Query 015017
Match_columns 414
No_of_seqs 323 out of 1225
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 05:12:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cg7_A CRN-4, cell death-relat 100.0 2.3E-45 7.8E-50 363.6 22.8 252 119-387 9-285 (308)
2 1w0h_A 3'-5' exonuclease ERI1; 100.0 8.8E-38 3E-42 288.8 22.5 192 135-326 9-204 (204)
3 2xri_A ERI1 exoribonuclease 3; 100.0 1.7E-37 5.9E-42 293.0 23.0 186 135-324 30-221 (224)
4 1zbh_A 3'-5' exonuclease ERI1; 100.0 9.2E-36 3.1E-40 293.2 25.1 205 136-341 78-290 (299)
5 1zbu_A ERI-1 homolog, 3'-5' ex 100.0 2.7E-35 9.3E-40 296.2 22.6 207 136-343 128-342 (349)
6 2p1j_A POLIII, DNA polymerase 100.0 2E-33 7E-38 257.6 18.3 168 136-320 12-179 (186)
7 2gui_A DNA polymerase III epsi 100.0 3.3E-33 1.1E-37 256.8 18.5 172 136-318 9-186 (194)
8 3mxm_B Three prime repair exon 100.0 3E-32 1E-36 260.8 13.6 173 136-317 12-215 (242)
9 2f96_A Ribonuclease T; RNAse, 100.0 1.4E-30 4.8E-35 245.1 17.8 177 136-318 29-214 (224)
10 3u3y_B Three prime repair exon 100.0 4.4E-31 1.5E-35 261.9 14.8 173 136-317 12-215 (314)
11 1y97_A Three prime repair exon 100.0 9.8E-30 3.4E-34 240.7 17.9 174 136-319 10-212 (238)
12 3v9w_A Ribonuclease T; DEDD nu 100.0 3E-29 1E-33 237.4 17.3 178 136-319 37-223 (235)
13 2igi_A Oligoribonuclease; RNAs 99.9 7.2E-28 2.5E-32 218.7 11.6 165 135-317 4-177 (180)
14 1wlj_A Interferon stimulated g 99.9 7.1E-28 2.4E-32 221.4 9.2 156 136-317 5-169 (189)
15 2qxf_A Exodeoxyribonuclease I; 99.9 1.6E-26 5.6E-31 241.1 15.0 168 136-317 9-201 (482)
16 2gbz_A Oligoribonuclease; ORN, 99.9 9.7E-27 3.3E-31 214.9 11.6 164 136-318 9-182 (194)
17 3tr8_A Oligoribonuclease; tran 99.9 2.2E-26 7.7E-31 212.5 9.9 165 136-318 9-182 (186)
18 4hec_A Putative uncharacterize 98.8 3.3E-08 1.1E-12 91.3 12.3 154 137-316 23-181 (190)
19 2kfn_A Klenow fragment of DNA 98.7 2.9E-07 9.9E-12 98.4 15.5 147 136-319 26-195 (605)
20 4gmj_B CCR4-NOT transcription 98.5 1.9E-06 6.4E-11 84.2 16.6 173 136-318 34-246 (285)
21 1x9m_A DNA polymerase; DNA plo 98.3 2.1E-06 7.3E-11 93.2 10.8 141 138-320 1-186 (698)
22 2d5r_A CCR4-NOT transcription 98.3 3.5E-05 1.2E-09 74.0 17.4 174 136-319 24-237 (252)
23 1uoc_A POP2; hydrolase, DEDD n 98.2 2.2E-05 7.5E-10 76.8 15.9 173 136-317 38-265 (289)
24 2p51_A SPCC18.06C protein; DED 98.2 3.1E-05 1.1E-09 76.9 17.0 172 136-317 45-256 (333)
25 1qht_A Protein (DNA polymerase 98.0 0.00016 5.6E-09 79.4 17.3 152 136-314 135-327 (775)
26 3f2b_A DNA-directed DNA polyme 97.7 6.7E-06 2.3E-10 92.4 1.9 54 44-105 129-182 (1041)
27 3iay_A DNA polymerase delta ca 97.5 0.0013 4.3E-08 73.7 15.5 156 137-313 250-465 (919)
28 1noy_A Protein (DNA polymerase 97.3 0.0026 8.9E-08 64.2 14.3 165 137-313 107-335 (388)
29 1s5j_A DNA polymerase I; repli 97.2 0.0016 5.5E-08 72.2 12.3 155 137-310 191-386 (847)
30 2gv9_A DNA polymerase; polymer 97.2 0.0029 1E-07 72.5 13.9 169 137-313 321-550 (1193)
31 2hnh_A DNA polymerase III alph 97.1 0.00012 4E-09 81.8 1.8 54 44-105 19-72 (910)
32 3d45_A Poly(A)-specific ribonu 96.8 0.015 5E-07 60.9 14.5 85 230-318 277-393 (507)
33 4dfk_A DNA polymerase I, therm 96.7 0.0057 2E-07 64.5 10.1 118 137-317 11-128 (540)
34 3o0f_A Putative metal-dependen 96.5 0.00079 2.7E-08 66.1 2.0 53 44-104 25-77 (301)
35 2hpi_A DNA polymerase III alph 96.4 0.00078 2.7E-08 77.0 1.2 54 44-105 20-75 (1220)
36 2yb1_A Amidohydrolase; HET: AM 95.8 0.0031 1.1E-07 61.0 2.3 53 44-104 14-66 (292)
37 3qex_A DNA polymerase, GP43; d 95.6 0.095 3.3E-06 58.4 13.4 167 136-312 108-337 (903)
38 3e38_A Two-domain protein cont 95.1 0.005 1.7E-07 61.4 0.8 62 44-105 31-96 (343)
39 3k59_A POL II, DNA polymerase 94.5 0.98 3.4E-05 49.6 17.1 148 137-313 154-349 (786)
40 3pv8_A DNA polymerase I; DNA p 91.5 0.45 1.5E-05 50.6 8.6 132 136-316 29-180 (592)
41 1m65_A Hypothetical protein YC 89.4 0.12 4.2E-06 47.5 1.7 54 45-105 16-76 (245)
42 3saf_A Exosome component 10; e 89.3 5.6 0.00019 40.5 14.2 133 136-317 129-277 (428)
43 3b0x_A DNA polymerase beta fam 89.0 0.11 3.8E-06 54.9 1.2 61 45-105 350-416 (575)
44 2py5_A DNA polymerase; protein 88.7 1.4 4.9E-05 46.6 9.6 132 136-316 6-183 (575)
45 2yxo_A Histidinol phosphatase; 87.5 0.17 5.7E-06 47.1 1.3 61 45-105 14-83 (267)
46 2a1r_A Poly(A)-specific ribonu 81.6 7.4 0.00025 39.6 10.5 104 202-317 262-397 (430)
47 1vk0_A Hypothetical protein; h 76.6 5.6 0.00019 36.4 7.1 89 214-315 97-205 (206)
48 2w9m_A Polymerase X; SAXS, DNA 75.5 0.95 3.3E-05 47.8 1.7 61 45-105 340-404 (578)
49 1yt3_A Ribonuclease D, RNAse D 72.5 22 0.00075 35.0 10.8 90 215-317 64-170 (375)
50 2e6m_A Werner syndrome ATP-dep 66.8 19 0.00064 32.0 8.1 93 215-319 86-197 (208)
51 2anu_A Hypothetical protein TM 63.1 1 3.5E-05 42.0 -1.2 27 44-70 32-58 (255)
52 2hbj_A Exosome complex exonucl 52.1 64 0.0022 32.3 9.9 90 215-317 149-254 (410)
53 3cym_A Uncharacterized protein 49.6 61 0.0021 32.7 9.3 87 214-316 84-186 (440)
54 3dcp_A Histidinol-phosphatase; 37.9 7.5 0.00026 37.1 0.3 26 47-72 18-43 (283)
55 2wje_A CPS4B, tyrosine-protein 37.0 7.6 0.00026 35.7 0.2 54 51-105 28-87 (247)
56 2gai_A DNA topoisomerase I; zi 36.6 8.5 0.00029 41.2 0.5 23 385-412 589-611 (633)
57 2a1r_A Poly(A)-specific ribonu 36.2 65 0.0022 32.6 7.0 49 136-184 22-95 (430)
58 2fiy_A Protein FDHE homolog; F 33.5 13 0.00045 36.2 1.2 43 361-406 180-227 (309)
59 1v77_A PH1877P, hypothetical p 30.4 14 0.00049 33.4 0.9 25 45-71 13-37 (212)
60 3q7c_A Nucleoprotein; deddh ex 29.4 72 0.0025 29.6 5.3 88 138-246 59-146 (243)
61 3qy7_A Tyrosine-protein phosph 28.6 7.8 0.00027 36.6 -1.3 60 45-105 15-83 (262)
No 1
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=100.00 E-value=2.3e-45 Score=363.59 Aligned_cols=252 Identities=25% Similarity=0.401 Sum_probs=214.4
Q ss_pred cccCCCCCCCCCCCCccccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEee--EEEEeecCCCCCCCCcchhhh
Q 015017 119 YNMLTPAHPYDFQPQEFQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA--CFQTYVRPTCNQLLSDFCKDL 196 (414)
Q Consensus 119 ~~~~~~~~p~~~~~q~~~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d--~F~~lVkP~~~p~Ls~~~~~L 196 (414)
..|.+.++++ ++|||||+||||++.....+.+|||||||++|.++|++++ +|++||||...+.|+++++++
T Consensus 9 ~~m~~~~~~~-------~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~l 81 (308)
T 3cg7_A 9 TRMAYQHCPF-------DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDF 81 (308)
T ss_dssp ----CCCCCC-------SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHH
T ss_pred hhcccccCCC-------CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHH
Confidence 4466666666 4899999999998432122349999999999977899988 999999999644599999999
Q ss_pred cCCChhhhhCCCCHHHHHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC
Q 015017 197 TGIQQIQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG 276 (414)
Q Consensus 197 TGIT~e~V~~Ap~f~eVl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~ 276 (414)
||||++||++||+|++|+.+|.+|+++..+++||+++|+||+||++.||+.+|++.|+.+|..+.+|+|++.+++++++.
T Consensus 82 tGIt~e~v~~ap~~~evl~~f~~~l~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~ 161 (308)
T 3cg7_A 82 TGIPQRSIDTADTFDVVYEQFQQWLITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDR 161 (308)
T ss_dssp HCCCHHHHHTSCBHHHHHHHHHHHHHHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHH
T ss_pred cCCCHHHHhcCCCHHHHHHHHHHHHHhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999647999999999999987667899999999887752
Q ss_pred C-------CCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcCCcccccccc----cccCCCCCcccCCCCCCC
Q 015017 277 V-------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLM----WQTNDGSLTWNQFPERIF 345 (414)
Q Consensus 277 ~-------~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~~~~i~e~l~----~~~~~~~~~~~~~~~~~~ 345 (414)
. +++|.+++++||++.++++|+|++||++||+|+.+|++++..+++++.+. ++..|. ...++|+.
T Consensus 162 ~~~~~~~~~~~L~~l~~~~gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~~~~~~~~----~~~~~w~~ 237 (308)
T 3cg7_A 162 MGPKELSATTNIGKMNEYYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPL----VYNKEWRS 237 (308)
T ss_dssp HCCCCCCCCSHHHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCCGGGSSCC----CCCTTGGG
T ss_pred ccccccccCcCHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcCCcccccc----ccCccccc
Confidence 1 46899999999999987789999999999999999999999999998876 444443 34689999
Q ss_pred CCCCcccchhcccCCccc------------cccceecCCCcCcceeccCCCCCC
Q 015017 346 LPPHQLHKQMDLQNSIFQ------------YHPSCFCGVKSSKGMVRKPGPKQG 387 (414)
Q Consensus 346 ~~~~~~~~~~~~~lP~~~------------~~~~c~cg~~~~~~~~~~~gp~qg 387 (414)
++++..|+.+|.+|+.. |..||||+...... ||-|+
T Consensus 238 -~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----~~~~~ 285 (308)
T 3cg7_A 238 -SFMDAGKIFERVLPLVVTTIRAGDFRLEMYGVCRYCRKGMDVC-----GTSHQ 285 (308)
T ss_dssp -CHHHHHHHHHHHSSCEEEECCGGGCCGGGTTBCTTTCCBTTTT-----TSSCS
T ss_pred -chHHHHHHHHHhcccceeeeeccccchhhcccCCcCCCccccc-----ccccC
Confidence 99999999999999863 56799999998665 66665
No 2
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=100.00 E-value=8.8e-38 Score=288.81 Aligned_cols=192 Identities=36% Similarity=0.739 Sum_probs=168.2
Q ss_pred cccEEEEEEeeCCCCCCC-CCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHH
Q 015017 135 FQYFVVIDFEATCDKDKN-PYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEA 213 (414)
Q Consensus 135 ~~~~VV~D~ETTGl~~~~-~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eV 213 (414)
...|||||+||||++... +..++|||||||++|.++|+++++|+++|||..++.|+++++++||||++||++||+|++|
T Consensus 9 ~~~~vviD~ETTGl~~~~~~~~~~Iieigav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~v 88 (204)
T 1w0h_A 9 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV 88 (204)
T ss_dssp SSEEEECCCEECCCTTCCTTSCCCEEEEEEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred cCEEEEEEEecCCcCCCCCCCCCcEEEEEEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHHH
Confidence 468999999999984211 3579999999999987689999999999999965579999999999999999999999999
Q ss_pred HHHHHHHHhhcCC-CCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC--CCCCHHHHHHHcCC
Q 015017 214 LLRHDKWLENKGI-KNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG--VRCNLKEAVEMAGL 290 (414)
Q Consensus 214 l~~f~~fl~~~~l-v~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~--~~~~L~~l~~~~gI 290 (414)
+.+|.+|+++..+ ....++|+||+.||++.||+.+|++.|++.|.++.+|+|++.+++.+++. .+++|++++++||+
T Consensus 89 ~~~~~~~l~~~~~~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi 168 (204)
T 1w0h_A 89 LKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 168 (204)
T ss_dssp HHHHHHHHHHTTBTTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHHHHHHHcCC
Confidence 9999999998753 23456788999999623999999999999886556899999999988874 35799999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhcCCccccccc
Q 015017 291 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 326 (414)
Q Consensus 291 ~~~g~~HrALdDA~aTA~Ll~~ll~~~~~~~i~e~l 326 (414)
+.++++|+|++||++||+|+.+|++++..+.|||.+
T Consensus 169 ~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~i~~~~ 204 (204)
T 1w0h_A 169 DYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKM 204 (204)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEC
T ss_pred CCCCCccCcHHHHHHHHHHHHHHHHCCCeeeecCcC
Confidence 998778999999999999999999999999999864
No 3
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=293.00 Aligned_cols=186 Identities=39% Similarity=0.717 Sum_probs=162.7
Q ss_pred cccEEEEEEeeCCCCCCCCCC--CcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHH
Q 015017 135 FQYFVVIDFEATCDKDKNPYP--QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 212 (414)
Q Consensus 135 ~~~~VV~D~ETTGl~~~~~~~--deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~e 212 (414)
+.+|||||+||||+ ++.. ++|||||||+++..+++++++|++||+|..++.|+++++++||||++||++||+|++
T Consensus 30 ~~~~vviD~ETTGl---~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~ 106 (224)
T 2xri_A 30 YHYFLVLDFEATCD---KPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQ 106 (224)
T ss_dssp CSEEEEECCEECCC---C-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHH
T ss_pred CCeEEEEEEEcCCC---CCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHH
Confidence 35899999999998 3433 599999999999655799999999999996557999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcE--EEEEcCcchHHHH-HHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHHHc
Q 015017 213 ALLRHDKWLENKGIKNTNF--AVVTWSNWDCRVM-LESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVEMA 288 (414)
Q Consensus 213 Vl~~f~~fl~~~~lv~hn~--~vV~~g~fDir~f-L~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~-~~~~L~~l~~~~ 288 (414)
|+++|.+|+++..+++||+ ++++||.||+ .| |+++|++.|+++|..+.+|+|++..++...+. ..++|.+++++|
T Consensus 107 v~~~f~~~l~~~~lv~hn~~~~~~t~g~fD~-~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p~~~L~~l~~~~ 185 (224)
T 2xri_A 107 VLERVDEWMAKEGLLDPNVKSIFVTCGDWDL-KVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGL 185 (224)
T ss_dssp HHHHHHHHHHHTTTTSTTSCEEEEESSSHHH-HTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCCTTTHHHHHHHT
T ss_pred HHHHHHHHHhhcccccCCCceEEEEeChhhH-HHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCCCCCHHHHHHHc
Confidence 9999999999999999965 8999999996 76 88999999999886566899977666544432 347999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHhcCCccccc
Q 015017 289 GLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITN 324 (414)
Q Consensus 289 gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~~~~i~e 324 (414)
|++.++++|+|++||++||+|+.+|++++..++++.
T Consensus 186 gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~~~it~ 221 (224)
T 2xri_A 186 SLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQTS 221 (224)
T ss_dssp TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred CCCCCCCCcChHHHHHHHHHHHHHHHHcCCEEeecC
Confidence 999877889999999999999999999998888765
No 4
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.2e-36 Score=293.20 Aligned_cols=205 Identities=35% Similarity=0.662 Sum_probs=174.3
Q ss_pred ccEEEEEEeeCCCCCC-CCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHH
Q 015017 136 QYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 214 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~-~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl 214 (414)
..|||||+||||++.. ++..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++||+|++|+
T Consensus 78 ~~~vviD~ETTGl~~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~evl 157 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL 157 (299)
T ss_dssp SEEEEECCEECCCTTCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHHH
T ss_pred ceEEEEEeecccCCCCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHHHH
Confidence 5899999999998532 256799999999999966789999999999999655799999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-CCcEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCC
Q 015017 215 LRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGL 290 (414)
Q Consensus 215 ~~f~~fl~~~~lv-~hn~~vV~~g~fDir~-fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~--~~L~~l~~~~gI 290 (414)
.+|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+++|.+..+|+|++.+++.+++..+ ++|.+++++||+
T Consensus 158 ~~f~~~l~~~~~~~~~~~lVahn~~fD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 236 (299)
T 1zbh_A 158 KKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 236 (299)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHHHHHHTTC
T ss_pred HHHHHHHhhcccCCCCcEEEEEeCHHHH-HHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHHHHHHHcCC
Confidence 9999999986322 12578899999996 7 99999999999988666689999999998876544 899999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhcCCcccccccccc---cCCCCCcccCCC
Q 015017 291 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMWQ---TNDGSLTWNQFP 341 (414)
Q Consensus 291 ~~~g~~HrALdDA~aTA~Ll~~ll~~~~~~~i~e~l~~~---~~~~~~~~~~~~ 341 (414)
+.++++|+|++||++||+|+++|++++..+.+++.+... ..+.+.+|+..|
T Consensus 237 ~~~g~~H~Al~DA~ata~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 290 (299)
T 1zbh_A 237 DYDGRPNCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTP 290 (299)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCSSSCCCCCC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHhCCcCChhhhhhcCccccccccccccCCC
Confidence 998778999999999999999999999888888877621 234555553333
No 5
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=296.22 Aligned_cols=207 Identities=35% Similarity=0.661 Sum_probs=176.1
Q ss_pred ccEEEEEEeeCCCCCC-CCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHH
Q 015017 136 QYFVVIDFEATCDKDK-NPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 214 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~-~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl 214 (414)
..|||||+||||++.. ++..++|||||||+++..+|+++++|++||+|..++.|+++++++||||++||++||+|.+|+
T Consensus 128 ~~~vviD~ETTGl~~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~eVl 207 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVL 207 (349)
T ss_dssp SEEEECCCEECCCTTCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHHHH
T ss_pred CeEEEEEEecCCCCCcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHHHH
Confidence 6899999999998532 356799999999999966789999999999999655799999999999999999999999999
Q ss_pred HHHHHHHhhcCCC-CCcEEEEEcCcchHHH-HHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCC--CCHHHHHHHcCC
Q 015017 215 LRHDKWLENKGIK-NTNFAVVTWSNWDCRV-MLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVR--CNLKEAVEMAGL 290 (414)
Q Consensus 215 ~~f~~fl~~~~lv-~hn~~vV~~g~fDir~-fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~--~~L~~l~~~~gI 290 (414)
.+|.+|+++..+. ...++|+||+.||+ . ||+.+|++.|+.+|.+..+|+|++.+++.+++..+ ++|.+++++||+
T Consensus 208 ~~f~~~l~~~~~~~~~~~lVaHNa~FD~-~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi 286 (349)
T 1zbu_A 208 KKVIDLMKLKELGTKYKYSLLTDGSWDM-SKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGM 286 (349)
T ss_dssp HHHHHHHHHTTBTTTBCEEEEESSSHHH-HTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHHHHHHHTTC
T ss_pred HHHHHHHhcccccCCCcEEEEECcHhhH-HHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHHHHHHHcCC
Confidence 9999999985322 12578899999996 7 99999999999988655689999999998876544 799999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhcCCccccccccc---ccCCCCCcccCCCCC
Q 015017 291 AWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSLMW---QTNDGSLTWNQFPER 343 (414)
Q Consensus 291 ~~~g~~HrALdDA~aTA~Ll~~ll~~~~~~~i~e~l~~---~~~~~~~~~~~~~~~ 343 (414)
+.++++|+|++||++||+||++|++++..+.+++.+.. ...+.+.+|+..|..
T Consensus 287 ~~~g~~HrAl~DA~ata~ll~~ll~~~~~~~i~ell~~~~~~~~~~~~~~~~~~~~ 342 (349)
T 1zbu_A 287 DYDGRPHCGLDDSKNIARIAVRMLQDGCELRINEKMHAGQLMSVSSSLPIEGTPPP 342 (349)
T ss_dssp CCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEETTEEEECCTTSCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHhhccccccCcccccCCCCCC
Confidence 99877899999999999999999999988888887762 223566666444443
No 6
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2e-33 Score=257.60 Aligned_cols=168 Identities=27% Similarity=0.302 Sum_probs=147.6
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
.+||+||+||||+ ++..++|||||+|+++ +|+++++|+++|+|.. .++++++++||||+++|+++|++++|++
T Consensus 12 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~--~g~i~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~v~~ 84 (186)
T 2p1j_A 12 ATFVVLDFETTGL---DPQVDEIIEIGAVKIQ--GGQIVDEYHTLIKPSR--EISRKSSEITGITQEMLENKRSIEEVLP 84 (186)
T ss_dssp -CEEEEEEEESCS---CTTTCCEEEEEEEEEE--TTEEEEEEEEECBCSS--CCCHHHHHHHCCCHHHHTTCCBHHHHHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE--CCEEEEEEEEEECcCC--CCCHHHhhhcCCCHHHHhcCCCHHHHHH
Confidence 6899999999998 5667899999999996 7899999999999996 5999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCC
Q 015017 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGR 295 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~ 295 (414)
+|.+|+++. .+|.|++.||+ .||+.++++.|++.|. .+++|+..+++.+++.++++|++++++||++.. .
T Consensus 85 ~~~~~l~~~------~lv~hn~~fD~-~~L~~~~~~~g~~~~~--~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~-~ 154 (186)
T 2p1j_A 85 EFLGFLEDS------IIVAHNANFDY-RFLRLWIKKVMGLDWE--RPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPF-R 154 (186)
T ss_dssp HHHHHSSSC------EEEETTHHHHH-HHHHHHHHHHHCCCCC--CCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCST-T
T ss_pred HHHHHHCCC------EEEEECcHHHH-HHHHHHHHHcCCCCCC--CCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCC-C
Confidence 999999874 44556679995 8999999999988653 479999999988876667899999999999986 5
Q ss_pred CCcHHHHHHHHHHHHHHHHHhcCCc
Q 015017 296 AHCGLDDAKNTARLLALLMHRGFKF 320 (414)
Q Consensus 296 ~HrALdDA~aTA~Ll~~ll~~~~~~ 320 (414)
+|+|++||++|++|+.+|++++.+.
T Consensus 155 ~H~Al~Da~~t~~l~~~l~~~~~~~ 179 (186)
T 2p1j_A 155 HHRALDDARVTAQVFLRFVEMMKKE 179 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCC---
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999876554
No 7
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=100.00 E-value=3.3e-33 Score=256.78 Aligned_cols=172 Identities=19% Similarity=0.155 Sum_probs=146.7
Q ss_pred ccEEEEEEeeCCCCCCC--CCCCcEEEEcEEEEEcCCCeEe-eEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHH
Q 015017 136 QYFVVIDFEATCDKDKN--PYPQEIIEFPSVIVSSVTGQLE-ACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSE 212 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~--~~~deIIEIgAV~vd~~~g~i~-d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~e 212 (414)
.+|||||+||||+.... ...++|||||+|+++ +|++. ++|+++|+|.. .++++++++||||++||+++|+|++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~--~~~~~~~~f~~lv~P~~--~i~~~~~~i~GIt~~~l~~~~~~~~ 84 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVV--NRRLTGNNFHVYLKPDR--LVDPEAFGVHGIADEFLLDKPTFAE 84 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEE--TTEECSCCEEEECCCSS--CCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEE--CCeEeccEEEEEECcCC--cCCHHHHHhhCcCHHHHhCCCCHHH
Confidence 37999999999983210 045999999999997 67775 57999999995 6999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCC--CceeehHHHHHHhcCCCCCCHHHHHHHcCC
Q 015017 213 ALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYF--NRWINLKVPFHEVFGGVRCNLKEAVEMAGL 290 (414)
Q Consensus 213 Vl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~--~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI 290 (414)
|+++|.+|+++.. .|.||+.||+ .||+.++++.|++.|.+. .+++|+..+++++++..+++|.+++++||+
T Consensus 85 v~~~~~~~l~~~~------lv~hn~~fD~-~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~~~~L~~l~~~~gi 157 (194)
T 2gui_A 85 VADEFMDYIRGAE------LVIHNAAFDI-GFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEI 157 (194)
T ss_dssp HHHHHHHHHTTSE------EEETTHHHHH-HHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTSCCSHHHHHHHTTC
T ss_pred HHHHHHHHHCCCe------EEEEchHHhH-HHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCCCCCHHHHHHHcCc
Confidence 9999999998853 4556679995 899999999999987553 589999999999888667899999999999
Q ss_pred CCCC-CCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 291 AWQG-RAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 291 ~~~g-~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
+..+ .+|+|++||++|++|+.+|+++..
T Consensus 158 ~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 186 (194)
T 2gui_A 158 DNSKRTLHGALLDAQILAEVYLAMTGGQT 186 (194)
T ss_dssp CCTTCSSCCHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCCCCChHHHHHHHHHHHHHHHhccc
Confidence 9876 389999999999999999986543
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.97 E-value=3e-32 Score=260.81 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=143.4
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCC--------C---------eEeeEEEEeecCCCCCCCCcchhhhcC
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLTG 198 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~--------g---------~i~d~F~~lVkP~~~p~Ls~~~~~LTG 198 (414)
.+|||||+||||+ ++..++|||||||+++... | +++++|+++|+|.. .|+++++++||
T Consensus 12 ~~~vv~D~ETTGl---~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~--~i~~~~~~i~G 86 (242)
T 3mxm_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (242)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSS--CCCHHHHHHHC
T ss_pred ceEEEEEeecCCC---CCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCC--CCCHHHHHhcC
Confidence 5899999999998 5678999999999997320 0 67899999999996 69999999999
Q ss_pred CChhhhhCC--CCHH-HHHHHHHHHHhhcCCCCCcEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc
Q 015017 199 IQQIQVDRG--VTLS-EALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF 274 (414)
Q Consensus 199 IT~e~V~~A--p~f~-eVl~~f~~fl~~~~lv~hn~~vV~~g-~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~ 274 (414)
||++||.++ |+|+ +|+++|.+|+++.. .....|+||+ .||+ .||+.++++.|+.++.....++|++.+++.++
T Consensus 87 It~~~l~~~g~p~~~~ev~~~~~~fl~~~~--~~~~lVaHNav~FD~-~fL~~~~~r~g~~~~~~~~~~iDtl~l~r~l~ 163 (242)
T 3mxm_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (242)
T ss_dssp CCHHHHHHTTCCCSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhcCCCchhHHHHHHHHHHHhcCC--CCCEEEEcCChHhhH-HHHHHHHHHcCCCCCccCCeEeehHHHHHHHH
Confidence 999999998 9996 99999999999821 1124456676 9995 89999999999886522337899988877654
Q ss_pred ----C-----CCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 275 ----G-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 275 ----~-----~~~~~L~~l~~~-~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
+ .++++|++++++ ||++.. .+|||++||++|++||+++.++.
T Consensus 164 ~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~ 215 (242)
T 3mxm_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQAL 215 (242)
T ss_dssp HHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHH
T ss_pred hhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHH
Confidence 2 357899999976 999986 68999999999999999877653
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.97 E-value=1.4e-30 Score=245.10 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=145.1
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEc-CCCe--EeeEEEEeecCCCCCCCCcchhhhcCCChh-hhhCCCCHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 211 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~-~~g~--i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e-~V~~Ap~f~ 211 (414)
..|||||+||||+ ++..++|||||+|+++. .+|+ +.++|++||+|.....|+++++++||||++ +|++|+++.
T Consensus 29 ~~~vviD~ETTGl---~~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~ 105 (224)
T 2f96_A 29 YLPVVVDVETGGF---NSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE 105 (224)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred CcEEEEEeeCCCC---CCCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 4789999999998 56679999999999973 2676 478999999995323699999999999997 599999999
Q ss_pred HHHHHHHHHHhhcC---CCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 015017 212 EALLRHDKWLENKG---IKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 287 (414)
Q Consensus 212 eVl~~f~~fl~~~~---lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~-~~~~IDl~~l~r~l~~~~~~~L~~l~~~ 287 (414)
+|+.+|.+|+.... ..+..++|.|++.||+ .||+.++++.|+..+++ ...++|++.+++.+++ .++|.+++++
T Consensus 106 ~v~~~~~~~l~~~~~~~~~~~~~lV~hn~~FD~-~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~--~~~L~~l~~~ 182 (224)
T 2f96_A 106 AALTEIFRGIRKALKANGCKRAILVGHNSSFDL-GFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG--QTVLAKACQA 182 (224)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEETTHHHHH-HHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccCCCEEEEeChhhhH-HHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999997310 0011344555679995 89999999999875333 3579999999998886 3689999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 288 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 288 ~gI~~~g-~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
||++..+ .+|+|++||++|++|+.+|+++..
T Consensus 183 ~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 183 AGMEFDNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp TTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 9999753 689999999999999999988643
No 10
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=99.97 E-value=4.4e-31 Score=261.87 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=142.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCC--------C---------eEeeEEEEeecCCCCCCCCcchhhhcC
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVT--------G---------QLEACFQTYVRPTCNQLLSDFCKDLTG 198 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~--------g---------~i~d~F~~lVkP~~~p~Ls~~~~~LTG 198 (414)
.+|||||+||||+ ++..++|||||+|+++... | +++++|+++|+|.. .|+++++++||
T Consensus 12 ~tfVv~DlETTGL---~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~--~I~~~a~~IhG 86 (314)
T 3u3y_B 12 QTLIFLDLEATGL---PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGK--ACSPGASEITG 86 (314)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSS--CCCHHHHHHHS
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCC--CCCHHHHHhcC
Confidence 5899999999998 5678999999999997321 0 46799999999996 69999999999
Q ss_pred CChhhhhCC--CCH-HHHHHHHHHHHhhcCCCCCcEEEEEc-CcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHh-
Q 015017 199 IQQIQVDRG--VTL-SEALLRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEV- 273 (414)
Q Consensus 199 IT~e~V~~A--p~f-~eVl~~f~~fl~~~~lv~hn~~vV~~-g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l- 273 (414)
||++||+++ |+| ++|+++|.+|+++.. .....|.|| ..||+ .||++++++.|+.+|.....++|+..+++.+
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~--~~~vLVAHNga~FD~-~FL~~el~r~Gl~~~~~~~~~iDTL~l~r~L~ 163 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQP--QPCCLVAHNGDRYDF-PLLQTELARLSTPSPLDGTFCVDSIAALKALE 163 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSC--SSEEEEETTTTTTHH-HHHHHHHHTSSSCCTTTTCEEEEHHHHHHHHH
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCC--CCcEEEEeCcHHHHH-HHHHHHHHHcCCCCCCCCceEEeHHHHHHHHH
Confidence 999999999 999 799999999999821 112445566 59995 8999999999998764445689998766533
Q ss_pred ---cC-----CCCCCHHHHHHH-cCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 274 ---FG-----GVRCNLKEAVEM-AGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 274 ---~~-----~~~~~L~~l~~~-~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
++ .++++|++++++ ||++.+ ++|||++||++|++|++++.++.
T Consensus 164 r~~~P~~~~~~~~~~L~~L~~~l~gi~~~-~aHrAl~DA~ata~lf~~l~~~~ 215 (314)
T 3u3y_B 164 QASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGHVLTLLSICQWKPQAL 215 (314)
T ss_dssp TTC-------CCCCSHHHHHHHHHSSCCS-CSSSHHHHHHHHHHHHHSSHHHH
T ss_pred HHhCccccccCCCCCHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 33 257899999999 999986 78999999999999999877653
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.97 E-value=9.8e-30 Score=240.67 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=142.2
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcC--------------CCeEeeEEEEeecCCCCCCCCcchhhhcCCCh
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSV--------------TGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQ 201 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~--------------~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~ 201 (414)
.+|||||+||||+ ++..++|||||+|+++.. .++++++|+++|+|.. .|+++++++||||+
T Consensus 10 ~~~v~iD~ETTGl---~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~--~i~~~~~~i~GIt~ 84 (238)
T 1y97_A 10 ETFVFLDLEATGL---PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPER--PFTAKASEITGLSS 84 (238)
T ss_dssp SEEEEEEEEESSC---GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSS--CCCHHHHHHHCCCH
T ss_pred CeEEEEEeeCCCc---CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCC--cCCHHHHHHhCCCH
Confidence 5899999999998 566799999999999832 1378899999999996 59999999999999
Q ss_pred hhh--hCCCCH-HHHHHHHHHHHhhcCCCCCcEEEEEcC-cchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhc---
Q 015017 202 IQV--DRGVTL-SEALLRHDKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVF--- 274 (414)
Q Consensus 202 e~V--~~Ap~f-~eVl~~f~~fl~~~~lv~hn~~vV~~g-~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~--- 274 (414)
+|| .++|+| ++|+++|.+|+++.. +..+.|.|++ .||+ .||++++.+.|+.+|. ...++|+..+++.++
T Consensus 85 ~~l~~~~~p~f~~~v~~~l~~fl~~~~--~~~~lVahN~~~FD~-~fL~~~~~~~g~~~~~-~~~~iDt~~l~~~~~~~~ 160 (238)
T 1y97_A 85 EGLARCRKAGFDGAVVRTLQAFLSRQA--GPICLVAHNGFDYDF-PLLCAELRRLGARLPR-DTVCLDTLPALRGLDRAH 160 (238)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSC--SSEEEEETTTTTTHH-HHHHHHHHHHTCCCCT-TCEEEEHHHHHHHHHHHC
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhCC--CCCEEEecCchhhhH-HHHHHHHHHcCCCCCC-CCEEEEHHHHHHHHHhcc
Confidence 999 588999 599999999998631 1134455678 9995 8999999999988762 347899999998886
Q ss_pred ------C-CCCCCHHHHHH-HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcCC
Q 015017 275 ------G-GVRCNLKEAVE-MAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 319 (414)
Q Consensus 275 ------~-~~~~~L~~l~~-~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~~ 319 (414)
+ .++++|+++++ +||++.. .+|+|++||++|++|+.+++++...
T Consensus 161 ~p~~~~p~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~~ta~l~~~l~~~~~~ 212 (238)
T 1y97_A 161 SHGTRARGRQGYSLGSLFHRYFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLA 212 (238)
T ss_dssp ----------CCSHHHHHHHHHSSCCC----CHHHHHHHHHHHHHHTHHHHHH
T ss_pred CccccCCCCCCCCHHHHHHHHhCCCCc-cCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35789999999 5999985 6899999999999999999876543
No 12
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.96 E-value=3e-29 Score=237.43 Aligned_cols=178 Identities=21% Similarity=0.218 Sum_probs=147.3
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEc-CCCe--EeeEEEEeecCCCCCCCCcchhhhcCCChh-hhhCCCCHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSS-VTGQ--LEACFQTYVRPTCNQLLSDFCKDLTGIQQI-QVDRGVTLS 211 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~-~~g~--i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e-~V~~Ap~f~ 211 (414)
..||+||+||||+ ++..++|||||+|+++. .+|+ +.++|+++|+|.....++++++++||||++ +|+++|++.
T Consensus 37 ~~~vviD~ETTGl---~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~ 113 (235)
T 3v9w_A 37 FYPVVIDVETAGF---NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY 113 (235)
T ss_dssp EEEEEEEEEESSS---CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred CcEEEEEEeCCCC---CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence 5899999999998 56789999999999862 2666 479999999995334699999999999999 999999999
Q ss_pred HHHHHHHHHHhhcCCC---CCcEEEEEcCcchHHHHHHHHHHHcCCCCCCC-CCceeehHHHHHHhcCCCCCCHHHHHHH
Q 015017 212 EALLRHDKWLENKGIK---NTNFAVVTWSNWDCRVMLESECRFKKIWKPPY-FNRWINLKVPFHEVFGGVRCNLKEAVEM 287 (414)
Q Consensus 212 eVl~~f~~fl~~~~lv---~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~-~~~~IDl~~l~r~l~~~~~~~L~~l~~~ 287 (414)
+|+++|.+|+++..-. +....|.|++.||+ .||+.++++.|+..+++ ...++|++.+++.+++ .++|++++++
T Consensus 114 ~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~-~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p--~~~L~~l~~~ 190 (235)
T 3v9w_A 114 EALHEIFKVVRKGIKASGCNRAIMVAHNANFDH-SFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQT 190 (235)
T ss_dssp HHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHH-HHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHS--CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEeChHHHH-HHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhC--CCCHHHHHHH
Confidence 9999999999631100 11334555679996 89999999999976333 2478999999998887 3699999999
Q ss_pred cCCCCCC-CCCcHHHHHHHHHHHHHHHHHhcCC
Q 015017 288 AGLAWQG-RAHCGLDDAKNTARLLALLMHRGFK 319 (414)
Q Consensus 288 ~gI~~~g-~~HrALdDA~aTA~Ll~~ll~~~~~ 319 (414)
||++..+ .+|+|++||++|++|+.+|+++..+
T Consensus 191 ~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~ 223 (235)
T 3v9w_A 191 AGMDFDSTQAHSALYDTERTAVLFCEIVNRWKR 223 (235)
T ss_dssp HTCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence 9999864 6899999999999999999987544
No 13
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.95 E-value=7.2e-28 Score=218.70 Aligned_cols=165 Identities=16% Similarity=0.113 Sum_probs=124.5
Q ss_pred cccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEee-EEEEeecCCCC--CCCCcch---hhhcCCChhhhhCCC
Q 015017 135 FQYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEA-CFQTYVRPTCN--QLLSDFC---KDLTGIQQIQVDRGV 208 (414)
Q Consensus 135 ~~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d-~F~~lVkP~~~--p~Ls~~~---~~LTGIT~e~V~~Ap 208 (414)
..+||+||+||||+ ++..++|||||+|++| .++++++ +|+++|+|... +.+++++ .++||||++||+++|
T Consensus 4 ~~~~v~iD~ETTGl---~~~~~~IieIg~v~~~-~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~ 79 (180)
T 2igi_A 4 ENNLIWIDLEMTGL---DPERDRIIEIATLVTD-ANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTM 79 (180)
T ss_dssp GGCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCC
T ss_pred CCcEEEEEeeCCCC---CCCCCceEEEEEEEEc-CCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCC
Confidence 46899999999998 5677999999999997 3565654 59999999851 1245566 455999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hH-HHHHHhcCCCCCCHHHHH
Q 015017 209 TLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LK-VPFHEVFGGVRCNLKEAV 285 (414)
Q Consensus 209 ~f~eVl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~ID--l~-~l~r~l~~~~~~~L~~l~ 285 (414)
++++|+++|.+|+++..-.+....|.|+..||+ .||+.++.+.+.. +..+++| +. .+.+++++. +.
T Consensus 80 ~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~-~fL~~~~~~~~~~---~~~~~~d~~tl~~l~~~~~p~----~~--- 148 (180)
T 2igi_A 80 GDREAELATLEFLKQWVPAGKSPICGNSIGQDR-RFLFKYMPELEAY---FHYRYLDVSTLKELARRWKPE----IL--- 148 (180)
T ss_dssp CHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEETHHHHHHHHHHCGG----GG---
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCHHHHH-HHHHHHHHHhccC---CCcceeeHHHHHHHHHHhChH----hh---
Confidence 999999999999997211111223334459995 8999999887633 2357899 55 366766652 11
Q ss_pred HHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 286 EMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 286 ~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
.|++.. .+|||++||++|++|+.++++..
T Consensus 149 --~~i~~~-~~H~Al~Da~ata~l~~~~~~~~ 177 (180)
T 2igi_A 149 --DGFTKQ-GTHQAMDDIRESVAELAYYREHF 177 (180)
T ss_dssp --GGSCCC-CCCCHHHHHHHHHHHHHHHHHHT
T ss_pred --hCCCCc-CCcCcHHHHHHHHHHHHHHHHHh
Confidence 377654 68999999999999999998764
No 14
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=99.94 E-value=7.1e-28 Score=221.44 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=124.2
Q ss_pred ccEEEEEEeeCCCCCCCCCC-CcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYP-QEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEAL 214 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~-deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl 214 (414)
.+|||||+||||+ ++.. ++|||||+|.. +|+++ |++||+|.. +++++++++||||++||++||+|++|+
T Consensus 5 ~~~vviD~ETTGl---~~~~~~~iiei~~v~~---~g~~i--~~~lV~P~~--~i~~~~~~i~GIt~~~l~~a~~~~~v~ 74 (189)
T 1wlj_A 5 REVVAMDCEMVGL---GPHRESGLARCSLVNV---HGAVL--YDKFIRPEG--EITDYRTRVSGVTPQHMVGATPFAVAR 74 (189)
T ss_dssp -CEEEEEEEEEEE---TTTTEEEEEEEEEECT---TCCEE--EEEEEECSS--CEEECCHHHHCCCHHHHTTCEEHHHHH
T ss_pred CeEEEEEeECcCc---CCCCCceEEEEEEEeC---CCCEE--EeeEecCCC--CCCccccCCCCCCHHHHcCCCCHHHHH
Confidence 5899999999998 4444 57899998743 67766 999999995 599999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHH--HH--hcC-CCCCCHHHHHHH-c
Q 015017 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPF--HE--VFG-GVRCNLKEAVEM-A 288 (414)
Q Consensus 215 ~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~--r~--l~~-~~~~~L~~l~~~-~ 288 (414)
++|.+|+++.. .|.|++.||+ .||+.+ +|. ..++|+..++ ++ .++ ..+++|++++++ |
T Consensus 75 ~~~~~~l~~~~------lV~hn~~fD~-~~L~~~-------~~~--~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~l 138 (189)
T 1wlj_A 75 LEILQLLKGKL------VVGHDLKHDF-QALKED-------MSG--YTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLL 138 (189)
T ss_dssp HHHHHHHTTSE------EEESSHHHHH-HHTTCC-------CTT--CEEEEGGGCHHHHHHHTC-----CCHHHHHHHHT
T ss_pred HHHHHHHCCCE------EEECCcHHHH-HHHHHh-------CCC--CceechHhhhhhhhcccCCCCCCccHHHHHHHHc
Confidence 99999998754 3444558995 788643 342 3689987653 23 333 357899999998 8
Q ss_pred CCCCCCC--CCcHHHHHHHHHHHHHHHHHhc
Q 015017 289 GLAWQGR--AHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 289 gI~~~g~--~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
|++.++. +|+|++||++|++|+.++++..
T Consensus 139 gi~~~~~~~~H~Al~Da~ata~l~~~l~~~~ 169 (189)
T 1wlj_A 139 HKSIQNSLLGHSSVEDARATMELYQISQRIR 169 (189)
T ss_dssp CCCCSCCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 9998643 8999999999999999998764
No 15
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=99.94 E-value=1.6e-26 Score=241.12 Aligned_cols=168 Identities=14% Similarity=0.085 Sum_probs=135.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeE-EEEeecCCCCCCC--CcchhhhcCCChhhhhCCCCH-H
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVRPTCNQLL--SDFCKDLTGIQQIQVDRGVTL-S 211 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~-F~~lVkP~~~p~L--s~~~~~LTGIT~e~V~~Ap~f-~ 211 (414)
.+|||||+||||+ ++..++|||||+|+++ .+|+++++ |++||+|.. + + ++.++.+||||++||.+++.+ .
T Consensus 9 ~~~vv~DlETTGl---~p~~d~IIEIgaV~vd-~~g~ii~~~f~~lVkP~~-~-ilp~p~a~~IhGIT~e~l~~ap~~~~ 82 (482)
T 2qxf_A 9 STFLFHDYETFGT---HPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPAD-D-YLPQPGAVLITGITPQEARAKGENEA 82 (482)
T ss_dssp CEEEEEEEEESSS---CTTTSCEEEEEEEEEC-TTSCBCSCCEEEEBCCCT-T-CCCCHHHHHHHCCCHHHHHHHCBCHH
T ss_pred CCEEEEEEECCCC---CCCCCeEEEEEEEEEE-CCCeEEeeeeEEEECCCC-C-CCCCHHHHHHhCCCHHHHhcCCCCHH
Confidence 5899999999998 5677999999999997 47777777 999999995 3 4 788999999999999976655 9
Q ss_pred HHHHHHHHHHh--hcCCCCCcEEEEEc-CcchHHHHHHHHHHHcCCCCCCC----CCceeehHHHHHHhc----------
Q 015017 212 EALLRHDKWLE--NKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPPY----FNRWINLKVPFHEVF---------- 274 (414)
Q Consensus 212 eVl~~f~~fl~--~~~lv~hn~~vV~~-g~fDir~fL~~~~~~~gi~~P~~----~~~~IDl~~l~r~l~---------- 274 (414)
+|+.+|.+|++ +. ++|.|+ ..||+ .||+.++.+.|+..... .+.++|+..+++.++
T Consensus 83 evl~~f~~~l~~~~~------~lVaHNs~~FD~-~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP 155 (482)
T 2qxf_A 83 AFAARIHSLFTVPKT------CILGYNNVRFDD-EVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 155 (482)
T ss_dssp HHHHHHHHHHTSTTE------EEEESSTTTTHH-HHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCC
T ss_pred HHHHHHHHHHcCCCC------EEEEECCHHHHH-HHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCc
Confidence 99999999998 43 334444 49995 89999999998763210 156789988887665
Q ss_pred ----CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 275 ----GGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 275 ----~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
+..+++|+++++++|++.. .+|+|++||++|++|+.+|.+..
T Consensus 156 ~~~~~~~s~kL~~L~~~~Gi~~~-~aHrAL~DA~aTa~l~~~l~~~~ 201 (482)
T 2qxf_A 156 ENDDGLPSFRLEHLTKANGIEHS-NAHDAMADVYATIAMAKLVKTRQ 201 (482)
T ss_dssp BCTTSSBCCCHHHHHHHTTCCCC----CTTHHHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHcCCCCC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 2346799999999999985 68999999999999999987653
No 16
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.94 E-value=9.7e-27 Score=214.87 Aligned_cols=164 Identities=15% Similarity=0.120 Sum_probs=123.1
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCC-eEeeEEEEeecCCCCC---CCCcchhhh---cCCChhhhhCCC
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTG-QLEACFQTYVRPTCNQ---LLSDFCKDL---TGIQQIQVDRGV 208 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g-~i~d~F~~lVkP~~~p---~Ls~~~~~L---TGIT~e~V~~Ap 208 (414)
..||+||+||||+ ++..++|||||||+.|. ++ .+.++|+++|+|.. + .+++++.++ ||||++||++||
T Consensus 9 ~~~vviD~ETTGl---~p~~d~IieIgav~~~~-~~~~~~~~~~~~v~p~~-~i~~~~~~~~~~~~~itGIt~~~l~~~p 83 (194)
T 2gbz_A 9 DRLIWIDLEMTGL---DTDRDSIIEIATIVTDA-QLNVLAEGPELAIAHSL-ETLEAMDEWNRNQHRRSGLWQRVLDSQV 83 (194)
T ss_dssp CEEEEEEEEESCS---CTTTCCEEEEEEEEEET-TCCEEEECCCEECCCCH-HHHHTSCSHHHHHHHHHTHHHHHHHCCC
T ss_pred CCEEEEEeECCCC---CCCCCccEEEEEEEEcC-CcceeccCceEEEeCCH-HHhhccchHHHHHHHhhCCCHHHHhcCC
Confidence 5899999999998 67789999999999763 33 35578999999985 2 125556555 999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHH---HHHHhcCCCCCCHHHHH
Q 015017 209 TLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKV---PFHEVFGGVRCNLKEAV 285 (414)
Q Consensus 209 ~f~eVl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~---l~r~l~~~~~~~L~~l~ 285 (414)
++++|+++|.+|+++..-.+....|.|++.||+ .||+.++.+.+.. +.++++|+.. +.+++++. ++
T Consensus 84 ~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~-~fL~~~~~~~~~~---~~~~~~d~~~l~~l~~~~~p~-------~~ 152 (194)
T 2gbz_A 84 THAQAEAQTVAFLGEWIRAGASPMCGNSICQDR-RFLHRQMSRLERY---FHYRNLDVSTIKELARRWAPA-------VA 152 (194)
T ss_dssp CHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHH-HHHHHHCHHHHHH---SCSCEEEHHHHHHHHHHHCGG-------GG
T ss_pred CHHHHHHHHHHHHHHhCCCCCceEEecCHHHhH-HHHHHHHHHhccc---CCCccccHHHHHHHHHHhCHH-------HH
Confidence 999999999999998751111123445569994 8999999887633 3356789764 34444331 12
Q ss_pred HHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 286 EMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 286 ~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
+ +++.. .+|||++||++|++||.++.+...
T Consensus 153 ~--~i~~~-~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 153 S--GFAKS-SAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp T--TCCCC-SCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred h--CCCCC-CCcccHHHHHHHHHHHHHHHHHhc
Confidence 2 36654 689999999999999999987643
No 17
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.93 E-value=2.2e-26 Score=212.55 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=121.9
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeE-EEEeec-CCCC-CCCCcc---hhhhcCCChhhhhCCCC
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEAC-FQTYVR-PTCN-QLLSDF---CKDLTGIQQIQVDRGVT 209 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~-F~~lVk-P~~~-p~Ls~~---~~~LTGIT~e~V~~Ap~ 209 (414)
.+||+||+||||+ ++..++|||||||+.| .++++++. ++.+|+ |... ..+++. +..+||||++|+++||+
T Consensus 9 ~~~v~~D~ETTGL---~p~~d~IiEIgaV~~d-~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~ 84 (186)
T 3tr8_A 9 DNLIWLDLEMTGL---DPERDRIIEIATIVTN-SHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD 84 (186)
T ss_dssp TCEEEEEEEESSS---CTTTCCEEEEEEEEEC-TTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred CcEEEEEEECCCC---CCCCCceEEEEEEEEc-CCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence 5899999999998 6788999999999765 34466655 466696 5410 013444 55677999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceee--hHH-HHHHhcCCCCCCHHHHHH
Q 015017 210 LSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWIN--LKV-PFHEVFGGVRCNLKEAVE 286 (414)
Q Consensus 210 f~eVl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~ID--l~~-l~r~l~~~~~~~L~~l~~ 286 (414)
+++|+++|++|+.+..-.+....+.|+..|| +.||++++.+.|..+ .++++| +.. +.|+++|. +.
T Consensus 85 ~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD-~~FL~~~~~~~~~~~---~~~~iDvsTl~elar~~~P~----~~---- 152 (186)
T 3tr8_A 85 EVEAETLTLAFLEKYVSAGKSPLCGNSVCQD-RRFLSRYMPRLNQFF---HYRHLDVTTLKILAQRWAPQ----IA---- 152 (186)
T ss_dssp HHHHHHHHHHHHTTTSCTTCSCEEESSTHHH-HHHHHHHCHHHHHHS---CSCEEEHHHHHHHHHHHCHH----HH----
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEcHHHh-HHHHHHHHHHcCCCC---CCcEEeHHHHHHHHHHHCcc----cc----
Confidence 9999999999994221111122333445999 599999998877543 467899 665 88888862 22
Q ss_pred HcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 287 MAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 287 ~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
-|++.. .+|||++||++|.++|....+...
T Consensus 153 -~~~~~~-~~HrAl~Da~ati~~l~~y~~~~~ 182 (186)
T 3tr8_A 153 -AAHIKE-SQHLALQDIRDSIEELRYYRAHLL 182 (186)
T ss_dssp -TTSCCC-CCSCHHHHHHHHHHHHHHHHHHTB
T ss_pred -ccCCCC-CCcChHHHHHHHHHHHHHHHHHhh
Confidence 177765 689999999999999998877644
No 18
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=98.81 E-value=3.3e-08 Score=91.30 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=96.4
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhh--hcCCChhhhhCCCCHHHHH
Q 015017 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD--LTGIQQIQVDRGVTLSEAL 214 (414)
Q Consensus 137 ~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~--LTGIT~e~V~~Ap~f~eVl 214 (414)
.-+++|+|+|+. ....++||||+|. ++|+ .|+..+..-.....+++..+ +.++.+.......+++++.
T Consensus 23 ~r~FlDTEFt~d----~~~~eLISIGlV~---EdGr---EFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~ 92 (190)
T 4hec_A 23 VRYFYDTEFIED----GHTIELISIGVVA---EDGR---EYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIR 92 (190)
T ss_dssp EEEEEEEEEEEC----SSCEEEEEEEEEE---TTSC---EEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHH
T ss_pred eEEEEeeeecCC----CCCCCEEEEEEEc---CCCC---EEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHH
Confidence 458999999973 3567899999984 5675 48877653211246777665 6777766666678999999
Q ss_pred HHHHHHHhhcCCCCCcEEEEEc-CcchHHHHHHHHHHHcCCCCCC-CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCC
Q 015017 215 LRHDKWLENKGIKNTNFAVVTW-SNWDCRVMLESECRFKKIWKPP-YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAW 292 (414)
Q Consensus 215 ~~f~~fl~~~~lv~hn~~vV~~-g~fDir~fL~~~~~~~gi~~P~-~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~ 292 (414)
.+|.+||.... .....|+.| +.+| ..+|...+...+ .+|. +.....|++.++... + ...++.
T Consensus 93 ~~L~~FL~~~~--~~~~eLwa~~~~yD-~~~L~ql~g~m~-~lP~~~p~~~~dlr~~~~~~-g-----------~~~lp~ 156 (190)
T 4hec_A 93 LDLEEFLRIDG--TDSIELWAWVGAYD-HVALCQLWGPMT-ALPPTVPRFTRELRQLWEDR-G-----------CPRMPP 156 (190)
T ss_dssp HHHHHHTTTTS--SCEEEEEESSCHHH-HHHHHTTTSSGG-GSCTTSCSSCEEHHHHHHHT-T-----------CCCCCC
T ss_pred HHHHHHHHhcC--CCCCEEEEeccccc-HHHHHHHhcccc-cCCcccchhhHHHHHHHHHc-C-----------CCCCCC
Confidence 99999997542 123445665 7899 477765432211 1221 222235666555321 1 122222
Q ss_pred -CCCCCcHHHHHHHHHHHHHHHHHh
Q 015017 293 -QGRAHCGLDDAKNTARLLALLMHR 316 (414)
Q Consensus 293 -~g~~HrALdDA~aTA~Ll~~ll~~ 316 (414)
.+..|+||.||+..+..++.+...
T Consensus 157 ~~~~~H~AL~DAR~n~~~~~~~~~~ 181 (190)
T 4hec_A 157 RPRDVHDALVDARDQLRRFRLITST 181 (190)
T ss_dssp -----CCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcCcHHHHHHHHHHHHHHhCc
Confidence 345699999999999999888643
No 19
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=98.65 E-value=2.9e-07 Score=98.40 Aligned_cols=147 Identities=15% Similarity=0.090 Sum_probs=104.6
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
..+|+||+||||+ ++..++|++|+++. . +|+. .||.+. +.. + | +.++++++++++
T Consensus 26 ~~~va~DtEttgl---~~~~~~iv~I~~~~-~--~g~~-----~yip~~-~~~-------~-~-----~~~~l~~~~vl~ 80 (605)
T 2kfn_A 26 APVFAFDTETDSL---DNISANLVGLSFAI-E--PGVA-----AYIPVA-HDY-------L-D-----APDQISRERALE 80 (605)
T ss_dssp SSSEEEEEEESCS---CTTTCCEEEEEEEE-E--TTEE-----EEEECC-CCS-------T-T-----CCCCCCHHHHHH
T ss_pred CCeEEEEEecCCC---CcccCceEEEEEEE-c--CCcE-----EEEecc-ccc-------c-c-----cccccCHHHHHH
Confidence 3679999999997 56678999999884 2 4543 356222 110 1 2 235677999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 015017 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 293 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~~ 293 (414)
.|.+|+++..+ ..|+|++.||+ .+|.. .|+.++ ..++||....+.+.+ ..+++|++++++| |+...
T Consensus 81 ~L~~~L~d~~i----~kV~hnak~D~-~~L~~----~Gi~l~---~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i 148 (605)
T 2kfn_A 81 LLKPLLEDEKA----LKVGQNLKYDR-GILAN----YGIELR---GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 148 (605)
T ss_dssp HHHHHHTCTTS----CEEESSHHHHH-HHHHT----TTCCCC---CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHcCCCC----eEEEECcHHHH-HHHHH----CCCCCC---CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcc
Confidence 99999998522 24566779996 78763 687754 358999877766666 3478999999988 76531
Q ss_pred --------CC-------------CCcHHHHHHHHHHHHHHHHHhcCC
Q 015017 294 --------GR-------------AHCGLDDAKNTARLLALLMHRGFK 319 (414)
Q Consensus 294 --------g~-------------~HrALdDA~aTA~Ll~~ll~~~~~ 319 (414)
|. .|.|..||.+|++|+..|..+..+
T Consensus 149 ~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 149 TFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 156999999999999988776544
No 20
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=98.55 E-value=1.9e-06 Score=84.24 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=119.5
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCe-----EeeEEEEeecCCCCCCCCcc
Q 015017 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQ-----LEACFQTYVRPTCNQLLSDF 192 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~------------------~~deIIEIgAV~vd~~~g~-----i~d~F~~lVkP~~~p~Ls~~ 192 (414)
.+||++|+|.||+-.... +.-.|||||...++ .+|+ ..-.|+....|.. ...++.
T Consensus 34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~-~~g~~p~~~~~wqFNF~f~~~~-d~~~~~ 111 (285)
T 4gmj_B 34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 111 (285)
T ss_dssp CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeec-cCCCcCCCeeEEEEEEEecccc-ccccHH
Confidence 489999999999742110 12259999999998 4443 3456777777775 346677
Q ss_pred hhhh---cCCChhhhh-CCCCHHHHHHHHHHHHhhcCCC-CCcEEEEE-cCcchHHHHHHHHHHHcCCCCCC--------
Q 015017 193 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP-------- 258 (414)
Q Consensus 193 ~~~L---TGIT~e~V~-~Ap~f~eVl~~f~~fl~~~~lv-~hn~~vV~-~g~fDir~fL~~~~~~~gi~~P~-------- 258 (414)
++++ +||.=.... .+.+.. +|.+.+..++++ ..+..+|+ ++.+|+ .||-+.+.... +|.
T Consensus 112 SI~fL~~~G~DF~k~~~~GI~~~----~f~ell~~sglvl~~~v~WvtfH~~yDf-~yL~k~lt~~~--LP~~~~eF~~~ 184 (285)
T 4gmj_B 112 SIELLTTSGIQFKKHEEEGIETQ----YFAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTNSN--LPEEELDFFEI 184 (285)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTSSSSSCTTCEEEESSCHHHH-HHHHHHHHTSC--CCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHcCCCHH----HHHHHHHHhHHHhcCCCceEEecchhhH-HHHHHHHhCCC--CCCCHHHHHHH
Confidence 7766 788766654 566664 455566555443 34455554 688997 78877765433 342
Q ss_pred ---CCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 259 ---YFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 259 ---~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
+|-.++|++-+.+..-+ .+.+|+++++.+|++..|..|.|-.|++.|+.+|.+|.+...
T Consensus 185 l~~~FP~vYD~K~l~~~~~~-l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 185 LRLFFPVIYDVKYLMKSCKN-LKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp HHHHCSCEEEHHHHGGGSTT-CCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCchhhhHHHHHHhccc-cCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 12246787766654332 235899999999999888999999999999999999987543
No 21
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=98.29 E-value=2.1e-06 Score=93.22 Aligned_cols=141 Identities=17% Similarity=0.161 Sum_probs=91.6
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHHHH
Q 015017 138 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 217 (414)
Q Consensus 138 ~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~~f 217 (414)
+||||+||||+ ++..++|..|.+ .+..++++ | .+.|. .++++++.|
T Consensus 1 ~vv~D~ETtGl---~~~~d~i~~iqi--~~~~~~~~---~--~~~p~------------------------~i~~~l~~L 46 (698)
T 1x9m_A 1 MIVSDIEANAL---LESVTKFHCGVI--YDYSTAEY---V--SYRPS------------------------DFGAYLDAL 46 (698)
T ss_dssp CEEEEEEESSC---GGGCCCEEEEEE--EETTTTEE---E--EECGG------------------------GHHHHHHHH
T ss_pred CEEEEcCCCCc---CCCCCEEEEEEE--EecCCCcE---E--EEChH------------------------HHHHHHHHH
Confidence 58999999998 566778766633 34333432 1 22222 224567778
Q ss_pred HHHHhhcCCCCCcEEEEEcC-cchHHHHHHHHHHH---cCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc----
Q 015017 218 DKWLENKGIKNTNFAVVTWS-NWDCRVMLESECRF---KKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA---- 288 (414)
Q Consensus 218 ~~fl~~~~lv~hn~~vV~~g-~fDir~fL~~~~~~---~gi~~P~~~~~~IDl~~l~r~l~~-~~~~~L~~l~~~~---- 288 (414)
.+|+. .. ...|.|++ .||+ .+|...+++ .|+.+++ ..++||..+.+.+.+ ..+++|++++++|
T Consensus 47 ~~~l~-~~----~~kV~HNa~kfD~-~~L~~~~~~~~~~Gi~l~~--~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~s 118 (698)
T 1x9m_A 47 EAEVA-RG----GLIVFHNGHKYDV-PALTKLAKLQLNREFHLPR--ENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGA 118 (698)
T ss_dssp HHHHH-TT----CCEEESSTTTTHH-HHHHHHHHHHHCCCCCCCG--GGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSC
T ss_pred HHHHh-cC----CeEEEcCChHHHH-HHHHHhhhhcccCCccCCC--CcchhHHHHHHHhCCCCCCCCHHHHHHHHcccc
Confidence 88886 21 13567888 9995 889877643 3776531 468999887776665 3467777776665
Q ss_pred ----CC-------CC----------CC---C------------CCcHHHHHHHHHHHHHHHHHhcCCc
Q 015017 289 ----GL-------AW----------QG---R------------AHCGLDDAKNTARLLALLMHRGFKF 320 (414)
Q Consensus 289 ----gI-------~~----------~g---~------------~HrALdDA~aTA~Ll~~ll~~~~~~ 320 (414)
|. ++ .| . .|.|..||.+|.+|+..|..+..+.
T Consensus 119 L~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~~ 186 (698)
T 1x9m_A 119 LEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHYF 186 (698)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTTS
T ss_pred hhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 31 10 01 0 4779999999999999998865544
No 22
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=98.26 E-value=3.5e-05 Score=73.98 Aligned_cols=174 Identities=17% Similarity=0.122 Sum_probs=119.2
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE-----eeEEEEeecCCCCCCCCcc
Q 015017 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 192 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~------------------~~deIIEIgAV~vd~~~g~i-----~d~F~~lVkP~~~p~Ls~~ 192 (414)
..||++|+|.+|+..... +.-.|||||...+| .+|+. .-.|+-...... ...++.
T Consensus 24 ~~fvAmDtEFpGvv~rp~g~f~~~~~~~Y~~lr~nVd~l~iIQlGlt~~~-~~g~~p~~~~~wqFNF~F~~~~-d~~~~~ 101 (252)
T 2d5r_A 24 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMN-EQGEYPPGTSTWQFNFKFNLTE-DMYAQD 101 (252)
T ss_dssp CCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEEC-TTSCCCSSCCEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEEeeecceecccCCCCCCCHHHHHHHHHHhhhhcceeEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999853210 23579999999998 45553 455665544442 235555
Q ss_pred hhhh---cCCChhhhh-CCCCHHHHHHHHHHHHhhcCCC-CCcEEEEE-cCcchHHHHHHHHHHHcCCCCCCC-------
Q 015017 193 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPPY------- 259 (414)
Q Consensus 193 ~~~L---TGIT~e~V~-~Ap~f~eVl~~f~~fl~~~~lv-~hn~~vV~-~g~fDir~fL~~~~~~~gi~~P~~------- 259 (414)
+.++ +||.=+... ++.+.. +|.+.+-.++++ ..++.+++ +|.+|+ .+|-+-+.. -++|.-
T Consensus 102 Si~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sglvl~~~v~Witfhg~yDf-~yL~k~L~~--~~LP~~~~~F~~~ 174 (252)
T 2d5r_A 102 SIELLTTSGIQFKKHEEEGIETQ----YFAELLMTSGVVLCEGVKWLSFHSGYDF-GYLIKILTN--SNLPEEELDFFEI 174 (252)
T ss_dssp HHHHHHHHTCCHHHHHHHCBCHH----HHHHHHHTTTSSSSSSCEEEESSCHHHH-HHHHHHHHT--SCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHhcCCCHH----HHHHHHHhcCcccCCCceEEEecCcchH-HHHHHHhcC--CCCCCCHHHHHHH
Confidence 5554 677766654 577766 466666666554 34666666 588997 777766553 345531
Q ss_pred ----CCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhcCC
Q 015017 260 ----FNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFK 319 (414)
Q Consensus 260 ----~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~~~ 319 (414)
|...+|++-+.+...+. ..+|.++++.+|++..|..|.|-.|+..|+.+|.+|.+....
T Consensus 175 l~~~FP~iyD~K~l~~~~~~l-~~gL~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~~f~ 237 (252)
T 2d5r_A 175 LRLFFPVIYDVKYLMKSCKNL-KGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFE 237 (252)
T ss_dssp HHHHCSCEEEHHHHGGGCTTC-CSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCcchhhHHHHHHHhccc-CCCHHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHHhcC
Confidence 22456777665543332 357999999999998899999999999999999999876543
No 23
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=98.25 E-value=2.2e-05 Score=76.81 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=117.2
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE------eeEEEEeecCCCCCCCCc
Q 015017 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL------EACFQTYVRPTCNQLLSD 191 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~------------------~~deIIEIgAV~vd~~~g~i------~d~F~~lVkP~~~p~Ls~ 191 (414)
..||++|+|.+|...... +.-.|||||...+| .+|+. .-.|+-...... ...++
T Consensus 38 ~~fVAmDtEFpGvv~rp~g~f~~~~d~~Yq~lr~nVd~l~iIQlGLt~~~-~~g~~p~~~~~~wqFNF~F~~~~-d~~~~ 115 (289)
T 1uoc_A 38 YNHVSISTEFVGTLARPIGTFRSKVDYHYQTMRANVDFLNPIQLGLSLSD-ANGNKPDNGPSTWQFNFEFDPKK-EIMST 115 (289)
T ss_dssp SCEEEEEEEEEC----------CHHHHHHHHHHHHHTTCEEEEEEEEEEC-TTCCCCSSSCSEEEEEBCCCTTC-CCCCH
T ss_pred CCEEEEEeeecceeccCCcccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCcCCCCcceEEEEEEECCcc-ccccH
Confidence 489999999999842110 23579999999998 45543 445665544432 23455
Q ss_pred chhhh---cCCChhhhh-CCCCHHHHHHHHHHHHhhcCCC-CCcEEEEE-cCcchHHHHHHHHHHHcCCCCCC-------
Q 015017 192 FCKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPP------- 258 (414)
Q Consensus 192 ~~~~L---TGIT~e~V~-~Ap~f~eVl~~f~~fl~~~~lv-~hn~~vV~-~g~fDir~fL~~~~~~~gi~~P~------- 258 (414)
.++++ +||.=+... ++.+.. +|.+.+-.++|+ ..++.+++ +|.+|+ .||-+-+.. -++|.
T Consensus 116 ~SI~fL~~~G~DF~k~~~~GI~~~----~F~ell~~sgLvl~~~v~Witfhg~yDf-gyL~k~Lt~--~~LP~~~~~F~~ 188 (289)
T 1uoc_A 116 ESLELLRKSGINFEKHENLGIDVF----EFSQLLMDSGLMMDDSVTWITYHAAYDL-GFLINILMN--DSMPNNKEDFEW 188 (289)
T ss_dssp HHHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTSSCSSCTTSEEEESSTTHHH-HHHHHHHTT--SCCCSSHHHHHH
T ss_pred HHHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCCccCCCceEEEccCcchH-HHHHHHhcc--ccCCcCHHHHHH
Confidence 55544 677766554 577665 566667666665 34566666 588997 777766543 34443
Q ss_pred ----CCCceeehHHHHHHhcCCC--------------CCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 259 ----YFNRWINLKVPFHEVFGGV--------------RCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 259 ----~~~~~IDl~~l~r~l~~~~--------------~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
+|..++|++-+.+...+.. +.+|.++++.+|++..|..|.|-.|+..|+.+|.+|.+..
T Consensus 189 ~l~~~FP~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~ 265 (289)
T 1uoc_A 189 WVHQYMPNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRFSIFTTTGGQSLLMLLSFCQLSKLS 265 (289)
T ss_dssp HHHHHCSSEEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCccceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence 1235789887776543322 2479999999999988889999999999999999998765
No 24
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=98.24 E-value=3.1e-05 Score=76.91 Aligned_cols=172 Identities=18% Similarity=0.167 Sum_probs=118.7
Q ss_pred ccEEEEEEeeCCCCCCCC------------------CCCcEEEEcEEEEEcCCCeE-----eeEEEEeecCCCCCCCCcc
Q 015017 136 QYFVVIDFEATCDKDKNP------------------YPQEIIEFPSVIVSSVTGQL-----EACFQTYVRPTCNQLLSDF 192 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~------------------~~deIIEIgAV~vd~~~g~i-----~d~F~~lVkP~~~p~Ls~~ 192 (414)
..||++|+|.+|+..... +.-.|||||...+| .+|+. .-.|+-...... ....+.
T Consensus 45 ~~fVAmDtEFpGvv~rp~g~f~~~~e~~Yq~lR~NVd~l~iIQlGLt~fd-~~G~~p~~~~twqFNF~F~~~~-d~~~~~ 122 (333)
T 2p51_A 45 YPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSD-EEGNAPVEACTWQFNFTFNLQD-DMYAPE 122 (333)
T ss_dssp SCEEEEEEECCCCCCCCCSCCSSSHHHHHHHHHHHHHHSCCCEEEEEEEC-TTSCCCTTCSEEEEEBCCCTTT-SCCCHH
T ss_pred CCEEEEeeeccccccccccccCCCHHHHHHHHHHhhhhccceEEEEEEEc-cCCCCCCCceeEEEEEEECCcc-cccCHH
Confidence 489999999999853211 11369999999998 45653 455666644443 235555
Q ss_pred hhhh---cCCChhhhh-CCCCHHHHHHHHHHHHhhcCCC-CCcEEEEE-cCcchHHHHHHHHHHHcCCCCCCC-------
Q 015017 193 CKDL---TGIQQIQVD-RGVTLSEALLRHDKWLENKGIK-NTNFAVVT-WSNWDCRVMLESECRFKKIWKPPY------- 259 (414)
Q Consensus 193 ~~~L---TGIT~e~V~-~Ap~f~eVl~~f~~fl~~~~lv-~hn~~vV~-~g~fDir~fL~~~~~~~gi~~P~~------- 259 (414)
++++ +||.=+... ++.+.. +|.+.+-.++++ ..++.+++ ++.+|+ .||-+-+. +-++|.-
T Consensus 123 SI~fL~~~G~DF~k~~~~GI~~~----~F~elL~~SGLvl~~~V~Witfhg~YDf-gyLlK~Lt--~~~LP~~~~eF~~~ 195 (333)
T 2p51_A 123 SIELLTKSGIDFKKHQEVGIEPA----DFAELLIGSGLVLQEEVTWITFHSGYDF-AYLLKAMT--QIPLPAEYEEFYKI 195 (333)
T ss_dssp HHHHHHHTTCCHHHHHHHCBCHH----HHHHHHHTTTSSSCTTCEEEESSCHHHH-HHHHHHHH--CSCCCSSHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHcCCCHH----HHHHHHHhcCcccCCCceEEEeccchhH-HHHHHHhc--CCCCCCCHHHHHHH
Confidence 6655 588877654 677776 466666656554 34556665 588997 77776654 3345531
Q ss_pred ----CCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 260 ----FNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 260 ----~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
|-.++|++-+.+...+. ..+|..+++.+|++..|..|.|-.|++.|+.+|.+|.+..
T Consensus 196 l~~~FP~iYD~K~l~~~~~~l-~ggL~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~ 256 (333)
T 2p51_A 196 LCIYFPKNYDIKYIMKSVLNN-SKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRY 256 (333)
T ss_dssp HHHHSSSEEEHHHHHTTTTCC-CCCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcchhhHHHHHHHhccc-cCCHHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence 22467777666544332 3589999999999998999999999999999999998754
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.96 E-value=0.00016 Score=79.37 Aligned_cols=152 Identities=15% Similarity=0.099 Sum_probs=102.7
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
-..+.||+||||....++..++||.||.+.- ..+++ +. .+| |..+.|...++..+.|.
T Consensus 135 l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~--~~~~~---~t--~~~---------------i~~~~v~~~~~E~~LL~ 192 (775)
T 1qht_A 135 LTMLAFAIATLYHEGEEFGTGPILMISYADG--SEARV---IT--WKK---------------IDLPYVDVVSTEKEMIK 192 (775)
T ss_dssp CCEEEEEEEECCCTTCCTTCSCEEEEEEECS--SCEEE---EE--SSC---------------CCCSSEEECSCHHHHHH
T ss_pred cEEEEEEEEEcCCCCCCCCCCcEEEEEEEec--CCCee---Ee--ecc---------------ccccceEEcCCHHHHHH
Confidence 3899999999995444567899999986532 22221 11 112 22234666788999999
Q ss_pred HHHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHHHHHcCCCCCC-------------------C-CCceeehHHHHHHh
Q 015017 216 RHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRFKKIWKPP-------------------Y-FNRWINLKVPFHEV 273 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~~~~~gi~~P~-------------------~-~~~~IDl~~l~r~l 273 (414)
.|.+++..... . ++++| ..||+ .+|..-+..+|++++. + -...+|+..++++.
T Consensus 193 ~f~~~i~~~dP---D-iivGyN~~~FDl-pyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~~ 267 (775)
T 1qht_A 193 RFLRVVREKDP---D-VLITYNGDNFDF-AYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRT 267 (775)
T ss_dssp HHHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHHH
T ss_pred HHHHHHHhcCC---C-EEEEeCCCCccH-HHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHHh
Confidence 99999987421 1 34444 37996 8999888888887631 0 12357999889888
Q ss_pred cCCCCCCHHHHHH-HcCCCCCCCC------------------CcHHHHHHHHHHHHHHHH
Q 015017 274 FGGVRCNLKEAVE-MAGLAWQGRA------------------HCGLDDAKNTARLLALLM 314 (414)
Q Consensus 274 ~~~~~~~L~~l~~-~~gI~~~g~~------------------HrALdDA~aTA~Ll~~ll 314 (414)
+...+++|+++++ .+|.....-. +..+.||..|.+|+..++
T Consensus 268 ~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~ 327 (775)
T 1qht_A 268 INLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFF 327 (775)
T ss_dssp SCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7777899999997 5887532111 113678999988876654
No 26
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=97.75 E-value=6.7e-06 Score=92.43 Aligned_cols=54 Identities=11% Similarity=0.098 Sum_probs=49.2
Q ss_pred ccccCcchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhccccccchhhhcc
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (414)
.|..++.++|++|++||++|||||| |++++++++++.++++.|+++|+|+|.+.
T Consensus 129 DG~~~~~eLv~~A~~~G~~aiAITD--------H~~~~G~~~~~~~a~~~gIk~I~G~E~~~ 182 (1041)
T 3f2b_A 129 DAVTSVTKLIEQAKKWGHPAIAVTD--------HAVVQSFPEAYSAAKKHGMKVIYGLEANI 182 (1041)
T ss_dssp TCCSCHHHHHHHHHHTTCSCEEECC--------BSCCTTHHHHHHHHHHHTCCEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCCEEEEec--------ccchhhHHHHHHHHHHCCCEEEEEEEEEE
Confidence 4567899999999999999999995 77778999999999999999999999984
No 27
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0013 Score=73.67 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=101.2
Q ss_pred cEEEEEEeeCCCCCC--CCCCCcEEEEcEEEEEcCCCeE----eeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCH
Q 015017 137 YFVVIDFEATCDKDK--NPYPQEIIEFPSVIVSSVTGQL----EACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTL 210 (414)
Q Consensus 137 ~~VV~D~ETTGl~~~--~~~~deIIEIgAV~vd~~~g~i----~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f 210 (414)
..+.||+||++..+. ++..|+||+|+.+.-. .|.. ...|. +.+.. .|....|...++.
T Consensus 250 rilSfDIEt~~~~g~fP~~~~D~Ii~IS~~v~~--~g~~~~~~r~~f~--l~~~~------------~~~~~~V~~~~sE 313 (919)
T 3iay_A 250 RIMSFDIECAGRIGVFPEPEYDPVIQIANVVSI--AGAKKPFIRNVFT--LNTCS------------PITGSMIFSHATE 313 (919)
T ss_dssp EEEEEEEEECCCTTSCCCTTTCCEEEEEEEEEE--TTCSSCSEEEEEE--ESCCC------------CBTTBEEEEESSH
T ss_pred eEEEEEEEECCCCCCCCCCCCCcEEEEEEEEec--CCCcccceeEEEE--ecCCC------------CCCCCeEEECCCH
Confidence 689999999975442 3567999999987643 3321 11121 22211 1233456778899
Q ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHHHHHcCCCCC-CCC---------------------------
Q 015017 211 SEALLRHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRFKKIWKP-PYF--------------------------- 260 (414)
Q Consensus 211 ~eVl~~f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~~~~~gi~~P-~~~--------------------------- 260 (414)
.+.|..|.+|+....- . ++++| ..||+ .+|..-++.+|++.+ .+.
T Consensus 314 ~eLL~~F~~~i~~~DP---D-IIvGyNi~~FDl-pyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (919)
T 3iay_A 314 EEMLSNWRNFIIKVDP---D-VIIGYNTTNFDI-PYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNV 388 (919)
T ss_dssp HHHHHHHHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCB
T ss_pred HHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHcCCCchhhhccccCcccccccccccccccccccccee
Confidence 9999999999987421 2 34444 37996 899888888887632 110
Q ss_pred ----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCCC-------------------cHHHHHHHHHHHHHHH
Q 015017 261 ----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRAH-------------------CGLDDAKNTARLLALL 313 (414)
Q Consensus 261 ----~~~IDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g~~H-------------------rALdDA~aTA~Ll~~l 313 (414)
.-.+|+..++++.+...+++|++++++ +|....+-+| -.+.||..+.+|+.++
T Consensus 389 ~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl 465 (919)
T 3iay_A 389 NIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKL 465 (919)
T ss_dssp CCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 125688888888777889999999875 4533211111 1267999999998876
No 28
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=97.34 E-value=0.0026 Score=64.15 Aligned_cols=165 Identities=11% Similarity=0.036 Sum_probs=96.8
Q ss_pred cEEEEEEeeCCCCCC-CC--CCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhh------hcCCC---h---
Q 015017 137 YFVVIDFEATCDKDK-NP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD------LTGIQ---Q--- 201 (414)
Q Consensus 137 ~~VV~D~ETTGl~~~-~~--~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~------LTGIT---~--- 201 (414)
..+.||+||++ .+. ++ ..++||.|+.+-. .+++. ..| .+|++.... ..+.... +..++ .
T Consensus 107 ~vlsfDIEt~~-~~fP~~~~~~d~Ii~Is~~~~--~~~~~-~~~-~l~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~ 180 (388)
T 1noy_A 107 RVANCDIEVTG-DKFPDPMKAEYEIDAITHYDS--IDDRF-YVF-DLLNSMYGS-VSKWDAKLAAKLDCEGGDEVPQEIL 180 (388)
T ss_dssp CEEEEEEEECC-SSCCCTTTCCSCEEEEEEEET--TTTEE-EEE-EECCCSSCC-CCCCCHHHHHSCGGGTCCCCCHHHH
T ss_pred EEEEEEEEeCC-CCCCCCCCCCCeEEEEEEEEe--cCCeE-EEE-EEeeccCCC-CCccccccccccccccccccccccC
Confidence 78999999998 221 12 2469999987533 34431 112 235443111 1111110 11111 1
Q ss_pred --hhhhCCCCHHHHHHHHHHHHhhcCCCCCcEEEEE-cC-cchHHHHHHHHHHH-cCCC-------CC--------C-C-
Q 015017 202 --IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVT-WS-NWDCRVMLESECRF-KKIW-------KP--------P-Y- 259 (414)
Q Consensus 202 --e~V~~Ap~f~eVl~~f~~fl~~~~lv~hn~~vV~-~g-~fDir~fL~~~~~~-~gi~-------~P--------~-~- 259 (414)
-.|...++..+.|..|.+++..... . ++++ ++ .||+ .+|..-++. +|+. +. . +
T Consensus 181 ~~v~v~~~~~E~~LL~~f~~~i~~~dP---D-ii~GyN~~~FDl-pyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g 255 (388)
T 1noy_A 181 DRVIYMPFDNERDMLMEYINLWEQKRP---A-IFTGWNIEGFDV-PYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYG 255 (388)
T ss_dssp TTEEEEEESCHHHHHHHHHHHHHHSCC---S-EEECSSTTTTHH-HHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGC
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHHhCC---c-EEEecCCCCccH-HHHHHHHHHHcCCccccccCcccccccccChhhhC
Confidence 1123567889999999999976421 1 3443 33 7996 777777665 5521 11 0 0
Q ss_pred -------C-CceeehHHHHHHh-cC-CCCCCHHHHHH-HcCCCCCCCCCc----------------HHHHHHHHHHHHHH
Q 015017 260 -------F-NRWINLKVPFHEV-FG-GVRCNLKEAVE-MAGLAWQGRAHC----------------GLDDAKNTARLLAL 312 (414)
Q Consensus 260 -------~-~~~IDl~~l~r~l-~~-~~~~~L~~l~~-~~gI~~~g~~Hr----------------ALdDA~aTA~Ll~~ 312 (414)
. .-.+|+..+++.+ +. ..+++|+++++ .+|.... ..+. .+.||..|.+|+.+
T Consensus 256 ~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~-d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~L~~k 334 (388)
T 1noy_A 256 SKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKL-PYDGPINKLRETNHQRYISYNIIDVESVQAIDKI 334 (388)
T ss_dssp SCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCC-CcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0167999888884 65 77899999998 6665433 2112 47899999999887
Q ss_pred H
Q 015017 313 L 313 (414)
Q Consensus 313 l 313 (414)
+
T Consensus 335 l 335 (388)
T 1noy_A 335 R 335 (388)
T ss_dssp H
T ss_pred H
Confidence 4
No 29
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.23 E-value=0.0016 Score=72.17 Aligned_cols=155 Identities=21% Similarity=0.130 Sum_probs=97.3
Q ss_pred cEEEEEEee-CCCCCCCCC----CCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHH
Q 015017 137 YFVVIDFEA-TCDKDKNPY----PQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLS 211 (414)
Q Consensus 137 ~~VV~D~ET-TGl~~~~~~----~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~ 211 (414)
.+++||+|| |+..++.|. .+.||+||.+ + .+|. .-..+++|.. .+..+.. |....|..-++..
T Consensus 191 ~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~--~-~~g~---~~~~~~~~~~---~~~~~~~---i~~~~v~~~~~E~ 258 (847)
T 1s5j_A 191 KRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA--G-SDGL---KKVLVLNRND---VNEGSVK---LDGISVERFNTEY 258 (847)
T ss_dssp CEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE--E-TTSC---EEEEEECSSC---CCCCCEE---ETTEEEEEESSHH
T ss_pred eEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE--c-cCCC---cEEEEEeCCc---ccccccC---CCCCeEEEeCCHH
Confidence 789999999 764333343 3799999985 3 3442 1234566642 2222111 3334456677899
Q ss_pred HHHHHHHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHHHHHcCCCC---CC-C---------CCceeehHHHHHH----
Q 015017 212 EALLRHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRFKKIWK---PP-Y---------FNRWINLKVPFHE---- 272 (414)
Q Consensus 212 eVl~~f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~~~~~gi~~---P~-~---------~~~~IDl~~l~r~---- 272 (414)
+.|.+|.+|+.+. . ++++| ..||+ .+|...+.++|+.. |. + ....+|+...++.
T Consensus 259 ~LL~~f~~~i~~~-----d-iivgyN~~~FDl-PyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~~~~~ 331 (847)
T 1s5j_A 259 ELLGRFFDILLEY-----P-IVLTFNGDDFDL-PYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNKAVR 331 (847)
T ss_dssp HHHHHHHHHHTTC-----S-EEEESSTTTTHH-HHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSHHHH
T ss_pred HHHHHHHHHhccC-----C-EEEEeCCCCchH-HHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhhhhhh
Confidence 9999999999763 3 46665 37997 89999999888863 21 1 1234687665532
Q ss_pred --hcC--CCCCCHHHHHH-HcCCCCCC------CC------CcHHHHHHHHHHHH
Q 015017 273 --VFG--GVRCNLKEAVE-MAGLAWQG------RA------HCGLDDAKNTARLL 310 (414)
Q Consensus 273 --l~~--~~~~~L~~l~~-~~gI~~~g------~~------HrALdDA~aTA~Ll 310 (414)
.+. ..+++|+++++ .+|..-.. +. +-.+.||..|.+|+
T Consensus 332 ~y~f~~kl~sysL~~Va~~~Lg~~K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~ 386 (847)
T 1s5j_A 332 NYAFEGKYNEYNLDAVAKALLGTSKVKVDTLISFLDVEKLIEYNFRDAEITLQLT 386 (847)
T ss_dssp HHTSTTCCSSCSHHHHHHHHHCCCCC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccccccHHHHHHHHhCCCCcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 122 35789999998 56643211 10 11367999998884
No 30
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.17 E-value=0.0029 Score=72.47 Aligned_cols=169 Identities=14% Similarity=0.056 Sum_probs=99.4
Q ss_pred cEEEEEEeeCCCC---CCCC----CCCcEEEEcEEEEEcCCCeEeeEEEEeec-CCCCCCCCcch--hhhcCCChhhhhC
Q 015017 137 YFVVIDFEATCDK---DKNP----YPQEIIEFPSVIVSSVTGQLEACFQTYVR-PTCNQLLSDFC--KDLTGIQQIQVDR 206 (414)
Q Consensus 137 ~~VV~D~ETTGl~---~~~~----~~deIIEIgAV~vd~~~g~i~d~F~~lVk-P~~~p~Ls~~~--~~LTGIT~e~V~~ 206 (414)
..+.||+||++.. .+.| ..|+||+|+.+.....+... ...+|. ......+.++. .+-.++....|..
T Consensus 321 rvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~---~~~~v~~l~~~~~~~~f~~~~k~~~~~~~~V~~ 397 (1193)
T 2gv9_A 321 KLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTAL---EHVLLFSLGSCDLPESHLNELAARGLPTPVVLE 397 (1193)
T ss_dssp EEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCE---EEEEEEEESCCCCCHHHHHHHHHTTCCCCEEEE
T ss_pred eEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCCc---ceEEEEECCCcCCcchhhhhcccccCCCceEEe
Confidence 7899999998641 1122 35899999988765222111 122222 11101111111 0111222223556
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHH-HHHcCCCCCCCC-----------------------
Q 015017 207 GVTLSEALLRHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESE-CRFKKIWKPPYF----------------------- 260 (414)
Q Consensus 207 Ap~f~eVl~~f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~-~~~~gi~~P~~~----------------------- 260 (414)
-++..+.|..|.+++....- . ++++| ..||+ .+|..- ...+|++++.+.
T Consensus 398 ~~sE~eLL~~F~~~I~~~DP---D-IIvGyNi~~FDl-pyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~~~~f~~~~~ 472 (1193)
T 2gv9_A 398 FDSEFEMLLAFMTLVKQYGP---E-FVTGYNIINFDW-PFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSK 472 (1193)
T ss_dssp ESSHHHHHHHHHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHTTCCCCTTTSSBSSSCCEEECC----------C
T ss_pred cCCHHHHHHHHHHHHHhcCC---C-EEEEcCCcCccH-HHHHHHHHHHcCCChHHhcccccCCcceeeccccccccccce
Confidence 67899999999999987521 1 34444 37996 677665 466787765321
Q ss_pred -----CceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCCCC-------------------CcHHHHHHHHHHHHHHH
Q 015017 261 -----NRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQGRA-------------------HCGLDDAKNTARLLALL 313 (414)
Q Consensus 261 -----~~~IDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g~~-------------------HrALdDA~aTA~Ll~~l 313 (414)
...+|+..+.++.+...+++|++++++ +|....+-. +..+.||..+.+|+.++
T Consensus 473 ~~i~GRv~lDl~~~~~~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~lt~~L~~kl 550 (1193)
T 2gv9_A 473 IKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKF 550 (1193)
T ss_dssp EEETTBEEEEHHHHHTTTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCeEeehHHHHHHHHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 024688777776667778999999975 665432111 12257899999988876
No 31
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=97.12 E-value=0.00012 Score=81.80 Aligned_cols=54 Identities=6% Similarity=-0.005 Sum_probs=49.0
Q ss_pred ccccCcchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhccccccchhhhcc
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (414)
-|..++.++|++|+++|+++||||| |+.+.++++++.+.++.|+++|+|+|.+.
T Consensus 19 DG~~~~~elv~~A~~~Gl~alAITD--------H~~~~G~~~~~~~~~~~gIk~I~G~Ei~~ 72 (910)
T 2hnh_A 19 DGLAKTAPLVKKAAALGMPALAITD--------FTNLCGLVKFYGAGHGAGIKPIVGADFNV 72 (910)
T ss_dssp SCCSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHCCCCEEEEEe--------CCcchhHHHHHHHHHHCCCeEEEEEEEEE
Confidence 4678899999999999999999995 77778999999999999999999999883
No 32
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=96.83 E-value=0.015 Score=60.92 Aligned_cols=85 Identities=14% Similarity=-0.076 Sum_probs=55.4
Q ss_pred cEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHHHH--hcC-CCCCCHHHHHHHcC-----C
Q 015017 230 NFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPFHE--VFG-GVRCNLKEAVEMAG-----L 290 (414)
Q Consensus 230 n~~vV~~g~fDir~fL~~~~~~~gi~~P~-----------~~~~~IDl~~l~r~--l~~-~~~~~L~~l~~~~g-----I 290 (414)
+.+|.|++-.|+ .+|...+- + ++|. +|...+||+-+... +.. ....+|..+.+.+. .
T Consensus 277 kpiVgHN~l~Dl-~~l~~~F~--~-pLP~~~~eFk~~i~~lFP~i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~ 352 (507)
T 3d45_A 277 KLVVGHNMLLDV-MHTIHQFY--C-PLPADLNEFKEMAICVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDP 352 (507)
T ss_dssp CEEEESSCHHHH-HHHHHHHT--C-SCCSSHHHHHHHHHHHCSCEEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCC
T ss_pred CeEEEechHHHH-HHHHHHhc--C-CCCCCHHHHHHHHHHhCCceeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCC
Confidence 445666777897 66766553 2 4442 12356888765432 111 12468999999886 2
Q ss_pred CC-------------CCCCCcHHHHHHHHHHHHHHHHHhcC
Q 015017 291 AW-------------QGRAHCGLDDAKNTARLLALLMHRGF 318 (414)
Q Consensus 291 ~~-------------~g~~HrALdDA~aTA~Ll~~ll~~~~ 318 (414)
|. .+..|.|-.||..|+.+|.+|.....
T Consensus 353 p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~ 393 (507)
T 3d45_A 353 PKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG 393 (507)
T ss_dssp CCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 22 34579999999999999999987643
No 33
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=96.68 E-value=0.0057 Score=64.53 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=85.3
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHHH
Q 015017 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 216 (414)
Q Consensus 137 ~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~~ 216 (414)
..++||+|++++ ++...+++-|+.. . .++. + +| + +++..
T Consensus 11 ~~valDtE~~~~---~~~~a~Lvgi~la--~--~~~a---~--~i--------~---------------------~~l~~ 49 (540)
T 4dfk_A 11 EGAFVGFVLSRK---EPMWADLLALAAA--R--GGRV---H--RA--------P---------------------EPYKA 49 (540)
T ss_dssp TTCEEEEEESSS---CTTTCCEEEEEEE--E--TTEE---E--EC--------S---------------------SHHHH
T ss_pred CceEEEEEecCC---ccCcccEEEEEEE--c--CCEE---E--Ee--------h---------------------hhHHH
Confidence 459999999997 5667777766444 2 3332 2 11 0 36688
Q ss_pred HHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHcCCCCCCCC
Q 015017 217 HDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRA 296 (414)
Q Consensus 217 f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~gI~~~g~~ 296 (414)
|.+|+++..+++||+ .||+ . +.|+.++ ..+||+.....+.+. +++|++++++|...+ .
T Consensus 50 l~~~l~d~~kV~hn~------K~Dl-~-------~~Gi~~~----~~fDT~laAyLL~p~-~~~L~~La~~yl~~~---g 107 (540)
T 4dfk_A 50 LRDLKEARGLLAKDL------SVLA-L-------REGLGLP----PGDDPMLLAYLLDPS-NTTPEGVARRYGGEW---T 107 (540)
T ss_dssp HTTCSSBCSTTHHHH------HHHH-H-------HTTCCCC----BCCCHHHHHHHHCTT-CCCHHHHHHHHTSCC---C
T ss_pred HHHHHcCCCEEEecc------HHHH-H-------HcCCCCC----cceeHHHHHHHhCCC-CCCHHHHHHHHhhhh---c
Confidence 888998854555554 8886 3 6788753 467998777777777 899999999886543 3
Q ss_pred CcHHHHHHHHHHHHHHHHHhc
Q 015017 297 HCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 297 HrALdDA~aTA~Ll~~ll~~~ 317 (414)
|.|..||.+|.+|+..|..+.
T Consensus 108 k~a~~DA~~t~~L~~~L~~~L 128 (540)
T 4dfk_A 108 EEAGERAALSERLFANLWGRL 128 (540)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 689999999999999888766
No 34
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=96.51 E-value=0.00079 Score=66.12 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=48.1
Q ss_pred ccccCcchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhccccccchhhhc
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQ 104 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 104 (414)
-+..++.++|++|++.|.++||||| |..+..+++++.++++.+++.+.|+|-.
T Consensus 25 DG~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~~i~GvEis 77 (301)
T 3o0f_A 25 DGTETPRTLVEQARKLGLHGVAIAD--------HDTTAGWDEATEASEEIGLPLLLGTEIT 77 (301)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEECC--------BTCCTTHHHHHHHHHHHTCCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEcC--------CCccccHHHHHHHHHhcCCEEEEEEEEE
Confidence 4678899999999999999999994 7777899999998999999999999876
No 35
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=96.38 E-value=0.00078 Score=77.03 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=48.7
Q ss_pred ccccCcchhhhhhhh--cCCceeeecccCCCCCCCCCCcCCchhhcchhhhccccccchhhhcc
Q 015017 44 TIVHPGGDAGESIHQ--LSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~--~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (414)
.|..++.++|++|++ +|++|||||| |+...+.+++|.+.++.|+++|.|+|.+.
T Consensus 20 DG~~~~~elv~~A~~~~~G~~alAITD--------H~~~~G~~~f~~~a~~~gIk~I~G~E~~~ 75 (1220)
T 2hpi_A 20 DGAAKLQDLLKWVKETTPEDPALAMTD--------HGNLFGAVEFYKKATAMGVKPIIGYEAYV 75 (1220)
T ss_dssp TCCCCHHHHHHHHHHHCCSSCEEEEEE--------ETCCTTHHHHHHHHHTTTCEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHhccCCCCEEEEEe--------cCcchhHHHHHHHHHHcCCeEEEEEEEEE
Confidence 467889999999999 9999999995 66667999999999999999999999884
No 36
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=95.81 E-value=0.0031 Score=60.98 Aligned_cols=53 Identities=6% Similarity=-0.009 Sum_probs=46.3
Q ss_pred ccccCcchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchhhhccccccchhhhc
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDSQKVHHCQMNSFESQ 104 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~~k~~~~~~~g~e~~ 104 (414)
-|..++.++|++|++.|.++||||| |..+..+++++...++.+++++.|+|-.
T Consensus 14 Dg~~~~~elv~~A~~~Gl~~iaiTD--------H~~~~g~~~~~~~~~~~gi~vi~G~Ei~ 66 (292)
T 2yb1_A 14 DGALTPTEVIDRAAARAPALLALTD--------HDCTGGLAEAAAAAARRGIPFLNGVEVS 66 (292)
T ss_dssp TCSSCHHHHHHHHHTTCCSEEEECC--------BTCCTTHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEec--------CCccccHHHHHHHHHHcCCEEEEEEEEE
Confidence 3667888999999999999999995 6666788888887888999999999977
No 37
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=95.62 E-value=0.095 Score=58.43 Aligned_cols=167 Identities=11% Similarity=0.053 Sum_probs=96.9
Q ss_pred ccEEEEEEeeCCCCCC-CC--CCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhh---------hcCCChhh
Q 015017 136 QYFVVIDFEATCDKDK-NP--YPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKD---------LTGIQQIQ 203 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~-~~--~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~---------LTGIT~e~ 203 (414)
-..+.||+|++...+. ++ ..++||.|+.+ |..+.+. -.|..+-.|.. ...++..+ -..+..+.
T Consensus 108 ir~~~~DIEv~~~~~fPd~~~~~~~Ii~It~~--d~~~~~~-~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (903)
T 3qex_A 108 IRVANFDIEVTSPDGFPEPSQAKHPIDAITHY--DSIDDRF-YVFDLLNSPYG--NVEEWSIEIAAKLQEQGGDEVPSEI 182 (903)
T ss_dssp SCEEEEEEECCCTTSSCCTTTCCSCCCEEEEE--ETTTTEE-EEEEECEETTE--ECCCCCHHHHHSCGGGTCCCCCHHH
T ss_pred ccEEEEeEEeCCCCCCCCcccCCCCEEEEEEE--eCCCCEE-EEEEeeccccc--ccccccccccccccccccccccccc
Confidence 4889999999875332 12 36899999877 6444442 12212222211 11122111 11233333
Q ss_pred hh-----CCCCHHHHHHHHHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHHHHH-cCCCC----CCCC-----------
Q 015017 204 VD-----RGVTLSEALLRHDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRF-KKIWK----PPYF----------- 260 (414)
Q Consensus 204 V~-----~Ap~f~eVl~~f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~~~~-~gi~~----P~~~----------- 260 (414)
++ .-++..+.|.+|.+|+....- . +|++| ..||+ .+|..-++. +|+.. +.+.
T Consensus 183 ~~~v~v~~f~sE~eLL~~F~~~I~~~DP---D-IItGyN~~~FDl-PYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~~ 257 (903)
T 3qex_A 183 IDKIIYMPFDNEKELLMEYLNFWQQKTP---V-ILTGWNVESFAI-PYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMY 257 (903)
T ss_dssp HTTEEEEEESSHHHHHHHHHHHHHHTCC---S-EEECSSTTTTHH-HHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEETT
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHHhCC---C-EEEecCCccCCH-HHHHHHHHHHcCCcccccccccccccccchhhhc
Confidence 33 246888999999999986421 1 34434 37996 788777765 56531 1111
Q ss_pred ----------CceeehHHHHHHh-c-CCCCCCHHHHHHHcCCCCCCCCCc----------------HHHHHHHHHHHHHH
Q 015017 261 ----------NRWINLKVPFHEV-F-GGVRCNLKEAVEMAGLAWQGRAHC----------------GLDDAKNTARLLAL 312 (414)
Q Consensus 261 ----------~~~IDl~~l~r~l-~-~~~~~~L~~l~~~~gI~~~g~~Hr----------------ALdDA~aTA~Ll~~ 312 (414)
.-.+|+..++++. + +..+++|+++++++.-.-....|. .+.||..+.+|+.+
T Consensus 258 G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~L~~K 337 (903)
T 3qex_A 258 GSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIAVYRVLQIDAK 337 (903)
T ss_dssp EEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 1256888888764 2 456899999987654322111111 26799999999877
No 38
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=95.06 E-value=0.005 Score=61.42 Aligned_cols=62 Identities=6% Similarity=-0.069 Sum_probs=49.0
Q ss_pred ccccCcchhhhhhhhcCCceeeecccCCCCCC----CCCCcCCchhhcchhhhccccccchhhhcc
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEFYNNPT----YQHDFGSWSTFYPDSQKVHHCQMNSFESQF 105 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~~~~~~----~h~~~q~~p~~~~~~~k~~~~~~~g~e~~~ 105 (414)
.+..++.+++++|++.|.++||||||....|. ....+.+|.+++..+++.++++++|+|-..
T Consensus 31 Dg~~~~~elv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi~G~Ei~~ 96 (343)
T 3e38_A 31 DGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITR 96 (343)
T ss_dssp TCSBCHHHHHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEECCEEEEEC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEEEEEEEEE
Confidence 46678889999999999999999998655321 013456788888778888999999999763
No 39
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=94.48 E-value=0.98 Score=49.63 Aligned_cols=148 Identities=13% Similarity=0.152 Sum_probs=90.9
Q ss_pred cEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHHH
Q 015017 137 YFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLR 216 (414)
Q Consensus 137 ~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~~ 216 (414)
..+.||+|+.+. .+|++||.. + .. . +..-++=.+.. . - .|.+..|..-++..+.|..
T Consensus 154 rilsfDIE~~~~-------g~i~~I~~~--~-~~-~--~~v~~l~~~~~-~-~--------~~~~~~V~~f~~E~~lL~~ 210 (786)
T 3k59_A 154 KWVSIDIETTRH-------GELYCIGLE--G-CG-Q--RIVYMLGPENG-D-A--------SSLDFELEYVASRPQLLEK 210 (786)
T ss_dssp CEEEEEEEECTT-------SCEEEEEEE--E-TT-E--EEEEEESSCCS-C-C--------TTCSSEEEEESSHHHHHHH
T ss_pred eEEEEEEEEcCC-------CCEEEEEec--C-CC-C--CeEEEEecCCC-C-C--------CCCCceEEEeCCHHHHHHH
Confidence 789999999942 369999843 3 11 1 11112211211 0 0 1223345556688999999
Q ss_pred HHHHHhhcCCCCCcEEEEEc--CcchHHHHHHHHHHHcCCCCCCC-------------C-----------CceeehHHHH
Q 015017 217 HDKWLENKGIKNTNFAVVTW--SNWDCRVMLESECRFKKIWKPPY-------------F-----------NRWINLKVPF 270 (414)
Q Consensus 217 f~~fl~~~~lv~hn~~vV~~--g~fDir~fL~~~~~~~gi~~P~~-------------~-----------~~~IDl~~l~ 270 (414)
|.+++..... . ++++| ..||+ .+|..-+..+|+++- + + .-.+|+..+.
T Consensus 211 f~~~i~~~dP---D-ii~g~N~~~FD~-pyL~~Ra~~~~i~~~-lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~l 284 (786)
T 3k59_A 211 LNAWFANYDP---D-VIIGWNVVQFDL-RMLQKHAERYRLPLR-LGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEAL 284 (786)
T ss_dssp HHHHHHHHCC---S-EEEESSTTTTHH-HHHHHHHHHHTCCCC-CBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHH
T ss_pred HHHHHHHcCC---C-EEEecCCccCcH-HHHHHHHHHhCCCce-eccCCCcccccccccCCCceeEEEcCEEEEEhHHHH
Confidence 9999987521 1 34444 37996 888888888777641 1 0 1246777777
Q ss_pred HH-hcCCCCCCHHHHHHHc-CCCCCC-CCC-------------------cHHHHHHHHHHHHHHH
Q 015017 271 HE-VFGGVRCNLKEAVEMA-GLAWQG-RAH-------------------CGLDDAKNTARLLALL 313 (414)
Q Consensus 271 r~-l~~~~~~~L~~l~~~~-gI~~~g-~~H-------------------rALdDA~aTA~Ll~~l 313 (414)
+. .+...+++|+++++++ |..-.. ..| -.+.||..+.+|+.++
T Consensus 285 k~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl 349 (786)
T 3k59_A 285 KSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT 349 (786)
T ss_dssp HHTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 75 3567789999999875 432211 111 1268999999998874
No 40
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=91.52 E-value=0.45 Score=50.64 Aligned_cols=132 Identities=15% Similarity=0.023 Sum_probs=83.1
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
..-.+||+||+++ ++...+++-|+.. + . .+ ..|| |. .. .+++.
T Consensus 29 ~~~~aldtE~~~~---~~~~a~Lvgisla--~-~-~~-----a~yI-p~-----~~-------------------~~~l~ 71 (592)
T 3pv8_A 29 ADKAALVVEVVEE---NYHDAPIVGIAVV--N-E-HG-----RFFL-RP-----ET-------------------ALADP 71 (592)
T ss_dssp CSEEEEEEECCSS---SCTTCCCCEEEEE--E-T-TE-----EEEE-CH-----HH-------------------HTTCH
T ss_pred ccCcEEEEEEcCC---ccCcccEEEEEEE--c-C-Cc-----eEEE-cc-----ch-------------------hhHHH
Confidence 3567999999997 5667777665433 2 2 22 2444 21 00 23456
Q ss_pred HHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCCC
Q 015017 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAWQ 293 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~~ 293 (414)
.|.+|+++..+ ..++|+..+|+ .+|. ++|+.++ ..++||.-....+-+ ..+++|++++++| |....
T Consensus 72 ~Lk~lLed~~i----~KV~hn~K~Dl-~vL~----~~Gi~l~---g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~ 139 (592)
T 3pv8_A 72 QFVAWLGDETK----KKSMFDSKRAA-VALK----WKGIELC---GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVR 139 (592)
T ss_dssp HHHHHHTCTTS----EEEESSHHHHH-HHHH----HTTCCCC---CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSC
T ss_pred HHHHHHhCCCC----eEEEechHHHH-HHHH----HcCCCCC---CccchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCc
Confidence 78888887532 34667779996 5664 5788764 357898765554444 3478999999876 44321
Q ss_pred --------C----------CCCcHHHHHHHHHHHHHHHHHh
Q 015017 294 --------G----------RAHCGLDDAKNTARLLALLMHR 316 (414)
Q Consensus 294 --------g----------~~HrALdDA~aTA~Ll~~ll~~ 316 (414)
| ..+.|..||..|.+|+..|..+
T Consensus 140 ~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~ 180 (592)
T 3pv8_A 140 PDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDE 180 (592)
T ss_dssp CHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0134678999999988777554
No 41
>1m65_A Hypothetical protein YCDX; structural genomics, beta-alpha-barrel, metallo-enzyme, STRU function project, S2F, unknown function; 1.57A {Escherichia coli} SCOP: c.6.3.1 PDB: 1m68_A 1pb0_A
Probab=89.35 E-value=0.12 Score=47.47 Aligned_cols=54 Identities=6% Similarity=-0.105 Sum_probs=37.0
Q ss_pred cccCcchhhhhhhhcCCceeeecccCCCCCCCCCCcCCchh-h----cchh--hhccccccchhhhcc
Q 015017 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWST-F----YPDS--QKVHHCQMNSFESQF 105 (414)
Q Consensus 45 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~-~----~~~~--~k~~~~~~~g~e~~~ 105 (414)
+..++.++|++|++-|-++|+||||... ...++. . ..+. +..+++++.|+|-.+
T Consensus 16 g~~~~~e~v~~A~~~Gl~~iaiTDH~~~-------~~~~~~~~~~~~~~~~~~~~~~i~v~~G~Ei~~ 76 (245)
T 1m65_A 16 AYSTLSDYIAQAKQKGIKLFAITDHGPD-------MEDAPHHWHFINMRIWPRVVDGVGILRGIEANI 76 (245)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEEEEECTT-------STTCCCTHHHHGGGGSCSEETTEEEEEEEEEEB
T ss_pred CCCcHHHHHHHHHHCCCCEEEECCCCCC-------CCCCcHHHHHHHHHHHHHhcCCCeEEEEEEeee
Confidence 3446789999999999999999987651 111111 1 1222 346889999999874
No 42
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=89.34 E-value=5.6 Score=40.55 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=78.5
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
...|.||+||++. .+...++.-|. +-..+ . ..+|.|.. +. +.+.
T Consensus 129 ~~~vavDtE~~~~---~~~~~~l~lIQ---La~~~-~-----~~lidpl~---l~---------------------~~l~ 172 (428)
T 3saf_A 129 CQEFAVNLEHHSY---RSFLGLTCLMQ---ISTRT-E-----DFIIDTLE---LR---------------------SDMY 172 (428)
T ss_dssp CSEEEEEEEEECT---TCSSCEEEEEE---EECSS-C-----EEEEETTT---TG---------------------GGGG
T ss_pred CCeEEEEEEecCC---CCCCCeEEEEE---EEeCC-c-----EEEEEecc---ch---------------------hhHH
Confidence 4789999999976 34445443222 21122 1 24666652 21 1234
Q ss_pred HHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHH-cCCCCCC
Q 015017 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEM-AGLAWQG 294 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~~~L~~l~~~-~gI~~~g 294 (414)
.|.+++.+..+ .-|.|+..+|+ ..|. +..|+.. ...+||.... .+++..+++|++++++ +|+....
T Consensus 173 ~L~~lL~dp~i----~KV~H~~k~Dl-~~L~---~~~Gi~~----~~~fDT~lAa-~lL~~~~~gL~~Lv~~~Lg~~l~K 239 (428)
T 3saf_A 173 ILNESLTDPAI----VKVFHGADSDI-EWLQ---KDFGLYV----VNMFDTHQAA-RLLNLGRHSLDHLLKLYCNVDSNK 239 (428)
T ss_dssp GGHHHHTCTTS----EEEESSCHHHH-HHHH---HHHCCCC----SSEEEHHHHH-HHTTCSCCSHHHHHHHHHCCCCCC
T ss_pred HHHHHHcCCCc----eEEEeehHHHH-HHHH---HHcCCCc----CceeechhHH-HHhCCCCCCHHHHHHHHcCCCCCc
Confidence 55666776432 23556678896 5553 3567763 2468987544 4555446799999865 5655421
Q ss_pred C---------------CCcHHHHHHHHHHHHHHHHHhc
Q 015017 295 R---------------AHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 295 ~---------------~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
. .+-|..||..+.+|+..|..+.
T Consensus 240 ~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L 277 (428)
T 3saf_A 240 QYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEM 277 (428)
T ss_dssp TTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1346789999999988876553
No 43
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=89.00 E-value=0.11 Score=54.91 Aligned_cols=61 Identities=3% Similarity=-0.158 Sum_probs=39.8
Q ss_pred cccCcchhhhhhhhcCCceeeecccCCCCCCCCCC-cCCchhh---cchh-hh-ccccccchhhhcc
Q 015017 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQHD-FGSWSTF---YPDS-QK-VHHCQMNSFESQF 105 (414)
Q Consensus 45 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~~-~q~~p~~---~~~~-~k-~~~~~~~g~e~~~ 105 (414)
|..++.+++++|+++|.++|+||||.......++. ...+++. +.+. ++ .++++++|+|.++
T Consensus 350 G~~t~ee~v~~A~~~G~~~iaiTDH~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~i~i~~G~Ei~~ 416 (575)
T 3b0x_A 350 GQNTLEELWEAAKTMGYRYLAVTDHSPAVRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGAEVDI 416 (575)
T ss_dssp CSCCHHHHHHHHHHTTCSEEEEEEECTTTTTSSCSCHHHHHHHHHHHHHHHHHHCSSEEEEEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCCEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 44577899999999999999999877663111100 0122222 2222 23 4899999999885
No 44
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=88.74 E-value=1.4 Score=46.55 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=76.8
Q ss_pred ccEEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHH
Q 015017 136 QYFVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALL 215 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~ 215 (414)
+.++++||||+. ++..+.++-+|+ ++.. . ...|.. . .. +.
T Consensus 6 ~~i~~~D~Et~~----d~~~~~~~~i~~--~~~~--~-~~~~~~-------------------~--------~~----l~ 45 (575)
T 2py5_A 6 RKMYSCAFETTT----KVEDCRVWAYGY--MNIE--D-HSEYKI-------------------G--------NS----LD 45 (575)
T ss_dssp CCEEEEEEEECC----BTTBCCEEEEEE--EESS--C-TTCEEE-------------------E--------SC----HH
T ss_pred ceEEEEEEEeec----CCCCCceEEEEE--EeCC--c-eEEEEe-------------------c--------hh----HH
Confidence 479999999985 455667888775 3421 1 111110 0 01 46
Q ss_pred HHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCC-----CCCC-------CCc----------------eeehH
Q 015017 216 RHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIW-----KPPY-------FNR----------------WINLK 267 (414)
Q Consensus 216 ~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~-----~P~~-------~~~----------------~IDl~ 267 (414)
+|++|+.... ..+++|+..||. .||.+.+...|.. .|.. ... .++++
T Consensus 46 ~fi~~~~~~~----~~i~~hNl~FD~-~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~i~~~~~~k~~~~i~~~ 120 (575)
T 2py5_A 46 EFMAWVLKVQ----ADLYFHNLKFAG-AFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMIDICLGYKGKRKIHTVIY 120 (575)
T ss_dssp HHHHHHHHHC----CEEEETTHHHHH-HHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHcC----CEEEEEChhhhH-HHHHHHHHHhCcccccccccccccceeccCCeEEEEEEEEecCCCceEEEEEE
Confidence 7778886532 234557778996 7888888877521 1111 001 12222
Q ss_pred HHHHHhcCCCCCCHHHHHHHcCCCCCC---------------C---CCcHHHHHHHHHHHHHHHHHh
Q 015017 268 VPFHEVFGGVRCNLKEAVEMAGLAWQG---------------R---AHCGLDDAKNTARLLALLMHR 316 (414)
Q Consensus 268 ~l~r~l~~~~~~~L~~l~~~~gI~~~g---------------~---~HrALdDA~aTA~Ll~~ll~~ 316 (414)
..++.+ +.+|+.+++.|+++... . .+-.+.|++.|++++...+..
T Consensus 121 Ds~~~~----~~SL~~~a~~f~~~~~K~~~py~~~~~~~~~~~~~~~~Y~~~Dv~ll~~i~~~~f~~ 183 (575)
T 2py5_A 121 DSLKKL----PFPVKKIAKDFKLTVLKGDIDYHKERPVGYKITPEEYAYIKNDIQIIAEALLIQFKQ 183 (575)
T ss_dssp EHHHHS----CSCHHHHHHHTTCCCCSSCCCTTSCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EhHhhh----hhhHHHHHHHhCCcccCCccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222221 46999999999987210 0 122478999999988876543
No 45
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=87.53 E-value=0.17 Score=47.07 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=38.9
Q ss_pred cccCcchhhhhhhhcCCceeeecccCCCCC---CCCC-CcCCchhh----cchhhhc-cccccchhhhcc
Q 015017 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNP---TYQH-DFGSWSTF----YPDSQKV-HHCQMNSFESQF 105 (414)
Q Consensus 45 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~---~~h~-~~q~~p~~----~~~~~k~-~~~~~~g~e~~~ 105 (414)
|..++.++|++|++-|-++||||||..... ...+ ....++.+ ....++. +++++.|+|..+
T Consensus 14 G~~~~ee~v~~A~~~Gl~~iaiTDH~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~i~i~~G~Ei~~ 83 (267)
T 2yxo_A 14 AEGHPEAYLEEARAKGLKGVVFTDHSPMPPWYDPESRMRLEALPFYLLALERVRERAQDLYVGIGLEADF 83 (267)
T ss_dssp CCSCHHHHHHHHHHTTCSEEEEEEECCCCTTSSGGGSCCGGGHHHHHHHHHHHHHHCTTSEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHcCCCEEEEcCCCCCCcccCccccccHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 556778999999999999999998766520 0000 00112222 1222332 899999999874
No 46
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=81.63 E-value=7.4 Score=39.57 Aligned_cols=104 Identities=13% Similarity=0.003 Sum_probs=64.2
Q ss_pred hhhhCCCCHHHHHHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCC-----------CCCceeehHHHH
Q 015017 202 IQVDRGVTLSEALLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPP-----------YFNRWINLKVPF 270 (414)
Q Consensus 202 e~V~~Ap~f~eVl~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~-----------~~~~~IDl~~l~ 270 (414)
+.+.++..|..|++.+.+ + ++.+|.|+.=.|+ -++...+ .| ++|. +|-..+||+-+.
T Consensus 262 ~~l~~~~Gfr~V~~~L~~----s----~KpiVGHN~llDl-~~l~~~F--~~-pLP~~~~eFk~~i~~lFP~i~DTK~la 329 (430)
T 2a1r_A 262 EELNDAVGFSRVIHAIAN----S----GKLVIGHNMLLDV-MHTVHQF--YC-PLPADLSEFKEMTTCVFPRLLDTKLMA 329 (430)
T ss_dssp HHHHTTSBTHHHHHHHHH----H----CCEEEESSCHHHH-HHHHHHH--TC-CCCSSHHHHHHHHHHHCSSEEEHHHHH
T ss_pred HHHHhhhhHHHHHHHHHh----C----CCceEechhHHHH-HHHHHHh--cc-CCCCCHHHHHHHHHHHCCceeehHHhh
Confidence 346667777777766554 2 2445556667897 5555433 22 4443 123578987665
Q ss_pred HHh-cC--CCCCCHHHHHHHcCCC------------------CCCCCCcHHHHHHHHHHHHHHHHHhc
Q 015017 271 HEV-FG--GVRCNLKEAVEMAGLA------------------WQGRAHCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 271 r~l-~~--~~~~~L~~l~~~~gI~------------------~~g~~HrALdDA~aTA~Ll~~ll~~~ 317 (414)
... +. ....+|.++.+.+.-. ..+..|.|-+||..|+.+|.+|....
T Consensus 330 ~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l 397 (430)
T 2a1r_A 330 STQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 397 (430)
T ss_dssp TSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 332 11 1245899988866421 12456999999999999999998763
No 47
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=76.56 E-value=5.6 Score=36.35 Aligned_cols=89 Identities=13% Similarity=-0.026 Sum_probs=60.1
Q ss_pred HHHHHHHHhhcCCCCCcEEEE-EcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC---CCCCHHHHHHH-c
Q 015017 214 LLRHDKWLENKGIKNTNFAVV-TWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG---VRCNLKEAVEM-A 288 (414)
Q Consensus 214 l~~f~~fl~~~~lv~hn~~vV-~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~---~~~~L~~l~~~-~ 288 (414)
+..|.++|.+.. +..| |..+.|+ ..|.. ..|+.. ..++|+..++...+|. .+.+|.++++. +
T Consensus 97 L~~L~~lL~d~~-----i~Kvg~~~~~D~-~~L~~---~~g~~~----~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~l 163 (206)
T 1vk0_A 97 LKDLYRFFASKF-----VTFVGVQIEEDL-DLLRE---NHGLVI----RNAINVGKLAAEARGTLVLEFLGTRELAHRVL 163 (206)
T ss_dssp GHHHHHHHTCSS-----SEEEESSCHHHH-HHHHH---HHCCCC----SSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHH
T ss_pred HHHHHHHhcCCC-----ceEEEeccHHHH-HHHHH---hcCCCc----CCeeeHHHHHHHHcCCCCCCCccHHHHHHHHh
Confidence 445677888753 3444 3458897 45543 456652 4689998887766663 45789998864 6
Q ss_pred CCCC-C--------------CCCCcHHHHHHHHHHHHHHHHH
Q 015017 289 GLAW-Q--------------GRAHCGLDDAKNTARLLALLMH 315 (414)
Q Consensus 289 gI~~-~--------------g~~HrALdDA~aTA~Ll~~ll~ 315 (414)
|++. . .+-+-|..||..+.+|+.+|.+
T Consensus 164 g~~lK~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 164 WSDLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp CCCCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7665 1 0235689999999999998865
No 48
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=75.47 E-value=0.95 Score=47.81 Aligned_cols=61 Identities=10% Similarity=-0.038 Sum_probs=39.6
Q ss_pred cccCcchhhhhhhhcCCceeeecccCCCCCCCCC-CcCCchhhcc---hhhhccccccchhhhcc
Q 015017 45 IVHPGGDAGESIHQLSSEFVEYSNEFYNNPTYQH-DFGSWSTFYP---DSQKVHHCQMNSFESQF 105 (414)
Q Consensus 45 ~~~~~~~~i~~~~~~g~~aiait~~~~~~~~~h~-~~q~~p~~~~---~~~k~~~~~~~g~e~~~ 105 (414)
|..++.++|++|++.|.++|+||||....+..++ ....|.+.+. ..++.+++++.|+|.++
T Consensus 340 G~~t~eemv~~A~~~Gl~~IaiTDH~~~~~~~~~~~~~~~~~~~~~i~~l~~~gi~il~GiEv~i 404 (578)
T 2w9m_A 340 GGASIREMAEATLTLGHEFLGTADHSRAAYYANGLTIERLREQLKEIRELQRAGLPIVAGSEVDI 404 (578)
T ss_dssp CSSCHHHHHHHHHHTTCSEEEECEEBTTCGGGTCBCHHHHHHHHHHHHHHHHTTCCEECEEEEEB
T ss_pred CCCCHHHHHHHHHHCCCeEEEEcCCCCccccccCCCHHHHHHHHHHHHHHHhcCCeEEEeeeecc
Confidence 5567889999999999999999987665211100 0012222211 22223999999999885
No 49
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=72.54 E-value=22 Score=34.97 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=57.9
Q ss_pred HHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCC-CCCCHHHHHHHc-CCCC
Q 015017 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGG-VRCNLKEAVEMA-GLAW 292 (414)
Q Consensus 215 ~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~-~~~~L~~l~~~~-gI~~ 292 (414)
..|.+++.+..+ .-|.|+..+|+ ..|.. ..|+.. ..++||..... +.+. .+++|+++++.| |+..
T Consensus 64 ~~L~~ll~d~~i----~Kv~h~~k~Dl-~~L~~---~~Gi~~----~~~fDt~lAa~-lL~~~~~~~L~~L~~~~l~~~l 130 (375)
T 1yt3_A 64 SPLKAILRDPSI----TKFLHAGSEDL-EVFLN---VFGELP----QPLIDTQILAA-FCGRPMSWGFASMVEEYSGVTL 130 (375)
T ss_dssp HHHHHHHHCTTS----EEEESSCHHHH-HHHHH---HHSSCC----SSEEEHHHHHH-HTTCCTTCCHHHHHHHHHCCCC
T ss_pred HHHHHHHcCCCc----eEEEeeHHHHH-HHHHH---HcCCCC----CcEEEcHHHHH-HcCCCCChhHHHHHHHHcCCCC
Confidence 457777877532 23566678896 55643 357764 25789976554 4443 368999999877 7654
Q ss_pred CC---------CC------CcHHHHHHHHHHHHHHHHHhc
Q 015017 293 QG---------RA------HCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 293 ~g---------~~------HrALdDA~aTA~Ll~~ll~~~ 317 (414)
.. +. +.|..||..+.+|+..|.++.
T Consensus 131 ~K~~~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L 170 (375)
T 1yt3_A 131 DKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVET 170 (375)
T ss_dssp CCTTTTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 226679999999888876553
No 50
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=66.79 E-value=19 Score=32.01 Aligned_cols=93 Identities=17% Similarity=0.000 Sum_probs=57.8
Q ss_pred HHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcC-CCCCCHHHHHHHc-CCCC
Q 015017 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFG-GVRCNLKEAVEMA-GLAW 292 (414)
Q Consensus 215 ~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~-~~~~~L~~l~~~~-gI~~ 292 (414)
..+.+++.+..+ .-|.|+...|+ ..|.+ ..|+.. .+ ++|+..++..+.+ ..+++|+++++.+ |...
T Consensus 86 ~~L~~lL~d~~i----~Kv~~~~k~D~-~~L~~---~~gi~~---~~-~fDlt~lAayll~~~~~~~L~~L~~~~l~~~~ 153 (208)
T 2e6m_A 86 QGLKMLLENKSI----KKAGVGIEGDQ-WKLLR---DFDVKL---ES-FVELTDVANEKLKCAETWSLNGLVKHVLGKQL 153 (208)
T ss_dssp HHHHHHHTCTTS----EEEESSHHHHH-HHHHH---HHCCCC---CS-EEEHHHHHHHHTTCCCCCCHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCc----eEEEEeeHHHH-HHHHH---HCCCCC---CC-EEEHHHHHHHHccCCCChhHHHHHHHHcCCCc
Confidence 356677777422 23445567785 44542 367764 23 7896566666654 4568999999887 6543
Q ss_pred C-----------C------CCCcHHHHHHHHHHHHHHHHHhcCC
Q 015017 293 Q-----------G------RAHCGLDDAKNTARLLALLMHRGFK 319 (414)
Q Consensus 293 ~-----------g------~~HrALdDA~aTA~Ll~~ll~~~~~ 319 (414)
. . +.+.|..||.++.+|+..|.++..+
T Consensus 154 ~K~k~~~~s~W~~~~L~~~q~~YAa~Da~~~~~L~~~L~~~L~~ 197 (208)
T 2e6m_A 154 LKDKSIRCSNWSNFPLTEDQKLYAATDAYAGLIIYQKLGNLGDT 197 (208)
T ss_dssp CCCHHHHTSCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred CCCCCeeeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 1 1 1133678999999999888766543
No 51
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=63.11 E-value=1 Score=41.98 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=23.8
Q ss_pred ccccCcchhhhhhhhcCCceeeecccC
Q 015017 44 TIVHPGGDAGESIHQLSSEFVEYSNEF 70 (414)
Q Consensus 44 ~~~~~~~~~i~~~~~~g~~aiait~~~ 70 (414)
-+..++.+++++|++.|-+.|+||||.
T Consensus 32 Dg~~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 32 DGHLPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp TCSSCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEcCCC
Confidence 356778899999999999999999875
No 52
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=52.13 E-value=64 Score=32.26 Aligned_cols=90 Identities=13% Similarity=0.033 Sum_probs=57.4
Q ss_pred HHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCCC
Q 015017 215 LRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAWQ 293 (414)
Q Consensus 215 ~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~-gI~~~ 293 (414)
..|.+++.+..+ .-|.|+...|+ ..|.+ ..|+... .++||.... .+++..+++|+.+++.| |+...
T Consensus 149 ~~L~~lL~d~~i----~KV~h~~k~Dl-~~L~~---~~Gi~~~----~~fDt~lAa-~LL~~~~~~L~~L~~~~lg~~l~ 215 (410)
T 2hbj_A 149 HILNEVFTNPSI----VKVFHGAFMDI-IWLQR---DLGLYVV----GLFDTYHAS-KAIGLPRHSLAYLLENFANFKTS 215 (410)
T ss_dssp GGGHHHHTCTTS----EEEESSCHHHH-HHHHH---HHCCCCS----SEEEHHHHH-HHHTCSCCSHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCCc----eEEEEehHHHH-HHHHH---HcCCCcC----CEEEcHHHH-HHhCCCccCHHHHHHHHcCCCCC
Confidence 346677777432 23556678886 55542 3577642 378997544 44554468999999887 65432
Q ss_pred ---------CCC------CcHHHHHHHHHHHHHHHHHhc
Q 015017 294 ---------GRA------HCGLDDAKNTARLLALLMHRG 317 (414)
Q Consensus 294 ---------g~~------HrALdDA~aTA~Ll~~ll~~~ 317 (414)
.+. +-|..||..+.+|+..|.++.
T Consensus 216 K~~~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L 254 (410)
T 2hbj_A 216 KKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKL 254 (410)
T ss_dssp CTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 236789999999988887654
No 53
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=49.64 E-value=61 Score=32.75 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEcCcchHHHHHHHHHHHcCCCCCCCCCceeehHHHHHHhcCCCCCCHHHHHHHc-CCCC
Q 015017 214 LLRHDKWLENKGIKNTNFAVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMA-GLAW 292 (414)
Q Consensus 214 l~~f~~fl~~~~lv~hn~~vV~~g~fDir~fL~~~~~~~gi~~P~~~~~~IDl~~l~r~l~~~~~~~L~~l~~~~-gI~~ 292 (414)
+..|.+++.+. ..|.|+...|+ ..|+ ..|+..+ ..+|+. +...+++..+++|+.+++.| |...
T Consensus 84 l~~L~~lL~d~------~KV~h~~k~Dl-~~L~----~~gi~~~----~~fDt~-lAa~lL~~~~~gL~~L~~~~lg~~~ 147 (440)
T 3cym_A 84 WNDFNRAVGDA------VWILHDSLQDL-PGFD----ELGMEPQ----RLFDTE-IAARLLGLKRFGLAAVTEHFLGLTL 147 (440)
T ss_dssp HHHHHHHHTTC------EEEESSHHHHH-HHHH----HHTCCCC----EEEEHH-HHHHHTTCSSCSHHHHHHHHHCEEC
T ss_pred HHHHHHHHCCC------CEEEEcCHHHH-HHHH----HcCCcCC----ceehHH-HHHHHhCCCCCCHHHHHHHHhCCCc
Confidence 44567777763 24666778886 4553 5677542 578984 55556654478999999987 5432
Q ss_pred C---------CCC------CcHHHHHHHHHHHHHHHHHh
Q 015017 293 Q---------GRA------HCGLDDAKNTARLLALLMHR 316 (414)
Q Consensus 293 ~---------g~~------HrALdDA~aTA~Ll~~ll~~ 316 (414)
. .+. ..|..||..+.+|+..|.++
T Consensus 148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~ 186 (440)
T 3cym_A 148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAE 186 (440)
T ss_dssp CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 23778999999888877654
No 54
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141, structural genomics, PSI-2, protein structure initiative; 2.10A {Listeria monocytogenes str}
Probab=37.86 E-value=7.5 Score=37.09 Aligned_cols=26 Identities=4% Similarity=-0.239 Sum_probs=22.1
Q ss_pred cCcchhhhhhhhcCCceeeecccCCC
Q 015017 47 HPGGDAGESIHQLSSEFVEYSNEFYN 72 (414)
Q Consensus 47 ~~~~~~i~~~~~~g~~aiait~~~~~ 72 (414)
.+..++|++|.+-|-+.|+||||.-.
T Consensus 18 ~~~~e~~~~A~~~G~~~i~~TdH~~~ 43 (283)
T 3dcp_A 18 DDVEEMVLKAIELDFDEYSIVEHAPL 43 (283)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEECCC
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCC
Confidence 35679999999999999999987644
No 55
>2wje_A CPS4B, tyrosine-protein phosphatase CPSB; capsule biogenesis/degradation, manganese, hydrolase, exopolysaccharide synthesis; 1.90A {Streptococcus pneumoniae} PDB: 2wjd_A 2wjf_A 3qy8_A
Probab=37.00 E-value=7.6 Score=35.75 Aligned_cols=54 Identities=2% Similarity=-0.118 Sum_probs=33.2
Q ss_pred hhhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcchh------hhccccccchhhhcc
Q 015017 51 DAGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPDS------QKVHHCQMNSFESQF 105 (414)
Q Consensus 51 ~~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~~------~k~~~~~~~g~e~~~ 105 (414)
+++++|.+-|-+.|++|||.... ........+...+... ...++++..|+|.++
T Consensus 28 e~i~~A~~~Gi~~i~~TdH~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~G~E~~~ 87 (247)
T 2wje_A 28 ALLAESYRQGVRTIVSTSHRRKG-MFETPEEKIAENFLQVREIAKEVASDLVIAYGAEIYY 87 (247)
T ss_dssp HHHHHHHHTTEEEEECCCEEBTT-TBCCCHHHHHHHHHHHHHHHHHHCTTCEEECCCEEEC
T ss_pred HHHHHHHHCCCCEEEECCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEeeEEee
Confidence 69999999999999999876531 1111111111222221 123788999999885
No 56
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=36.60 E-value=8.5 Score=41.16 Aligned_cols=23 Identities=9% Similarity=-0.237 Sum_probs=10.5
Q ss_pred CCCCceeecCCCcccCCCcccceeecCC
Q 015017 385 KQGSVFFGCGNWTVTRGARCHFFEWAFT 412 (414)
Q Consensus 385 ~qg~~f~~c~~~~~~~~~~c~~f~w~~~ 412 (414)
..|+.||||.||+ .|.|-.|..|
T Consensus 589 k~G~~f~gCs~yp-----~C~f~~~~~p 611 (633)
T 2gai_A 589 DEIAVIDDGKIFL-----GRKDSESGSP 611 (633)
T ss_dssp TSBCEEETTEEEC---------------
T ss_pred cCCCeEEeCCCCc-----CCCCeecCCc
Confidence 4688999999882 4999999765
No 57
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=36.18 E-value=65 Score=32.56 Aligned_cols=49 Identities=20% Similarity=0.166 Sum_probs=35.0
Q ss_pred ccEEEEEEeeCCCCCCCC----------------------CCCcEEEEcEEEEEcCC---CeEeeEEEEeecCC
Q 015017 136 QYFVVIDFEATCDKDKNP----------------------YPQEIIEFPSVIVSSVT---GQLEACFQTYVRPT 184 (414)
Q Consensus 136 ~~~VV~D~ETTGl~~~~~----------------------~~deIIEIgAV~vd~~~---g~i~d~F~~lVkP~ 184 (414)
..||+||+|.||+..... ..-.|||+|...++... +-....|+-++-|.
T Consensus 22 ~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~~~~~~~~~fNF~~FP~ 95 (430)
T 2a1r_A 22 ADFFAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPK 95 (430)
T ss_dssp CSEEEEEEEESCSCSSSCC-----CCCCHHHHHHHHHHHTTTBCEEEEEEEEEEEETTTTEEEEEEEEEEBCCC
T ss_pred CCEEEEeeeeccccCCCccccccccCCCHHHHHHHHHHHHhhcceeeEEEEEEeecCCCCceeEEEEEEEeccc
Confidence 489999999999842111 12469999999997321 23577899888775
No 58
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=33.51 E-value=13 Score=36.21 Aligned_cols=43 Identities=28% Similarity=0.746 Sum_probs=29.3
Q ss_pred cc-ccccceecCCCcCcceeccCCCCCCCceeecC----CCcccCCCcccc
Q 015017 361 IF-QYHPSCFCGVKSSKGMVRKPGPKQGSVFFGCG----NWTVTRGARCHF 406 (414)
Q Consensus 361 ~~-~~~~~c~cg~~~~~~~~~~~gp~qg~~f~~c~----~~~~~~~~~c~~ 406 (414)
|+ +++|+ ||-....++|+.-|..+|..|.-|+ -|...| .+|+|
T Consensus 180 ~~~~~CPv--CGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R-~~C~~ 227 (309)
T 2fiy_A 180 ESRTLCPA--CGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR-IKCSH 227 (309)
T ss_dssp TTCSSCTT--TCCCEEEEEEEC----CCEEEEEETTTCCEEECCT-TSCSS
T ss_pred ccCCCCCC--CCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC-cCCcC
Confidence 65 57776 7888888888776778898888886 477664 56764
No 59
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=30.38 E-value=14 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.068 Sum_probs=21.0
Q ss_pred cccCcchhhhhhhhcCCceeeecccCC
Q 015017 45 IVHPGGDAGESIHQLSSEFVEYSNEFY 71 (414)
Q Consensus 45 ~~~~~~~~i~~~~~~g~~aiait~~~~ 71 (414)
++| +.+++++|+++ .+.||||||+.
T Consensus 13 hvh-~~e~~~~A~~~-~~~i~itdH~~ 37 (212)
T 1v77_A 13 DIR-DKEAYELAKEW-FDEVVVSIKFN 37 (212)
T ss_dssp EEC-SHHHHHHHHHH-CSEEEEEEEES
T ss_pred CcC-HHHHHHHHHHH-hcEEEEeeccC
Confidence 344 88999999999 99999997544
No 60
>3q7c_A Nucleoprotein; deddh exonuclease, 3' exonuclease, hydrolase; 1.50A {Lassa virus} PDB: 3q7b_A 4fvu_A
Probab=29.38 E-value=72 Score=29.59 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=58.6
Q ss_pred EEEEEEeeCCCCCCCCCCCcEEEEcEEEEEcCCCeEeeEEEEeecCCCCCCCCcchhhhcCCChhhhhCCCCHHHHHHHH
Q 015017 138 FVVIDFEATCDKDKNPYPQEIIEFPSVIVSSVTGQLEACFQTYVRPTCNQLLSDFCKDLTGIQQIQVDRGVTLSEALLRH 217 (414)
Q Consensus 138 ~VV~D~ETTGl~~~~~~~deIIEIgAV~vd~~~g~i~d~F~~lVkP~~~p~Ls~~~~~LTGIT~e~V~~Ap~f~eVl~~f 217 (414)
-.=||+|.+- .+-+||+ ++-+.+|+- .+.|-+|.......+.++--|||.-.||.+|.+ -.+..+
T Consensus 59 ttWiDIEG~p--------~DPVElA--iyQP~sg~Y---IHcyR~P~D~K~FK~~SKySHGillkDl~~aqP--GL~S~v 123 (243)
T 3q7c_A 59 KTWMDIEGRP--------EDPVEIA--LYQPSSGCY---IHFFREPTDLKQFKQDAKYSHGIDVTDLFATQP--GLTSAV 123 (243)
T ss_dssp CCEEEEESCT--------TSCSEEE--EEETTTTEE---EEEECCCSCHHHHHHHHHHTTCBCGGGGTTBCT--THHHHH
T ss_pred CeEEecCCCC--------CCCeEEE--EeccCCCcE---EEEecCCcchhhhcccCccccceehhhhhhcCC--chHHHH
Confidence 3458999873 3457885 467788886 477888975223445567779999999998776 344555
Q ss_pred HHHHhhcCCCCCcEEEEEcCcchHHHHHH
Q 015017 218 DKWLENKGIKNTNFAVVTWSNWDCRVMLE 246 (414)
Q Consensus 218 ~~fl~~~~lv~hn~~vV~~g~fDir~fL~ 246 (414)
+..|-. |.++-+-|+-||+..|+
T Consensus 124 i~~LP~------nMVlT~QGsDDIrkLld 146 (243)
T 3q7c_A 124 IDALPR------NMVITCQGSDDIRKLLE 146 (243)
T ss_dssp HHHSCT------TCEEEESSHHHHHHHHH
T ss_pred HHhCCc------CcEEEeeChHHHHHHHH
Confidence 555544 44455568878765554
No 61
>3qy7_A Tyrosine-protein phosphatase YWQE; TIM barrel, polymerase and histindinol phosphatase(PHP)-like phosphatase, hydrolase; 1.62A {Bacillus subtilis} PDB: 3qy6_A
Probab=28.64 E-value=7.8 Score=36.55 Aligned_cols=60 Identities=5% Similarity=-0.093 Sum_probs=35.0
Q ss_pred cccCcch---hhhhhhhcCCceeeecccCCCCCCCCCCcCCchhhcch----hh--hccccccchhhhcc
Q 015017 45 IVHPGGD---AGESIHQLSSEFVEYSNEFYNNPTYQHDFGSWSTFYPD----SQ--KVHHCQMNSFESQF 105 (414)
Q Consensus 45 ~~~~~~~---~i~~~~~~g~~aiait~~~~~~~~~h~~~q~~p~~~~~----~~--k~~~~~~~g~e~~~ 105 (414)
|..+..+ ++++|.+-|-+.|++|||-.....+ .......+.+.. .+ ..++++..|+|-.+
T Consensus 15 G~~~~~~sl~~~~~a~~~G~~~i~~T~H~~~~~~~-~~~~~i~~~~~~l~~~~~~~~~~i~I~~G~Ev~~ 83 (262)
T 3qy7_A 15 GAGDSADSIEMARAAVRQGIRTIIATPHHNNGVYK-NEPAAVREAADQLNKRLIKEDIPLHVLPGQEIRI 83 (262)
T ss_dssp SCSSHHHHHHHHHHHHHTTCCEEECCCBSEETTEE-CCHHHHHHHHHHHHHHHHHTTCCCEEECCCEEEC
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCCEEecCeEEec
Confidence 3344554 9999999999999999754321000 011112222221 11 24678889999875
Done!