCCSDG-NIAVWDLHNQTL-------------------------VRQFQG-HTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp EEEEEETTS-CEEEEETTTTEE-------------------------EEEECC-CSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEEeCCC-cEEEEeCCCCce-------------------------eeeeec-ccCceEEEEECCCCCEEEEEecCCcE
Confidence 333332566 888885432100 001111 123466665543 344445678889
Q ss_pred EEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEec--CCceEEEeCCCCEEEccCCCCCCCceeeeeecccC
Q 015016 251 YTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAG--SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDL 328 (414)
Q Consensus 251 y~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g--~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~ 328 (414)
+.|-.... ..+..+.. ...+..++.. ....++-..+|.++.|-..... ...+..
T Consensus 208 ~~~d~~~~--------------~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~------~~~~~~- 263 (337)
T 1gxr_A 208 RSWDLREG--------------RQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD------KYQLHL- 263 (337)
T ss_dssp EEEETTTT--------------EEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSC------EEEECC-
T ss_pred EEEECCCC--------------ceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCC------eEEEcC-
Confidence 99954321 11111111 1123344332 2334445668888888653221 111111
Q ss_pred CCCceEEEecCC--ceEEEEe-CCCEEEecCC
Q 015016 329 SGWNLRCMDSGN--MHHFVGA-DSSCISWGHA 357 (414)
Q Consensus 329 ~~~~i~~i~~g~--~h~~~l~-~g~vy~wG~n 357 (414)
....|..+.... ...++.. +|.|..|-..
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence 123566666553 3333333 8889999543
No 37
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=73.63 E-value=1e+02 Score=33.02 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCC
Q 015016 119 RSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 119 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n 190 (414)
..+.+.-..||.|..|-......+ ........+..++...+..++....+| .|+.|-..
T Consensus 1015 g~~l~s~~~dg~i~vwd~~~~~~~------------~~~~~~~~v~~~~~~~~~~l~~~~~dg-~v~vwd~~ 1073 (1249)
T 3sfz_A 1015 GKTLISSSEDSVIQVWNWQTGDYV------------FLQAHQETVKDFRLLQDSRLLSWSFDG-TVKVWNVI 1073 (1249)
T ss_dssp SSCEEEECSSSBEEEEETTTTEEE------------CCBCCSSCEEEEEECSSSEEEEEESSS-EEEEEETT
T ss_pred CCEEEEEcCCCEEEEEECCCCceE------------EEecCCCcEEEEEEcCCCcEEEEECCC-cEEEEECC
Confidence 344555567889999975432111 111122346666555555555554677 88888544
No 38
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=72.30 E-value=46 Score=28.47 Aligned_cols=227 Identities=10% Similarity=0.023 Sum_probs=109.0
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEee--cCCeEEEEEcCCCEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA--GRSHTVVVTEDGNSLA 133 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~lt~~g~vy~ 133 (414)
..|..++. ....+.+.-..||.|+.|-.... .....+.. ....|..++. ...+.+.-..+|.+..
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSS-----------EEEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 36777776 33456667778899999975321 11111211 1234544443 3445556667788887
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccc
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLA 213 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 213 (414)
|-...... .............|..++......+... .+| .|..|-.. +.
T Consensus 86 ~~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~d~-~i~~~d~~---~~------------------ 134 (313)
T 3odt_A 86 VPLFATSG--------EDPLYTLIGHQGNVCSLSFQDGVVISGS-WDK-TAKVWKEG---SL------------------ 134 (313)
T ss_dssp EETTCCTT--------SCC-CEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETT---EE------------------
T ss_pred EEeeecCC--------CCcccchhhcccCEEEEEecCCEEEEEe-CCC-CEEEEcCC---cE------------------
Confidence 76433210 0001111112234666666444433344 677 89888411 00
Q ss_pred cccCCCceeecccCCCcEEEEEc---cCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEE
Q 015016 214 YEAQPRPRAIAALAGETIVKVAC---GTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVI 290 (414)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~I~~---g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i 290 (414)
...+. .....+..+.. .....++...+|.|+.|-.. .+ +..+.. .....+..+
T Consensus 135 ------~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--------------~~--~~~~~~-~~~~~i~~~ 190 (313)
T 3odt_A 135 ------VYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQND--------------KV--IKTFSG-IHNDVVRHL 190 (313)
T ss_dssp ------EEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--------------EE--EEEECS-SCSSCEEEE
T ss_pred ------EEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--------------ce--EEEEec-cCcccEEEE
Confidence 00011 11123444443 34555666788999999411 11 111111 011123344
Q ss_pred Eec-CCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEE-Ee-CCCEEEecC
Q 015016 291 SAG-SVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFV-GA-DSSCISWGH 356 (414)
Q Consensus 291 ~~g-~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~-l~-~g~vy~wG~ 356 (414)
+.. ....++-..+|.++.|-.... .+..........|..+....+..++ .. ||.|+.|-.
T Consensus 191 ~~~~~~~~~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~ 253 (313)
T 3odt_A 191 AVVDDGHFISCSNDGLIKLVDMHTG------DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSK 253 (313)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECT
T ss_pred EEcCCCeEEEccCCCeEEEEECCch------hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEEC
Confidence 322 222555677899999965321 1111111123357777665443333 33 899999953
No 39
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=71.66 E-value=88 Score=31.51 Aligned_cols=73 Identities=10% Similarity=0.131 Sum_probs=42.7
Q ss_pred CCeEEEEEcCC--CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec----CCeEEEEEcCC
Q 015016 56 VDIRFVAAGCV--SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG----RSHTVVVTEDG 129 (414)
Q Consensus 56 ~~i~~i~~g~~--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~g 129 (414)
..|..++.... ..+.+.-..||.|+.|-.... + ..+..........|..++.. ....+.-+.||
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~---------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-R---------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-E---------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-c---------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 36777776432 345666678899999974321 0 00111111123456666655 44666778889
Q ss_pred CEEEEEcCC
Q 015016 130 NSLAFGWNK 138 (414)
Q Consensus 130 ~vy~~G~n~ 138 (414)
.|..|-...
T Consensus 124 ~I~vwdl~~ 132 (753)
T 3jro_A 124 KVSVVEFKE 132 (753)
T ss_dssp EEEEEECCS
T ss_pred cEEEEEeec
Confidence 999997543
No 40
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=70.75 E-value=66 Score=29.68 Aligned_cols=240 Identities=8% Similarity=0.048 Sum_probs=116.1
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec----CCeEEEEEcCCCE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG----RSHTVVVTEDGNS 131 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~g~v 131 (414)
..|..++.... ...+.-..||.|..|-....- ....+.. ....|..++.- ....+.-+.||.|
T Consensus 163 ~~V~~l~~~~~-~~l~s~s~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~s~d~~i 229 (464)
T 3v7d_B 163 GGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC-----------CTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTL 229 (464)
T ss_dssp SCEEEEEECST-TEEEEEETTSCEEEEETTTTE-----------EEEEECC-CSSCEEEEEEEESSSCEEEEEEETTSCE
T ss_pred cCEEEEEEcCC-CEEEEEeCCCCEEEEECCCCc-----------EEEEECC-CCCccEEEEEecCCCCCEEEEEcCCCcE
Confidence 36777776532 355566778999999754311 1111111 12345555442 2456666788999
Q ss_pred EEEEcCCCCCCCCCCCCCc---------ccCcCeeee---ccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCC
Q 015016 132 LAFGWNKHGQLGSGSIRNE---------IEPSPVRCL---VSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGT 199 (414)
Q Consensus 132 y~~G~n~~gqlg~~~~~~~---------~~~~~~~~~---~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~ 199 (414)
..|-............... ..+..+... ...+..++......+.-. .+| .|..|-..+...
T Consensus 230 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~-~d~-~i~vwd~~~~~~----- 302 (464)
T 3v7d_B 230 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS-YDN-TLIVWDVAQMKC----- 302 (464)
T ss_dssp EEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE-TTS-CEEEEETTTTEE-----
T ss_pred EEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe-CCC-eEEEEECCCCcE-----
Confidence 9997654332211000000 000001111 123555554444444444 667 888885432100
Q ss_pred CCCCcccCcccccccccCCCceeecccCCCcEEEEEccCC--ceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeee
Q 015016 200 DNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTN--HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDV 277 (414)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~ 277 (414)
...+.. ....|..++.... ..+.-..+|.|+.|-... ...+..
T Consensus 303 --------------------~~~~~~-~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~--------------~~~~~~ 347 (464)
T 3v7d_B 303 --------------------LYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLEN--------------GELMYT 347 (464)
T ss_dssp --------------------EEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--------------TEEEEE
T ss_pred --------------------EEEecC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------------CcEEEE
Confidence 000111 1234656555433 445556788999995432 112222
Q ss_pred cccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEEEeCCCEEEecCC
Q 015016 278 FQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGADSSCISWGHA 357 (414)
Q Consensus 278 ~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~~g~vy~wG~n 357 (414)
+.. ....+..++....+.+.-..||.|..|-..... ............+..+.......++-.+|.|..|-..
T Consensus 348 ~~~--h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~ 420 (464)
T 3v7d_B 348 LQG--HTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 420 (464)
T ss_dssp ECC--CSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-----EEEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETT
T ss_pred EeC--CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----eeeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECC
Confidence 221 112345666666667777889999999654321 1111112222234555555544444448889998543
No 41
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=67.71 E-value=76 Score=29.23 Aligned_cols=240 Identities=9% Similarity=0.042 Sum_probs=115.8
Q ss_pred CCeEEEEEc--CCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCC---------CCCceeec--cCCCCcEEEEeecCCeE
Q 015016 56 VDIRFVAAG--CVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQ---------RDRPTIVS--ELSKYKIKKAGAGRSHT 122 (414)
Q Consensus 56 ~~i~~i~~g--~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~---------~~~p~~v~--~~~~~~i~~i~~G~~~~ 122 (414)
..|..++.. ....+.+.-..||.|..|-.............. ...|..+. ......+..++......
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence 356666553 123556666788999999865433221110000 00111111 11234577777777788
Q ss_pred EEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCe-eEEEecccCCeEEEecCCCCCcccCCCCC
Q 015016 123 VVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADF-TVWLSSVEGASILNAGLPQYGQLGHGTDN 201 (414)
Q Consensus 123 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~-~~~l~~~~g~~v~~~G~n~~gqlG~~~~~ 201 (414)
+.-..||.|..|-......+ .........|..++...+. .++....+| .|+.|-..+. ++
T Consensus 284 ~~~~~d~~i~vwd~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~l~sg~~dg-~i~vwd~~~~-~~------ 344 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQMKCL-----------YILSGHTDRIYSTIYDHERKRCISASMDT-TIRIWDLENG-EL------ 344 (464)
T ss_dssp EEEETTSCEEEEETTTTEEE-----------EEECCCSSCEEEEEEETTTTEEEEEETTS-CEEEEETTTT-EE------
T ss_pred EEEeCCCeEEEEECCCCcEE-----------EEecCCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC-cE------
Confidence 88888999999975322110 0011112335555544332 223332566 8888843321 10
Q ss_pred CCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccC
Q 015016 202 EYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRN 281 (414)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~ 281 (414)
...+. .....|..++....+.+.-..+|.|..|-..... ...... ..
T Consensus 345 ------------------~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-----------~~~~~~---~~ 391 (464)
T 3v7d_B 345 ------------------MYTLQ-GHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-----------RKFSYH---HT 391 (464)
T ss_dssp ------------------EEEEC-CCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-----------EEEEEE---CT
T ss_pred ------------------EEEEe-CCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-----------eeeeec---CC
Confidence 00111 1123577777777777777899999999654311 011111 11
Q ss_pred CCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCceEEEEe--CCCEEEe
Q 015016 282 NVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNMHHFVGA--DSSCISW 354 (414)
Q Consensus 282 ~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~h~~~l~--~g~vy~w 354 (414)
. ...+..+..... .++...+|.+..|-.... ... ..........|..++......++.. +|.++.|
T Consensus 392 ~-~~~~~~~~~~~~-~l~~~~dg~i~iwd~~~g----~~~-~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 392 N-LSAITTFYVSDN-ILVSGSENQFNIYNLRSG----KLV-HANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp T-CCCEEEEEECSS-EEEEEETTEEEEEETTTC----CEE-ESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred C-CccEEEEEeCCC-EEEEecCCeEEEEECCCC----cEE-ehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEE
Confidence 1 111123333333 344445888999854321 111 1111122346777776655555543 6666655
No 42
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=67.70 E-value=61 Score=28.10 Aligned_cols=18 Identities=6% Similarity=-0.171 Sum_probs=13.5
Q ss_pred CceEEEEeCCCEEEecCC
Q 015016 340 NMHHFVGADSSCISWGHA 357 (414)
Q Consensus 340 ~~h~~~l~~g~vy~wG~n 357 (414)
..|.++..++++|++|-.
T Consensus 239 ~~~~~~~~~~~i~v~GG~ 256 (306)
T 3ii7_A 239 VTVKCAAVGSIVYVLAGF 256 (306)
T ss_dssp SCCEEEEETTEEEEEECB
T ss_pred cceeEEEECCEEEEEeCc
Confidence 356666669999999853
No 43
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=65.52 E-value=37 Score=29.83 Aligned_cols=204 Identities=13% Similarity=0.083 Sum_probs=0.0
Q ss_pred CCeEEEEEcCCCEEEEEcCCCCCCCCCCCCC--cccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCccc
Q 015016 119 RSHTVVVTEDGNSLAFGWNKHGQLGSGSIRN--EIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLG 196 (414)
Q Consensus 119 ~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~--~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG 196 (414)
+.+..+...+++||++|-.....-+...... .....+....-..+..+-.......+.. .++ +||.+|
T Consensus 47 r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~-~iyv~G-------- 116 (318)
T 2woz_A 47 RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VDD-KIYVVA-------- 116 (318)
T ss_dssp SSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ETT-EEEEEE--------
T ss_pred ccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-ECC-EEEEEc--------
Q ss_pred CCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCCCCCcCCCC----CCCccce
Q 015016 197 HGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGGYGRLGHRE----QKDEWVP 272 (414)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~~gqlg~~~----~~~~~~p 272 (414)
|.....................=..+..++..+ ..|+++. .+++||.+|-...+.--..+ .......
T Consensus 117 -G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 117 -GKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV-------YGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp -EEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE-------ESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred -CccCCCCcccceEEEEeCCCCCEeECCCCCCcc-------cccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Q ss_pred EEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEe----cCCceEEEEeC
Q 015016 273 RRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMD----SGNMHHFVGAD 348 (414)
Q Consensus 273 ~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~----~g~~h~~~l~~ 348 (414)
.++. ..........+..-++++|+.|-..... .........+.......+. .-..|+++..+
T Consensus 188 ~~~~------------~~p~~r~~~~~~~~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 253 (318)
T 2woz_A 188 KDLA------------PMKTPRSMFGVAIHKGKIVIAGGVTEDG--LSASVEAFDLKTNKWEVMTEFPQERSSISLVSLA 253 (318)
T ss_dssp EEEC------------CCSSCCBSCEEEEETTEEEEEEEEETTE--EEEEEEEEETTTCCEEECCCCSSCCBSCEEEEET
T ss_pred EECC------------CCCCCcccceEEEECCEEEEEcCcCCCC--ccceEEEEECCCCeEEECCCCCCcccceEEEEEC
Q ss_pred CCEEEec
Q 015016 349 SSCISWG 355 (414)
Q Consensus 349 g~vy~wG 355 (414)
+++|++|
T Consensus 254 ~~i~v~G 260 (318)
T 2woz_A 254 GSLYAIG 260 (318)
T ss_dssp TEEEEEC
T ss_pred CEEEEEC
No 44
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=64.64 E-value=16 Score=31.98 Aligned_cols=17 Identities=12% Similarity=-0.078 Sum_probs=11.9
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 015016 68 CHCVAVDVEGRCYTWGRN 85 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~n 85 (414)
.|+++.. +++||++|-.
T Consensus 105 ~~~~~~~-~~~lyv~GG~ 121 (301)
T 2vpj_A 105 LAGATTL-GDMIYVSGGF 121 (301)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEEccc
Confidence 4555554 6899999943
No 45
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=62.03 E-value=27 Score=30.32 Aligned_cols=18 Identities=17% Similarity=0.171 Sum_probs=12.1
Q ss_pred ceEEEEeCCCCEEEEeCCC
Q 015016 68 CHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~n~ 86 (414)
.|++++. +++||++|-..
T Consensus 55 ~~~~~~~-~~~l~v~GG~~ 72 (301)
T 2vpj_A 55 YVASVSL-HDRIYVIGGYD 72 (301)
T ss_dssp SCEEEEE-TTEEEEECCBC
T ss_pred cccEEEE-CCEEEEEcCCC
Confidence 3555554 57899999543
No 46
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=60.35 E-value=85 Score=27.20 Aligned_cols=162 Identities=9% Similarity=-0.040 Sum_probs=79.9
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CC-eEEEEEcCCCEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RS-HTVVVTEDGNSL 132 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~-~~~~lt~~g~vy 132 (414)
..|..++......+.++-..||.|+.|-..... ....+..+.. ....|..++.. .. ..++-+.+|.|+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 366777765434455666778999999754321 0001111211 22345555543 44 566667789999
Q ss_pred EEEcCCCCCCCCCCCCCcccCcCeee--eccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccc
Q 015016 133 AFGWNKHGQLGSGSIRNEIEPSPVRC--LVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSV 210 (414)
Q Consensus 133 ~~G~n~~gqlg~~~~~~~~~~~~~~~--~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~ 210 (414)
.|-....+++ ..+.. ....|..++......++....++ .|+.|-...... .. ..
T Consensus 83 ~wd~~~~~~~-----------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~-~i~iwd~~~~~~-----~~-~~------ 138 (342)
T 1yfq_A 83 KVDLIGSPSF-----------QALTNNEANLGICRICKYGDDKLIAASWDG-LIEVIDPRNYGD-----GV-IA------ 138 (342)
T ss_dssp EECSSSSSSE-----------EECBSCCCCSCEEEEEEETTTEEEEEETTS-EEEEECHHHHTT-----BC-EE------
T ss_pred EEEeccCCce-----------EeccccCCCCceEEEEeCCCCEEEEEcCCC-eEEEEccccccc-----cc-cc------
Confidence 9964111111 11111 22335555443223333332667 888884321100 00 00
Q ss_pred ccccccCCCce-eecccCCCcEEEEEccCCceEEEeCCCCEEEeeCCC
Q 015016 211 KLAYEAQPRPR-AIAALAGETIVKVACGTNHTVAVDSKGYVYTWGFGG 257 (414)
Q Consensus 211 ~~~~~~~~~~~-~~~~~~~~~i~~I~~g~~~~~~lt~~G~vy~wG~n~ 257 (414)
....+. .+. ....|..++......++...+|.|+.|-...
T Consensus 139 -----~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 139 -----VKNLNSNNTK--VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp -----EEESCSSSSS--SCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred -----ccCCeeeEEe--eCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 000000 011 1235777777777766678899999996543
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=60.00 E-value=1.4e+02 Score=29.78 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=57.7
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecC--CeEEEEEcCCCEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLA 133 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~ 133 (414)
..|..++........++-..+|.|+.|-...... ...+.. ....|..++... .+.+.-+.||.|..
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-----------~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK-----------VVDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCE-----------EEEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-----------EEEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 3677776664455666667889999997543211 111221 123465555543 34555567888998
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCC--CeeEEEecccCCeEEEecC
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA--DFTVWLSSVEGASILNAGL 189 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~--~~~~~l~~~~g~~v~~~G~ 189 (414)
|-...... ...........|..++... ...++....+| .|+.|-.
T Consensus 124 w~~~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~v~vwd~ 170 (814)
T 3mkq_A 124 WNWENNWA----------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR-TVKVWSL 170 (814)
T ss_dssp EEGGGTSE----------EEEEEECCSSCEEEEEEETTEEEEEEEEETTS-EEEEEET
T ss_pred EECCCCce----------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC-eEEEEEC
Confidence 86432110 0011111123366665543 23344443567 8888854
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=58.81 E-value=92 Score=27.15 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=43.4
Q ss_pred CCCeEEEEEcC-CCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeec--cCCCCcEEEEeec--CCeEEEEEcCC
Q 015016 55 GVDIRFVAAGC-VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVS--ELSKYKIKKAGAG--RSHTVVVTEDG 129 (414)
Q Consensus 55 ~~~i~~i~~g~-~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~--~~~~~~i~~i~~G--~~~~~~lt~~g 129 (414)
...|..++... .....+.-..||.|+.|-..... ....+. ......|..++.. ..+.+.-..||
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 183 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-----------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDH 183 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-----------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-----------EEEEecccccccCceeEEEECCCCCEEEEecCCC
Confidence 34778887764 34566666788999999753311 111111 1123457777654 34555666789
Q ss_pred CEEEEEcC
Q 015016 130 NSLAFGWN 137 (414)
Q Consensus 130 ~vy~~G~n 137 (414)
.|+.|-..
T Consensus 184 ~i~i~d~~ 191 (366)
T 3k26_A 184 SLKLWRIN 191 (366)
T ss_dssp CEEEEESC
T ss_pred CEEEEECC
Confidence 99999754
No 49
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=58.76 E-value=32 Score=30.12 Aligned_cols=16 Identities=31% Similarity=0.144 Sum_probs=11.4
Q ss_pred ceEEEEeCCCCEEEEeC
Q 015016 68 CHCVAVDVEGRCYTWGR 84 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~ 84 (414)
.|++++. +++||++|-
T Consensus 161 ~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 161 GVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp SCEEEEE-TTEEEEECC
T ss_pred ceEEEEE-CCEEEEEeC
Confidence 4555555 779999994
No 50
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=56.49 E-value=41 Score=29.28 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=11.8
Q ss_pred ceEEEEeCCCCEEEEeCC
Q 015016 68 CHCVAVDVEGRCYTWGRN 85 (414)
Q Consensus 68 ~~~~~lt~~g~vy~wG~n 85 (414)
.|++++. +++||++|-.
T Consensus 94 ~~~~~~~-~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAA-EGKIYTSGGS 110 (306)
T ss_dssp SCEEEEE-TTEEEEECCB
T ss_pred ceeEEEE-CCEEEEECCC
Confidence 4555544 7789999953
No 51
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=55.88 E-value=1.1e+02 Score=27.27 Aligned_cols=24 Identities=0% Similarity=-0.163 Sum_probs=14.3
Q ss_pred ceEEEecCCce-EEEEe--CCCEEEec
Q 015016 332 NLRCMDSGNMH-HFVGA--DSSCISWG 355 (414)
Q Consensus 332 ~i~~i~~g~~h-~~~l~--~g~vy~wG 355 (414)
.|..++...+- .+|-. |+.|-+|=
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIK 340 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 57777665433 33322 88888884
No 52
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=55.83 E-value=1.1e+02 Score=26.91 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=41.7
Q ss_pred CCeEEEEEcCC--CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec----CCeEEEEEcCC
Q 015016 56 VDIRFVAAGCV--SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG----RSHTVVVTEDG 129 (414)
Q Consensus 56 ~~i~~i~~g~~--~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~~~~lt~~g 129 (414)
..|..++.... ..+.+.-..||.|..|-..... ..+..........|..++.. ....+.-+.+|
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc----------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 36777776421 3456666778999999643210 00111111123456666655 34566667889
Q ss_pred CEEEEEcCC
Q 015016 130 NSLAFGWNK 138 (414)
Q Consensus 130 ~vy~~G~n~ 138 (414)
.|..|-...
T Consensus 126 ~i~v~d~~~ 134 (379)
T 3jrp_A 126 KVSVVEFKE 134 (379)
T ss_dssp EEEEEECCT
T ss_pred cEEEEecCC
Confidence 999997543
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=54.36 E-value=1.2e+02 Score=27.11 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=40.8
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec---CCeEEEEEcCCCEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGNSL 132 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~vy 132 (414)
..|..++........+.-..||.|..|-...... + ......+.. ....|..++.. ....+.-..||.|+
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-~------~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-A------INSMARFSN-HSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-C------CCEEEECCC-SSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeecccccc-c------ccchhhccC-CccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 4677777764444555556789999997543110 0 001111111 12345555543 44555666789999
Q ss_pred EEEcCC
Q 015016 133 AFGWNK 138 (414)
Q Consensus 133 ~~G~n~ 138 (414)
.|-...
T Consensus 140 iwd~~~ 145 (416)
T 2pm9_A 140 IWDMNK 145 (416)
T ss_dssp BCBTTT
T ss_pred EEECCC
Confidence 997543
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=54.03 E-value=1.1e+02 Score=26.43 Aligned_cols=31 Identities=10% Similarity=0.057 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCC
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~ 86 (414)
..|..++......+.+.-..||.|+.|-...
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~ 117 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTT 117 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCEEEEEECCCCCEEEEEcccccceEEeecc
Confidence 3667777654445556667778888886543
No 55
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=52.61 E-value=1.4e+02 Score=27.20 Aligned_cols=69 Identities=7% Similarity=-0.088 Sum_probs=39.9
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecCCeEEEEEcCCCEEEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGRSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G 135 (414)
..|..|+......+.+.-+.||.|..|-....-. ...+. .-...+..++......+.-..++.++.|-
T Consensus 148 ~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~-----------~~~~~-~h~~~v~~~s~~~~~l~sgs~d~~i~~~d 215 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR-----------LRNMT-SHSARVGSLSWNSYILSSGSRSGHIHHHD 215 (420)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----------EEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE-----------EEEEe-CCCCceEEEeeCCCEEEEEeCCCceeEee
Confidence 3577777765445666667788888887543111 11111 12335666666655555566777777775
Q ss_pred c
Q 015016 136 W 136 (414)
Q Consensus 136 ~ 136 (414)
.
T Consensus 216 ~ 216 (420)
T 4gga_A 216 V 216 (420)
T ss_dssp T
T ss_pred e
Confidence 3
No 56
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=50.34 E-value=1.3e+02 Score=26.18 Aligned_cols=59 Identities=7% Similarity=0.095 Sum_probs=30.3
Q ss_pred ceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEec----CCceEEEEeCCCEEEecCC
Q 015016 296 NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDS----GNMHHFVGADSSCISWGHA 357 (414)
Q Consensus 296 ~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~----g~~h~~~l~~g~vy~wG~n 357 (414)
|+++. -++++|+.|-..... ...-.....+.......+.. -..|+++..++++|++|-.
T Consensus 190 ~~~~~-~~~~iyv~GG~~~~~--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 190 FGATV-HDGRIIVAAGVTDTG--LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp CEEEE-ETTEEEEEEEECSSS--EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEE
T ss_pred eEEEE-ECCEEEEEeccCCCC--ccceEEEEECCCCeEEECCCCCCcccceeEEEECCEEEEECCc
Confidence 44443 377999988533211 11111222233334444431 2246666669999999843
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=48.60 E-value=1.3e+02 Score=25.96 Aligned_cols=70 Identities=10% Similarity=0.014 Sum_probs=36.7
Q ss_pred CcEEEEeecCCe-EEEEEc-----CCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCC----eeEEEecc
Q 015016 110 YKIKKAGAGRSH-TVVVTE-----DGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGAD----FTVWLSSV 179 (414)
Q Consensus 110 ~~i~~i~~G~~~-~~~lt~-----~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~----~~~~l~~~ 179 (414)
..|..|+..... .++.+. ||.|+.|-..... ............|..++...+ ..++....
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------LKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------EEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------ccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 357777765532 233332 7889998653211 011111122335777777664 44444435
Q ss_pred cCCeEEEecCC
Q 015016 180 EGASILNAGLP 190 (414)
Q Consensus 180 ~g~~v~~~G~n 190 (414)
+| .|..|-..
T Consensus 89 dg-~i~iwd~~ 98 (357)
T 3i2n_A 89 GG-NLHIWNLE 98 (357)
T ss_dssp TS-CEEEECTT
T ss_pred CC-eEEEEeCC
Confidence 77 88888544
No 58
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=48.45 E-value=2.8e+02 Score=29.55 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=37.4
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec-CCeEEEEEcCCCEEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG-RSHTVVVTEDGNSLAFG 135 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-~~~~~~lt~~g~vy~~G 135 (414)
.|..++......+.+.-..||.|..|-....-. ..+.. ....|..++.. ....++...+|.|+.|-
T Consensus 1005 ~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~------------~~~~~-~~~~v~~~~~~~~~~l~~~~~dg~v~vwd 1071 (1249)
T 3sfz_A 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY------------VFLQA-HQETVKDFRLLQDSRLLSWSFDGTVKVWN 1071 (1249)
T ss_dssp CCCCEEECSSSSCEEEECSSSBEEEEETTTTEE------------ECCBC-CSSCEEEEEECSSSEEEEEESSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCce------------EEEec-CCCcEEEEEEcCCCcEEEEECCCcEEEEE
Confidence 455565543344555566788999997543111 01111 12245554443 33456667789999997
Q ss_pred cC
Q 015016 136 WN 137 (414)
Q Consensus 136 ~n 137 (414)
..
T Consensus 1072 ~~ 1073 (1249)
T 3sfz_A 1072 VI 1073 (1249)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 59
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=48.45 E-value=1.3e+02 Score=25.76 Aligned_cols=73 Identities=11% Similarity=0.022 Sum_probs=32.8
Q ss_pred cEEEEeec-CCeEEEEEcCCC-EEEEEcCCCCCCCCCCCCCcccCcCeeee-ccceEEEEeCCCeeEEEecccCCeEEEe
Q 015016 111 KIKKAGAG-RSHTVVVTEDGN-SLAFGWNKHGQLGSGSIRNEIEPSPVRCL-VSEVTATACGADFTVWLSSVEGASILNA 187 (414)
Q Consensus 111 ~i~~i~~G-~~~~~~lt~~g~-vy~~G~n~~gqlg~~~~~~~~~~~~~~~~-~~~i~~is~G~~~~~~l~~~~g~~v~~~ 187 (414)
++.-..++ ....++++.+|+ +|.++.... + ......+..+... ..++.-.........++. .+|..+|.+
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d-~~G~~~w~~ 161 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKKGNYLVPLFATSEVREIA-PNGQLLNSV 161 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTTSCEEEEETTTTEEEEEC-TTSCEEEEE
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCCCCEEEEecCCCEEEEEC-CCCCEEEEE
Confidence 44444455 455566677776 455553211 0 0001112222222 223443333444445555 567677877
Q ss_pred cCC
Q 015016 188 GLP 190 (414)
Q Consensus 188 G~n 190 (414)
+..
T Consensus 162 ~~~ 164 (276)
T 3no2_A 162 KLS 164 (276)
T ss_dssp ECS
T ss_pred ECC
Confidence 653
No 60
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=47.69 E-value=1.4e+02 Score=25.90 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=76.7
Q ss_pred CCcEEEEeecCC-----eEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeE-EEecccCC
Q 015016 109 KYKIKKAGAGRS-----HTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTV-WLSSVEGA 182 (414)
Q Consensus 109 ~~~i~~i~~G~~-----~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~-~l~~~~g~ 182 (414)
...|..|+.... ..+.-..||.|..|-....++. ...........|..++...+..+ +....+|
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg- 108 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT---------IPKAQQMHTGPVLDVCWSDDGSKVFTASCDK- 108 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE---------EEEEEEECSSCEEEEEECTTSSEEEEEETTS-
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce---------eEEEeccccCCEEEEEECcCCCEEEEEcCCC-
Confidence 456888887754 3444567899999976432110 11112222344777766544333 3232567
Q ss_pred eEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEc--cCC-c-eEEEeCCCCEEEeeCCCC
Q 015016 183 SILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVAC--GTN-H-TVAVDSKGYVYTWGFGGY 258 (414)
Q Consensus 183 ~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~--g~~-~-~~~lt~~G~vy~wG~n~~ 258 (414)
.|..|-..... ...+.. ....|..++. ... . .+.-..+|.|+.|-....
T Consensus 109 ~v~iwd~~~~~--------------------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 109 TAKMWDLSSNQ--------------------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp EEEEEETTTTE--------------------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred cEEEEEcCCCC--------------------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence 88888544210 001111 1235666664 333 2 344457889999953321
Q ss_pred CCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEccCC
Q 015016 259 GRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMWGKL 312 (414)
Q Consensus 259 gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~wG~~ 312 (414)
. + +..+... ..+..+.......++.+.++.+..|-..
T Consensus 162 ~------------~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 162 N------------P--MMVLQLP---ERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp S------------C--SEEEECS---SCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred c------------E--EEEEecC---CCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 0 0 0011110 1223445555667777888899888653
No 61
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=47.24 E-value=1.5e+02 Score=26.22 Aligned_cols=71 Identities=13% Similarity=-0.063 Sum_probs=34.8
Q ss_pred cEEEEeec-CCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEe-cccCCeEEEec
Q 015016 111 KIKKAGAG-RSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLS-SVEGASILNAG 188 (414)
Q Consensus 111 ~i~~i~~G-~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~-~~~g~~v~~~G 188 (414)
.|..++.. ....+.-..||.|..|-......+.. ...........|..++...+-..+++ ..++ .|..|-
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~-------~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~-~i~iwd 155 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIV-------SKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI-CIKVWD 155 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEE-------EEEEEECCSSCEEEEEECTTSSEEEEEETTS-CEEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeE-------eeccccCCCCCEEEEEECCCCCEEEEEeCCC-eEEEEE
Confidence 46666643 34555557789999996533211100 00000011234666665444433333 2566 788884
Q ss_pred C
Q 015016 189 L 189 (414)
Q Consensus 189 ~ 189 (414)
.
T Consensus 156 ~ 156 (344)
T 4gqb_B 156 L 156 (344)
T ss_dssp T
T ss_pred C
Confidence 3
No 62
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=46.93 E-value=1.7e+02 Score=26.78 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=40.3
Q ss_pred EEEEeecCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCC
Q 015016 112 IKKAGAGRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 112 i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n 190 (414)
|.+|++ ....+++.+++.|..|-.....+.. ..+.....+.++.+-....++++ .+| .|+.|-..
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~~~~-----------~~~~~~~~v~~i~~~~p~~av~~-~dG-~L~v~dl~ 154 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELSEFR-----------TVTSFEKPVFQLKNVNNTLVILN-SVN-DLSALDLR 154 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTTCEE-----------EEEECSSCEEEEEECSSEEEEEE-TTS-EEEEEETT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhhccC-----------ccceeecceeeEEecCCCEEEEE-CCC-CEEEEEcc
Confidence 999999 7788888899999999765443211 11111122444444444445555 788 99999433
No 63
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=46.15 E-value=1.5e+02 Score=25.70 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCeEEEEEcCC---CceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEe--------ecCCeEEE
Q 015016 56 VDIRFVAAGCV---SCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAG--------AGRSHTVV 124 (414)
Q Consensus 56 ~~i~~i~~g~~---~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~--------~G~~~~~~ 124 (414)
..|..++.... ....+.-..+|.|..|-.....+ ....+.. ....|..+. ......+.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~ 134 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVT 134 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc----------cEEEEEe-cccceEEEeeccccccCCCccEEEE
Confidence 36677776532 24555567788999997543220 1111211 223466552 23445666
Q ss_pred EEcCCCEEEEEcC
Q 015016 125 VTEDGNSLAFGWN 137 (414)
Q Consensus 125 lt~~g~vy~~G~n 137 (414)
-..||.|..|-..
T Consensus 135 ~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 135 GSRDGTVKVWDPR 147 (357)
T ss_dssp EETTSCEEEECTT
T ss_pred EeCCCeEEEEeCC
Confidence 6788999999654
No 64
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=43.61 E-value=1.9e+02 Score=26.43 Aligned_cols=99 Identities=8% Similarity=0.106 Sum_probs=58.1
Q ss_pred ceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCce
Q 015016 162 EVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNHT 241 (414)
Q Consensus 162 ~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~~ 241 (414)
.|.++++ +...+++. .++ .|..|=-.+..+. ..+.... ..+.+|.+.....
T Consensus 89 ~V~~l~f-d~~~L~v~-~~~-~l~v~dv~sl~~~-------------------------~~~~~~~-~~v~~i~~~~p~~ 139 (388)
T 1xip_A 89 DVIFVCF-HGDQVLVS-TRN-ALYSLDLEELSEF-------------------------RTVTSFE-KPVFQLKNVNNTL 139 (388)
T ss_dssp TEEEEEE-ETTEEEEE-ESS-EEEEEESSSTTCE-------------------------EEEEECS-SCEEEEEECSSEE
T ss_pred CeeEEEE-CCCEEEEE-cCC-cEEEEEchhhhcc-------------------------Cccceee-cceeeEEecCCCE
Confidence 3999999 66677777 677 8888854432211 0111111 2355666666667
Q ss_pred EEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCCceEEEeCCCCEEEc
Q 015016 242 VAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSVNSSCTAGGGQLYMW 309 (414)
Q Consensus 242 ~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~~s~~l~~~g~v~~w 309 (414)
++++.+|.|+.|--... ++ .+ +. ..+.+++-...-.++...+|.+..|
T Consensus 140 av~~~dG~L~v~dl~~~-~~---------~~--~~--------~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 140 VILNSVNDLSALDLRTK-ST---------KQ--LA--------QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp EEEETTSEEEEEETTTC-CE---------EE--EE--------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred EEEECCCCEEEEEccCC-cc---------cc--cc--------CCceEEEEcCCceEEEEcCCcEEEE
Confidence 77899999999954321 10 11 11 1344666555555666677877777
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=43.44 E-value=1.8e+02 Score=26.01 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=58.5
Q ss_pred EEEEcCCCceEEEE---eCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec---CCeEEEEEcCCCEEE
Q 015016 60 FVAAGCVSCHCVAV---DVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGNSLA 133 (414)
Q Consensus 60 ~i~~g~~~~~~~~l---t~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~vy~ 133 (414)
.+++. ..+..++ ..+|.|++|-....+++.. ..+ .+.. -...|..++.. ....+.-..||.|..
T Consensus 39 ~~~~~--~~~~~~~~~~~~~g~i~v~~~~~~~~~~~------~~~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 39 FCAVN--PKFMALICEASGGGAFLVLPLGKTGRVDK------NVP-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp SEEEC--SSEEEEEBCCSSSCCEEEEETTCCEECCT------TCC-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred cEEEC--CCeEEEEEEEcCCCEEEEEECccCCCCCC------CCc-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 35554 4444444 4578999998765544311 011 1111 12357777663 445555567899999
Q ss_pred EEcCCCCCCCCCCCCCcccCcCeee---eccceEEEEeCCCe--eEEEecccCCeEEEecCC
Q 015016 134 FGWNKHGQLGSGSIRNEIEPSPVRC---LVSEVTATACGADF--TVWLSSVEGASILNAGLP 190 (414)
Q Consensus 134 ~G~n~~gqlg~~~~~~~~~~~~~~~---~~~~i~~is~G~~~--~~~l~~~~g~~v~~~G~n 190 (414)
|-....+... ....++.. ....|..++..... .++....+| .|+.|-..
T Consensus 109 w~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg-~i~iwd~~ 162 (402)
T 2aq5_A 109 WEIPDGGLVL-------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN-VILVWDVG 162 (402)
T ss_dssp EECCTTCCSS-------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS-CEEEEETT
T ss_pred EEccCCCCcc-------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC-EEEEEECC
Confidence 9765432111 01112222 22347777665553 333333567 88888543
No 66
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=42.14 E-value=1.8e+02 Score=25.69 Aligned_cols=235 Identities=11% Similarity=-0.035 Sum_probs=103.9
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecC--CeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR--SHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~~~~lt~~g~vy~~ 134 (414)
.|..++... ....++-..+|.|..|--.....+ ........--...|..|+... .+.+.-..||.|..|
T Consensus 96 ~V~~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~--------~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 96 GVTDVAWVS-EKGILVASDSGAVELWEILEKESL--------LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp CEEEEEEET-TTEEEEEETTSCEEEC----------------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred CEEEEEEcC-CCCEEEEECCCEEEEeecccccee--------EEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 466666553 234455566788888853221110 001101001123466665543 344455678889998
Q ss_pred EcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCC--CeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCccccc
Q 015016 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGA--DFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKL 212 (414)
Q Consensus 135 G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~--~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~ 212 (414)
-...... ..........|..++... ...++....+| .|..|-......+
T Consensus 167 d~~~~~~-----------~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg-~v~~wd~~~~~~~----------------- 217 (357)
T 4g56_B 167 DLSQKAV-----------LKSYNAHSSEVNCVAACPGKDTIFLSCGEDG-RILLWDTRKPKPA----------------- 217 (357)
T ss_dssp ETTTTEE-----------EEEECCCSSCEEEEEECTTCSSCEEEEETTS-CEEECCTTSSSCB-----------------
T ss_pred ECCCCcE-----------EEEEcCCCCCEEEEEEccCCCceeeeeccCC-ceEEEECCCCcee-----------------
Confidence 6432110 001111123466666532 22333333577 8888843221000
Q ss_pred ccccCCCceeecccCCCcEEEEEccC--CceEE-EeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccE
Q 015016 213 AYEAQPRPRAIAALAGETIVKVACGT--NHTVA-VDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAV 289 (414)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~i~~I~~g~--~~~~~-lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~ 289 (414)
...........+..++... .+.++ -..++.|+.|-.... ..+..+.. ....|..
T Consensus 218 -------~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~--~~~~v~~ 274 (357)
T 4g56_B 218 -------TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAV--HSQNITG 274 (357)
T ss_dssp -------CBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECC--CSSCEEE
T ss_pred -------eeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEec--cceeEEE
Confidence 0000001123466666542 23333 357888999853221 00111111 1113345
Q ss_pred EEecC---CceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecC--CceEEEE-e-CCCEEEecCCCC
Q 015016 290 ISAGS---VNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSG--NMHHFVG-A-DSSCISWGHAQY 359 (414)
Q Consensus 290 i~~g~---~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g--~~h~~~l-~-~g~vy~wG~n~~ 359 (414)
++... ...+.-..||.|+.|-.... . +..... -...|..++.. +...++. . ||.|..|=....
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~----~--~~~~~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFS----E--VFRDLS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSC----E--EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCC----c--EeEECC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 54332 23334467899999943211 1 111111 12357777754 2334443 3 899999965443
No 67
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=40.20 E-value=2.2e+02 Score=25.95 Aligned_cols=239 Identities=8% Similarity=0.017 Sum_probs=0.0
Q ss_pred ccCceEEEeeCCccccccccCCCCCCCc----------cCCeEeccCCCCCeEEEEEcCCCc-eEEEEeCCCCEEEEeCC
Q 015016 17 EKGGELLFCGSTCWDAVGRRKGALDGNL----------VSPTRLRPLVGVDIRFVAAGCVSC-HCVAVDVEGRCYTWGRN 85 (414)
Q Consensus 17 ~~~g~v~~~G~n~~g~LG~~~~~~~~~~----------~~p~~i~~~~~~~i~~i~~g~~~~-~~~~lt~~g~vy~wG~n 85 (414)
..+|.|+.|-.. . ..|..........+..++...... +.+.-..+|.|+.|-.+
T Consensus 148 ~~dg~V~vwd~~---------------~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 212 (430)
T 2xyi_A 148 TPSSDVLVFDYT---------------KHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN 212 (430)
T ss_dssp CSSSCEEEEEGG---------------GSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETT
T ss_pred CCCCcEEEEECC---------------CcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCC
Q ss_pred CCCCCcCCCCCCCCCceeeccCCCCcEEEEee---cCCeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccc
Q 015016 86 ERGQLGHGDKIQRDRPTIVSELSKYKIKKAGA---GRSHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSE 162 (414)
Q Consensus 86 ~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~ 162 (414)
...... ....|..........|..|+. +....+.-..+|.|+.|-.... ...............
T Consensus 213 ~~~~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~--------~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 213 ATPKEH-----RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNN--------NTSKPSHTVDAHTAE 279 (430)
T ss_dssp SCCBGG-----GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCS--------CSSSCSEEEECCSSC
T ss_pred CCCCCC-----ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCC--------CCCcceeEeecCCCC
Q ss_pred eEEEEeCCCe--eEEEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccccccCCCceeecccCCCcEEEEEccCCc
Q 015016 163 VTATACGADF--TVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLAYEAQPRPRAIAALAGETIVKVACGTNH 240 (414)
Q Consensus 163 i~~is~G~~~--~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~~ 240 (414)
|..++..... .++....+| .|..|-... ...+..........|..|+.....
T Consensus 280 v~~i~~~p~~~~~l~tg~~dg-~v~vwd~~~-------------------------~~~~~~~~~~h~~~v~~i~~sp~~ 333 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSADK-TVALWDLRN-------------------------LKLKLHSFESHKDEIFQVQWSPHN 333 (430)
T ss_dssp EEEEEECSSCTTEEEEEETTS-EEEEEETTC-------------------------TTSCSEEEECCSSCEEEEEECSSC
T ss_pred eEEEEeCCCCCCEEEEEeCCC-eEEEEeCCC-------------------------CCCCeEEeecCCCCEEEEEECCCC
Q ss_pred ---eEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecCC-ceEEEeCCCCEEEc
Q 015016 241 ---TVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGSV-NSSCTAGGGQLYMW 309 (414)
Q Consensus 241 ---~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~~-~s~~l~~~g~v~~w 309 (414)
.+.-..+|.|..|-....+............|..+...........-..+..... ..+....+|.|.+|
T Consensus 334 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw 406 (430)
T 2xyi_A 334 ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406 (430)
T ss_dssp TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEe
No 68
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=39.97 E-value=2e+02 Score=25.49 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=40.8
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~~ 134 (414)
.|..++......+.+.-..+|.|+.|- ..++ ....+.. ....|..++.. ..+.+....+|.|+.|
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~--~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN--KTGA----------LLNVLNF-HRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE--TTSC----------EEEEECC-CCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe--CCCC----------eeeeccC-CCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 677777765445666667788899995 1111 1111221 22356666654 3455666778999999
Q ss_pred EcCC
Q 015016 135 GWNK 138 (414)
Q Consensus 135 G~n~ 138 (414)
-...
T Consensus 177 d~~~ 180 (425)
T 1r5m_A 177 NVIS 180 (425)
T ss_dssp ETTT
T ss_pred ECCC
Confidence 7543
No 69
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=39.93 E-value=2.5e+02 Score=26.52 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~~ 134 (414)
.+..++......+.+.-..+|.|..|-.+ +++ ...+.. ....|..|+.. ..+.+.-..|+.|+.|
T Consensus 346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~----------~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~ 412 (577)
T 2ymu_A 346 SVWGVAFSPDGQTIASASDDKTVKLWNRN--GQL----------LQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLW 412 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT--CCE----------EEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred CEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCE----------EEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEE
Confidence 56666665444555566677888888532 111 111111 12346555543 3344555678888888
Q ss_pred E
Q 015016 135 G 135 (414)
Q Consensus 135 G 135 (414)
-
T Consensus 413 ~ 413 (577)
T 2ymu_A 413 N 413 (577)
T ss_dssp C
T ss_pred e
Confidence 4
No 70
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=38.96 E-value=1.9e+02 Score=24.97 Aligned_cols=79 Identities=9% Similarity=-0.028 Sum_probs=45.1
Q ss_pred CCeEeccCCCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEE
Q 015016 46 SPTRLRPLVGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTV 123 (414)
Q Consensus 46 ~p~~i~~~~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~ 123 (414)
.+..+..-.. .|..++......+.+.-..||.|+.|-..... ....+.. ....|..++.. ..+.+
T Consensus 24 ~~~~l~~h~~-~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~-h~~~v~~~~~~~~~~~l~ 90 (369)
T 3zwl_B 24 KAIKLTGHER-PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----------RLGTLDG-HTGTIWSIDVDCFTKYCV 90 (369)
T ss_dssp EEEEEECCSS-CEEEEEECTTSCEEEEEESSSCEEEEETTTCC-----------EEEEECC-CSSCEEEEEECTTSSEEE
T ss_pred ccEEEEEeec-eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch-----------hhhhhhh-cCCcEEEEEEcCCCCEEE
Confidence 3444444333 67777776444555555678899999643211 1112221 23356666654 44556
Q ss_pred EEEcCCCEEEEEcC
Q 015016 124 VVTEDGNSLAFGWN 137 (414)
Q Consensus 124 ~lt~~g~vy~~G~n 137 (414)
....||.|+.|-..
T Consensus 91 s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 91 TGSADYSIKLWDVS 104 (369)
T ss_dssp EEETTTEEEEEETT
T ss_pred EEeCCCeEEEEECC
Confidence 66788999999753
No 71
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=38.65 E-value=3.1e+02 Score=27.29 Aligned_cols=232 Identities=9% Similarity=0.039 Sum_probs=110.3
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEe--ecCCeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAG--AGRSHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~--~G~~~~~~lt~~g~vy~~ 134 (414)
.|..++........++-..+|.|..|-..... ....+.. ....|..++ ......++-+.+|.|++|
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~-----------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV-----------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE-----------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCc-----------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 67777776545555666678888888643211 1111221 122344443 334556666788999999
Q ss_pred EcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeE-EEecccCCeEEEecCCCCCcccCCCCCCCcccCcccccc
Q 015016 135 GWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTV-WLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDSSVKLA 213 (414)
Q Consensus 135 G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~-~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~~~~~~ 213 (414)
-......+ .........|..++...+... +....+| .|..|-......
T Consensus 83 ~~~~~~~~-----------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~------------------- 131 (814)
T 3mkq_A 83 NYNTGEKV-----------VDFEAHPDYIRSIAVHPTKPYVLSGSDDL-TVKLWNWENNWA------------------- 131 (814)
T ss_dssp ETTTCCEE-----------EEEECCSSCEEEEEECSSSSEEEEEETTS-EEEEEEGGGTSE-------------------
T ss_pred ECCCCcEE-----------EEEecCCCCEEEEEEeCCCCEEEEEcCCC-EEEEEECCCCce-------------------
Confidence 75432111 111112234666665544433 3332566 888884332100
Q ss_pred cccCCCceeecccCCCcEEEEEccC---CceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEE
Q 015016 214 YEAQPRPRAIAALAGETIVKVACGT---NHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVI 290 (414)
Q Consensus 214 ~~~~~~~~~~~~~~~~~i~~I~~g~---~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i 290 (414)
....+. .....|..++... ...+.-..+|.|+.|-..... ....+..... ..+..+
T Consensus 132 -----~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-----------~~~~~~~~~~----~~v~~~ 190 (814)
T 3mkq_A 132 -----LEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST-----------PNFTLTTGQE----RGVNYV 190 (814)
T ss_dssp -----EEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS-----------CSEEEECCCT----TCCCEE
T ss_pred -----EEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------ceeEEecCCC----CCEEEE
Confidence 001111 1123466666543 344455678999999643210 0111111110 122234
Q ss_pred Ee----cCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCc--eEEEEe-CCCEEEecCCC
Q 015016 291 SA----GSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM--HHFVGA-DSSCISWGHAQ 358 (414)
Q Consensus 291 ~~----g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~--h~~~l~-~g~vy~wG~n~ 358 (414)
+. .....++-..+|.|..|-.... .....+.. ....|..+..... ..++.. ||.|+.|-...
T Consensus 191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 191 DYYPLPDKPYMITASDDLTIKIWDYQTK-----SCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECCSTTCCEEEEECTTSEEEEEETTTT-----EEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEECCCCCEEEEEeCCCEEEEEECCCC-----cEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 33 2334455567888999954221 11112221 2235666655433 233333 89999995543
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=38.44 E-value=2.1e+02 Score=25.26 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=22.1
Q ss_pred CcEEEEeecCCeEEEEEcCCCEEEEEcCC
Q 015016 110 YKIKKAGAGRSHTVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 110 ~~i~~i~~G~~~~~~lt~~g~vy~~G~n~ 138 (414)
..|..|+......+.-..||.|+.|-...
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~ 45 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKL 45 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBC
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCC
Confidence 46777877777777778899999997543
No 73
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=38.17 E-value=2.2e+02 Score=25.38 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCc--eeeccCCCCcEEEEeecC-----CeEEEEEcCC
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAGR-----SHTVVVTEDG 129 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~i~~G~-----~~~~~lt~~g 129 (414)
.+..+.......+.+++|+.|++|..-... |........-.| ..++..++.+|+.+.... ...+++|++|
T Consensus 43 ~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~---lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G 119 (327)
T 3uc1_A 43 IVAHFFVCSTHDLILFFTTQGRVYRAKAYD---LPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNG 119 (327)
T ss_dssp CEEEEEEEETTSEEEEEETTSEEEEEEGGG---SCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTS
T ss_pred EEEEEEEeCCCCEEEEEeCCCeEEEEEHHH---CcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCC
Confidence 455554444478889999999999887432 211111111122 223333567888877654 4678899999
Q ss_pred CEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceE--EEEeCCCeeEEEecccCCeEEEecCC--CCCcccCCCCCCCcc
Q 015016 130 NSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVT--ATACGADFTVWLSSVEGASILNAGLP--QYGQLGHGTDNEYNT 205 (414)
Q Consensus 130 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~--~is~G~~~~~~l~~~~g~~v~~~G~n--~~gqlG~~~~~~~~~ 205 (414)
.+.-.-..++-.... .......++. .+.+. .+..+.++.++++ ++| ++|.+--. +--.+|......
T Consensus 120 ~iKr~~l~~~~~~~r----~G~~~i~lke-~D~lv~~~~~~~~d~ill~T-~~G-~~~rf~~~~~eip~~gr~a~Gv--- 189 (327)
T 3uc1_A 120 LVKKSKLTDFDSNRS----GGIVAVNLRD-NDELVGAVLCSAGDDLLLVS-ANG-QSIRFSATDEALRPMGRATSGV--- 189 (327)
T ss_dssp EEEEEEGGGGCCCCS----SCEESCBCCT-TCCEEEEEEECTTCEEEEEE-TTS-EEEEEECCTTTSCCCCTTSBCE---
T ss_pred EEEEeEHHHhhcccc----CceEEEEECC-CCEEEEEEEecCCCEEEEEE-CCC-eEEEEECcccccCcCCcCCCCe---
Confidence 888766443321100 0000000000 12222 2334556666677 888 99988766 443333322110
Q ss_pred cCcccccccccCCCceeecccCCCcEEEEEccC--CceEEEeCCCCEEEee
Q 015016 206 KDSSVKLAYEAQPRPRAIAALAGETIVKVACGT--NHTVAVDSKGYVYTWG 254 (414)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~--~~~~~lt~~G~vy~wG 254 (414)
..+..-.++.|+.+..-. .+.+.+|++|.+.-.-
T Consensus 190 ---------------~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~ 225 (327)
T 3uc1_A 190 ---------------QGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTA 225 (327)
T ss_dssp ---------------ESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred ---------------eeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEE
Confidence 011112356677766553 3567778888666543
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=36.79 E-value=2.2e+02 Score=25.11 Aligned_cols=51 Identities=6% Similarity=0.013 Sum_probs=26.9
Q ss_pred EeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCC--ceEEEE-e-CCCEEEecC
Q 015016 300 TAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGN--MHHFVG-A-DSSCISWGH 356 (414)
Q Consensus 300 l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~--~h~~~l-~-~g~vy~wG~ 356 (414)
-..++.|+.|-.... .+..........|..++... ...++. . |+.|+.|-.
T Consensus 245 g~~d~~i~~wd~~~~------~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 245 GDETGNVSLVNIKNP------DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EESSSCEEEEESSCG------GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred eecccceeEEECCCC------cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 367888999853211 01111112223577776542 233443 3 899999943
No 75
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=34.88 E-value=2.2e+02 Score=24.53 Aligned_cols=209 Identities=11% Similarity=0.060 Sum_probs=107.1
Q ss_pred CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec---CCeEEEEEcCCC
Q 015016 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG---RSHTVVVTEDGN 130 (414)
Q Consensus 54 ~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~~~~lt~~g~ 130 (414)
.+..+..+.......+.+++|++|++|.--... |.... .. . + ..++.+|+.+.+- ....+++|++|.
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~~---~~--~-l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQGS---KV--S-L-KSREEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHH---HHTSE---EC--C-C-SSTTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccCc---cc--c-c-CCCCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 444566665554467789999999999865321 11000 00 0 3 2346678887662 357889999998
Q ss_pred EEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEE--eCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCc
Q 015016 131 SLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATA--CGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208 (414)
Q Consensus 131 vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is--~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~ 208 (414)
+.-.-..++-+-.. ......++. .+.+..+. .+.+..++++ ++| ++|.+-..+.-.+|......
T Consensus 92 iKr~~l~~~~~~~~-----G~~~i~lke-gD~l~~~~~~~~~~~ill~T-~~G-~~~r~~~~eip~~gR~a~Gv------ 157 (276)
T 3no0_A 92 VKKIPLAEFEYKAQ-----GMPIIKLTE-GDEVVSIASSVDETHILLFT-KKG-RVARFSVREVPPSTPGARGV------ 157 (276)
T ss_dssp EEEEEGGGTTTCST-----TEECSCCCT-TCCEEEEEECCSSCEEEEEE-TTS-EEEEEEGGGSCBCCTTCCCE------
T ss_pred EEEEEHHHhhhhcC-----CeEEEecCC-CCEEEEEEEeCCCCEEEEEE-CCC-EEEEEEhhhCCCcCCCCCCE------
Confidence 88776544421100 000000100 12233332 2444566666 888 99998665544444322110
Q ss_pred ccccccccCCCceeecccCCCcEEEEEcc--CCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCC
Q 015016 209 SVKLAYEAQPRPRAIAALAGETIVKVACG--TNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPP 286 (414)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~i~~I~~g--~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~ 286 (414)
. .+..-.+++|+.+... ..+.+++|++|.+.-.--.++-..+.+....... .... .
T Consensus 158 --------~----~i~L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-------~~~~---~ 215 (276)
T 3no0_A 158 --------Q----GIKLEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-------GTKD---T 215 (276)
T ss_dssp --------E----CCCCCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-------CSSS---C
T ss_pred --------E----EEccCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-------cCCC---c
Confidence 0 0111234567765544 3456778899988776555543333321111110 0100 1
Q ss_pred ccEE--EecCCceEEEeCCCCEEE
Q 015016 287 EAVI--SAGSVNSSCTAGGGQLYM 308 (414)
Q Consensus 287 i~~i--~~g~~~s~~l~~~g~v~~ 308 (414)
++.+ ..+....++++++|.+..
T Consensus 216 lv~~~~~~~~~~i~~~t~~G~~ir 239 (276)
T 3no0_A 216 LVDLIPIKEEVELLITTKNGKAFY 239 (276)
T ss_dssp EEEEEEESSEEEEEEEETTSCEEE
T ss_pred EEEEEEeCCCCEEEEEcCCCeEEE
Confidence 1122 224456777888888776
No 76
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=34.57 E-value=1.3e+02 Score=26.54 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=13.1
Q ss_pred CceEEEEeCCCEEEecC
Q 015016 340 NMHHFVGADSSCISWGH 356 (414)
Q Consensus 340 ~~h~~~l~~g~vy~wG~ 356 (414)
..|+++..++++|++|-
T Consensus 110 ~~~~~~~~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFVHNGKAYVTGG 126 (357)
T ss_dssp SSEEEEEETTEEEEEEC
T ss_pred ccceEEEECCEEEEEeC
Confidence 35666667999999995
No 77
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=33.91 E-value=2.2e+02 Score=24.26 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=29.5
Q ss_pred ceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEe----cCCceEEEEeCCCEEEecCC
Q 015016 296 NSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMD----SGNMHHFVGADSSCISWGHA 357 (414)
Q Consensus 296 ~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~----~g~~h~~~l~~g~vy~wG~n 357 (414)
|+++. -++++|+.|-................+.......+. .-..|+++..++++|++|-.
T Consensus 149 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 213 (302)
T 2xn4_A 149 VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGH 213 (302)
T ss_dssp CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCC
Confidence 34443 478999998532211110111111122222333332 12356666669999999853
No 78
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=31.98 E-value=2.6e+02 Score=24.53 Aligned_cols=182 Identities=16% Similarity=0.138 Sum_probs=94.2
Q ss_pred CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec-----CCeEEEEEcC
Q 015016 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG-----RSHTVVVTED 128 (414)
Q Consensus 54 ~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~~~~lt~~ 128 (414)
.+..+..+.......+.+++|+.|++|..-...-=..+.... -.+....++..++.+|+.+... ..+.+++|++
T Consensus 45 e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~-G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 45 DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK-GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC-CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCC
Confidence 344566655544478899999999999987543211111000 0011123333445677777654 3568899999
Q ss_pred CCEEEEEcCCCCCC-CCCCCCCcccCcCeeeeccceEEEE--eCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcc
Q 015016 129 GNSLAFGWNKHGQL-GSGSIRNEIEPSPVRCLVSEVTATA--CGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNT 205 (414)
Q Consensus 129 g~vy~~G~n~~gql-g~~~~~~~~~~~~~~~~~~~i~~is--~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~ 205 (414)
|.++-.-..++-.. +.+ .....+.. .+.+..+. .+....++++ ++| .+..+-..+.-.+|.....
T Consensus 124 G~~kr~~l~~~~~~r~~G-----~~~i~L~~-~d~lv~~~~~~~~~~i~l~T-~~G-~~~r~~~~ev~~~gR~~~G---- 191 (312)
T 1suu_A 124 GKIARFESTDFKAVKSRG-----VIVIKLND-KDFVTSAEIVFKDEKVICLS-KKG-SAFIFNSRDVRLTNRGTQG---- 191 (312)
T ss_dssp SEEEEEEGGGGCC----C-----EECBCCCT-TCCEEEEEEECTTCEEEEEE-TTS-EEEEEEGGGSCBCCTTBCC----
T ss_pred CeEEEEEHHHhhccCCCc-----EEEEecCC-CCEEEEEEEeCCCCEEEEEe-CCC-cEEEEEHHHccccCCCCCC----
Confidence 99998865444111 111 00011111 12333332 3455566666 888 8887765554333332111
Q ss_pred cCcccccccccCCCceeeccc-CCCcEEEEEc--cCCceEEEeCCCCEEEeeCCCCCCcCC
Q 015016 206 KDSSVKLAYEAQPRPRAIAAL-AGETIVKVAC--GTNHTVAVDSKGYVYTWGFGGYGRLGH 263 (414)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~-~~~~i~~I~~--g~~~~~~lt~~G~vy~wG~n~~gqlg~ 263 (414)
.+...+ .++.++.+.. ...+.++++++|.+...-..++-..++
T Consensus 192 ---------------v~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 192 ---------------VCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp ---------------EECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ---------------eEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 111111 2345665543 344567788888777666555544444
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=29.08 E-value=3.1e+02 Score=24.43 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=56.7
Q ss_pred EEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcCCCEEEEEcCC
Q 015016 61 VAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAFGWNK 138 (414)
Q Consensus 61 i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~~G~n~ 138 (414)
++.. ..+.++...+|.|+.|-.... + ....+.......|..++.. ..+.++-+.+|.|..|-...
T Consensus 99 ~~~s--~~~l~~~~~d~~v~lw~~~~~-~----------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 99 LDWS--NLNVVAVALERNVYVWNADSG-S----------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp EEEC--TTSEEEEEETTEEEEEETTTC-C----------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred Eeec--CCCEEEEECCCeEEEeeCCCC-c----------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 4444 456778888999999986431 1 1112222123456666553 34555666789999997533
Q ss_pred CCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCC
Q 015016 139 HGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLP 190 (414)
Q Consensus 139 ~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n 190 (414)
...+ .........|..++...+..+.-. .+| .|+.|-..
T Consensus 166 ~~~~-----------~~~~~~~~~v~~~~~~~~~l~~~~-~dg-~i~i~d~~ 204 (401)
T 4aez_A 166 QTKL-----------RTMAGHQARVGCLSWNRHVLSSGS-RSG-AIHHHDVR 204 (401)
T ss_dssp CCEE-----------EEECCCSSCEEEEEEETTEEEEEE-TTS-EEEEEETT
T ss_pred CeEE-----------EEecCCCCceEEEEECCCEEEEEc-CCC-CEEEEecc
Confidence 2110 111112234666666444333333 677 89988544
No 80
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=25.73 E-value=4.2e+02 Score=24.90 Aligned_cols=27 Identities=11% Similarity=0.245 Sum_probs=16.4
Q ss_pred cEEEEEcc-CCceEEEeCCCCEEEeeCC
Q 015016 230 TIVKVACG-TNHTVAVDSKGYVYTWGFG 256 (414)
Q Consensus 230 ~i~~I~~g-~~~~~~lt~~G~vy~wG~n 256 (414)
.|..++.. ....+....+|.|..|-..
T Consensus 255 ~v~~~~~~~~~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGADATIRVWDVT 282 (615)
T ss_dssp CEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred ceEEEEEcCCCEEEEEcCCCcEEEEECC
Confidence 46666553 3344445578889998543
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=24.72 E-value=3.5e+02 Score=23.62 Aligned_cols=254 Identities=9% Similarity=0.039 Sum_probs=114.7
Q ss_pred CCCeEEEEEcC-CCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeecC-----CeEEEEEcC
Q 015016 55 GVDIRFVAAGC-VSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAGR-----SHTVVVTED 128 (414)
Q Consensus 55 ~~~i~~i~~g~-~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~~~~lt~~ 128 (414)
...|..++... +....+.-..+|.|..|-..... +...... ...+..+.... ...++-+.+
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ------------TADVFNF-EETVYSHHMSPVSTKHCLVAVGTRG 165 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE------------EEEEEEC-SSCEEEEEECSSCSSCCEEEEEESS
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc------------cceeccC-CCceeeeEeecCCCCCcEEEEEcCC
Confidence 34677777753 34456666778999999744311 1111111 12344444332 255666788
Q ss_pred CCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCee--EEEecccCCeEEEecCCCCCcccCCCCCCCccc
Q 015016 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFT--VWLSSVEGASILNAGLPQYGQLGHGTDNEYNTK 206 (414)
Q Consensus 129 g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~--~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~ 206 (414)
|.|+.|-......+ .........|..++...... ++....+| .|+.|-.......-........
T Consensus 166 ~~v~~~d~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~-- 231 (408)
T 4a11_B 166 PKVQLCDLKSGSCS-----------HILQGHRQEILAVSWSPRYDYILATASADS-RVKLWDVRRASGCLITLDQHNG-- 231 (408)
T ss_dssp SSEEEEESSSSCCC-----------EEECCCCSCEEEEEECSSCTTEEEEEETTS-CEEEEETTCSSCCSEECCTTTT--
T ss_pred CeEEEEeCCCccee-----------eeecCCCCcEEEEEECCCCCcEEEEEcCCC-cEEEEECCCCCccccccccccc--
Confidence 99999975432111 11111223466666544432 33333677 8888865432211000000000
Q ss_pred CcccccccccCCCceeecccCCCcEEEEEccCC--ceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCC
Q 015016 207 DSSVKLAYEAQPRPRAIAALAGETIVKVACGTN--HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVL 284 (414)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~i~~I~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~ 284 (414)
................|..++.... +.++...+|.|+.|-.......-...... .. ... .
T Consensus 232 --------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~-~~~---~ 293 (408)
T 4a11_B 232 --------KKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV------CN-NSK---K 293 (408)
T ss_dssp --------CSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCC------CC-CCS---S
T ss_pred --------ccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccc------cc-ccc---c
Confidence 0000000000111235666666544 45555688999999755422111100000 00 000 0
Q ss_pred CCccEEE-ecCCceEEEeCCCCEEEccCCCCCCCceeeeeecccCCCCceEEEecCCc--eEEEEe-CCCEEEecCCCC
Q 015016 285 PPEAVIS-AGSVNSSCTAGGGQLYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM--HHFVGA-DSSCISWGHAQY 359 (414)
Q Consensus 285 ~~i~~i~-~g~~~s~~l~~~g~v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~--h~~~l~-~g~vy~wG~n~~ 359 (414)
.....+. ......++...++.++.|-.... .+..........|..++...+ +.+... ||.|..|-....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG------EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCCCEECCSSSSCEEEEEETTEEEEEETTTC------CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cceeEEecCCCceEEEEecCCEEEEEECcCC------cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 0001222 22334555567889999864321 111111112235666665433 333333 899999966554
No 82
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=23.67 E-value=2.5e+02 Score=21.53 Aligned_cols=68 Identities=4% Similarity=-0.097 Sum_probs=41.6
Q ss_pred CCCcEEEEeecC-CeEEEEEcCCCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeC-CCeeEEEecccCCeEE
Q 015016 108 SKYKIKKAGAGR-SHTVVVTEDGNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACG-ADFTVWLSSVEGASIL 185 (414)
Q Consensus 108 ~~~~i~~i~~G~-~~~~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G-~~~~~~l~~~~g~~v~ 185 (414)
+.....++-|-. .+.+-+..||.|=....... ......+......++.|.|- ....+++. .+| +||
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~----------~~s~lei~sv~~G~V~L~g~~sg~yL~mn-~~G-~l~ 95 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDRSD----------THIQFQISPEGNGEVLLKSTETGQYLRIN-PDG-TVD 95 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCTTC----------GGGCEEEEEEETTEEEEEETTTTEEEEEC-TTS-BEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCCCC----------CceEEEEEEccCCEEEEEEecCCEEEeEC-CCC-CEe
Confidence 355788888876 67778889999986543211 11222222223347777775 44555666 788 999
Q ss_pred Ee
Q 015016 186 NA 187 (414)
Q Consensus 186 ~~ 187 (414)
+-
T Consensus 96 Gs 97 (142)
T 3p6j_A 96 GT 97 (142)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=23.62 E-value=4.6e+02 Score=24.61 Aligned_cols=196 Identities=9% Similarity=0.058 Sum_probs=94.2
Q ss_pred CCeEEEEEcCCCc-eEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCC---cEEEEeecC---CeEEEEEcC
Q 015016 56 VDIRFVAAGCVSC-HCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKY---KIKKAGAGR---SHTVVVTED 128 (414)
Q Consensus 56 ~~i~~i~~g~~~~-~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~---~i~~i~~G~---~~~~~lt~~ 128 (414)
..|..++...... ..+.-..||.|+.|-.... + ....+.. ... .|..++... ...+.-+.+
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-~----------~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-K----------FSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-E----------EEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-c----------eeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 3566676654332 4556677889999963221 0 0111111 122 576666653 355556788
Q ss_pred CCEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEEEeCCCeeEEEecccCCeEEEecCCCCCcccCCCCCCCcccCc
Q 015016 129 GNSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTATACGADFTVWLSSVEGASILNAGLPQYGQLGHGTDNEYNTKDS 208 (414)
Q Consensus 129 g~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~is~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~~~~~~~~~~~~ 208 (414)
|.|+.|-......+.. ...+.......|..++......++....+| .|..|-..+...+.
T Consensus 229 g~i~vwd~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~------------ 288 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKY-------IEDDQEPVQGGIFALSWLDSQKFATVGADA-TIRVWDVTTSKCVQ------------ 288 (615)
T ss_dssp CCEEEEETTTCCEEEE-------CCBTTBCCCSCEEEEEESSSSEEEEEETTS-EEEEEETTTTEEEE------------
T ss_pred CeEEEEECCCCCEeEE-------ecccccccCCceEEEEEcCCCEEEEEcCCC-cEEEEECCCCcEEE------------
Confidence 9999997532211100 000000122346666554233333332566 88888544211000
Q ss_pred ccccccccCCCceeecccCCCcEEEEEc-cCCceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCc
Q 015016 209 SVKLAYEAQPRPRAIAALAGETIVKVAC-GTNHTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPE 287 (414)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~i~~I~~-g~~~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i 287 (414)
.+..... .. ...+..+.. .....++...+|.|+.|-... ...+..+.. ....+
T Consensus 289 ----~~~~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~--------------~~~~~~~~~--~~~~v 342 (615)
T 1pgu_A 289 ----KWTLDKQ-----QL-GNQQVGVVATGNGRIISLSLDGTLNFYELGH--------------DEVLKTISG--HNKGI 342 (615)
T ss_dssp ----EEECCTT-----CG-GGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------EEEEEEECC--CSSCE
T ss_pred ----EEcCCCC-----cc-cCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------CcEEEEEeC--CCCCE
Confidence 0000000 00 012333332 455566667889999995332 112222221 12245
Q ss_pred cEEEecCCceEEEeCCCCEEEccC
Q 015016 288 AVISAGSVNSSCTAGGGQLYMWGK 311 (414)
Q Consensus 288 ~~i~~g~~~s~~l~~~g~v~~wG~ 311 (414)
..++. .. .+.-..+|.+..|-.
T Consensus 343 ~~~~~-~~-l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 343 TALTV-NP-LISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEET-TT-TEEEETTSCEEETTT
T ss_pred EEEEe-cC-cEEECCCCeEEEEEc
Confidence 56666 55 666678899999964
No 84
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=22.85 E-value=3.7e+02 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=8.9
Q ss_pred ceEEEeCCCCEEEeeC
Q 015016 240 HTVAVDSKGYVYTWGF 255 (414)
Q Consensus 240 ~~~~lt~~G~vy~wG~ 255 (414)
+.++++.+|.||+...
T Consensus 295 ~~ia~~~dG~lyvad~ 310 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDA 310 (329)
T ss_dssp EEEEECTTSEEEEEES
T ss_pred eEEEECCCCCEEEEEC
Confidence 3455666666665543
No 85
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.81 E-value=3.5e+02 Score=22.92 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCc--eeeccCCCCcEEEEeec--CCeEEEEEcCC
Q 015016 54 VGVDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRP--TIVSELSKYKIKKAGAG--RSHTVVVTEDG 129 (414)
Q Consensus 54 ~~~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p--~~v~~~~~~~i~~i~~G--~~~~~~lt~~g 129 (414)
.+..+..+.......+.+++|+.|++|..-.... -.. ...-.| ..++..++.+|+.+... ..+.+++|++|
T Consensus 31 e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~el---p~~--r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G 105 (256)
T 1zvt_A 31 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL---PSA--RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 105 (256)
T ss_dssp TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGS---CCS--SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTS
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHC---CCc--CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCC
Confidence 3446666554444678999999999999886542 111 111111 12333346678877663 44578889999
Q ss_pred CEEEEEcCCCCCCCCCCCCCcccCcCeeeeccceEEE--E-eCCCeeEEEecccCCeEEEecCCCCCcccC
Q 015016 130 NSLAFGWNKHGQLGSGSIRNEIEPSPVRCLVSEVTAT--A-CGADFTVWLSSVEGASILNAGLPQYGQLGH 197 (414)
Q Consensus 130 ~vy~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~i~~i--s-~G~~~~~~l~~~~g~~v~~~G~n~~gqlG~ 197 (414)
.+.-.-..++-....+.. ....++. .+.+..+ . .+.+..++++ ++| .+..+-.++.-.+|.
T Consensus 106 ~~Kr~~~~e~~~~~r~G~----~~i~L~~-~d~lv~~~~~~~~~~~i~l~T-~~G-~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 106 YGFVCTFNDLVARNRAGK----ALITLPE-NAHVMPPVVIEDASDMLLAIT-QAG-RMLMFPVSDLPQLSK 169 (256)
T ss_dssp EEEEEEGGGGCCCSTTCE----ECBCCCT-TCCBCCCEECCCTTCEEEEEE-TTS-EEEEEEGGGSCBCSS
T ss_pred eEEEeEHHHhcccCcCce----EEEEECC-CCEEEEEEEecCCCCEEEEEc-CCC-eEEEEEHHHCCCcCc
Confidence 888776544411111100 0000000 1122221 1 3566677777 888 888876665544443
No 86
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=22.57 E-value=4.8e+02 Score=24.39 Aligned_cols=66 Identities=9% Similarity=0.068 Sum_probs=35.5
Q ss_pred CeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcCCCEEEE
Q 015016 57 DIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLAF 134 (414)
Q Consensus 57 ~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~~ 134 (414)
.|..++........+.-..||.|..|-.+.. ....+.. ....|..++.. ..+.+.-.++|.|..|
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~------------~~~~~~~-~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ------------HLQTLTG-HSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSC------------EEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCC------------eeEEEeC-CCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 5666766543445555667788888863321 1111221 12345555443 3445555677888887
Q ss_pred E
Q 015016 135 G 135 (414)
Q Consensus 135 G 135 (414)
-
T Consensus 372 ~ 372 (577)
T 2ymu_A 372 N 372 (577)
T ss_dssp E
T ss_pred c
Confidence 5
No 87
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=21.49 E-value=4e+02 Score=23.04 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=47.8
Q ss_pred cEEEEEccCC--ceEEEeCCCCEEEeeCCCCCCcCCCCCCCccceEEeeecccCCCCCCccEEEecC--CceEEEeCCCC
Q 015016 230 TIVKVACGTN--HTVAVDSKGYVYTWGFGGYGRLGHREQKDEWVPRRVDVFQRNNVLPPEAVISAGS--VNSSCTAGGGQ 305 (414)
Q Consensus 230 ~i~~I~~g~~--~~~~lt~~G~vy~wG~n~~gqlg~~~~~~~~~p~~i~~~~~~~~~~~i~~i~~g~--~~s~~l~~~g~ 305 (414)
.|..++.... ..+.-..+|.|..|-.... ..+..+........+..++... ...++-..+|.
T Consensus 228 ~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 228 DINAICFFPNGNAFATGSDDATCRLFDLRAD--------------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred CEEEEEEcCCCCEEEEEcCCCcEEEEECCCC--------------cEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 4656655433 3334457888888854321 1111111111111233444333 23344457888
Q ss_pred EEEccCCCCCCCceeeeeecccCCCCceEEEecCCc-eEEEE-e-CCCEEEe
Q 015016 306 LYMWGKLKNNGDDWMYPKPLMDLSGWNLRCMDSGNM-HHFVG-A-DSSCISW 354 (414)
Q Consensus 306 v~~wG~~~~~~~~~~~p~~~~~~~~~~i~~i~~g~~-h~~~l-~-~g~vy~w 354 (414)
|..|-..... ....+.. ....|..++...+ ..++. . |+.|..|
T Consensus 294 i~vwd~~~~~-----~~~~~~~-h~~~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 294 CNVWDALKAD-----RAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EEEEETTTCC-----EEEEEEC-CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEEEcccCc-----EeeEeec-CCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence 8888542210 0111111 1225666665443 23333 2 7888887
No 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=20.66 E-value=4.1e+02 Score=22.86 Aligned_cols=71 Identities=8% Similarity=-0.004 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCceEEEEeCCCCEEEEeCCCCCCCcCCCCCCCCCceeeccCCCCcEEEEeec--CCeEEEEEcCCCEEE
Q 015016 56 VDIRFVAAGCVSCHCVAVDVEGRCYTWGRNERGQLGHGDKIQRDRPTIVSELSKYKIKKAGAG--RSHTVVVTEDGNSLA 133 (414)
Q Consensus 56 ~~i~~i~~g~~~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~lt~~g~vy~ 133 (414)
..|..++......+.++-..+|.|+.|-..... ......+.. ....|..++.. ....+.-..||.|..
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~v 78 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------WVQVHELKE-HNGQVTGVDWAPDSNRIVTCGTDRNAYV 78 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------EEEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------EEeeeeecC-CCCcccEEEEeCCCCEEEEEcCCCeEEE
Confidence 355666665434444444578888888643210 001111211 12346555544 344555567888888
Q ss_pred EEc
Q 015016 134 FGW 136 (414)
Q Consensus 134 ~G~ 136 (414)
|-.
T Consensus 79 wd~ 81 (372)
T 1k8k_C 79 WTL 81 (372)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
No 89
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=20.03 E-value=4.2e+02 Score=22.80 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=15.4
Q ss_pred CceEEEEeCCCCEEEEeCCC
Q 015016 67 SCHCVAVDVEGRCYTWGRNE 86 (414)
Q Consensus 67 ~~~~~~lt~~g~vy~wG~n~ 86 (414)
.-..++++.+|++|+.+...
T Consensus 25 ~v~~va~d~~G~l~v~~~~~ 44 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGD 44 (329)
T ss_dssp CEEEEEECTTCCEEEEECTT
T ss_pred CceEEEECCCCCEEEEeCCC
Confidence 44667888899999888654
Done!