BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015021
(414 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H2M9|RBGPR_HUMAN Rab3 GTPase-activating protein non-catalytic subunit OS=Homo
sapiens GN=RAB3GAP2 PE=1 SV=1
Length = 1393
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 149/334 (44%), Gaps = 46/334 (13%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y G L+ QL++ +L+L+ R R EE+ ++ P
Sbjct: 156 IVVGFTSGYVRFYTENGVLLLAQLLNEDPVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 215
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 216 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 267
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G + F E ++ L+
Sbjct: 268 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSNPFTGFFYALEGSTQPLL 327
Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
A+ SK+ A F+ S + W+S E++ +K +PK + A+PL L D
Sbjct: 328 SHVALAVASKLTSALFNAASGW--LGWKSKHEEEAVQKQKPKVEP---ATPLAVRFGLPD 382
Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
R GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++ + + +
Sbjct: 383 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQTVEDLHER 442
Query: 365 ATSSAYYAPVK-----SDYCLCLAIHAPRKGIIE 393
A ++P S L I+APR+GI+E
Sbjct: 443 VPEKADFSPFGNSQGPSRVAQFLVIYAPRRGILE 476
>sp|Q5U1Z0|RBGPR_RAT Rab3 GTPase-activating protein non-catalytic subunit OS=Rattus
norvegicus GN=Rab3gap2 PE=1 SV=2
Length = 1386
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 150/334 (44%), Gaps = 47/334 (14%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y +G L+ QL++ R+L+L+ R R EE+ ++ P
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDRVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 214 IVTIDGFSLFQSLRA--------CRNQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G F E ++ L+
Sbjct: 266 ASIGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325
Query: 256 G----AILSKVVPATFSTISSLSKMIWRS---EQSPKKSEPKPQSFARASPLTC---LKD 305
A+ SK+ A FS S + W+S E++ +K +PK + A+PL L D
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEETVQKQKPKMEP---ATPLAVRFGLPD 380
Query: 306 HPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDA 364
R GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++++ + +
Sbjct: 381 SRRHGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQIGWIQIVEDLHER 440
Query: 365 ATSSAYYAPV-----KSDYCLCLAIHAPRKGIIE 393
++P S L I+APR+GI+E
Sbjct: 441 VPEKGDFSPFGNTQGPSRVAQFLVIYAPRRGILE 474
>sp|Q8BMG7|RBGPR_MOUSE Rab3 GTPase-activating protein non-catalytic subunit OS=Mus
musculus GN=Rab3gap2 PE=1 SV=2
Length = 1366
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 144/331 (43%), Gaps = 41/331 (12%)
Query: 93 LAVGTSRGYFLVYDLKGDLVHRQLIHPGRILKLRVRGSR--RDLTQDTAEEEVCVVMPGV 150
+ VG + GY Y +G L+ QL++ ++L+L+ R R EE+ ++ P
Sbjct: 155 IVVGFTSGYVRFYT-EGVLLLAQLLNEDKVLQLKCRTYEIPRHPGVTEQNEELSILYPAA 213
Query: 151 LARFDGSEIQKMLQRWFQDSNSNFWDQKPKQRDSEDLENSYERLPHQLWNVSKYGPCADA 210
+ DG + + L+ +Q K S + L ++ W + D
Sbjct: 214 IVTIDGFSLFQSLRACR--------NQVAKAAASGNENIQPPPLAYKKWGLQDIDTIIDH 265
Query: 211 AITGLM---PPPLMEVQSSQRYFCA------------VTIGEDSVISAFRLSEDRSRSLV 255
A G+M P M+ S+ F A +T+G F E ++ L+
Sbjct: 266 ASVGIMTLSPFDQMKTASNIGGFNAAIKNSPPAMSQYITVGSSPFTGFFYALEGSTQPLL 325
Query: 256 G----AILSKVVPATFSTISSLSKMIWRSEQSPKKSEPKPQSFARASPLTC---LKDHPR 308
A+ SK+ A FS S + W+S+ + + A+PL L D R
Sbjct: 326 SHVALAVASKLTSALFSAASGW--LGWKSKHEEDTVQKQKPKMEPATPLAVRFGLPDSRR 383
Query: 309 KGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVN-KDAATS 367
GE + LSP +LAA+TD GR++LLD + +R+WKGYRDA +++++ + +
Sbjct: 384 HGESICLSPCNTLAAVTDDFGRVILLDVARGIAIRMWKGYRDAQVGWIQIVEDLHERVPE 443
Query: 368 SAYYAPV-----KSDYCLCLAIHAPRKGIIE 393
++P S L I+APR+GI+E
Sbjct: 444 KGGFSPFGNTQGPSRVAQFLVIYAPRRGILE 474
>sp|Q9VKB9|RBGPR_DROME Rab3 GTPase-activating protein regulatory subunit OS=Drosophila
melanogaster GN=rab3-GAP PE=1 SV=2
Length = 1341
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 151/372 (40%), Gaps = 60/372 (16%)
Query: 52 TVIINWA----DPEGLVAKIRPELSPIASEYIT--AIEWLVFEEMRALAVGTSRGYFLVY 105
T ++ W DP +V + P+ T AIEW +AVG G Y
Sbjct: 67 TYVLGWCGELEDPNQIVTSLT--CLPMTQNKSTDGAIEW------TCVAVGLCSGMVTFY 118
Query: 106 DLKGDLVHRQLIHPGRILKLRVRGSRRDLTQDTAEEEVCVVMPGVLARFDGSEIQKMLQR 165
G + Q ++ ++++ + R A+ + ++ P L G +I L
Sbjct: 119 TDSGVKLFSQCCQEDPVIGVKLQSAPR---HSEADSLLYIIYPRCLCFIQGQDILPTLNN 175
Query: 166 WFQDSNSNFWDQKPKQRDSEDLENSY---ERLPHQLWNV--SKYGPCADAAITGLMPPPL 220
+ QR + + +SY + +P Q + + DAAI+ PP
Sbjct: 176 CRHNV----------QRGALE-RSSYPTADVVPFQKYKFKQEREAVINDAAISTTQRPPT 224
Query: 221 MEVQSSQR----YFCAV-----------TIGEDSVISAFRLSEDRSRSLVGAILSKVVPA 265
+ Q YF V G + + F+ E +G + V+
Sbjct: 225 YDYIVQQTIGLGYFAKVHATPPRSSQVLAAGAEPYLGFFQAEEGYKTMSLGEVAKDVIGI 284
Query: 266 TFSTISSLSKMIWRSEQ---SPKKSE-PKPQSFARASPLTCLKDHPRKGERLTLSPSGSL 321
+ + L + R+ + SP++S P P A L D R G L+++P G L
Sbjct: 285 AYKNL--LGGIFRRAPEPLPSPEESPLPVPTKEAPMRIRCRLYDGKRDGLTLSVAPGGRL 342
Query: 322 AAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATSSAYYAPVKSDYCLC 381
A +TD+L R++L+DT +++R+WKGYRDA C F+ + K+ + K+ L
Sbjct: 343 AVVTDNLDRVMLVDTHQAIILRVWKGYRDAQCAFVPV---KEKSVRGIKTHKRKA---LF 396
Query: 382 LAIHAPRKGIIE 393
L I+APR G ++
Sbjct: 397 LVIYAPRMGCLD 408
>sp|Q22670|RBGPR_CAEEL Rab3 GTPase-activating protein regulatory subunit OS=Caenorhabditis
elegans GN=rbg-2 PE=3 SV=1
Length = 1307
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 308 RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDASCVFMEMLVNKDAATS 367
R + ++ SP A+TD + R+L++D + VV ++KGYRDAS ++ + + A
Sbjct: 374 RVAQNVSRSPDCQYVAVTDRMARVLVIDIASRQVVLIFKGYRDASISWVSVTEDDRVAQF 433
Query: 368 SAYYAPVKS 376
+AP +S
Sbjct: 434 LTIFAPRRS 442
>sp|Q2RFN9|RPOB_MOOTA DNA-directed RNA polymerase subunit beta OS=Moorella thermoacetica
(strain ATCC 39073) GN=rpoB PE=3 SV=1
Length = 1141
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 292 QSFARASPLTCLKDHP--RKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR 349
Q F R++ TC+ P RKGER++ + + TD G L L LV W+GY
Sbjct: 625 QKFVRSNQGTCINQKPIVRKGERVSAGQTIADGPSTDQ-GE-LALGRNILVAFMTWEGYN 682
Query: 350 DASCVFM-EMLVNKDAATS 367
+ + E LV D TS
Sbjct: 683 YEDAILISEKLVKDDIFTS 701
>sp|Q5JTN6|WDR38_HUMAN WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1
Length = 314
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%)
Query: 295 ARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYRDA 351
ARA L LK H R E ++ SP A R++L D Q+ ++RL G+RD+
Sbjct: 93 ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDS 149
>sp|B3QC00|RPOB_RHOPT DNA-directed RNA polymerase subunit beta OS=Rhodopseudomonas
palustris (strain TIE-1) GN=rpoB PE=3 SV=1
Length = 1374
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFME 357
PL + DH +KG+ + PS L + +LGR LV W GY + S + E
Sbjct: 779 PLVKVGDHVKKGDIIADGPSTDLGEL--ALGR------NVLVAFMPWNGYNFEDSILLSE 830
Query: 358 MLVNKDAATS 367
+V +D TS
Sbjct: 831 RIVKEDVFTS 840
>sp|Q6N4R9|RPOB_RHOPA DNA-directed RNA polymerase subunit beta OS=Rhodopseudomonas
palustris (strain ATCC BAA-98 / CGA009) GN=rpoB PE=3
SV=1
Length = 1374
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 299 PLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRLWKGYR-DASCVFME 357
PL + DH +KG+ + PS L + +LGR LV W GY + S + E
Sbjct: 779 PLVKVGDHVKKGDIIADGPSTDLGEL--ALGR------NVLVAFMPWNGYNFEDSILLSE 830
Query: 358 MLVNKDAATS 367
+V +D TS
Sbjct: 831 RIVKEDVFTS 840
>sp|Q5RJ54|ZN187_MOUSE Zinc finger protein 187 OS=Mus musculus GN=Znf187 PE=2 SV=1
Length = 466
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 288 EPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRI 331
EP P+ AR P L P + + T S +G+L A TDS GR+
Sbjct: 145 EPAPRREAREQPGCALPQKPEERGKETRSENGNLIAGTDSCGRM 188
>sp|Q85BW1|RPOB_ANTFO DNA-directed RNA polymerase subunit beta OS=Anthoceros formosae
GN=rpoB PE=2 SV=1
Length = 1071
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 285 KKSEPKPQSFARASPLTCLKDHPRKGERLTLSPSGSLAAITDSLGRILLLDTQALVVVRL 344
K+ E K + R++ TC+ + PR R + LA + G L L LV
Sbjct: 603 KEVETKLVIYQRSNNSTCIHEKPRIQLREYVKKGQILADGRATAGGELALGKNILVAYMP 662
Query: 345 WKGYRDASCVFM-EMLVNKDAATS 367
W+GY + + E L+++D TS
Sbjct: 663 WEGYNFEDAILISERLIHEDIYTS 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,972,760
Number of Sequences: 539616
Number of extensions: 6187167
Number of successful extensions: 14390
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14377
Number of HSP's gapped (non-prelim): 16
length of query: 414
length of database: 191,569,459
effective HSP length: 120
effective length of query: 294
effective length of database: 126,815,539
effective search space: 37283768466
effective search space used: 37283768466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)